<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:53:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348463" ref_strand="+" ref_description="SGN-E348463 [cTOF-30-O7]">
      <seq>atgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagatttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgttcagagtgatccagaagatcgatttgctcctcgacctgtcctggcaaggactccagaggaagttatagcagctaaaggtgttaagccgacactgtctcctaatctaaatactcttgccttagttgaggcagctggtgtaaagcgccttctcttctgcggggttggctgccaagttcaagctttaagatcagtggagcaatatttgaatctggaaaaactttatgttctaggcactaactgtgtggataatggaccacgagaaggtttagataaatttctgaaggctgctagcagtgaacctgaaacagttctccactatgagtttatgcaagactacaaggtccatctgaagcatttggatggccatattgaagaggttccctatttctgtttaccagcaaatgacttggttgatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="6943" stop="1605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6643" g_stop="6607" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="149" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="234" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4808" g_stop="4767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="276" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4766" i_stop="4666" i_length="101">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4665" g_stop="4587" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="355" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4586" i_stop="3901" i_length="686">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3900" g_stop="3849" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="407" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3848" i_stop="3747" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3746" g_stop="3684" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="470" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3683" i_stop="3010" i_length="674">
            <donor d_prob="0.079" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3009" g_stop="2912" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="568" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2911" i_stop="2061" i_length="851">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="2060" g_stop="2025" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="604" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="2024" i_stop="1948" i_length="77">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="1947" g_stop="1905" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="647" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E348463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6643" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4767"/>
          <exon e_start="4665" e_stop="4587"/>
          <exon e_start="3900" e_stop="3849"/>
          <exon e_start="3746" e_stop="3684"/>
          <exon e_start="3009" e_stop="2912"/>
          <exon e_start="2060" e_stop="2025"/>
          <exon e_start="1947" e_stop="1905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAGGTTTGTGACTGGGAATTCCTGAGCTATTTGTATTCATGTTGATTTTTTACCTGTTAATTTAACCATTTCGATCTTCAACTTTAATTTTATGTTTCTAATAGGACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTCTTGCCTTAGTTGAGGTTTCTTCTTTCACTTCCATTATCATCAGAATCTTTGATTGTTCTGTTGTCATCAATGCATTTATAATCTGTGTAACTCTATTGAATTCTTAATGGAGCATGTTGTCATGGATTGAAGATGCCATATCTCTCCTCAATAGGTAATTGGAACTTGTGTAGCTATGCTTTCTTATTCTTCACCACACCACCAAATTAGCTTTACTATCACCCCCCCTCCCCCCGTCAGACCACCACAATCTAATACTGTAATTGCCCCAATCGGGGATTTTATTAAGATAAGCTCTTTTGATTTTCTGATTTGTTCCATATTATGGTTCGAGCTGAATTCCTTTCCTGACAATTTCAGAGTCTTTTTGCCAAATTTTTCCTCTCTATCCATTTGAAGGTCGTAGGTTATTTTTTGACTTTATTTTAACTATTTGAGCTTATTTCTCCCCAAATGCTTTCTCCCTTTCTTTTGGTAAGCATCAACCATCTGCATATCACACTTGTAAGGGTAGGCTTCTTGTTATTTCTTTTCATAACAATGCAATCATGGAATTTCACACTTTCTAGTCGTGCATGCTCTAATGCATTAAAAACTGGGCTTTAAGAGATTCCAGTTTTCACTGAGGATTGTCACACAAGTGTATAGTATAACTTGTAGTTCAAATGTTGAAGTAAGCAGTATTGTTTCCTGGAAACAGGCAGCTGGTGTAAAGCGCCTTCTCTTCTGCGGGGTTGGCTGCCAAGTTCAAGGTATCCAAGTTGTTATGATCTCTTCATCTCTGCTTCAAACTTGATGTTGTCATTACAATTTACATCTCTGTATTTTAAGCAGAACAATTTCCTAACTTGCAGCTTTAAGATCAGTGGAGCAATATTTGAATCTGGAAAAACTTTATGTTCTAGGCACTAACTGTGGTGAGTAGTCGGTGGTATTCATAGACTCCTTTCCTACATCTTTGATCAATTCTAATATAACTACCAACTGCTTGAAATTTGATTATGTTTGTAATTACGTGTGTTTGGAGATCTAATTTTGATCTTTTTTTAAATTAAATAACAAAAAGTTTGATCTATTAACATCACCAGTAGGAGTACTTGTTTGTTGTTAGTATCTCAAAAAAGAGTCAACTTAATTTTTTCAGTTTGTCCACCACAGAAGCAGGGAGAGAAAATAAGACATATAGTAAGTGGACAAACTGGACAAAGATTCAATGGAATCTTTTATGATACTCCCTCTGTTTCAACTTGTTTGTGTGGTTTTTACTTGTCACAAAGTTTAAGAAAGTAAAGAAAACTTTTTGAATTTCGTGGTCTTAACTCTTAAACTATAAATATGTAGAATGTACCAAAATACCTCTTAACTCGTGGTTTCAAACAGGCTATGTGGAAAGTTGGAATTATAGAGTTTCAGGAAAGGGAAAGAAATATTTTTTTCGAAACGGACTGAAAAGGAATAAGACAATTAATTGAAATGGAGGGAGTATATAGTAAGAGGGATGCTCTATAAACTGCTTTTTATTAGAATCTCCTTTCCCCTCTTAGATATTTTTAGTCAATATAGACCTATACTAACTGTCATTTCTCAACAGTGGATAATGGACCACGAGAAGGTTTAGATAAATTTCTGAAGGCTGCTAGCAGTGAACCTGAAACAGTTCTCCACTATGAGTTTATGCAAGACTACAAGGTGTGCTACTGTTATATTTCTTCCATAAAGAAAAAAAAGTAAGCTCCTGTTACTCTTTTATGACAAGCTGAGCTTCATTGTGAGACAACTTATGCATAACCTCTGTGATCTTGGAATTCTATCCATTCAAGTATAAGAACAAGGAAACCAACTTCTACATTCTGTGTTTGTCATGACGATATGTTTTCTGCTTCTGTTGTATTCTAAAACATCAGTAAACAGCCTTTCTTAGTCTGATAACTAGGGTGCTTTTCTAGAATATGTTTTCATTTGGTTGGTGAGGTAAGTTCACTCATGAAGATGCACTTCAATATATCATATTGTCTCCATCCTGATAAATTTTATATGACACATCTTTATTTTGGGCGTACAAAAATCTTTGACACCATCTTACTAACAATATAACTTTATACAACTTCATCAGTTTCTCAAATTTTAATATGTTTGAATAGTCAAATTATTAAGGTTTGATTTGGCATTTCTATGTCAACCTAATTTCGTTTACAAAAATATTTTAAAATTTTCCTCAACTACTACCTATAAAATACACAAATCAAATTAATATCTCAAGTACCATGCCTCGTCCGCTGGTGTCGTGTTGAATTTGATGGAGGGTTACTATCCTTTGTTGGATCAGAAATTTACCAATAAGTAGGATCTTGCAAATGAGAAAGACTAAATTAAGCTCACATGTGCTTCATCACCTTATAGATGAAAACATTTGACAGTTAATCCTGTAAACCATATTATAGCTTTCTTCTTTTACTATGATTTAAAGGATATACTATTGAATTGCATGTGATAGTTTTCTAATCAGTTGAAGCATCTGTCTAAGCTCTACATTTCAACAGGTCCATCTGAAGCATTTGGATGGCCATATTGAAGAGGTAAAATAGCATCTTCTTTTTCGTATCTTTTGTTTTATTTGAATGCTGTTTATTCAGATCTATATTTCACTAAGCAGGTTCCCTATTTCTGTTTACCAGCAAATGACTTGGTTGATGTTA</genome_strand>
        <mrna_strand>ATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAG.....................................................................................................GACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTCTTGCCTTAGTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTGTAAAGCGCCTTCTCTTCTGCGGGGTTGGCTGCCAAGTTCAAG......................................................................................................CTTTAAGATCAGTGGAGCAATATTTGAATCTGGAAAAACTTTATGTTCTAGGCACTAACTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATAATGGACCACGAGAAGGTTTAGATAAATTTCTGAAGGCTGCTAGCAGTGAACCTGAAACAGTTCTCCACTATGAGTTTATGCAAGACTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTGAAGCATTTGGATGGCCATATTGAAGAG.............................................................................GTTCCCTATTTCTGTTTACCAGCAAATGACTTGGTTGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575000" ref_strand="+" ref_description="SGN-E575000 [34556]">
      <seq>aaaattctctgctttacctttcaaattttacactatttcatcttcttcacaacaacaagatgcaaaccaaaatccgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtggtacttatccagctaaagaccactgcagccactgtggtttgtgcgacacttactacattgctcatgtgaagaatgcatgtgctttcttgggggatggcatgtctagagttgattctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagacttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgtccagagtgatccagaagatcgatttgctccccgacctgtcctggcaaggactccagaggaagttatagcagctaaaggtgttaagccgacactgtctccttaatctaaatactcttgccttagttgaggcagctggtgttaaagcgcctttctcttcttgcggggtttggctgccaagttcaagctttaagatcagtggagcaataatttgaatctggaaaaggtttatgtactaggtactaactgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8495" stop="3384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8195" g_stop="8137" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="162" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="247" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="359" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="444" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="486" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4766" i_stop="4666" i_length="101">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4665" g_stop="4587" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="566" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4586" i_stop="3901" i_length="686">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.862" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3900" g_stop="3849" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="622" r_length="56" r_score="0.846"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3848" i_stop="3747" i_length="102">
            <donor d_prob="0.994" d_score="0.83"/>
            <acceptor a_prob="0.803" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="3746" g_stop="3684" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="686" r_length="64" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E575000" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8195" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4767"/>
          <exon e_start="4665" e_stop="4587"/>
          <exon e_start="3900" e_stop="3849"/>
          <exon e_start="3746" e_stop="3684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAGGTTTGTGACTGGGAATTCCTGAGCTATTTGTATTCATGTTGATTTTTTACCTGTTAATTTAACCATTTCGATCTTCAACTTTAATTTTATGTTTCTAATAGGACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCC-TAATCTAAATACTCTTGCCTTAGTTGAGGTTTCTTCTTTCACTTCCATTATCATCAGAATCTTTGATTGTTCTGTTGTCATCAATGCATTTATAATCTGTGTAACTCTATTGAATTCTTAATGGAGCATGTTGTCATGGATTGAAGATGCCATATCTCTCCTCAATAGGTAATTGGAACTTGTGTAGCTATGCTTTCTTATTCTTCACCACACCACCAAATTAGCTTTACTATCACCCCCCCTCCCCCCGTCAGACCACCACAATCTAATACTGTAATTGCCCCAATCGGGGATTTTATTAAGATAAGCTCTTTTGATTTTCTGATTTGTTCCATATTATGGTTCGAGCTGAATTCCTTTCCTGACAATTTCAGAGTCTTTTTGCCAAATTTTTCCTCTCTATCCATTTGAAGGTCGTAGGTTATTTTTTGACTTTATTTTAACTATTTGAGCTTATTTCTCCCCAAATGCTTTCTCCCTTTCTTTTGGTAAGCATCAACCATCTGCATATCACACTTGTAAGGGTAGGCTTCTTGTTATTTCTTTTCATAACAATGCAATCATGGAATTTCACACTTTCTAGTCGTGCATGCTCTAATGCATTAAAAACTGGGCTTTAAGAGATTCCAGTTTTCACTGAGGATTGTCACACAAGTGTATAGTATAACTTGTAGTTCAAATGTTGAAGTAAGCAGTATTGTTTCCTGGAAACAGGCAGCTGGTG-TAAAGCGCC-TTCTCTTC-TGCGGGG-TTGGCTGCCAAGTTCAAGGTATCCAAGTTGTTATGATCTCTTCATCTCTGCTTCAAACTTGATGTTGTCATTACAATTTACATCTCTGTATTTTAAGCAGAACAATTTCCTAACTTGCAGCTTTAAGATCAGTGGAGCAAT-ATTTGAATCTGGAAAAACTTTATGTTCTAGGCACTAACTGTG</genome_strand>
        <mrna_strand>AAAATTCTCTGCTTTACCTTTCAAATTTTACACTATTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAATCCGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGTACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGCGACACTTACTACATTGCTCATGTGAAGAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGACTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTCCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCCCGACCTGTCCTGGCAAG.....................................................................................................GACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTTAATCTAAATACTCTTGCCTTAGTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTGTTAAAGCGCCTTTCTCTTCTTGCGGGGTTTGGCTGCCAAGTTCAAG......................................................................................................CTTTAAGATCAGTGGAGCAATAATTTGAATCTGGAAAAGGTTTATGTACTAGGTACTAACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475135" ref_strand="+" ref_description="SGN-E475135 [cSTB-39-I8]">
      <seq>ggaaaattctctgctttacctttcaaattttacactatttcatcttcttcacaacaacaagatgcaaaccaaaatccgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtggtacttatccagctaaagaccactgcagccactgtggtttgtgcgacacttactacattgctcatgtgaagaatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagacttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgtccagagtgatccagaagatcgatttgctccccgacctgtcctggcaaggactccagaggaagttatagcagctaaaggtgttaagccgacactgtctcctaatctaaatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8497" stop="4301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8197" g_stop="8137" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="164" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="249" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="361" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="446" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="488" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4766" i_stop="4666" i_length="101">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4665" g_stop="4601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="553" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E475135" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8197" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4767"/>
          <exon e_start="4665" e_stop="4601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAGGTTTGTGACTGGGAATTCCTGAGCTATTTGTATTCATGTTGATTTTTTACCTGTTAATTTAACCATTTCGATCTTCAACTTTAATTTTATGTTTCTAATAGGACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTC</genome_strand>
        <mrna_strand>GGAAAATTCTCTGCTTTACCTTTCAAATTTTACACTATTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAATCCGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGTACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGCGACACTTACTACATTGCTCATGTGAAGAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGACTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTCCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCCCGACCTGTCCTGGCAAG.....................................................................................................GACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292166" ref_strand="+" ref_description="SGN-E292166 [cLET-1-I14]">
      <seq>gcgtttcttactggaaaaatctctactttacccttcaaattttacactgtttcatcttcttcacaacaacaagatgcaaaccaaaacctgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtgggacttatccagctaaagaccactgcagccactgtggtttgtgtgacacttactacattgctcatgtgaataatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagatttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgttcagagtgatccagaagatcgatttgctcctcgacctgtcctggcaaggactccagaggaagttatagcagctaaaggtgttaagccgacactgtctcctaatctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8509" stop="4306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8209" g_stop="8137" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="176" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="261" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="373" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="458" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="500" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4766" i_stop="4666" i_length="101">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4665" g_stop="4606" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="560" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E292166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8209" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4767"/>
          <exon e_start="4665" e_stop="4606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAGGTTTGTGACTGGGAATTCCTGAGCTATTTGTATTCATGTTGATTTTTTACCTGTTAATTTAACCATTTCGATCTTCAACTTTAATTTTATGTTTCTAATAGGACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAA</genome_strand>
        <mrna_strand>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAG.....................................................................................................GACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475137" ref_strand="+" ref_description="SGN-E475137 [cSTB-39-I12]">
      <seq>ggaaaattctctgctttacctttcaaattttaccactatttcatcttcttcacaacaaccaagatgccaaaccaaaatccgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtggtacttatccagctaaagaccactgcagccactgtggtttgtgcgacacttactacattgctcatgtgaagaatgcctgtgcctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagacttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgtccagagtgatccagaagatcgatttgctccccgacctgtcctggcaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8497" stop="4466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8197" g_stop="8137" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="167" r_length="104" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="253" r_length="86" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="365" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="450" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="492" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E475137" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8197" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATCTCTACTTTACCCTTCAAATTTTA-CACTGTTTCATCTTCTTCACAACAA-CAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATG-CAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTG-CTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAG</genome_strand>
        <mrna_strand>GGAAAATTCTCTGCTTTACCTTTCAAATTTTACCACTATTTCATCTTCTTCACAACAACCAAG....................................................................................................................................................ATGCCAAACCAAAATCCGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGTACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGCGACACTTACTACATTGCTCATGTGAAGAATGCCTGTGCCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGACTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTCCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCCCGACCTGTCCTGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475304" ref_strand="+" ref_description="SGN-E475304 [cSTB-39-J20]">
      <seq>ggaaaattctctgctttacctttcaaattttacactatttcatcttcttcacaacaacaagatgcaaaccaaaatccgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtggtacttatccagctaaagaccactgcagccactgtggtttgtgcgacacttactacattgctcatgtgaagaatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagacttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgtccagagtgatccagaagatcgatttgctccccgacctgtcctggcaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8497" stop="4466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8197" g_stop="8137" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="164" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="249" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="361" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="446" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="488" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E475304" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8197" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAG</genome_strand>
        <mrna_strand>GGAAAATTCTCTGCTTTACCTTTCAAATTTTACACTATTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAATCCGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGTACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGCGACACTTACTACATTGCTCATGTGAAGAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGACTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTCCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCCCGACCTGTCCTGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334109" ref_strand="+" ref_description="SGN-E334109 [cTOD-21-G3]">
      <seq>cgtttcttactggaaaaatctctactttacccttcaaattttacactgtttcatcttcttcacaacaacaagatgcaaaccaaaacctgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtgggacttatccagctaaagaccactgcagccactgtggtttgtgtgacacttactacattgctcatgtgaataatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagatttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgttcagagtgatccagaagatcgatttgctcctcgacctgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8508" stop="4473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8208" g_stop="8137" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="175" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="260" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="372" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="457" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4773" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="493" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E334109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8208" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCT</genome_strand>
        <mrna_strand>CGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475237" ref_strand="+" ref_description="SGN-E475237 [cSTB-39-L23]">
      <seq>ggaaaattctctgctttacctttcaaattttacactatttcatcttcttcacaacaacaagatgcaaaccaaaatccgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtggtacttatccagctaaagaccactgcagccactgtggtttgtgcgacacttactacattgctcatgtgaagaatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagacttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgtccagagtgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8497" stop="4662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8197" g_stop="8137" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="164" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="249" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="361" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="446" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4803" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="452" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E475237" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8197" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCC</genome_strand>
        <mrna_strand>GGAAAATTCTCTGCTTTACCTTTCAAATTTTACACTATTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAATCCGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGTACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGCGACACTTACTACATTGCTCATGTGAAGAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGACTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTCCAGAG.............................................................................................................................................................TGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475214" ref_strand="+" ref_description="SGN-E475214 [cSTB-39-H19]">
      <seq>ggaaaattctctgctttacctttcaaattttacactatttcatcttcttcacaacaacaagatgcaaaccaaaatccgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtggtacttatccagctaaagaccactgcagccactgtggtttgtgcgacacttactacattgctcatgtgaagaatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagacttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgtccagagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8497" stop="4663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8197" g_stop="8137" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="164" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="249" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="361" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="446" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E475214" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8197" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAG</genome_strand>
        <mrna_strand>GGAAAATTCTCTGCTTTACCTTTCAAATTTTACACTATTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAATCCGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGTACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGCGACACTTACTACATTGCTCATGTGAAGAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGACTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334303" ref_strand="+" ref_description="SGN-E334303 [cTOD-21-G4]">
      <seq>cgtttcttactggaaaaatctctactttacccttcaaattttacactggttcatcttcttcacaacaacaagatgtaaaccaaaacctgatatcagtgaagattagagaagattggaggaaagaatctcgacctattcctcctggtgggacttatccagctaaagaccactgcagccactgtggattgtgtgacacttactacattgctcatgggaataatgcatgtgctttcttgggggatggcatgtctagaattgaagctttggaacctattgtccatggacgaggacggaaagaagattccttgtatgacatttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggaactcaatggacggtgatagtgacaactattgtcgtggatatgctaaaatctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8508" stop="4693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8208" g_stop="8137" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="175" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="260" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="372" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4993" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="430" r_length="58" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E334303" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8208" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGAT</genome_strand>
        <mrna_strand>CGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGGTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGTAAACCAAAACCTGATATCAGTGAAGATTAGAGAAGATTGGAGGAAAGAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGATTGTGTGACACTTACTACATTGCTCATGGGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAATTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGTATGACATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAACTCAATGGACGGTGATAGTGACAACTATTGTCGTGGATATGCTAAAATCTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336191" ref_strand="+" ref_description="SGN-E336191 [cTOE-10-G4]">
      <seq>gcgtttcttactggaaaaatctctactttacccttcaaattttacactgtttcatcttcttcacaacaacaagatgcaaaccaaaacctgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtgggacttatccagctaaagaccactgcagccactgtggtttgtgtgacacttactacattgctcatgtgaataatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8509" stop="4954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8209" g_stop="8137" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="176" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="261" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5254" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="313" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E336191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8209" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATG</genome_strand>
        <mrna_strand>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744656" ref_strand="+" ref_description="SGN-E744656 [GI|438120]">
      <seq>gtcgagcttagtaacgtgggcttgtaacccaagtggggatgttaaggtggtggaatattgggctgtcccagatggctgggcttggtgggctaatttctggcctgccctatccaagtacagagttggatcatgtggtccaattgaaagaatgggctactagattcctaaagtggggtggacccgtgaggctggtttcacagagcaacgaaaaacttccgctttgtgcagtggaaggataacggaccggtgccttccaagttccattaatgcctgatgggctgttctagttaaactaccacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="9638" stop="8735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9338" g_stop="9034" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E744656" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9338" e_stop="9034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTTTT</genome_strand>
        <mrna_strand>GTCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGTACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACC-CGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGTTCTAGTTAAACTACCACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744654" ref_strand="+" ref_description="SGN-E744654 [GI|438122]">
      <seq>gccgagcttagtaatgtgggcttgtaacccaaatgggggcattaatgtggtggaatgttgggctgtaccagatggttgggcttggtgggctaatttctggcctgccctatccaagcacagagttggatcatgtggtccaattgaaagaatgggctactagattcctaaagtggggtggaccgcgtgaggctggtttcacagagcaacgaaaaacttccgctttgtgcagtggaaggataacggaccggtgccttccaagttccattaatgcctgatgggctgctccaattaaaccaccactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="9638" stop="8735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9338" g_stop="9035" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E744654" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9338" e_stop="9035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTTT</genome_strand>
        <mrna_strand>GCCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744658" ref_strand="+" ref_description="SGN-E744658 [GI|440157]">
      <seq>gccgagcttagtaacgtgggcttgtaacccaagtggggatgttaaggtggtggaatattgggctgtcccagatggctgggcttggtgggctaatttctggcctgccctatccaagcacagagttggatcatgtggtccaattgaaagaatgggctactagattcctaaagtggggtggaccgcgtgaggctggtttcacagagcaacgaaaaacttccgctttgtgcagtggaaggataacggaccggtgccttccaagttccattaatgcctgatgggctgctccaattaaaccaccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="9638" stop="8736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9338" g_stop="9036" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E744658" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9338" e_stop="9036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTT</genome_strand>
        <mrna_strand>GCCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734769" ref_strand="+" ref_description="SGN-E734769 [LB13CB10]">
      <seq>gaattaacaaaagccctgtcagttgaatcatctcagtgctctacattgaaggagttaaacaaggacttaactcggaagcttgaagttcaaacacaaagattggagcttttaactgctcaaagcatggcaaatgataacagccaagcaagacaaccagatgcggtatctgtacatgacaatatgccatattctgatgagaatatgccatatgctgatgaaggagatgaggtggtggaacgggtattgggatggatcatgaaactatttcctggagggccaccaagacgacgaactagcaagcttctttaatctccatggcaagcgaacaatgatgagttatccctgcgaaaagctggtctttttcttctctccagccctgcatttttgtagccaaacggagtctggattttgtacattatccatggtttatacacacacattgcattcttttcccccagaagaagcaaattgtatctaagaggcattttggaagatggaatagctgttctcgacagttttggcaataaaacatgaccgtgttgtttacaagagaattcgtttatcaaacattgtaatgaagatcaagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgtttcttacttttcatgtggaaatgatgtttagatcttttgacattgtattccttgtgttgtatttgttgaaagctggggcttaagaaaagcccaatatatcaaaaagatgattttggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="12875" stop="10730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12575" g_stop="12525" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12524" i_stop="12149" i_length="376">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12148" g_stop="11972" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="228" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11971" i_stop="11552" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11030" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="750" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E734769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12575" e_stop="12525"/>
          <exon e_start="12148" e_stop="11972"/>
          <exon e_start="11551" e_stop="11030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAGGTAATTTGACATATCTTGCTCTGTAAGGCTTTAACTGATATGGCTTCTAATTTACTGCTTTTGGAGTGCTAATAAAATGCCAACCTTTTAAAAATCTTTTGTTGCCTTTCTACTTACAAATTAATAGTTCTGCACTTCTGCTGTTACCTTTTTTTAGCAAATGGAACTTCAAGTTTCAGTAAGAGGGGACACAATAAATGACAAGGCCTTTATTCTCTAGGCTGCTCTACGCAAAGGCTATTTTGTTCACTTGAAACTGTAACTATTGCACTAGATCTGCTCATATGCGCTGACCTAGTATGGCCCTGCTTGCACGGTGGTGCATATTGCCAAGCTGATAGTATCCAGTTTGATTAGTTTGGTGATTGTTGTAATCTCTCCTTCTGTTCATTTTTCTCTTTTGCTTCTCGTTTTGATCAGGTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCTGT</genome_strand>
        <mrna_strand>GAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220759" ref_strand="+" ref_description="SGN-E220759 [cLEL-22-E19](-)">
      <seq>ctgcgaaaagctggtctttttcttctctccagccatgcatttttgtagccaaacggagtctggattttgtacattatccatggtttatacacacacattgcattcttttcccccagaagaagcaaattgtatctaaaaggcattttggaagatggaatagctgttctcgacagttttggcaataaaacatgaccgtgttgtttacaagagaattcgtttatcaaacattgtaatgaagatcaagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgtttcttacttttcatgtggaaatgatgtttagatcttttgacattgtattccttgtgttgtatttgttgaaagctggggcttaagaaaagcccaatatatcaaaaagatgattttggctgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="11737" stop="10730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11437" g_stop="11032" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="427"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E220759" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11437" e_stop="11032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</genome_strand>
        <mrna_strand>CTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCATGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAAAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232519" ref_strand="+" ref_description="SGN-E232519 [cLEL-5-G17](-)">
      <seq>ggcattttggaagatgaaataactgttctcgacagttttggcaataaaacatgaccgtgttgtttacaaaagaattcgtttatcaaacattgtaatgaagatcaagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgtttcttacttttcatgtggaaatgatgtttagatcttttgacattgtattccttgtgttgtatttgttgaaagctggggcttaagaaaagcccaatatatcaaaaagatgatttaggctgtaaaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="11599" stop="10730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11299" g_stop="11032" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="271" polyA_stop="289"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E232519" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11299" e_stop="11032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</genome_strand>
        <mrna_strand>GGCATTTTGGAAGATGAAATAACTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAAAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232299" ref_strand="+" ref_description="SGN-E232299 [cLEL-5-G17](-)">
      <seq>agttttggcaataatacatgaacgtgttgtttacaagagaattcgtttatcaaacattgtaatgaagatcgagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgtttcttacttttcatgtggaaatgatgtttagatcttttgacattgtattccttgtgttgtatttgttgaaagctggggcttaagaaaagcccaacatatcccaaagatgattttggctgtaaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="11566" stop="10730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11266" g_stop="11032" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="238" polyA_stop="256"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E232299" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11266" e_stop="11032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</genome_strand>
        <mrna_strand>AGTTTTGGCAATAATACATGAACGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCGAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAACATATCCCAAAGATGATTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541316" ref_strand="+" ref_description="SGN-E541316 [TUS-62-A19](-)">
      <seq>attttggacagtttagtctcggaagttggtcaccagccattcctccagatcagattaggatgatccaaaacattaatacattaatttctgagttagccttggagaaagacgaattaacaaaagccctgtcagttgaatcatctcagtgctctacattgaaggagttaaacaaggacttaactcggaagcttgaagttcaaacacaaagattggagcttttaactgctcaaagcatggcaaatgataacagccaagcaagacaaccagatgcggtatctgtacatgacaatatgccatattctgatgagaatatgccatatgctgatgaaggagatgaggtggtggaacgggtattgggatggatcatgaaactatttcctggagggccaccaagacgacgaactagcaagcttctttaatctccatggcaagcgaacaatgatgagttatccctgcgaaaagctggtctttttcttctctccagccctgcatttttgtagccaaacggagtctggattttgtacattatccatggtttatacacacacattgcattcttttcccccagaagaagcaaattgtatctaagaggcattttggaagatggaatagctgttctcgacagttttggcaataaaacatgaccgtgttgtttacaagagaattcgtttatcaaacattgtaatgaagatcaagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgtttcttacttttcatgtggaaatgatgtttagatcttttgacattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="13117" stop="10803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12817" g_stop="12726" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12725" i_stop="12594" i_length="132">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12593" g_stop="12525" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="161" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12524" i_stop="12149" i_length="376">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12148" g_stop="11972" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="338" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11971" i_stop="11552" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11551" g_stop="11106" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="784" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="797"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E541316" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12817" e_stop="12726"/>
          <exon e_start="12593" e_stop="12525"/>
          <exon e_start="12148" e_stop="11972"/>
          <exon e_start="11551" e_stop="11106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAGGTAGCATGATATCCTTGAGACTGATCATTTTCTGCTCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAGGTAATTTGACATATCTTGCTCTGTAAGGCTTTAACTGATATGGCTTCTAATTTACTGCTTTTGGAGTGCTAATAAAATGCCAACCTTTTAAAAATCTTTTGTTGCCTTTCTACTTACAAATTAATAGTTCTGCACTTCTGCTGTTACCTTTTTTTAGCAAATGGAACTTCAAGTTTCAGTAAGAGGGGACACAATAAATGACAAGGCCTTTATTCTCTAGGCTGCTCTACGCAAAGGCTATTTTGTTCACTTGAAACTGTAACTATTGCACTAGATCTGCTCATATGCGCTGACCTAGTATGGCCCTGCTTGCACGGTGGTGCATATTGCCAAGCTGATAGTATCCAGTTTGATTAGTTTGGTGATTGTTGTAATCTCTCCTTCTGTTCATTTTTCTCTTTTGCTTCTCGTTTTGATCAGGTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATT</genome_strand>
        <mrna_strand>ATTTTGGACAGTTTAGTCTCGGAAGTTGGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAG....................................................................................................................................TTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540701" ref_strand="+" ref_description="SGN-E540701 [TUS-61-B21](-)">
      <seq>agtaaactacaaatgcatagtggacatgggttcnnttggtcatatatggatgtctaattctaaatagccatcccctacaacatgctcagacattcttcttaatatccggccagctttgttgtagtgttagcaatagaagtctccttgcataagttttcttgatcttcacagctagtttgaaggcggatactaatagttcttctctctttataattgtcttgggggatttgcctttctgttcattttgggtataaaggagttaaacaaggacttaactcggaagcttgaagttcaaacacaaagattggagcttttaactgctcaaagcatggcaaatgataacagccaagcaagacaaccagatgcggtatctgtacatgacaatatgccatattctgatgagaatatgccatatgctgatgaaggagatgaggtggtggaacgggtattgggatggatcatgaaactatttcctggagggccaccaagacgacgaactagcaagcttctttaatctccatggcaagcgaacaatgatgagttatccctgcgaaaagctggtctttttcttctctccagccctgcatttttgtagccaaacggagtctggattttgtacattatccatggtttatacacacacattgcattcttttcccccagaagaagcaaattgtatctaagaggcattttggaagatggaatagctgttctcgacagttttggcaataaaacatgaccgtgttgtttacaagagaattcgtttatcaaacattgtaatgaagatcaagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="12705" stop="10849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12405" g_stop="11972" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11971" i_stop="11552" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11551" g_stop="11152" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="833" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="837" polyA_stop="849"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E540701" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12405" e_stop="11972"/>
          <exon e_start="11551" e_stop="11152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAACTACAAATGCATAGTTGGACATGGTTTC-TTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAGGTAATTTGACATATCTTGCTCTGTAAGGCTTTAACTGATATGGCTTCTAATTTACTGCTTTTGGAGTGCTAATAAAATGCCAACCTTTTAAAAATCTTTTGTTGCCTTTCTACTTACAAATTAATAGTTCTGCACTTCTGCTGTTACCTTTTTTTAGCAAATGGAACTTCAAGTTTCAGTAAGAGGGGACACAATAAATGACAAGGCCTTTATTCTCTAGGCTGCTCTACGCAAAGGCTATTTTGTTCACTTGAAACTGTAACTATTGCACTAGATCTGCTCATATGCGCTGACCTAGTATGGCCCTGCTTGCACGGTGGTGCATATTGCCAAGCTGATAGTATCCAGTTTGATTAGTTTGGTGATTGTTGTAATCTCTCCTTCTGTTCATTTTTCTCTTTTGCTTCTCGTTTTGATCAGGTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAAT</genome_strand>
        <mrna_strand>AGTAAACTACAAATGCATAG-TGGACATGGGTTCNNTTGGTCATATATGGATGTCTAA-TTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540704" ref_strand="+" ref_description="SGN-E540704 [TUS-61-B21]">
      <seq>tccctctaattttgtcccatcatctttgttcccttaaaaatcaaggcatatttattaactaataactaaaatattgcactacttggaatgactacagttagccttggagaaagacgaattaacaaaagccctgtcagttgaatcatctcagtgctctacattgaaggtaacttgaactcatgtgctagacagcaacatcattctaatcggcttcactttttttgtgtgtagttaagatcttcacctggaactttggatttctttctgtttccctttgtatctttgagtaaactacaaatgcatagttggacatggtttctttggtcatatatggatgtctaatttctaaatagccatcccctacaacatgctcagacattcttcttaatatccggccagctttgttgtagtgttagcaatagaagtctccttgcataagttttcttgatcttcacagctagtttgaaggcggatactaatagttcttctctctttataattgtcttgggggatttgcctttctgttcattttgggtataaaggagttaaacaaggacttaactcggaagcttgaagttcaaacacaaagattggagcttttaactgctcaaagcatggcaaatgataacagccaagcaagacaaccagatgcggtatctgtacatgacaatatgccatattctgatgagaatatgccatatgctgatgaaggagatgaggtggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="12990" stop="11670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12690" g_stop="11972" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11971" i_stop="11815" i_length="157">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11814" g_stop="11807" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="727" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E540704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12690" e_stop="11972"/>
          <exon e_start="11814" e_stop="11807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAGGTAATTTGACATATCTTGCTCTGTAAGGCTTTAACTGATATGGCTTCTAATTTACTGCTTTTGGAGTGCTAATAAAATGCCAACCTTTTAAAAATCTTTTGTTGCCTTTCTACTTACAAATTAATAGTTCTGCACTTCTGCTGTTACCTTTTTTTAGCAAATGGA</genome_strand>
        <mrna_strand>TCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG.............................................................................................................................................................GTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541319" ref_strand="+" ref_description="SGN-E541319 [TUS-62-A19]">
      <seq>atgcgaatgtacaattggaatgtaatgctgctgatgagcgtgccaagttattggcttctgaagtgattggcttggaagagaaggcacttcgtctaagatctaatgagcttaagctggagaaagaattggagaagtcacaagctgaaatgtcttcttacaaaaagaaaatcgcaagccttgaaaaagatcgtcaagatctgcaatcaacaatcgatgctttaaaggaagaaaagaagctcttgcaatccaaattcctaatagcttctgctaatggaaagtcagttgatcctagcaggaatatgcctacaaaaatagatgtatcaacttctacagaggatctccgtgaagataatattgcaagtggcaccataaatgatactaatttggttggtattgatggccccaccacatcttccctgcccgattttggacagtttagtctcggaagtttgtcaccagccattcctccagatcagattaggatgatccaaaacattaatacattaatttctgagttagccttggagaaagacgaattaacaaaagccctgtcagttgaatcatctcagtgctctacattgaaggagttaaacaaggacttaactcggaagcttgaagttcaaacacaaagattggagcttttaactgctcaaagcatggcaaatgataacagccaagcaagacaaccagatgcggtatctgtacatgacaatatgccatattctgatgagaatatgccatatgctgatgaggagatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="14927" stop="11672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14627" g_stop="14545" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14544" i_stop="13968" i_length="577">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13967" g_stop="13891" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="160" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13890" i_stop="13392" i_length="499">
            <donor d_prob="0.382" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13391" g_stop="13324" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="228" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13323" i_stop="13124" i_length="200">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13123" g_stop="13010" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="342" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13009" i_stop="12899" i_length="111">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12898" g_stop="12726" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="515" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12725" i_stop="12594" i_length="132">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12593" g_stop="12525" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="584" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12524" i_stop="12149" i_length="376">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12148" g_stop="11972" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="760" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E541319" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14627" e_stop="14545"/>
          <exon e_start="13967" e_stop="13891"/>
          <exon e_start="13391" e_stop="13324"/>
          <exon e_start="13123" e_stop="13010"/>
          <exon e_start="12898" e_stop="12726"/>
          <exon e_start="12593" e_stop="12525"/>
          <exon e_start="12148" e_stop="11972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAGGTAATTAAATGCAGTATTCTCGTCTGTTGACCAAAATAATTTCGTAGGAATGTCTATACCAGAATAATTGTCAGGCATGTAGTGAGTTTATTAATTTTAATCCTACATGTAGTTATCCTCTTTGTTACTGGTTTCACATTTAAATTTGAAAGTTGTTCAACTTGATTACCATATATCATAGATTGAATCAGTGTAATGTCATTTACATTTTAAAATTATAAGTTAGTGAGAGTCGAGTGTATAAATAAGTTAACCAGATTGATCCGTGAGATAAGGAATTATAGACTCTGTATTCACCATCAGTTGTTTGGTTTTGAGCTATAAGTCGGATTTGAGATGTCAAACCAGTGTTTTCCTGTTCCTTTTGGGTAAGTGGATGTTGGTTCTTTTTTTCGTTTTTCCTTTTTCGTGTTGCCAGCAAAATATGAACAGTCACTTTTGTGCCTGTTCTTTCTTTTTATTTTTCCCATTCTGTTTGAGACTCTTTTATCGGTCAGATCTTTTTTCTTTTTTAAATTTGTTAATGAGATAGATTATCTTTTCTGCTCTTTATATTTTTGTTTAAAATATTTTGTAGGCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAAGTATGTTTGAGGCTAGACTGTAAATTAATCAAGGCTGTCATGTGCCCATGCAACTCTGTTCTGGTTATAGTTGTCCTTTTATTCTATATTCTGTTTTTCTCCTTCCTGTCCTTTTGACATCACACCCTTTTAGAGTGGGCATGACTCTTTTCTTTTTGGTTTAAGAGGGAGGTGACTTGTGTGGCTTAATTGCTTCTTGGAGATGTAAGTACAAATAGTTTTATGAATATGAAAAGGATGTGCCAAATGGCAGCAGAATGTATTGCTTTTAGTTATGATACCTTTAAAAGATTTGTGGCTCTGAAAGTAAGTAGTTGGGAATCATATTGAGTAGTTGCATGTACACAAGCTCATACTAATTTGGCATAAAAGTTTTAGCATTGATGTAATGTGCGTGAATGAATATCAGAATAAAAAAATTAAATCTTATTCTCGTTAAACTGCAGATTTCTGTTGGGATGTGTTTTTATCTCATCCAACTTTCTCTATCTTCTTGCAGAAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAGGTAAGATATGGTTATATCTGCTTGTGCCTAGAGAAAAGGGTGGTTTGCGTTTTTCATGAGATGTGTCATTTTTGCAATTTTTCCATTTTCACTGCCTTAAAGTTTCTTAAATAAGCATCCCAGGCTTGATAAAAACATCCAACTATCAGAAATGAAATCAATGATTCCTCTCTGTTTCTCTATTGTCTTCTTCTAAACAGAAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCCGTATGTATTTCAGATTTCTCAAATTACTGCGACATATTGTTTTTCAGTTTTTTTTTAAAAATTATCTTTTGCTTTATATATATTCATAGAATTCAATTTGTGTCCATTCAGGTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAGGTAGCATGATATCCTTGAGACTGATCATTTTCTGCTCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG</genome_strand>
        <mrna_strand>ATGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAG........................................................................................................................................................................................................AAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCC...............................................................................................................GTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAG....................................................................................................................................TTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATG-AGGAGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291699" ref_strand="+" ref_description="SGN-E291699 [cLET-6-G10]">
      <seq>ccctctaattttgtcccatcatctttgttcccttaaaaatcaaggcatatttattaactaataactaaaatattgcactacttggaatgactacagttagccttggagaaagacgaattaacaaaagccctgtcagttgaatcatctcagtgctctacattgaaggtaacttgaactcatgtgctagacagcaacatcattctaatcggcttcactttttttgtgtgtagttaagatcttcacctggaactttggatttctttctgtttccctttgtatctttgagtaaactacaaatgcatagttggacatggtttctttggtcatatatggatgtctaatttctaaatagccatcccctacaacatgctcagacattcttcttaatatccggccagctttgttgtagtgttagcaatagaagtctccttgcataagttttcttgatcttcacagctagtttgaaggcggatactaatagttcttctctctttataattgtcttggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="12989" stop="11879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12689" g_stop="12179" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E291699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12689" e_stop="12179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGA</genome_strand>
        <mrna_strand>CCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296755" ref_strand="+" ref_description="SGN-E296755 [cLET-26-C15]">
      <seq>tgcgaatgtacaattggaatgtaatgctgctgatgagcgtgccaagttattggcttctgaagtgattggcttggaagagaaggcacttcgtctaagatctaatgagcttaagctggagaaagaattggagaagtcacaagctgaaatgtcttcttacaaaaagaaaatcgcaagccttgaaaaagatcgtcaagatctgcaatcaacaatcgatgctttaaaggaagaaaagaagctcttgcaatccaaattcctaatagcttctgctaatggaaagtcagttgatcctagcaggaatatgcctacaaaaatagatgtatcaacttctacagaggatctccgtgaagataatattgcaagtggcaccataaatgatactaatttggttggtattgatggccccaccacatcttccctgcccgattttggacagtttaatctcggaagtttgtcaccagccattcctccagatcagattaggatgatccaaaacattaatacattaatttctgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="14926" stop="12424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14626" g_stop="14545" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14544" i_stop="13968" i_length="577">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13967" g_stop="13891" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="159" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13890" i_stop="13392" i_length="499">
            <donor d_prob="0.382" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13391" g_stop="13324" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="227" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13323" i_stop="13124" i_length="200">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13123" g_stop="13010" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="341" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13009" i_stop="12899" i_length="111">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12898" g_stop="12726" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="514" r_length="173" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E296755" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14626" e_stop="14545"/>
          <exon e_start="13967" e_stop="13891"/>
          <exon e_start="13391" e_stop="13324"/>
          <exon e_start="13123" e_stop="13010"/>
          <exon e_start="12898" e_stop="12726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAGGTAATTAAATGCAGTATTCTCGTCTGTTGACCAAAATAATTTCGTAGGAATGTCTATACCAGAATAATTGTCAGGCATGTAGTGAGTTTATTAATTTTAATCCTACATGTAGTTATCCTCTTTGTTACTGGTTTCACATTTAAATTTGAAAGTTGTTCAACTTGATTACCATATATCATAGATTGAATCAGTGTAATGTCATTTACATTTTAAAATTATAAGTTAGTGAGAGTCGAGTGTATAAATAAGTTAACCAGATTGATCCGTGAGATAAGGAATTATAGACTCTGTATTCACCATCAGTTGTTTGGTTTTGAGCTATAAGTCGGATTTGAGATGTCAAACCAGTGTTTTCCTGTTCCTTTTGGGTAAGTGGATGTTGGTTCTTTTTTTCGTTTTTCCTTTTTCGTGTTGCCAGCAAAATATGAACAGTCACTTTTGTGCCTGTTCTTTCTTTTTATTTTTCCCATTCTGTTTGAGACTCTTTTATCGGTCAGATCTTTTTTCTTTTTTAAATTTGTTAATGAGATAGATTATCTTTTCTGCTCTTTATATTTTTGTTTAAAATATTTTGTAGGCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAAGTATGTTTGAGGCTAGACTGTAAATTAATCAAGGCTGTCATGTGCCCATGCAACTCTGTTCTGGTTATAGTTGTCCTTTTATTCTATATTCTGTTTTTCTCCTTCCTGTCCTTTTGACATCACACCCTTTTAGAGTGGGCATGACTCTTTTCTTTTTGGTTTAAGAGGGAGGTGACTTGTGTGGCTTAATTGCTTCTTGGAGATGTAAGTACAAATAGTTTTATGAATATGAAAAGGATGTGCCAAATGGCAGCAGAATGTATTGCTTTTAGTTATGATACCTTTAAAAGATTTGTGGCTCTGAAAGTAAGTAGTTGGGAATCATATTGAGTAGTTGCATGTACACAAGCTCATACTAATTTGGCATAAAAGTTTTAGCATTGATGTAATGTGCGTGAATGAATATCAGAATAAAAAAATTAAATCTTATTCTCGTTAAACTGCAGATTTCTGTTGGGATGTGTTTTTATCTCATCCAACTTTCTCTATCTTCTTGCAGAAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAGGTAAGATATGGTTATATCTGCTTGTGCCTAGAGAAAAGGGTGGTTTGCGTTTTTCATGAGATGTGTCATTTTTGCAATTTTTCCATTTTCACTGCCTTAAAGTTTCTTAAATAAGCATCCCAGGCTTGATAAAAACATCCAACTATCAGAAATGAAATCAATGATTCCTCTCTGTTTCTCTATTGTCTTCTTCTAAACAGAAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCCGTATGTATTTCAGATTTCTCAAATTACTGCGACATATTGTTTTTCAGTTTTTTTTTAAAAATTATCTTTTGCTTTATATATATTCATAGAATTCAATTTGTGTCCATTCAGGTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAG</genome_strand>
        <mrna_strand>TGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAG........................................................................................................................................................................................................AAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCC...............................................................................................................GTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAATCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323552" ref_strand="+" ref_description="SGN-E323552 [cTOC-2-I21]">
      <seq>tcctgaagttgggagaaatgttgctggtgtgggatctaataattttgtagtgcctgataaaggatacagccagttaaacagctctgctcttcactcaactaaaacttcttcttggacatcggactccaagtatgatggttttagttttgatgctagaagttcttctagttactcacagatgtccccgcccacagctggggcgactgggaggagaactccctctttccttgattccatgaacatttcaaaagtctctgctgcatcccctccctcaatcggatcagttactacagacacatatgactcaatggcttaccctagggacactctgggtttatcaagttctgagaacttaacaaattcttcaaaaaattctggtaatgggactgttctgtacaagcatgctgttgagaaagatatgggcaatttggacaacagacatccattttattcacagaagcaaaatgaagattttgctgcgttagaacagcatattgaagatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="19271" stop="16797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18971" g_stop="18482" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18481" i_stop="17114" i_length="1368">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17113" g_stop="17097" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="507" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E323552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18971" e_stop="18482"/>
          <exon e_start="17113" e_stop="17097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGAAGTTGGGAGAAATGTTGCTGGTGTGGGATCTAATAATTTTGTAGTGCCTGATAAAGGATACAGCCAGTTAAACAGCTCTGCTCTTCACTCAACTAAAACTTCTTCTTGGACATCGGACTCCAAGTATGATGGTTTTAGTTTTGATGCTAGAAGTTCTTCTAGTTACTCACAGATGTCCCCGCCCACAGCTGGGGCGACTGGGAGGAGAACTCCCTCTTTCCTTGATTCCATGAACATTTCAAAAGTCTCTGCTGCATCCCCTCCCTCAATCGGATCAGTTACTACAGACACATATGACTCAATGGCTTACCCTAGGGACACTCTGGGTTTATCAAGTTCTGAGAACTTAACAAATTCTTCAAAAAATTCTGGTAATGGGACTGTTCTGTACAAGCATGCTGTTGAGAAAGATATGGGCAATTTGGACAACAGACATCCATTTTATTCACAGAAGCAAAATGAAGATTTTGCTGCGTTAGAACAGGTATTTTTACATCTTCTGCAGAGTATGCACAGTGTTGTCTTAAGCCCTGAAGCAAGGCACGGAACTTGTTGAGCACTTCGCCTCGCTTTGTGGGCACTTCAGTGTTGTCATCAATGCTCTATGGCATGCTTTTCCATGCCCAAGTAGTGTAATCCTGAAGATGTGACACTAATCAATTGATATTTCTCTTTATCTAGTTTTTTCAATTTCTTTGTCCATAGATTTATTATTCATGCTTGTTGGACTACACATGCATATTTGTACTTTTTCTTCATTTGTGCCTTTTTCCAATGAAGCCCCCAAAGGACCTTAGAGTTTTTTTGGGCTTTTCGATTTTGATAACACTGGGTATACACTATACAATTGTGGAACGCCCATTTAACTACAAAAATTCAGTCTGCTATTGATGGAAGAAAGAAACAAATAAGACTGACGTCTGGTTTTTTTCCTTAGATTAAAAAATTTATGAAAACACAAAAACAATATACGTTATTCTCAAGGTTGTCTTTTGGAGTAATAAACATATGATCTCTATTTAATAGAAGACTTAAAGTTTTAGAGAATTTTCTAAAATAGCTTACACTCTCTAACGTGTGTAAATAATCCAGCCACTTCAAGAGATTCATTGTCTAGATCTTTGTTAATTTGTACCTTGTCATATATGTGGTAGGTGCAAGTAGCAAATTTGGGTCCTGCTACGAAACCAGGTTGGTATTCAAGTGGGGAAGGCTGGAGGAGTGAGGCCATTACCTATCGAACTTTCTAAATTAAATACGACGGTTTTGTCGATTATTTTAAAAATATATGCATACATATTTAGTCTGTGCATGTACAATTTAAGCTGAAAAAAGAGAAATGATATCGGTATGTTCAATGTCTTGAAAAGGTAACTTGATGTGAACTGAACGCTGCCCAATTGTTTCTCTTCTTTGATTGTGAAATATAGAATGTCCTGTGTGTTTATAAAGGTAAAAGAGTTTTTTGTACACTGATCAGTTACAAATAATAAAAGGACATCTTTGTCACTTCATTCAGATAATACTGTCAAGATTTATGAAAATCCCACATATTTGTTTAATTTTTGTTCCAGATGGAGAATGGTCCCATGCATTTGTACATGTCTAGCGGTTATGGAGCTAAAAAAAAAGAGAGGATAGTCATTTATGATGTATACTAATAATTAGAGCACACTTATCTTCATCTTTCAGATGATATCCTAAATCACAAATGGTATCCTCCATTTCCATAGAGGGGTGGGCTGCCTATCAAAATACTGGGACATGCATAACACATATTTGTCAGGATGTAGATTGTGTAATAGGATCTTTAGTGGTACACACTAACATGCTTTATGCTTATTTTCCACAGCATATTGAAGATTTAAC</genome_strand>
        <mrna_strand>TCCTGAAGTTGGGAGAAATGTTGCTGGTGTGGGATCTAATAATTTTGTAGTGCCTGATAAAGGATACAGCCAGTTAAACAGCTCTGCTCTTCACTCAACTAAAACTTCTTCTTGGACATCGGACTCCAAGTATGATGGTTTTAGTTTTGATGCTAGAAGTTCTTCTAGTTACTCACAGATGTCCCCGCCCACAGCTGGGGCGACTGGGAGGAGAACTCCCTCTTTCCTTGATTCCATGAACATTTCAAAAGTCTCTGCTGCATCCCCTCCCTCAATCGGATCAGTTACTACAGACACATATGACTCAATGGCTTACCCTAGGGACACTCTGGGTTTATCAAGTTCTGAGAACTTAACAAATTCTTCAAAAAATTCTGGTAATGGGACTGTTCTGTACAAGCATGCTGTTGAGAAAGATATGGGCAATTTGGACAACAGACATCCATTTTATTCACAGAAGCAAAATGAAGATTTTGCTGCGTTAGAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGAAGATTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724619" ref_strand="+" ref_description="SGN-E724619 [FC24CF09]">
      <seq>agggcgattggcggccaatcggccgaattgataataaaaaaattgattataagaatttgagttctctttcaatggaaattagtttttcttccttattgtttttatcatttttgttattttttcatcaaacaaatgctattactgtccatatagttgatggtattgcaaaaaatgatccccaattgatatttcgctgtaaatctcataaagacgatctcggaacgcatcatcccaaattcaacgatgattttcatttctcgttcaaaaaagatttttttttcgagacggtgttcttttgtcatttctggtggggtaaaaaaaatatctcatttgaagtgtatagagaaactggagcttgtgggcatgaaacaggaggatctaacaaaggaatatgttattggttagttaaagaaaacggtttttattttgctatcaatgacaatcctcctccatcttcttttgttaaacaatttggttggtaaaaaaattaatgtaatttaatatttgttatctaattacattatgaaatgaaaaaagaaatttattatgactatgacacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="29393" stop="27565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29088" g_stop="28561" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="558" r_length="528" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28560" i_stop="28012" i_length="549">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28011" g_stop="27983" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="587" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27982" i_stop="27916" i_length="67">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27915" g_stop="27863" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="640" r_length="53" r_score="0.811"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E724619" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29088" e_stop="28561"/>
          <exon e_start="28011" e_stop="27983"/>
          <exon e_start="27915" e_stop="27863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAAAAAAATTGATTATAAGAATTTGAGTTCTCTTTCAATGGAAATTAGTTTTTCTTCCTTATTGTTTTTATCATTTTTGTTATTTTTTCATCAAACAAATGCTATTACTGTCCATATAGTTGATGGTATTGCAAAAAATGATCCCCAATTGATATTTCGCTGTAAATCTCATAAAGACGATCTCGGAACGCATCATCCCAAATTCAACGATGATTTTCATTTCTCGTTCAAAAAAGATTTTTTTTTCGAGACGGTGTTCTTTTGTCATTTCTGGTGGGGTAAAAAAAATATCTCATTTGAAGTGTATAGAGAAACTGGAGCTTGTGGGCATGAAACAGGAGGATCTAACAAAGGAATATGTTATTGGTTAGTTAAAGAAGACGGTTTTTATTTTGCTATCAATGACAATCCTCCTCCATCTTCTTTTGTTAGACAATTTGGTTGGTAAAAAAATTAATGTAATTTAATATTTGTTATCTAATTACATTATGAAATGAAAAAAGAAATTTATTATGACTATGACAATTCTTATAGTGGCTCTATTTCATTTTAATTAATTAAATATGTTTTGCGATTCATCAAAATGATCGAGAGATTGAAATTTTGATATTATGAATATAGTTGAGTTATTAAGGAAAAAATTAATTTATAATTGAGATGCGGTTCTCCTCGTCGCATCATCTCCTCTTACTCAATCAACTAAAAATTAAATTAGGTCGAATGAATTTCTTTTTTATTTTTTCCCCCCGTCTTAAAAGGGCTTTTTCTTTGCCAATTAAAGAAAACCTTCCAGGGAATTTTTTTTTTTGCTAATTACCCCACTTCTTTTTTTACACCAAGACAAAAATTCCACAAAATTTTTGAAACCCCCATTTTCCTCATAAAATGGTCCCTCCTTTCCCCAAATCAAACCAAACAAATTAATAACGAAAACCAAAATTTTTAAAACAAAGCCCCTTTCGTTTTATTTAAATTTTTTTTGTTTTTGTTATAGAAAGGCGTTTTTTTAAAAAAATGCACCACCAAAAAAAAAACAGCTGTGTTTGTTTATTTTAAGTTCCGCCCCCCCCCCCCAAAAAAAAAATAAAAAAAAAAAAAAAAATTTCCCATTTTCCCCTTATACCCCCTGGCGACTTTGTGTTGTGTAGAGGTTATTTTTCTCCCCCTGTAAAAACAAAAAAAAAAAAAAAAAACAAAAGAACAAAAAAAAAATATATATATT</genome_strand>
        <mrna_strand>ATAATAAAAAAATTGATTATAAGAATTTGAGTTCTCTTTCAATGGAAATTAGTTTTTCTTCCTTATTGTTTTTATCATTTTTGTTATTTTTTCATCAAACAAATGCTATTACTGTCCATATAGTTGATGGTATTGCAAAAAATGATCCCCAATTGATATTTCGCTGTAAATCTCATAAAGACGATCTCGGAACGCATCATCCCAAATTCAACGATGATTTTCATTTCTCGTTCAAAAAAGATTTTTTTTTCGAGACGGTGTTCTTTTGTCATTTCTGGTGGGGTAAAAAAAATATCTCATTTGAAGTGTATAGAGAAACTGGAGCTTGTGGGCATGAAACAGGAGGATCTAACAAAGGAATATGTTATTGGTTAGTTAAAGAAAACGGTTTTTATTTTGCTATCAATGACAATCCTCCTCCATCTTCTTTTGTTAAACAATTTGGTTGGTAAAAAAATTAATGTAATTTAATATTTGTTATCTAATTACATTATGAAATGAAAAAAGAAATTTATTATGACTATGACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717117" ref_strand="+" ref_description="SGN-E717117 [FB18DH07]">
      <seq>gaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagttgattcagatcgttttttaatgaataggcgtccttcatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccgggggggggggggggggccccttttccccttaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48424" stop="27591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45687" g_stop="45672" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45671" i_stop="44717" i_length="955">
            <donor d_prob="0.223" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="88" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44150" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="480" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44149" i_stop="35587" i_length="8563">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35586" g_stop="35556" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="511" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35555" i_stop="35158" i_length="398">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35157" g_stop="35103" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="566" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E717117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45687" e_stop="45672"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44150"/>
          <exon e_start="35586" e_stop="35556"/>
          <exon e_start="35157" e_stop="35103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAAATTATCCTTGAATGTTTCTGACAAATATTAAGTTATGCTAAAGATTGTTTTCCTAATTATTATTATCATTAGAGTACTTCTTTTTCACTTCCCTTTAACAGTAAATTGTCTTATTACTAATCCCATGGTGTTTGAGAACTACTACTACCCTATTAGTTTTACTAATCTCCGAAATTTCTCATTTTCACGCATCAGATTAGTGTATCACGTATAAAATGTAATGTATCTTATCAAACGATTAATGTATCTCGCGCATTACTTTGAATAAAGTAGCAACAATTAAAACTTGCAAAACTTATTAATATCAACAAAATATACTTTACAAAAGGCCTTACAATTATTCAAACAAACATCTCCATAGTTTGGCTTCAAAGTAGAAACTACTGTAGAGGCCTAGTGAAGTAGAAACAAAGGTCCAGTGCCATCTTTTTTATCAGCATCTGGTATGCTCTTGTAGGTACAAAAGTTGTTAGAGATCTCCCAGCTCCAATCTTCCTTCCTTGTCACATACATAGGCGGCCAACGGTTTATCCTCACGTAGTGTTCTCTTATATTTCCATCTGCAAGCAAGCTAGTTACTATGGAGTAGCAAGATTCATGACCACCCCATATCTTGTCATCTGGTTCTGCAGTCTGACTTCCATCTGGAAGAAAATAACGGCGCAGGGGACGTCCAGTTCCATTCCTGTAGGGATCGAGCATTCGCCAGTACTCAGGAGCCGCCTAAGGATTCGTCCACACAAGTAGTATAGGTTGTAGTTATACAAGGATTATGTTTTATCTTTGTTATCCTATGACGGAAACTAGCGAAAGGAAAGAGGGAAATCTGCTTCACTTCGTTTTTTTCACTCTCTTGTCAAACCAAAAAACTTCTCTTCCTTCCTCTAGTTTCCAATCAAAGCTTTATTGAATCCAGATGCATTAAACTGTGAAGAAATAGCAATCAAAGGCAGCAGCAGAAGTGGTTCAAATAGCACTTACAGGATACAGAACCATGCAAACCGTTTTCAATTTTGGCAAAAGCTCTATGAAACTGACCAGTGAAGAACAAAAAGTTAAACATAATGAACAAGAAATGAAGGTATTATGCAGTCTTACCAACTACTTGCAAAGCTACACAAAGACCGACCCTCAAACGGACGTTTTAACTTCAATCGTACAGATTTAAGTTTTCTCAAGCACGTACAAACTATATCTACTCAATTTGGTGCGAGCTGCAGCCATGCATGATTTATATGGGTGGATAATGCCTATTCATGGACTTCCAAAATTGGCAAGTAAGACTTAGAAAGAAGGAATATAAATAGGCTCATACCTCGGTGAAATGGAACTCCCACACATGATCATACAAATCCTCCTTTCTTATTCGCTTCTAAGAAAAATAATATATGAAGAAGTAACGTCAGACAAATCAAACGAAAAAGATTAACGTATATTGTATGTGGAAGTGCTAAGGAGAGAGTTCCAATACTCACACGTTTACCATCCATTACAGACAGTGAGTAAACGACCAACTTCGACAAATCATTTACTTTTGCTAACCGAGGTAAATGTGTTTTGCCTCGCCATAATTCTTCACACTACAAAGAGATGCCAAGAAAGATCATTGATCTGCTGTCATTGATCTGCTGTGAAGTTGTAATTAAATTTGCACATGACTTCATCTCTTCTTATTTAGAATTTACTGTTGTTTACTCGCTAAGAGCATGAAGGAAGAAAATAACGTCATTTTACAAAGGACGAACTCTGAATCATTAACATTTAGTGAAAGGAAACAACAAATACTGAGCAAAACTCATTTCACTTTTATGGAACTGTTGATGACTCCAAGAAAAACAGTATCATAATATTTTTTTTTCTCTTTATTTTCTTCATTAATAGTATCCGGATGCATGCACCTTGACTATGGTGCAGCCAGTCCAACTCGCAAGTATAAGCCACCATGGTAATCCTACCACCATGACTTGAGTAGATGGTCCCACACAAGCAGTGTTATAACTAAGACTGAAACCTAGGATTTCCACATATTTATCCCAAAGCTCAATCTAATTTTCAACCCCTAGAAAGTCTACTTTCCTTTTAGGCTGATTGTTGGCGAGGCGGTGGTTCAAACTCCCAATATCGTGATGGTTCATAACCATTAATCTTCTAAGCTTTCAGAAGTAGATGGACTCACATCAAGTGTTTTAGTAGAGATTGAAGCCTGGGATGTCCACGTTGGTTCAACCAATTTTTCAAATCCCAAAAGAAGTTATCTTTTGGGCTGGTTATTGATGAGAAGGGGCCCAAACTTCCAACACCGTGGTTCATAGACACTAAGCTTCTAAGCTTTCAGAAGGCCATATTCCACAATCGAAATTTCTTATGGAGTCGTCGAGTGTGTTGGCATAGTTCTCCTCATACATGACTTCCATAGTTTTCCTTGAAACACTAACTGGTTACTACTAATTCTACCACTTAATCTGCAGTTTGTTTGCAAGTCATTTCCTTTTCTAGCTCCGCTTTTTAGCTTTAAGTCTAAGACACTATACCTATATTGGGCGGTCATTGGTCTTCCTGGAATAACCTTACAGCTTGAAATGAACTTCTATCACATGTTTATTTGACTATGGTTACCTCCAGTTTCATAAGTTACTCGGTGATAATTTCCCTTTCTTAAAATATGTAATAGCTACCACCAAATCATAGGCTGCAGATTTTTTCTTTCCAACTCTTCAAAATCCAAAACTACTTTCTGACCACTAATATGATTCAATTAACACTAGCTACCACCACATCATATAAATAACTCACAAGTAGAAAGAGAATATGTAAGGTCTTATTTGCTTGTTTGCGACGGGTAAAGGATGAAAATTCCTTTTGAGGGGGGTGATATTTAAAGATAACATAGCATAGTTTTAGCAAAGAGCACACAATGTGTATACTTGTAAGGGCTAAACTCCAGATCAAATGGGCAAGAAGATACACAAAGACAATGTGTTTTTTACATAATTTGTAGTCTCTAAGGGAAGACGTTAAAATAGAAGAAGATCCAATGTTCTTAGGAAAAGAAGATCCAATTTTAAGAATAGTCCCTGAAGAATTTATGTTCCAATACCTGGTAAAGCAATTAAGAGCAAGAAACATAAAGAGACAATTCATCTTCAACAATTTATCATCTTCCCAACAAACCAACTAGAAATGTTCAGAGAGGACCTGCAGCTGCAAGTGAAAATTGACCCAACAATAATGTAAAACTTGCAACAACAACAACATACCCCGTGTAATCCCACTTGGGTCCAGGGGGTGTAAAGTATATGCAGACGTTACCCCTATCTTTATGAGGTAGAGAGGTTATTTCCAATAAGACATTTCAAATCAGGTTAAAAAAATAGCAGAGGTGAAGAAACTATATCAAAATATTACAAAAAGCAAGAAAAAGCATTTTGAAAAAAAAAGGAACAGTAACTAAACAAACAATACAATAATCAAGTACATGAAACTACAGGAGTATTAGCACAGCAGGTAAGTGCCAAGAAATTTCATACTAGCTATTTCCACTACTGTCACCCCTAAGTATTTGCATTATTTGTGAGAGTTCGGTCATTTGAAGAAAAGACATTGGATTATACAAAGTGTTCCTAAAGCTATAATTTGACACAATCTGGTTGGCGGCATTTTTGAATTCAAAACATTAAGATTATTTGGATCATTGTTCCAATGTATCCCAACCTTTTAGCAAGTTCCAATTTAGAAGGCTGAAATAGTTAGGCTTTCATTAAGGTATACATAAGTACACATAGGAGTTTCTTGCAATACATAGAGGTTAGCATCGAATCACATGAAACTTTACTAGTATGGAAGGATTAGCAAGATAACACGCCACTTCTTACTAATAATCTACCCTAATCCATATTCTCCACAACCTCCTATCTAAGGTCATATCCTACGTCAGCATAACTATACCTCTATAGCCCACCTCCACACTAAGGCATCCGTCTACTCCTAAACTTACAACATAGTAAATGTTCTTGCTTTGATATACCAATTTTGATAAATAAGTAGTAAAAAAGCATTACAATTTGCGACTGAGGAGCGATTTCGGGGATAAAACCATATAACAAAAAAAACACAATTGTAGTAACAAAGTTTTGACATGAAATGAACCTTAATTTACCAAAATTGAATTTTGACAACTCAACTAAATGAAAGTTCAAACCTTGGAGCTCCAAATCTTATCAGAAGAAGCAACAGCCCTCCATCCACGAGATACAAGGAGACACAGTGCCACGCTGCGTGCGTCTAGACAGCTCAAAATCATCAACATAACATCTGTCCCAAGAACAACTAATGGATCACTCAACCAACCCATTTCACAAATTCTCCTTTTCTTCTTCCCTTTTTCTGCAAACCGATCTTCCAAGATTCCACCTTTATCATCTTCAACCCCAAAACAGGGCAACCCAGAAACCCCATCTTCACTACTCATGGTGGTCTTCTTTATATGACCAAACTCGCAGGTTCTGGTTTCTGTCATTGGAGGTGATTAGTAAAAGGGTGTCCAGAAAATCAAGAATCTTGAGCTGATTACTTCGCAAATAAGTCTTTTGGATTTTATAAGGCTGAGGCGGTGGCCGGCGGGGTTTGGGTTTTACCGGGGAGGGAGTTAGTTGTAATAAAACAACGTCAATACGCGTACGAAATTATTTTTGTTAGAAAATATTTTATTTTTTTTATTTGAATTTACTAAAACTTTATATATAGACATCAAAAATCAAAGATAAAATAAAAAATAAAAATACTCCTACAAGAAACTTGCACGTAGCTTAGTAAACAACTTTCTACATCAATTTGCGAGTAGCTTATAGAGCAATTTTATTTCGATAAGAAAAAGTCTATTCAATTCATTTGTACATCAATTCGAAAGAAAATTCTCTCGAATTCTTTTTAGCTATATCTCTTGTTGTTCCAAATTAATACATATTACAAAATTTAATTAGTGTTAGTAAAGAAGAAGAAGAAAAACACAAAGTTGCATAGAAGATTAATGAGTAAAACACATTTCTCGAATGATGAACAATTTTGAAAAAAATTATACGAGGACATTCGTAATGATTTGAGGAAATAATACGTATACAATAACGAATTTAAGACTTTTATTCATGAGATTTGAAAAATATAAATATAAATGTGTGATACATAAAGAAAATAAATACAATTCAAAAAAATAGTAATATATTTTATAAATAAAAAGAGTTAATTCTGTCAAAAGAGACTTTTTAGCTAAACTAAATAAAGATTATATATGTATTATAAAGAGACTTTTATATATTATATATTATTTTACGTATTGTTTTGTAGAATTAGAAAAAAATAATAGTATTTTTATAAGATTAGGAAAAAGAATTAAAATACTAATAATTAAGGATTTCAGCCTTCCAAAAAAAAGTATAATATAACAATAACAAATAACATATACAATTTTTTGAAAAAATAAAATATACGCAAATCACCTTATAATTTAATCTATTTCTCTTAAACTTTTTTTGGGACCAATTAGAATGATGTCAATTTTAACTCTGAAATCAAAATTGTTTCTTATGATTTATTTAAATCTTTAATTATGTCATAATTAATCATGATTGTACCTAAATAATATGATTATGTTTTCCATCTACTTTTTTATCATCAATCATGATTTTACCTAAATAATATGATCATATTTTCTATCTACTTTTTTATCATAAAAAGGACATCCATACAATTAAGTTTAATAATATTAATATATTAATATACATCAACTAAAAAGGGCAAAAGATATGGAATCTCATGTAGCAACTAGAAACAAAACATACTTATATCCTTTATCTTTGGATTTTAGTAATTTTATCGATAACAATAATATTCTCAATGAAAATTCACGAAATAGAGACTCAAAGAGATTTGAATATACATGAATTTATTATTATCTCGTGAAGGTTAAAAAGTTATTTTCAAAAGATCATGTACTTAAATATTGTAATTTTATCATATTATTACGTAATGTTATCAACATAATTTTCTTACACTGAAACACATCAGAACTTCGATGTTAAGATGTTTTAGCTATAGAAGTGATAGAATATTGTTGTTCCTATAAAACATGGTGACTAATTGATAATTACTCTTTCATATACTATTTAATCAGTGATCTTGAATTCTCGAGCTTGAGAACTGACTTCTGATGAGTATGAAATTGTCTTTGTTAAGAAACGTTTTATTCCTATGTGGATATCAAACACTTGATAAAAGATTATATATGTATTATAAATTATCTGATTTGTATTTTTATATCATTAGGTAGTACTTAAACTCTAATTTTTTTATTAAAAAAAAAAAACGCAAAGTGGTCCATGAAACTATAACATGATAATTTCATATATATAGGGCTTCTATTATTTCAATTATATGCATTAGAGTAAAGTTTTTTGTTCTTGTATTTATCAAAAATGGATGAAGTAAAACTCCATGGAACATCTTATAATTTGTTTACTTATAGGGTTATTTGGGCTTTAAAGCTAAAAGGAATACCATTTGAGTATATAGAAGAAGAACATTCAAATAATGGCTCTTTAATTATGAAATATAATCCAGTTTTTAAGAGATTTCCAATTCTTTTTCATGGTGAAAAAGTAATTTCTGAATCTATGGTGATTATTGAATATATTGAAGATACTTGGCCTCAAAATCCACTTCTTCCTATTGATCCTCTTGATAGATCCATTGCAAGATTTTGGGTTAAATTTGCTGGAGATAAGGTATGTCTTTTCATTTCGATACTCGTTTTAGAGCTAAACTAATCTGTTTGCAATATTTGATTGATCGATCACAATTCTATATATTCCATTTGACTATAGATGTTTTCAGTGAATTCATTAGAGGAACGTTTCCGATAAAAATTGTTTGTTCTTGCATATCCCTACTGTTTTTTCCAAATTAATCCCGCGGATACATATAATTCAGAAGAATATGTGAGTGATTCATACACATCATATCTTTCCTTTATCAAGGTTTTCAACCAATTGATATTTTTTCACAAATAATTGAAATTCAATTTCTTGATCTGTATCTTCAATTTTTAATTGGCATATCAATTTCATGAAAGTTTGACTTTAGAAAGTAACCTTTAAATAGATAATAGTAAAATATTTCGATTATGCCTGTATATCAAAAAGAATTTTACTTTAGAAGGTAACTTTTGCGGTATATAATATCAAAATAATTCAATATATATCAAAGAAACAATTCTATTATACCTACATATCAAAGAAAACATGAGGTTGTTACTTCAACAAGGTAATTTATCTTACCTAATATCGATGTGACACAACATTTTTTAAAAAAAAAATCACGATGATCGAAAATGAGATACTAATTAGATTTCATTTTCTGCGTTGTATCAACGTAAGGTGAGTTGTTGTTGACGTAGTCGTACTCACATAAGAAAAATATGATCCTTAACTTGGCGTTAATTGATAATTATGACCTTTAACTTTGGATATACACTTGCCAGACACTTAAACTTGTATAAAAAATTGATCAAATGAATACATTAGTCCTACATGACACCCTACAAGACAATTTTGTACTATACGTGGCATTTTACGTGTATTATGCCATGTAGGACACTTGTGTCCACTTGTTCTTATAAAAGTTGGAGGGCATTGTTCGTTGACGTCAAGTTAAAGGTCATGTTTATGTACTATCACTAAGAAAAAATTATATTTTTTGGCATCCTACATATGTTGTTCTTGGGATACGATCATATTTAATATTTCTCGTGATGTTTATTATAAACTTAAAGTTAGATAATCGTCTGTAAAACTAAATTATCTAGTTAAATTTTAAATCGATCTGTATCAATTATATTGTCATATAGGGTGCATGTGTCGGGACAATGTATTACACAAGTGGTGAAAAACAAGAAAAGGCCATCAAAGAAACAATGGAAATGCTCAAAATCATTGAAGAACAAGCCTTTATTGAAGATGAAGAAAATATTTTTTTTGGTGGTGAGAAAATTGGGATTGTGGACTTGGCTTTTGGAGTAATTCCTCATTGGCTTGAAATTATTGAAGATATTATTGGTGTGAAATTATTGGAACCTAATTTATTTCCTAATTTATTAAATTGGGTACAAAATTTCAAAGAAGAACAAATCATCAAAGAGAATCTCCCTAATTATGAAGAAATGTTTGTGTTTTTAAAGAATCCAAAAAAAATGAAATTGTCATCTTCTTGAAATTTTTAATTTGTCAAACTATGATAATAAAAAATTACTTTCTCCGTTTTAAAAGGGTTGGTAATGTTATTATTTTAATTCAATTAATTATCTTTTCATCTTTATTTTTTAACGAAAATCAAAAAATAATTTGAAAAAATTTGACCCTCATAAACCTAAAAATTACGAAAAAAAAGAAGAAAAAGAGTCCAAATTTCCAACTTTTTCCAACAAAAACAAGAAAAAAAAAAAAAAAAAAAAAACACCCTCTTACCACACAAAAAAATAGAAATTTGTCTTTCAAAATATCACAAACCCCCCCTCCAAACTGTTATAAAAAAGGGGAGGAAGAAAAAAGTGATCCACCAAATTGAAACCAAAATATTTAAGAAAAAAAAACCAAAAAGGAATATTGTACATATTAAGTGGGGAGAAAAAAAAAACAATAAAATAATAAAAATAAAATCATAAAATAATATTATTTTCTAAACGAAACACCAAACAAAAAAAAAAGAAAAATAAAATAAAAATTATATACATAATCCCTCGCGAATTATTATACTATCATCCCTCGGGGTGGGGCACCGGCCCAACAGCCGGCACAGCAAGGCAGGGAGGGAGGGAGGGGGGAGAAAGGGGGACAACTGCTACACTGGTTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GAAATAAGAAGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACCCGGGGGGGGGGGGGGGGGCCCCTTTTCCCCTTAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718220" ref_strand="+" ref_description="SGN-E718220 [FC04AB12]">
      <seq>gggcgattggcggccaatcggccgaattgctccattgaatcgccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatngttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48713" stop="27587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48418" g_stop="48109" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="332" r_length="309" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="404" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44187" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="759" r_length="355" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44186" i_stop="40697" i_length="3490">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.081" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40696" g_stop="40679" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="777" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40678" i_stop="39315" i_length="1364">
            <donor d_prob="0.709" d_score="0.00"/>
            <acceptor a_prob="0.655" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39314" g_stop="39278" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="814" r_length="37" r_score="0.730"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E718220" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48418" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44187"/>
          <exon e_start="40696" e_stop="40679"/>
          <exon e_start="39314" e_stop="39278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAAATTATCCTTGAATGTTTCTGACAAATATTAAGTTATGCTAAAGATTGTTTTCCTAATTATTATTATCATTAGAGTACTTCTTTTTCACTTCCCTTTAACAGTAAATTGTCTTATTACTAATCCCATGGTGTTTGAGAACTACTACTACCCTATTAGTTTTACTAATCTCCGAAATTTCTCATTTTCACGCATCAGATTAGTGTATCACGTATAAAATGTAATGTATCTTATCAAACGATTAATGTATCTCGCGCATTACTTTGAATAAAGTAGCAACAATTAAAACTTGCAAAACTTATTAATATCAACAAAATATACTTTACAAAAGGCCTTACAATTATTCAAACAAACATCTCCATAGTTTGGCTTCAAAGTAGAAACTACTGTAGAGGCCTAGTGAAGTAGAAACAAAGGTCCAGTGCCATCTTTTTTATCAGCATCTGGTATGCTCTTGTAGGTACAAAAGTTGTTAGAGATCTCCCAGCTCCAATCTTCCTTCCTTGTCACATACATAGGCGGCCAACGGTTTATCCTCACGTAGTGTTCTCTTATATTTCCATCTGCAAGCAAGCTAGTTACTATGGAGTAGCAAGATTCATGACCACCCCATATCTTGTCATCTGGTTCTGCAGTCTGACTTCCATCTGGAAGAAAATAACGGCGCAGGGGACGTCCAGTTCCATTCCTGTAGGGATCGAGCATTCGCCAGTACTCAGGAGCCGCCTAAGGATTCGTCCACACAAGTAGTATAGGTTGTAGTTATACAAGGATTATGTTTTATCTTTGTTATCCTATGACGGAAACTAGCGAAAGGAAAGAGGGAAATCTGCTTCACTTCGTTTTTTTCACTCTCTTGTCAAACCAAAAAACTTCTCTTCCTTCCTCTAGTTTCCAATCAAAGCTTTATTGAATCCAGATGCATTAAACTGTGAAGAAATAGCAATCAAAGGCAGCAGCAGAAGTGGTTCAAATAGCACTTACAGGATACAGAACCATGCAAACCGTTTTCAATTTTGGCAAAAGCTCTATGAAACTGACCAGTGAAGAACAAAAAGTTAAACATAATGAACAAGAAATGAAGGTATTATGCAGTCTTACCAACTACTTGCAAAGCTACACAAAGACCGACCCTCAAACGGACGTTTTAACTTCAATCGTACAGATTTAAGTTTTCTCAAGCACGTACAAACTATATCTACTCAATTTGGTGCGAGCTGCAGCCATGCATGATTTATATGGGTGGATAATGCCTATTCATGGACTTCCAAAATTGGCAAGTAAGACTTAGAAAGAAGGAATATAAATAGGCTCATACCTCGGTGAAATGGAACTCCCACACATGATCATACAAATCCTCCTTTCTTATTCGCTTCTAAGAAAAATAATATATGAAGAAGTAACGTCAGACAAATCAAACGAAAAAGATTAACGTATATTGTATGTGGAAGTGCTAAGGAGAGAGTTCCAATACTCACACGTTTACCATCCATTACAGACAGTGAGTAAACGACCAACTTCGACAAATCATTTACTTTTGCTAACCGAGGTAAATGTGTTTTGCCTCGCCATAATTCTTCACACTACAAAGAGATGCCAAGAAAGATCATTGATCTGCTGTCATTGATCTGCTGTGAAGTTGTAATTAAATTTGCACATGACTTCATCTCTTCTTATTTAGAATTTACTGTTGTTTACTCGCTAAGAGCATGAAGGAAGAAAATAACGTCATTTTACAAAGGACGAACTCTGAATCATTAACATTTAGTGAAAGGAAACAACAAATACTGAGCAAAACTCATTTCACTTTTATGGAACTGTTGATGACTCCAAGAAAAACAGTATCATAATATTTTTTTTTCTCTTTATTTTCTTCATTAATAGTATCCGGATGCATGCACCTTGACTATGGTGCAGCCAGTCCAACTCGCAAGTATAAGCCACCATGGTAATCCTACCACCATGACTTGAGTAGATGGTCCCACACAAGCAGTGTTATAACTAAGACTGAAACCTAGGATTTCCACATATTTATCCCAAAGCTCAATCTAATTTTCAACCCCTAGAAAGTCTACTTTCCTTTTAGGCTGATTGTTGGCGAGGCGGTGGTTCAAACTCCCAATATCGTGATGGTTCATAACCATTAATCTTCTAAGCTTTCAGAAGTAGATGGACTCACATCAAGTGTTTTAGTAGAGATTGAAGCCTGGGATGTCCACGTTGGTTCAACCAATTTTTCAAATCCCAAAAGAAGTTATCTTTTGGGCTGGTTATTGATGAGAAGGGGCCCAAACTTCCAACACCGTGGTTCATAGACACTAAGCTTCTAAGCTTTCAGAAGGCCATATTCCACAATCGAAATTTCTTATGGAGTCGTCGAGTGTGTTGGCATAGTTCTCCTCATACATGACTTCCATAGTTTTCCTTGAAACACTAACTGGTTACTACTAATTCTACCACTTAATCTGCAGTTTGTTTGCAAGTCATTTCCTTTTCTAGCTCCGCTTTTTAGCTTTAAGTCTAAGACACTATACCTATATTGGGCGGTCATTGGTCTTCCTGGAATAACCTTACAGCTTGAAATGAACTTCTATCACATGTTTATTTGACTATGGTTACCTCCAGTTTCATAAGTTACTCGGTGATAATTTCCCTTTCTTAAAATATGTAATAGCTACCACCAAATCATAGGCTGCAGATTTTTTCTTTCCAACTCTTCAAAATCCAAAACTACTTTCTGACCACTAATATGATTCAATTAACACTAGCTACCACCACATCATATAAATAACTCACAAGTAGAAAGAGAATATGTAAGGTCTTATTTGCTTGTTTGCGACGGGTAAAGGATGAAAATTCCTTTTGAGGGGGGTGATATTTAAAGATAACATAGCATAGTTTTAGCAAAGAGCACACAATGTGTATACTTGTAAGGGCTAAACTCCAGATCAAATGGGCAAGAAGATACACAAAGACAATGTGTTTTTTACATAATTTGTAGTCTCTAAGGGAAGACGTTAAAATAGAAGAAGATCCAATGTTCTTAGGAAAAGAAGATCCAATTTTAAGAATAGTCCCTGAAGAATTTATGTTCCAATACCTGGTAAAGCAATTAAGAGCAAGAAACATAAAGAGACAATTCATCTTCAACAATTTATCATCTTCCCAACAAACCAACTAGAAATGTTCAGAGAGGACCTGCAGCTGCAAGTGAAAATTGACCCAACAATAATGTAAAACTTGCAACAACAACAACATACCCCGTGTAATCCCACTTGGGTCCAGGGGGTGTAAAGTATATGCAGACGTTACCCCTATCTTTATGAGGTAGAGAGGTTATTTCCAATAAGACATTTCAAATCAGGTTAAAAAAATAGCAGAGGTGAAGAAACTATATCAAAATATTACAAAAAGCAAGAAAAAGCATTTTGAAAAAAAAAGGAACAGTAACTAAACAAACAATACAATAATCAAGTACATGAAACTACAGGAGTATTAGCACAGCAGGTAAGTGCCAAGAAATTTCATACTAGCTATTTCCACTACTGTCACCCCTAAGTATTTGCATTATTTGTGAGAGTTCGGTCATTTGAAGAAAAGACATTGGATTATACAAAGTGTTCCTAAAGCTATAATTTGACACAATCTGGTTGGCGGCATTTTTGAATTCAAAACATTAAGATTATTTGGATCATTGTTCCAATGTATCCCAACCTTTTAGCAAGTTCCAATTTAGAAGGCTGAAATAGTTAGGCTTTCATTAAGGTATACATAAGTACACATAGGAGTTTCTTGCAATACATAGAGGTTAGCATCGAATCACATGAAACTTTACTAGTATGGAAGGATTAGCAAGATAACACGCCACTTCTTACTAATAATCTACCCTAATCCATATTCTCCACAACCTCCTATCTAAGGTCATATCCTACGTCAGCATAACTATACCTCTATAGCCCACCTCCACACTAAGGCATCCGTCTACTCCTAAACTTACAACATAGTAAATGTTCTTGCTTTGATATACCAATTTTGATAAATAAGTAGTAAAAAAGCATTACAATTTGCGACTGAGGAGCGATTTCGGGGATAAAACCATATAACAAAAAAAACACAATTGTAGTAACAAAGTTTTGACATGAAATGAACCTTAATTTACCAAAATTGAATTTTGACAACTCAACTAAATGAAAGTTCAAACCTTGGAGCTCCAAATCTTATCAGAAGAAGCAACAGCCCTCCATCCACGAGATACAAGGAGACACAGTGCCACGCTGCGTGCGTCTAGACAGCTCAAAATCATCAACATAACATCTGTCCCAAGAACAACTAATGGATCACTCAACCAACCCATTTCACAAATTCTCCTTTTCTTCTTCCCTTTTTCTGCAAACCGATCTTCCAAGATTCCACCTTTATCATCTTCAACCCCAAAACAGGGCAACCCAGAAACCCCATCTTCACTACTCATGGTGGTCTTCTTTATATGACCAAACTCGCAGGTTCTGGTTTCTGTCATTGGAGGTGATTAGTAAAAGGGTGTCCAGAAAATCAAGAATCTTGAGCTGATTACTTCGCAAATAAGTCTTTTGGATTTTATAAGGCTGAGGCGGTGGCCGGCGGGGTTTGGGTTTTACCGGGGAGGGAGTTAGTTGTAATAAAACAACGTCAATACGCGTACGAAATTATTTTTGTTAGAAAATATTTTATTTTTTTTATTTGAATTTACTAAAACTTTATATATAGACATCAAAAATCAAAGATAAAATAAAAAATAAAAATA</genome_strand>
        <mrna_strand>GAAT-TGCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATNGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211134" ref_strand="+" ref_description="SGN-E211134 [cLEC-69-N20]">
      <seq>tggacacccttttactaatcacctccaatgacagaaaccagaacctgcgagtttggtcatataaagaagaccaccatgagtagtgaagatggggtttctgggttgccctgttttggggttgaagatgataaaggtggaatcttggaagatcggtttgcagaaaaagggaagaagaaaaggagaatttgtgaaatgggttggttgagtgatccattagttgttcttgggacagatgttatgttgatgattttgagctgtctagacgcacgcagcgtggcactgtgtctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="39215" stop="40104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39515" g_stop="39804" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E211134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39515" e_stop="39804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACACCCTTTTACTAATCACCTCCAATGACAGAAACCAGAACCTGCGAGTTTGGTCATATAAAGAAGACCACCATGAGTAGTGAAGATGGGGTTTCTGGGTTGCCCTGTTTTGGGGTTGAAGATGATAAAGGTGGAATCTTGGAAGATCGGTTTGCAGAAAAAGGGAAGAAGAAAAGGAGAATTTGTGAAATGGGTTGGTTGAGTGATCCATTAGTTGTTCTTGGGACAGATGTTATGTTGATGATTTTGAGCTGTCTAGACGCACGCAGCGTGGCACTGTGTCTCCT</genome_strand>
        <mrna_strand>TGGACACCCTTTTACTAATCACCTCCAATGACAGAAACCAGAACCTGCGAGTTTGGTCATATAAAGAAGACCACCATGAGTAGTGAAGATGGGGTTTCTGGGTTGCCCTGTTTTGGGGTTGAAGATGATAAAGGTGGAATCTTGGAAGATCGGTTTGCAGAAAAAGGGAAGAAGAAAAGGAGAATTTGTGAAATGGGTTGGTTGAGTGATCCATTAGTTGTTCTTGGGACAGATGTTATGTTGATGATTTTGAGCTGTCTAGACGCACGCAGCGTGGCACTGTGTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551141" ref_strand="+" ref_description="SGN-E551141 [TUS-55-H20]">
      <seq>gcattatccacccatataaatcatgcatggctgcagctcgcaccaaattgagtagatatagtttgtacgtgcttgagaaaacttaaatctgtacgattgaagttaaaacgtccgtttgagggtcggtctttgtgtagctttgcaagtagttggtaagactgcataataccttcatttcttgttcattatgtttaactttttgttcttcactggtcagtttcatagagcttttgccaaaattgaaaacggtttgcatggttctgtatcctgtaagtgctatttgaaccacttctgctgctgcctttgattgctatttcttcacagtttaatgcatctggattcaataaagctttgattggaaactagaggaaggaagagaagttttttggtttgacaagagagtgaaaaaaacgaagtgaagcagatttccctctttcctttcgctagtttccgtcataggataacaaagataaaacataatccttgtataactacaacctatactacttgtgtggacgaatccttaggcggctcctgagtactggcgaatgctcgatccctacaggaatggaactggacgtcccctgcgccgttattttcttccagatggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="42508" stop="43721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42808" g_stop="43421" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E551141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42808" e_stop="43421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGT</genome_strand>
        <mrna_strand>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688953" ref_strand="+" ref_description="SGN-E688953 [t3_tus_55_H20]">
      <seq>gcattatccacccatataaatcatgcatggctgcagctcgcaccaaattgagtagatatagtttgtacgtgcttgagaaaacttaaatctgtacgattgaagttaaaacgtccgtttgagggtcggtctttgtgtagctttgcaagtagttggtaagactgcataataccttcatttcttgttcattatgtttaactttttgttcttcactggtcagtttcatagagcttttgccaaaattgaaaacggtttgcatggttctgtatcctgtaagtgctatttgaaccacttctgctgctgcctttgattgctatttcttcacagtttaatgcatctggattcaataaagctttgattggaaactagaggaaggaagagaagttttttggtttgacaagagagtgaaaaaaacgaagtgaagcagatttccctctttcctttcgctagtttccgtcataggataacaaagataaaacataatccttgtataactacaacctatactacttgtgtggacgaatccttaggcggctcctgagtactggcgaatgctcgatccctacaggaatggaactggacgtcccctgcgccgttattttcttccagatggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="42508" stop="43721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42808" g_stop="43421" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E688953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42808" e_stop="43421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGT</genome_strand>
        <mrna_strand>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262847" ref_strand="+" ref_description="SGN-E262847 [cLEG-59-M21]">
      <seq>cattatccacccatataaatcatgcatggctgcagctcgcaccaaattgagtagatatagtttgtacgtgcttgagaaaacttaaatctgtacgattgaagttaaaacgtccgtttgagggtcggtctttgtgtagctttgcaagtagttggtaagactgcataataccttcatttcttgttcattatgtttaactttttgttcttcactggtcagtttcatagagcttttgccaaaattgaaaacggtttgcatggttctgtatcctgtaagtgctatttgaaccacttctgctgctgcctttgattgctatttcttcacagtttaatgcatctggattcaataaagctttgattggaaactagaggaaggaagagaagttttttggtttgacaagagagtgaaaaaaacgaagtgaagcagatttccctctttcctttcgctagtttccgtcataggataacaaagataaaacataatccttgtataactacaacctatactacttgtgtggacgaatccttaggcggctcctgagtactggcgaatgctcgatccctacaggaatggaactggacgtcccctgcgccgttattttcttccagatggaagtcagactgcagaaccagatgacagaatatatggggtggtcatgaatcttgctactccatagtaactagcttgcttgcagatggaaatataagagaagactacgtgaggataaaccgttggccgcctatgtatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="42509" stop="43855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42809" g_stop="43555" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E262847" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42809" e_stop="43555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGAC--AAGATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAACACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGAC</genome_strand>
        <mrna_strand>CATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGACAGAATATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAAGACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289428" ref_strand="+" ref_description="SGN-E289428 [cLET-3-F17]">
      <seq>ggaactggacgttccctgcgccgttattttcttccagatggaagtcagactgcagaaccagatgacaagatatggggtggtcatgaatcttgctactccatagtaactagcttgcttgcagatggaaatataagagaacactacgtgaggataaaccgttggccgcctatgtatgtgacaaggaaggaagattggagctgggagatctctaacaacttttgtacctacaagagcataccagatgctgataaaaaagatggcactggacctttgtttctacttcactaggcctctacagtagtttctactttgaagccaaactatggagatgtttgtttgaataattgtaaggccttttgtaaagtatattttgttgatattaataagttttgcaagttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="43077" stop="44078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43377" g_stop="43777" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="414"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E289428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43377" e_stop="43777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGACAAGATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAACACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGACAAGGAAGGAAGATTGGAGCTGGGAGATCTCTAACAACTTTTGTACCTACAAGAGCATACCAGATGCTGATAAAAAAGATGGCACTGGACCTTTGTTTCTACTTCACTAGGCCTCTACAGTAGTTTCTACTTTGAAGCCAAACTATGGAGATGTTTGTTTGAATAATTGTAAGGCCTTTTGTAAAGTATATTTTGTTGATATTAATAAGTTTTGCAAGTTTTA</genome_strand>
        <mrna_strand>GGAACTGGACGTTCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGACAAGATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAACACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGACAAGGAAGGAAGATTGGAGCTGGGAGATCTCTAACAACTTTTGTACCTACAAGAGCATACCAGATGCTGATAAAAAAGATGGCACTGGACCTTTGTTTCTACTTCACTAGGCCTCTACAGTAGTTTCTACTTTGAAGCCAAACTATGGAGATGTTTGTTTGAATAATTGTAAGGCCTTTTGTAAAGTATATTTTGTTGATATTAATAAGTTTTGCAAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353623" ref_strand="+" ref_description="SGN-E353623 [cTOS-10-K13]">
      <seq>caagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagttgattcagatcgttttttaatgaataggcgtccttcatcatccatcttctcaatgtgttttcatccaattacaatatggaagtggcttttccagttgcctcaaaacactagagaagccaaatctagcagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48437" stop="43757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48137" g_stop="48109" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="101" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44053" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="590" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E353623" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48137" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAAATTAT</genome_strand>
        <mrna_strand>CAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354634" ref_strand="+" ref_description="SGN-E354634 [cTOS-17-D12]">
      <seq>caagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagttgattcagatcgttttttaatgaataggcgtccttcatcatccatcttctcaatgtgttttcatccaattacaatatggaagtggcttttccagttgcctcaaaacactagagaagccaaatctagcagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48437" stop="43757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48137" g_stop="48109" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="101" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44055" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="588" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E354634" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48137" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAAATT</genome_strand>
        <mrna_strand>CAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357115" ref_strand="+" ref_description="SGN-E357115 [cTOS-22-D10]">
      <seq>caagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagttgattcagatcgttttttaatgaataggcgtccttcatcatccatcttctcaatgtgttttcatccaattacaatatggaagtggcttttccagttgcctcaaacactagagaagccaaatctagcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48437" stop="43758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48137" g_stop="48109" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="101" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44058" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="584" r_length="483" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E357115" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48137" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAA</genome_strand>
        <mrna_strand>CAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTC-AAACACTAGAGAAGCCAAATCTAGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717242" ref_strand="+" ref_description="SGN-E717242 [FB19CC09]">
      <seq>atcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagttgattcagatcgttttttaatgaataggcgtccttcatcatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48640" stop="35262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48340" g_stop="48109" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="304" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44131" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="715" r_length="411" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E717242" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48340" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGT</genome_strand>
        <mrna_strand>ATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351162" ref_strand="+" ref_description="SGN-E351162 [cTOS-6-E17]">
      <seq>acagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacnatgcaacttcatgtttctcttatagttgattcagatcgtttttttatgaatangcgtccttcatcatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48651" stop="43845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48351" g_stop="48109" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="315" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44137" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="720" r_length="405" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E351162" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48351" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCA</genome_strand>
        <mrna_strand>ACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACNATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTTATGAATANGCGTCCTTCATCATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326574" ref_strand="+" ref_description="SGN-E326574 [cTOC-17-H8]">
      <seq>gccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagntgattcagatcgttttttaatgaatanngcgtcttcatcatccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48699" stop="43863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48399" g_stop="48109" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="363" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44142" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="763" r_length="400" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E326574" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48399" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATA-GGCGTCCTTCATCATCCATCT</genome_strand>
        <mrna_strand>GCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGNTGATTCAGATCGTTTTTTAATGAATANNGCGT-CTTCATCATCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327556" ref_strand="+" ref_description="SGN-E327556 [cTOC-20-O23]">
      <seq>gccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatnagttgattcagatcgttttttaatgaatangcgtccttcatcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48699" stop="43846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48399" g_stop="48109" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="363" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44146" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="760" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E327556" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48399" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTAT-AGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCC</genome_strand>
        <mrna_strand>GCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATNAGTTGATTCAGATCGTTTTTTAATGAATANGCGTCCTTCATCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344411" ref_strand="+" ref_description="SGN-E344411 [cTOF-14-K11]">
      <seq>ccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagttgattcagatcgttttttaatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48438" stop="43863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48138" g_stop="48109" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="102" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44166" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="478" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="490"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E344411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48138" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGA</genome_strand>
        <mrna_strand>CCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372488" ref_strand="+" ref_description="SGN-E372488 [TUS-32-G4](-)">
      <seq>gcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactttgggaaatggatgcctccagcaactggagagcttcgtcctgatgtttggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48677" stop="35256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48377" g_stop="48109" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="341" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44202" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="681" r_length="340" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E372488" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48377" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATG</genome_strand>
        <mrna_strand>GCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTTTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTTTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372489" ref_strand="+" ref_description="SGN-E372489 [TUS-32-G4]">
      <seq>cagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtntaagatgattgctttaacgctattagcattacgagttgggatcataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48676" stop="35256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48376" g_stop="48109" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="340" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44202" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="680" r_length="340" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E372489" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48376" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATG</genome_strand>
        <mrna_strand>CAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTNTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326615" ref_strand="+" ref_description="SGN-E326615 [cTOC-17-I11]">
      <seq>gccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48699" stop="43954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48399" g_stop="48109" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="363" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44254" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="650" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E326615" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48399" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTT</genome_strand>
        <mrna_strand>GCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAAT-AAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570859" ref_strand="+" ref_description="SGN-E570859 [15510]">
      <seq>ctccattgttcctttcaatctccatcactgtaaccctcaaaagcagctcaaaatcagagtgttccatcacagagggaaaatcacactggtaggaaaaatgacagaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagacggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggagttttctcttggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatcttgcccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgccaccagcaactggagagcttcgtcctgatgtctggtaagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagttgtgttcatactttcctttggatttctttcctcattggaataaaattgtatctgcaaaaatctgttgcaacatgtttaagatgatgttacaggattgctttaacactattagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48710" stop="43947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48419" g_stop="48109" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="384" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44261" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="665" r_length="281" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E570859" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48419" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACT-GTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGC-AAAATCTG-TGCAACATGTTTAAGATG</genome_strand>
        <mrna_strand>CTCCATTGTTCCTTTCAATCTCCATCACTGTAACCCTCAAAAGCAGCTCAAAATCAGAGTGTTCCATCACAGAGGGAAAATCACACTGGTAGGAAAAATGACAGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGACGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGAGTTTTCTCTTGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATCTTGCCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCACCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGT-A-AGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTTGTGTTCATACTTTCCTTTGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAAATCTGTTGCAACATGTTTAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557531" ref_strand="+" ref_description="SGN-E557531 [16345]">
      <seq>ctccatcactgtaaccctcaaaagcagctcaaaatcagagtgttccatcacagagggaaaatcacactgtaggaaaaatgacagaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagacggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggagttttctcttggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatcttgcccatgcttcaagctgaagaagatgaaagatttgttatagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgccaccagcaactggagagcttcgtcctgatgtctggtaagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttccttttggatttctttcctcattggaataaaattgtatctgcaaatctgtgcaacatgtttaagatgatgtacagatttgcttacgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48700" stop="43956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48400" g_stop="48109" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="364" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44261" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="643" r_length="279" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E557531" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48400" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTT-CTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATG</genome_strand>
        <mrna_strand>CTCCATCACTGTAACCCTCAAAAGCAGCTCAAAATCAGAGTGTTCCATCACAGAGGGAAAATCACACTGTAGGAAAAATGACAGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGACGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGAGTTTTCTCTTGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATCTTGCCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTATAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCACCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGT-A-AGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCCTTTTGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGC-AAATCTGTGCAACATGTTTAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310700" ref_strand="+" ref_description="SGN-E310700 [cLEZ-15-I11]">
      <seq>tgtaaagcagctcaaaattacagtgttctggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48683" stop="44020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48383" g_stop="48109" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="347" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44320" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="569" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E310700" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48383" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGA</genome_strand>
        <mrna_strand>TGTAAAGCAGCTCAAAATTACAGTGTTCTGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288957" ref_strand="+" ref_description="SGN-E288957 [cLES-17-M2]">
      <seq>gttccgcaccaaagggaaattcacattgtaggaaaaatgacggaggcaatgttaaggaaaaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggcgtattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtatgaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaacaagaggcgagaatcatgaaagatgttcccggatggaaagttggtgaaagagtgtacaactctgggaaatggatgcctccagcaactggagagcttcttactgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48659" stop="44022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48359" g_stop="48109" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="324" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44322" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="544" r_length="220" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E288957" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48359" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGC-TATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCG</genome_strand>
        <mrna_strand>GTTCCGCACCAAAGGGAAATTCACATTGTAGGAAAAATGACGGAGGCAATGTTAAGGAAAAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCGTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTATGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAACAAGAGGCGAGAATCATGAAAGATGTTCCCGGATGGAAAGTTGGTGAAAGAGTGTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCTTACTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308803" ref_strand="+" ref_description="SGN-E308803 [cLEZ-14-P15]">
      <seq>tcgccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48701" stop="44028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48401" g_stop="48109" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="365" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44328" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="579" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E308803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48401" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTT</genome_strand>
        <mrna_strand>TCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292849" ref_strand="+" ref_description="SGN-E292849 [cLET-11-I14]">
      <seq>cagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48676" stop="44054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48376" g_stop="48109" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="340" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44354" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="528" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E292849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48376" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTG</genome_strand>
        <mrna_strand>CAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293495" ref_strand="-" ref_description="SGN-E293495 [cLET-15-P7](-)">
      <seq>gaatcgccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtatgaaaaatgacggaggcaatgattaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtatgaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccgcgtggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcttcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48704" stop="44105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48404" g_stop="48109" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="368" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44405" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="505" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E293495" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48404" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATG</genome_strand>
        <mrna_strand>GAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTATGAAAAATGACGGAGGCAATGATTAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTATGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGCGTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCTTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293494" ref_strand="+" ref_description="SGN-E293494 [cLET-15-P7]">
      <seq>gaatcgccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtatgaaaaatgacggaggcaatgattaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtatgaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccgcgtggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcttcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48704" stop="44105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48404" g_stop="48109" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="368" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44405" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="505" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E293494" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48404" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATG</genome_strand>
        <mrna_strand>GAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTATGAAAAATGACGGAGGCAATGATTAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTATGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGCGTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCTTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711279" ref_strand="+" ref_description="SGN-E711279 [FB01CB03]">
      <seq>cccttaagtagccctgtaaagcagctcaaaattacagtgttcccgcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagtggtgataaaggaacaacaatatgctgcccgaagggctatattacccatgcttcatgctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaacaagaggcgagaatcatgaaggatgttcccggttggacagttggtgaaagagtttacaactctgggaaatggatgcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48690" stop="44131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48398" g_stop="48109" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="360" r_length="73" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44431" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="471" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E711279" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48398" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAG-GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCC</genome_strand>
        <mrna_strand>CCCTTAA-GTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCCGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTT-G-GTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGATAAAGGAACAACAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCATGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAACAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGACAGTTGGTGAAAGAGTTTACAACTCTGGGAAATGGATGCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200536" ref_strand="+" ref_description="SGN-E200536 [cLEB-8-P13]">
      <seq>gcacgagcttctccattgaatcgccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgtttaagagtggaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48714" stop="44345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48422" g_stop="48109" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="385" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44520" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="407" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E200536" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48422" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTTTCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAG</genome_strand>
        <mrna_strand>GCA-CGAGCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTTAAGAGTGGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252273" ref_strand="+" ref_description="SGN-E252273 [cLEG-12-B9]">
      <seq>tttttctcagctgcaaaactttttcttgtaaaattatgtatcgttttgcagcaaaacttgcttctaaatccagggttgccagaagcagcacccaacaggttggtagtaggttgaattggagcagaaactatgctgctaaggatattaaatttggagttgaagctaggggaattatgcttcaaggagttgagcagcttgctgatgcagtcaaagtcactatgggtccaaagggtcgtaatgtggtgattgaacaaagttggggtgcacccaaggtgacaaaagatggtgtcactgttgcaaaaagcattgaattcaaggataaaataaaaaatgttggtgccagccttgtaaagcaagttgccaatgccactaatgatgctgctggcgatggtaccacttgtgcaacagtactcacccgagcaatatttgctgaagggtgcaagtctgtagctgctggtatgaatgcaatggatcttagacgaggtatcacaatggctgtcgatgctgttgtaacaaacctgaaaagcagagcacggatgataagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49605" stop="52175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49605" g_stop="49620" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="35" r_length="16" r_score="0.812"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49621" i_stop="49904" i_length="284">
            <donor d_prob="0.836" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49905" g_stop="49942" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="73" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="98" r_length="25" r_score="0.760"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="230" r_length="132" r_score="0.886"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="390" r_length="160" r_score="0.906"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="0.86"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51718" g_stop="51875" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="548" r_length="158" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E252273" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49605" e_stop="49620"/>
          <exon e_start="49905" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCTAATGTTGCAATTTATGTTTTCTTTTTTCTTCTTTTACTTTTTATTATAAATTACCAACTTTTTATGTGAACTATTTATTTTTATTTTAATTAATTATTATCTTGAATATATGATTACAGTAAACCCTCTTCCATAAAACCCTAAAACCCTAGAAGGTGCTTCTTGGGATCTTCTAGGCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACA</genome_strand>
        <mrna_strand>TTTTTCTTGTAAAATT............................................................................................................................................................................................................................................................................................ATGTATCGTTTTGCAGCAAAACTTGCTTCTAAATCCAG...........................................................................................................GGTTGCCAGAAGCAGCACCCAACAG....................................................................................GTTGGTAGTAGGTTGAATTGGAGCAGAAACTATGCTGCTAAGGATATTAAATTTGGAGTTGAAGCTAGGGGAATTATGCTTCAAGGAGTTGAGCAGCTTGCTGATGCAGTCAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAGGTGACAAAAGATGGTGTCACTGTTGCAAAAAGCATTGAATTCAAGGATAAAATAAAAAATGTTGGTGCCAGCCTTGTAAAGCAAGTTGCCAATGCCACTAATGATGCTGCTGGCGATG..............................................................................................................................GTACCACTTGTGCAACAGTACTCACCCGAGCAATATTTGCTGAAGGGTGCAAGTCTGTAGCTGCTGGTATGAATGCAATGGATCTTAGACGAGGTATCACAATGGCTGTCGATGCTGTTGTAACAAACCTGAAAAGCAGAGCACGGATGATAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746136" ref_strand="+" ref_description="SGN-E746136 [GI|47104918]">
      <seq>ggggatcttctaggcccttcttcactaaattaaatacctttgaagcttcttcttcatccccacttctctctttgtacttcaaaatccctttccactttcactttcagcagcatttctcagcttcaaaatgtatcgttttgcagcaaatcttgcttctaaagccagtgttgcaagaaccagttcccaaaagattggtgggaggttgaattggagtagaaactatgctgcaaaggatatcagatttggagttgaagctagagctttgatgcttcaaggtgttgagcagcttgctgatgctgttaaagtcactatgggtccaaaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtgacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaagatacaaaatgttggtgctagccttgtaaaacaagtcgccaatgcaacaaatgatgttgctggtgatggtaccacttgtgcaacagttctcacccgagcaatatttgctgaaggatgcaagtcagtggcagctggtatgaatgcaatggaccttagacggggtattaccatggctgtagattctgttgtgacaaacctgaaaagcagagcacggatgatcagtacatctgaggaaattgcacaggttgggactatctctgcaaacggagaaagagtaattggcgacctcattgcaagggcaatggagaaagtaggcaaggagggagtcatcactattcaggacgggaagacattgctcaatgagttggatgttgttgaagggatgaagttggatagaggttacatatcaccatacttcatcacaaatcagaagaatcagaaatgtgaactggataacccactaattctgattcatgagaaaaagatctcaagcattaatgctgttgtgaaagcattggagttagctctgaagagacaaaggcccctcttaattgtggctgaagatgtggacaatgaagcactcgccactcttattttgaacaaactccgtgctggaatcaaggtttgtgccatcaaagcaccaggctttggtgaaaacaggaaagcttatttgcaagatcttgctattttaactggaggccaagtcataacagaagagcttggactgaacattgaaaatttggagttcgagatgctgggaacaagtaaagaggcaactatctctaaggatgatactgtcattcttgatggtgctggtgagaagaagtccatcgaggaacgatgcgaactgattagatcaaccattgaacagagcacatctgactatgacaaggagaagttgcaggaaagactagctaagctttcagggggtgttgctgtgttaaagattggaggagccagtgaagctgaggttggtgaaaagaaagatagagtaactgatgctttgaacgccacaaaggctgcagtggaggaaggaattgttccaggtggtggtgttgctcttctttatgcagcaagagaattggataatttgacaacagccaactttgaccagaagattggtgtacaaattattcagaatgctctgaagacgccagtacatacaatagcctctaacgcaggagtagagggtgctgtcgtggttggcaaattgttggatcaggacaaccttgatcttggatatgatgcggccaagggtgaatatgtagatatgataaaggcaggaatcatcgatccagtgaaagtgatcaggacagctttggtcgatgctgccagtgtctcgtctcttttgaccacaactgaagcagttgttgtcgagcttcctaaggacgagaaggaatctcctgcaatgggtggcggtatgggtggtggtatgggtggcatggacttctgattgaaaagccaaaaacagtaattgcagctgcttgacacatttggtttatagaacaaagcaaaaaaataaatttagatttatttcctattttgatgaatctttttacgatagaaaacgcgcctattgtatcaatagcaagagagacaagaccattgtgaattcatgtttttgtaggttcaaaatttgtagtcttcatttgaatacgcagcttaaatataggtccatttcagtgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49479" stop="69731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49778" g_stop="49942" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="190" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="322" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="482" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51893" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="658" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52235" g_stop="52330" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="754" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52704" g_stop="52808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="859" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52931" g_stop="53017" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="946" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53018" i_stop="53110" i_length="93">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53111" g_stop="53200" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1036" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53289" g_stop="53369" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1037" r_stop="1117" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="53460" g_stop="53528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1118" r_stop="1186" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="53724" g_stop="53801" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1187" r_stop="1264" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="53893" g_stop="53988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1265" r_stop="1360" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="54128" g_stop="54227" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1361" r_stop="1460" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="54308" g_stop="54411" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1461" r_stop="1564" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="54530" g_stop="54714" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1565" r_stop="1749" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.632" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="54819" g_stop="55168" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1750" r_stop="2099" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="55169" i_stop="56306" i_length="1138">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="56307" g_stop="56322" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="2100" r_stop="2115" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E746136" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2115</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49778" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51893"/>
          <exon e_start="52235" e_stop="52330"/>
          <exon e_start="52704" e_stop="52808"/>
          <exon e_start="52931" e_stop="53017"/>
          <exon e_start="53111" e_stop="53200"/>
          <exon e_start="53289" e_stop="53369"/>
          <exon e_start="53460" e_stop="53528"/>
          <exon e_start="53724" e_stop="53801"/>
          <exon e_start="53893" e_stop="53988"/>
          <exon e_start="54128" e_stop="54227"/>
          <exon e_start="54308" e_stop="54411"/>
          <exon e_start="54530" e_stop="54714"/>
          <exon e_start="54819" e_stop="55168"/>
          <exon e_start="56307" e_stop="56322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCTTCTAGGCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAGGTATCTTTGCAAGTTTTTGAACTTGCACATTAAAAATACTGCTTTTCTGGTACATACAATTCTCTATCTTTTGCAGGCAACCTCCTCCCTCCCTAGAAGCCTCTAAGCCTGACCCCTCCCAACCTAACGCCAAAAAAAAAAAGAGAAAGAAAAGAAAATAAACAGTGAAAAGGAACTCATAGGGAAGCAGTACTACTAGTAGAAGGAGAAAAAGGCAGAAGTAAAAGATTTCCCGTGAAAGTAGATTTAATAATGCACTGAAGAGTTCTGTGTAACTTCTTCTTTGCTTAAGTGATACTCTTCTTCTTCCCATAAGATTTTGATATTGTAACTATTGATAGGTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAAGTAAGTAATCGTATTGTCTATCTATTTATGCATTCTCTGTATGCATCTTTTGGTCACTGTGGTCCTTACTTATCTCTGTGAGCTTCAAAATGAAGCTTCTGATTTCAATATGCTCTTGGGATGTGGGTGGAGCTGGAGTAGAAGATATATTTGCCGAGTTTAACTAATTGATACCTGATGAATATTAGTGTTATATGGGAGAATTTGGGCTAGAAATCAAGCATATAGGATTTTGATAAGTTATTTGTTGCCCAGTTATGAGAAACATCTTTTCATAGTCCAATTTGTATCTATTTGTTATACACTTCGGCTAATTTGTGGGAGACTTGTTACTTTAATGATGTGTAGCTAACTCATTTCTACTATCACACAGGACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGTGTATGTTTTTGGCTTGCTAATCTTAGTTAAGCTCACATGAGTTTGCTCGCTGTGCCAACATTCTTTACATATTTTGCACCATTCTCTTGTTTAAAATTCACTATTCTCCTGATGTCTGGCAGGAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAGGTGATCCTCTTACTGAGATTATCAGTTTGGTGTCTATGAGATTGATCATGTTGCTGTCTATCTTACTCTTGCAGTCTTATTTCATCTATGCAGAGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAGGTATACTGATGAGTGATCGGTATTTCCTGTTCTGTGGTTCGACTTTTCCTCAGTCTGGTGATTATGTATTGTCTGTAAATGTCTACAGGTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAAGTGAGAACTGTTGAACTGTGCTAATGTATGAGATAGTTGATATTTGTCTTAATGATACCTAACCAACGTGTATTACTGCTTGTTTGGTAGGTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAGGTATTTTTGCTGCGTGATTTGGCTGTAGTTGTTTCTTTTACTATGTATGTTTTCTTTTGAATATATATAAGTGCATGAAAAATTGTGCATAATGTGATACATGTTTGGTATTTCTAGTGAGTTATACGCTGGGTAGGGGGGGTCGACTTTATATATGTGTCTCCTACTGTTTTACTCATGCTTTCCTTTCCCTAGGCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTGGTTCGTTTTGCTTACTTTTTCACCAATATCAGTAAAAGCACTGTACTTCTGCATGAGGTTGAGCATATACTCGTGCTCTTTGTATTTGCAGATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAGGTATGCCTCTGTTAGCAACCTGTGTAAATTAAGTTTCTAAAGAAGAATTCAAACTTTTTTATTAGAGGGAAATAGTTGCAACTGTTAATTCAGACTCGTTATTATAACATGCCATCACAGAATGTGTATTAATTTTCAGATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAGGTTTAATACATGTCCGTGAGTTTGTAGCAAAATGGGAAGATCCAATAGTCCGAGATTATTGATCCTCTTTTGTCTTGCAGGTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAGGTTTGCTATGCTCCCTTCTAACCCTGCTAATTAGCTTCTTAGTAATAAAGTAGTTTCACTCCGAGTACTATCTTGTGTTGTGAATGACTTGTGACTTGGTTGAACTTTGTGTTTGCAGACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAGGTTAGCATATAACCCCCTTCCTATTTTCTTGTTCTTCCATCGTTAAGACTTGAGACATTGGCCTCACATTCTTGCCAACGTAACGCCCCTTGTGTTCTATGCAGTGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGTGTTCCTTTCTGGTTTTACTATTATATTGAGGTGTGATGAATTCATTTATACTTGTTCTACTGTTCTTTTTTCGAAACTTTTTGACTATGGAGATTGAATCTCTCCAAGCAACGTTTTTCAGTAGCAAGCTATGGTTAAACTTTTTCCGCAGTTGAAATCGACAAATGAAACAATTAGACTCAATAGGTGCACCCCTGACCAAAATTTAGGAGCATCAGATTAAGGTGTCCAAATACAAGAGTGGTTGATTATAAATTGGACCCTATTATTGTTGAAGAATTCTGAATATTCCTAATATATTGTATATGAACATTTTTGAACGATAGCTTAAGAAAACTTCTGGCTCGTGGAATTAGGGGTGATAATGGTACGATTTGATCGGTTAATTTTTTCAATTTTAATTTTTTGTTTTATGGTATATAACTTTTTAAAATCATTTCAATCATATCGGTTTCTCTTCGGTATTGGTATGGTTTGATTAGTTTTCCATTATTTTTTACCGTTTATGTATCACCTCAAGATATACTAGTGTTAATGCACTTTAATTCATTACAAAATAAACGAGAATGTAAAACCTTGTTGCCGTAGTATTGTTTGATCTTAAATATTTCATAGAAGTGCTTGGATATGATTTGTTGTATTGTTTGATATAGTATCTATTGCAGTATCTTTTCATTATAAAGCTAATTAAGTAAAAATTAATTAAAGAATAAACACCCAAAATCATTTAGCCACCAGAAGCCTAGGATTTAAGTTATTTTTATATTTGAGAAATGTAATAATATACTTTTTATATATTACTTTTATATAAAAGTCCGCGATTTTATTGAAAAATAGTATAAGTTGGTTTCGATTCAATTTGATCGATTTTTCATATTCTTTTGACACCCCTAATTAGAACGATATGACCAAAGTAAAATTTTAAACAATTTTGAGATCTAATAAAATGTAAGTTACCAATTTTCACATTATTCATATGGGAATATTCTAAGAATTTAAATGTAATTATATTTATTCTTGTTTTCCCAATACATATATATGAAGTATAATTAGAATATTCTCTTTTAGTTACTGCAACTTATTCAATGAATTTCCATATTTGGCTTTTAATGATATTTTATGTAAAAATATTTTTACAGTATAAAAACCATCTAA</genome_strand>
        <mrna_strand>GGGGATCTTCTAGGCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG...........................................................................................................TGTTGCAAGAACCAGTTCCCAAAAG....................................................................................ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG.....................................................................................................................................................................................................................................................................................................................................................GTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................GACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT..........................................................................................................................GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAG.............................................................................................AGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAG........................................................................................GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAA..........................................................................................GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG...................................................................................................................................................................................................GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG...........................................................................................ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG...........................................................................................................................................ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG................................................................................GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG......................................................................................................................ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG........................................................................................................TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457039" ref_strand="+" ref_description="SGN-E457039 [cPRO-2-O11]">
      <seq>ctagccccttcctcactaaataaaatacctttgaagcttcttcttcatccccacttctatctttgttcttcaaaaccccttccattttcactttcagcagcatttctcagtttcaaaatgtatcgttttgcagcaaatcttgcttctaaagccagagttgcaagaaccagttcccaacagattggtgggaggttcaattggagtagaaactatgctgcaaaggatatcagatttggtgttgaagctagagctttgatgcttcaaggtgttgagcagcttgctgatgctgttaaagtcactatgggtccaaaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtaacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaagatacaaaatgttggtgctagccttgtaaaacaagtcgccaatgcaacgaatgatgttgctggtgatggtaccacttgtgcaacagtcctcacccgagcaatatttgctgaaggatgcaagtcagtggcagctggtatgaatgcaatggaccttagacggggtattaccatggctgtagattctgttgtgacaaacctgaaaagcagagcacggatgatcagtacatctgaggaaattgcacaggttgggactatctctgcaaacggagaaagagaaattggcgacctaattgcaagggctatggagaaagtaggcaagggaggagtcatcactattcaagatggggaaacgttgctcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49487" stop="52651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49787" g_stop="49942" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="180" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="312" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="472" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51893" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="648" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52235" g_stop="52330" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="744" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E457039" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49787" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51893"/>
          <exon e_start="52235" e_stop="52330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAGGTATCTTTGCAAGTTTTTGAACTTGCACATTAAAAATACTGCTTTTCTGGTACATACAATTCTCTATCTTTTGCAGGCAACCTCCTCCCTCCCTAGAAGCCTCTAAGCCTGACCCCTCCCAACCTAACGCCAAAAAAAAAAAGAGAAAGAAAAGAAAATAAACAGTGAAAAGGAACTCATAGGGAAGCAGTACTACTAGTAGAAGGAGAAAAAGGCAGAAGTAAAAGATTTCCCGTGAAAGTAGATTTAATAATGCACTGAAGAGTTCTGTGTAACTTCTTCTTTGCTTAAGTGATACTCTTCTTCTTCCCATAAGATTTTGATATTGTAACTATTGATAGGTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA</genome_strand>
        <mrna_strand>CTAGCCCCTTCCTCACTAAATAAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTATCTTTGTTCTTCAAAA-CCCCTTCCATTTTCACTTTCAGCAGCATTTCTCAGTTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG...........................................................................................................AGTTGCAAGAACCAGTTCCCAACAG....................................................................................ATTGGTGGGAGGTTCAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGTGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTAACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACGAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTCCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG.....................................................................................................................................................................................................................................................................................................................................................GTTGGGACTATCTCTGCAAACGGAGAAAGAGAAATTGGCGACCTAATTGCAAGGGCTATGGAGAAAGTAGGCAAGGGAGGAGTCATCACTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297105" ref_strand="+" ref_description="SGN-E297105 [cLEW-2-I21]">
      <seq>gcccttctttactaaattaaatacctttgaagcttcttcttcatccccacttctctctttgtgcttcaaaatccctttccactttcactttcagcagcatttctcagcttcaaaatgtatcgttttgcagcaaatcttgcttctaaagccagtgttgcaagaaccagttcccaaaagattggtgggaggttgaattggagtagaaactatgctgcaaaggatatcatatttggagttgaagctagagctttgatgcttcaaggcgttgagcagcttgctgatgctgttaaagtcactatgggtccaaaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtgacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaagatacaaaatgttggtgctagccttgtaaaacaagtcgccaatgcaacaaatgatgttgctggtgatggtaccacttgtgcaacagttctcacccgagcaatatttgctgaaggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49491" stop="52067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49791" g_stop="49942" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="177" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="309" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="469" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51767" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="519" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E297105" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49791" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGC</genome_strand>
        <mrna_strand>GCCCTTCTTTACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTGCTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG...........................................................................................................TGTTGCAAGAACCAGTTCCCAAAAG....................................................................................ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCATATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGCGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312817" ref_strand="+" ref_description="SGN-E312817 [cTOA-8-G11]">
      <seq>ttgaagcttcttcttcatccccacttctctctttgtacttcaaaatccctttccactttcactttcagcagcatttctcagcttcaaaatgtatcgttttgcagcaaatcttgcttctaaagccagtgttgcaagaaccagttcccaaaagattggtgggaggttgaattggagtagaaactatgctgcaaaggatatcagatttggagttgaagctagagctttgatgcttcaaggtgttgagcagcttgctgatgctgttaaagtcactatgggtccaaaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtgacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaagatacaaaatgttggtgctagccttgtaaaacaagtcgccaatgcaacaaatgatgttgctggtgatggtaccacttgtgcaacagttctcacccgagcaatatttgctgaaggatgcaagtcagtggcagctggtatgaatgcaatggaccttagacggggtattaccatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49517" stop="52124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49817" g_stop="49942" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="151" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="283" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="443" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51824" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="550" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E312817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49817" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCT</genome_strand>
        <mrna_strand>TTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG...........................................................................................................TGTTGCAAGAACCAGTTCCCAAAAG....................................................................................ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304938" ref_strand="+" ref_description="SGN-E304938 [cLEX-10-H23]">
      <seq>ttcaaaatccctttccactttcactttcacacatttctcacttcaaaatgtatcgtttgcacaaatcttgctttaaagccagtgttgcaagaaccagttcccaaaagattggtgggaggttgaattggagtaaaactatgctgcaaggatatcagatttggagttgaagctgagctttgatgcttaaggtgttgagcagcttgctgatgctgtaaagtcactatgggtccaaaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtgacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaagatacaaaatgttggtgctagccttgtaaaacaagtcgccaatgcaacaaatgatgttgctggtgatggtaccacttgtgcaacagttctcacccgagcaatatttgctgaaggatgcaagtcagtggcagctggtatgaatgcaatggaccttagacggggtattaccatggctgtagattctgttgtgacaaacctgaaaagcagagcacggatgatcagtacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49555" stop="52177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49855" g_stop="49942" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="107" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="234" r_length="127" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="394" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51877" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="554" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E304938" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49855" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATC</genome_strand>
        <mrna_strand>TTCAAAATCCCTTTCCACTTTCACTTTCA-CA-CATTTCTCA-CTTCAAAATGTATCG-TTTGCA-CAAATCTTGCTT-TAAAGCCAG...........................................................................................................TGTTGCAAGAACCAGTTCCCAAAAG....................................................................................ATTGGTGGGAGGTTGAATTGGAGTA-AAACTATGCTGC-AAGGATATCAGATTTGGAGTTGAAGCT-GAGCTTTGATGCTT-AAGGTGTTGAGCAGCTTGCTGATGCTG-TAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708072" ref_strand="+" ref_description="SGN-E708072 [FA34DB05]">
      <seq>ccattttcactttcagcagcatttctcagcttcaaaatgtatcgttttgcagcaaatcttgcttctaaagccagtgttgcaagaaccagttcccaaaagattggtgggaggttgaattggagtagaaactatgctgcaaaggatatcagatttggagttgaagctagagctttgatgcttcaaggtgttgagcagcttgctgatgctgttaaagtcactatgggtccaaaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtgacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaagatacaaaatgttggtgctagccttgtaaaacaagtcgccaatgcaacaaatgatgttgctggtgatggtaccacttgtgcaacagttctcacccgagcaatatttgctgaaggatgcaagtcagtggcagctggtatgaatgcaatggaccttagacggggtattaccatggctgtagattctgttgtgacaaacctgaaaagcagagcacggatgatcagtacatctgaggaaattgcacaggttgggactatctctgcaaacggagaaagagtaattggcgacctcattgcaagggcaatggagaaagtaggcaaggagggagtcatcactattcaagacgggaagacattgctcaatgagttggatgttgttgaagggatgaagttggatagaggttacatatcaccatacttcatcacaaatcagaagaatcagaaatgtgaactggataacccactaattctgattcatgagaaaaagatctcaagcattaatgctgttgtgaaagcattggagttagctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49569" stop="53314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49869" g_stop="49942" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="99" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="231" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="391" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51893" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="567" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52235" g_stop="52330" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="663" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52704" g_stop="52808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="768" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52931" g_stop="53014" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="852" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E708072" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49869" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51893"/>
          <exon e_start="52235" e_stop="52330"/>
          <exon e_start="52704" e_stop="52808"/>
          <exon e_start="52931" e_stop="53014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAGGTATCTTTGCAAGTTTTTGAACTTGCACATTAAAAATACTGCTTTTCTGGTACATACAATTCTCTATCTTTTGCAGGCAACCTCCTCCCTCCCTAGAAGCCTCTAAGCCTGACCCCTCCCAACCTAACGCCAAAAAAAAAAAGAGAAAGAAAAGAAAATAAACAGTGAAAAGGAACTCATAGGGAAGCAGTACTACTAGTAGAAGGAGAAAAAGGCAGAAGTAAAAGATTTCCCGTGAAAGTAGATTTAATAATGCACTGAAGAGTTCTGTGTAACTTCTTCTTTGCTTAAGTGATACTCTTCTTCTTCCCATAAGATTTTGATATTGTAACTATTGATAGGTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAAGTAAGTAATCGTATTGTCTATCTATTTATGCATTCTCTGTATGCATCTTTTGGTCACTGTGGTCCTTACTTATCTCTGTGAGCTTCAAAATGAAGCTTCTGATTTCAATATGCTCTTGGGATGTGGGTGGAGCTGGAGTAGAAGATATATTTGCCGAGTTTAACTAATTGATACCTGATGAATATTAGTGTTATATGGGAGAATTTGGGCTAGAAATCAAGCATATAGGATTTTGATAAGTTATTTGTTGCCCAGTTATGAGAAACATCTTTTCATAGTCCAATTTGTATCTATTTGTTATACACTTCGGCTAATTTGTGGGAGACTTGTTACTTTAATGATGTGTAGCTAACTCATTTCTACTATCACACAGGACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGTGTATGTTTTTGGCTTGCTAATCTTAGTTAAGCTCACATGAGTTTGCTCGCTGTGCCAACATTCTTTACATATTTTGCACCATTCTCTTGTTTAAAATTCACTATTCTCCTGATGTCTGGCAGGAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTG</genome_strand>
        <mrna_strand>CCATTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG...........................................................................................................TGTTGCAAGAACCAGTTCCCAAAAG....................................................................................ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG.....................................................................................................................................................................................................................................................................................................................................................GTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA.....................................................................................................................................................................................................................................................................................................................................................................................GACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT..........................................................................................................................GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604308" ref_strand="+" ref_description="SGN-E604308 [74442]">
      <seq>cattttcactttcagcagcatttctcagtttcaaaatgtatcgttttgcagcaaatcttgcttctaaagccagagttgcaagaaccagttcccaacagattggtgggaggttcaattggagtagaaactatgctgcaaaggatatcagatttggagttgaagctagagctttgatgcttcaaggtgttgagcagcttgctgatgctgttaaagtcactatgggtccagaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtaacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49570" stop="51825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49870" g_stop="49942" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="98" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="230" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51525" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="324" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E604308" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49870" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGA</genome_strand>
        <mrna_strand>CATTTTCACTTTCAGCAGCATTTCTCAGTTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG...........................................................................................................AGTTGCAAGAACCAGTTCCCAACAG....................................................................................ATTGGTGGGAGGTTCAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTAACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480378" ref_strand="+" ref_description="SGN-E480378 [cSTD-13-P15]">
      <seq>ctttttctcagctgcaaaaaatttcttgtacaattatgtatcgttttgcagcaaaacttgcttctaaatccagggttgcaagaagcagcacccaacagattggtagtaggttgaattggagcagaaactatgctgctaaggatattaaatttggagttgaagctaggggactgatgcttcaaggagttgagcaacttgctgatgcagttaaagtcactatgggtccaaagggtcgtaatgtggtgattgaacaaagttggggtgcacccaaggtgacaaaagatggtgtcactgttgcaaaaagcatcgaattcaaggacaaaataaaaaatgttggtgccagccttgtaaagcaagttgccaatgccactaatgatgctgctggtgatggtaccacttgtgcaacagtcctcacccgagcaatatttgctgaagggtgcaagtctgtagctgctggtatgaatgcaatggatcttagacgaggtatcacaatggctgtcgatgctgttgtaacaaacctgaaaagcagagcacgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49599" stop="52165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49907" g_stop="49942" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="73" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="98" r_length="25" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="230" r_length="132" r_score="0.902"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="390" r_length="160" r_score="0.913"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="0.88"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51865" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="538" r_length="148" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E480378" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49907" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGAT</genome_strand>
        <mrna_strand>GTATCGTTTTGCAGCAAAACTTGCTTCTAAATCCAG...........................................................................................................GGTTGCAAGAAGCAGCACCCAACAG....................................................................................ATTGGTAGTAGGTTGAATTGGAGCAGAAACTATGCTGCTAAGGATATTAAATTTGGAGTTGAAGCTAGGGGACTGATGCTTCAAGGAGTTGAGCAACTTGCTGATGCAGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAGGTGACAAAAGATGGTGTCACTGTTGCAAAAAGCATCGAATTCAAGGACAAAATAAAAAATGTTGGTGCCAGCCTTGTAAAGCAAGTTGCCAATGCCACTAATGATGCTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTCCTCACCCGAGCAATATTTGCTGAAGGGTGCAAGTCTGTAGCTGCTGGTATGAATGCAATGGATCTTAGACGAGGTATCACAATGGCTGTCGATGCTGTTGTAACAAACCTGAAAAGCAGAGCACGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479989" ref_strand="+" ref_description="SGN-E479989 [cSTD-12-K3]">
      <seq>ctttttctcagctgcaaaaaatttcttgtacaattatgtatcgttttgcagcaaaacttgcttctaaatccagggttgcaagaagcagcacccaacagattggtagtaggttgaattggagcagaaactatgctgctaaggatattaaatttggagttgaagctaggggactgatgcttcaaggagttgagcaacttgctgatgcagttaaagtcactatgggtccaaagggtcgtaatgtggtgattgaacaaagttggggtgcacccaaggtgacaaaagatggtgtcactgttgcaaaaagcatcgaattcaaggacaaaataaaaaatgttggtgccagccttgtaaagcaagttgccaatgccactaatgatgctgctggtgatggtaccacttgtgcaacagtcctcacccgagcaatatttgctgaagggtgcaagtctgtagctgctggtatgaatgcaatggatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49599" stop="52103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49907" g_stop="49942" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="73" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="98" r_length="25" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="230" r_length="132" r_score="0.902"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="390" r_length="160" r_score="0.913"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="0.88"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51803" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="476" r_length="86" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E479989" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49907" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTT</genome_strand>
        <mrna_strand>GTATCGTTTTGCAGCAAAACTTGCTTCTAAATCCAG...........................................................................................................GGTTGCAAGAAGCAGCACCCAACAG....................................................................................ATTGGTAGTAGGTTGAATTGGAGCAGAAACTATGCTGCTAAGGATATTAAATTTGGAGTTGAAGCTAGGGGACTGATGCTTCAAGGAGTTGAGCAACTTGCTGATGCAGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAGGTGACAAAAGATGGTGTCACTGTTGCAAAAAGCATCGAATTCAAGGACAAAATAAAAAATGTTGGTGCCAGCCTTGTAAAGCAAGTTGCCAATGCCACTAATGATGCTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTCCTCACCCGAGCAATATTTGCTGAAGGGTGCAAGTCTGTAGCTGCTGGTATGAATGCAATGGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572985" ref_strand="+" ref_description="SGN-E572985 [32225]">
      <seq>aaatgttggtgctagcctgntaaaacaagtcgccaatgcaacgaatgatgttgctggtgatggtaccacttgtgcaacagtcctcacccgagcaatatttgctgaaggatgcaagtcagtggcagctggtatgaatgcaatggaccttagacggggtattaccatggctgtagattctgttgtgacaaacctgaaaagcagagcacggatgatcagtacatctgaggaaattgcacaggttgggactatctctgcaaacggagaaagagaaattggcgacctaattgcaagggctatggagaaagtaggcaaggagggagtcatcactattcaagatgggaaaacgttgctcaatgagttggatgttgttgaagggatgaagttggatagaggttacatatcaccatacttcatcacaaatcagaagaatcagaaatgtgaactggataacccactaattctgattcatgagaaaaagatctcaagcgttaatgctgttgtgaaagcattggagttagctctgaagagacaaaggcctctcttgattgtggcagaagatgtggacaatgaagcactcgccactcttattttgaacaagctccgtgctggaatcaaggtttgtgccatcaaagcaccaggctttggtgaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="51230" stop="53626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51530" g_stop="51591" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51718" g_stop="51893" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="238" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52235" g_stop="52330" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="334" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52704" g_stop="52808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="439" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52931" g_stop="53017" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="526" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53018" i_stop="53110" i_length="93">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53111" g_stop="53200" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="616" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53289" g_stop="53326" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="654" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E572985" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51530" e_stop="51591"/>
          <exon e_start="51718" e_stop="51893"/>
          <exon e_start="52235" e_stop="52330"/>
          <exon e_start="52704" e_stop="52808"/>
          <exon e_start="52931" e_stop="53017"/>
          <exon e_start="53111" e_stop="53200"/>
          <exon e_start="53289" e_stop="53326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAGGTATCTTTGCAAGTTTTTGAACTTGCACATTAAAAATACTGCTTTTCTGGTACATACAATTCTCTATCTTTTGCAGGCAACCTCCTCCCTCCCTAGAAGCCTCTAAGCCTGACCCCTCCCAACCTAACGCCAAAAAAAAAAAGAGAAAGAAAAGAAAATAAACAGTGAAAAGGAACTCATAGGGAAGCAGTACTACTAGTAGAAGGAGAAAAAGGCAGAAGTAAAAGATTTCCCGTGAAAGTAGATTTAATAATGCACTGAAGAGTTCTGTGTAACTTCTTCTTTGCTTAAGTGATACTCTTCTTCTTCCCATAAGATTTTGATATTGTAACTATTGATAGGTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAAGTAAGTAATCGTATTGTCTATCTATTTATGCATTCTCTGTATGCATCTTTTGGTCACTGTGGTCCTTACTTATCTCTGTGAGCTTCAAAATGAAGCTTCTGATTTCAATATGCTCTTGGGATGTGGGTGGAGCTGGAGTAGAAGATATATTTGCCGAGTTTAACTAATTGATACCTGATGAATATTAGTGTTATATGGGAGAATTTGGGCTAGAAATCAAGCATATAGGATTTTGATAAGTTATTTGTTGCCCAGTTATGAGAAACATCTTTTCATAGTCCAATTTGTATCTATTTGTTATACACTTCGGCTAATTTGTGGGAGACTTGTTACTTTAATGATGTGTAGCTAACTCATTTCTACTATCACACAGGACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGTGTATGTTTTTGGCTTGCTAATCTTAGTTAAGCTCACATGAGTTTGCTCGCTGTGCCAACATTCTTTACATATTTTGCACCATTCTCTTGTTTAAAATTCACTATTCTCCTGATGTCTGGCAGGAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAGGTGATCCTCTTACTGAGATTATCAGTTTGGTGTCTATGAGATTGATCATGTTGCTGTCTATCTTACTCTTGCAGTCTTATTTCATCTATGCAGAGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAGGTATACTGATGAGTGATCGGTATTTCCTGTTCTGTGGTTCGACTTTTCCTCAGTCTGGTGATTATGTATTGTCTGTAAATGTCTACAGGTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAG</genome_strand>
        <mrna_strand>AAATGTTGGTGCTAGCCTGNTAAAACAAGTCGCCAATGCAACGAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTCCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG.....................................................................................................................................................................................................................................................................................................................................................GTTGGGACTATCTCTGCAAACGGAGAAAGAGAAATTGGCGACCTAATTGCAAGGGCTATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA.....................................................................................................................................................................................................................................................................................................................................................................................GATGGGAAAACGTTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT..........................................................................................................................GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCGTTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAG.............................................................................................AGACAAAGGCCTCTCTTGATTGTGGCAGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAGCTCCGTGCTGGAATCAAG........................................................................................GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454592" ref_strand="+" ref_description="SGN-E454592 [cSTS-23-F20]">
      <seq>ggaccttagacggggtattaccatggctgtagattctgttgtgacaaacctgaaaagcagagcacggatgatcagtacatctgaggaaattgcacaggttgggactatctctgcaaacggagaaagagaaattggcgacctaattgcaagggctatggagaaagtaggcaaggagggagtcatcactattcaagatgggaaaacgttgctcaatgagttggatgttgttgaagggatgaagttggatagaggttacatatcaccatacttcatcacaaatcagaagaatcagaaatgtgaactggataacccactaattctgattcatgagaaaaagatctcaagcgttaatgctgttgtgaaagcattggagttagctctgaagagacaaaggcctctcttgattgtggcagaagatgtggacaatgaagcactcgccactcttattttgaacaagctccgtgctggaatcaaggtttgtgccatcaaagcaccaggctttggtgaaaacaggaaagcttatttgcaagatcttgctattttaactggaggccaagtcataacagaagagcttggactgaacattgaaaatttggagttcgagatgctgggaacatgtaaagaggcgactatctctaaggatgatactgtcattcttgatggtgctggtgagaagaagtccatagaggaacgatgtgaactgattagatcaaccattgaacagagcacatctgactatgacagggagaagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="51497" stop="54244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51797" g_stop="51893" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52235" g_stop="52330" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="193" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52704" g_stop="52808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="298" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52931" g_stop="53017" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53018" i_stop="53110" i_length="93">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53111" g_stop="53200" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="475" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53289" g_stop="53369" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="556" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53460" g_stop="53528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="625" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53724" g_stop="53801" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="703" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53893" g_stop="53944" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="755" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E454592" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51797" e_stop="51893"/>
          <exon e_start="52235" e_stop="52330"/>
          <exon e_start="52704" e_stop="52808"/>
          <exon e_start="52931" e_stop="53017"/>
          <exon e_start="53111" e_stop="53200"/>
          <exon e_start="53289" e_stop="53369"/>
          <exon e_start="53460" e_stop="53528"/>
          <exon e_start="53724" e_stop="53801"/>
          <exon e_start="53893" e_stop="53944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAGGTATCTTTGCAAGTTTTTGAACTTGCACATTAAAAATACTGCTTTTCTGGTACATACAATTCTCTATCTTTTGCAGGCAACCTCCTCCCTCCCTAGAAGCCTCTAAGCCTGACCCCTCCCAACCTAACGCCAAAAAAAAAAAGAGAAAGAAAAGAAAATAAACAGTGAAAAGGAACTCATAGGGAAGCAGTACTACTAGTAGAAGGAGAAAAAGGCAGAAGTAAAAGATTTCCCGTGAAAGTAGATTTAATAATGCACTGAAGAGTTCTGTGTAACTTCTTCTTTGCTTAAGTGATACTCTTCTTCTTCCCATAAGATTTTGATATTGTAACTATTGATAGGTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAAGTAAGTAATCGTATTGTCTATCTATTTATGCATTCTCTGTATGCATCTTTTGGTCACTGTGGTCCTTACTTATCTCTGTGAGCTTCAAAATGAAGCTTCTGATTTCAATATGCTCTTGGGATGTGGGTGGAGCTGGAGTAGAAGATATATTTGCCGAGTTTAACTAATTGATACCTGATGAATATTAGTGTTATATGGGAGAATTTGGGCTAGAAATCAAGCATATAGGATTTTGATAAGTTATTTGTTGCCCAGTTATGAGAAACATCTTTTCATAGTCCAATTTGTATCTATTTGTTATACACTTCGGCTAATTTGTGGGAGACTTGTTACTTTAATGATGTGTAGCTAACTCATTTCTACTATCACACAGGACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGTGTATGTTTTTGGCTTGCTAATCTTAGTTAAGCTCACATGAGTTTGCTCGCTGTGCCAACATTCTTTACATATTTTGCACCATTCTCTTGTTTAAAATTCACTATTCTCCTGATGTCTGGCAGGAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAGGTGATCCTCTTACTGAGATTATCAGTTTGGTGTCTATGAGATTGATCATGTTGCTGTCTATCTTACTCTTGCAGTCTTATTTCATCTATGCAGAGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAGGTATACTGATGAGTGATCGGTATTTCCTGTTCTGTGGTTCGACTTTTCCTCAGTCTGGTGATTATGTATTGTCTGTAAATGTCTACAGGTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAAGTGAGAACTGTTGAACTGTGCTAATGTATGAGATAGTTGATATTTGTCTTAATGATACCTAACCAACGTGTATTACTGCTTGTTTGGTAGGTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAGGTATTTTTGCTGCGTGATTTGGCTGTAGTTGTTTCTTTTACTATGTATGTTTTCTTTTGAATATATATAAGTGCATGAAAAATTGTGCATAATGTGATACATGTTTGGTATTTCTAGTGAGTTATACGCTGGGTAGGGGGGGTCGACTTTATATATGTGTCTCCTACTGTTTTACTCATGCTTTCCTTTCCCTAGGCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTGGTTCGTTTTGCTTACTTTTTCACCAATATCAGTAAAAGCACTGTACTTCTGCATGAGGTTGAGCATATACTCGTGCTCTTTGTATTTGCAGATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGC</genome_strand>
        <mrna_strand>GGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG.....................................................................................................................................................................................................................................................................................................................................................GTTGGGACTATCTCTGCAAACGGAGAAAGAGAAATTGGCGACCTAATTGCAAGGGCTATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA.....................................................................................................................................................................................................................................................................................................................................................................................GATGGGAAAACGTTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT..........................................................................................................................GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCGTTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAG.............................................................................................AGACAAAGGCCTCTCTTGATTGTGGCAGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAGCTCCGTGCTGGAATCAAG........................................................................................GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAA..........................................................................................GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACATGTAAAGAG...................................................................................................................................................................................................GCGACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATAGAGGAACGATGTGAACTG...........................................................................................ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAGGGAGAAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462430" ref_strand="+" ref_description="SGN-E462430 [cPRO-11-L23]">
      <seq>agagacaaaggcccctcttgattgtggctgaagatggggacaatgaagcactcgccactcttattttgaacaagctccgagctggaatcaaggtttgtgccatcaaagcaccatgctttggtgaaaacaggaaagcttatttgcaagatcttgctattctaactggaggccaagtcataacagaagagcttggactgaacattgaaaatttggagttcgagatgctgggaacatgtaaagaggcgactatctctaaggatgatactgtcattcttgatggtgctggtgagaagaagtccatagaggaacgatgtgaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="52809" stop="54103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53109" g_stop="53200" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53289" g_stop="53369" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="173" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90">
            <donor d_prob="0.796" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53460" g_stop="53528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="242" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53724" g_stop="53801" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="320" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E462430" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53109" e_stop="53200"/>
          <exon e_start="53289" e_stop="53369"/>
          <exon e_start="53460" e_stop="53528"/>
          <exon e_start="53724" e_stop="53801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAGGTATACTGATGAGTGATCGGTATTTCCTGTTCTGTGGTTCGACTTTTCCTCAGTCTGGTGATTATGTATTGTCTGTAAATGTCTACAGGTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAAGTGAGAACTGTTGAACTGTGCTAATGTATGAGATAGTTGATATTTGTCTTAATGATACCTAACCAACGTGTATTACTGCTTGTTTGGTAGGTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAGGTATTTTTGCTGCGTGATTTGGCTGTAGTTGTTTCTTTTACTATGTATGTTTTCTTTTGAATATATATAAGTGCATGAAAAATTGTGCATAATGTGATACATGTTTGGTATTTCTAGTGAGTTATACGCTGGGTAGGGGGGGTCGACTTTATATATGTGTCTCCTACTGTTTTACTCATGCTTTCCTTTCCCTAGGCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG</genome_strand>
        <mrna_strand>AGAGACAAAGGCCCCTCTTGATTGTGGCTGAAGATGGGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAGCTCCGAGCTGGAATCAAG........................................................................................GTTTGTGCCATCAAAGCACCATGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTCTAACTGGAGGCCAA..........................................................................................GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACATGTAAAGAG...................................................................................................................................................................................................GCGACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATAGAGGAACGATGTGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699339" ref_strand="+" ref_description="SGN-E699339 [FA09CG12]">
      <seq>ccgttataacagaagagcttggactgaacattgaaaatttggagttcgagatgctgggaacaagtaaagaggcaactatctctaaggatgatactgtcattcttgatggtgctggtgagaagaagtccatcgaggaacgatgcgaactgattagatcaaccattgaacagagcacatctgactatgacaaggagaagttgcaggaaagactagctaagctttcagggggtgttgctgtgttaaagattggaggagccagtgaagctgaggttggtgaaaagaaagatagagtaactgatgctttgaacgccacaaaggctgcagtggaggaaggaattgttccaggtggtggtgttgctcttctttatgcagcaagagaattggataatttgacaacagccaactttgaccagaagattggtgtacaaattattcagaatgctctgaagacgccagtacatacaatagcctctaacgcaggagtagagggtgctgtcgtggttggcaaattgttggatcaggacaaccttgatcttggatatgatgcggccaagggtgaatatgtagatatgataaaggcaggaatcatcgatccagtgaaagtgatcaggacagctttggtcgatgctgccagtgtctcgtctcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="53160" stop="55136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53458" g_stop="53528" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53724" g_stop="53801" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="149" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53893" g_stop="53988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="245" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54128" g_stop="54227" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="345" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54308" g_stop="54411" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="449" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54530" g_stop="54714" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="634" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.632" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54819" g_stop="54836" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="652" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E699339" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53458" e_stop="53528"/>
          <exon e_start="53724" e_stop="53801"/>
          <exon e_start="53893" e_stop="53988"/>
          <exon e_start="54128" e_stop="54227"/>
          <exon e_start="54308" e_stop="54411"/>
          <exon e_start="54530" e_stop="54714"/>
          <exon e_start="54819" e_stop="54836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAGGTATTTTTGCTGCGTGATTTGGCTGTAGTTGTTTCTTTTACTATGTATGTTTTCTTTTGAATATATATAAGTGCATGAAAAATTGTGCATAATGTGATACATGTTTGGTATTTCTAGTGAGTTATACGCTGGGTAGGGGGGGTCGACTTTATATATGTGTCTCCTACTGTTTTACTCATGCTTTCCTTTCCCTAGGCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTGGTTCGTTTTGCTTACTTTTTCACCAATATCAGTAAAAGCACTGTACTTCTGCATGAGGTTGAGCATATACTCGTGCTCTTTGTATTTGCAGATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAGGTATGCCTCTGTTAGCAACCTGTGTAAATTAAGTTTCTAAAGAAGAATTCAAACTTTTTTATTAGAGGGAAATAGTTGCAACTGTTAATTCAGACTCGTTATTATAACATGCCATCACAGAATGTGTATTAATTTTCAGATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAGGTTTAATACATGTCCGTGAGTTTGTAGCAAAATGGGAAGATCCAATAGTCCGAGATTATTGATCCTCTTTTGTCTTGCAGGTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAGGTTTGCTATGCTCCCTTCTAACCCTGCTAATTAGCTTCTTAGTAATAAAGTAGTTTCACTCCGAGTACTATCTTGTGTTGTGAATGACTTGTGACTTGGTTGAACTTTGTGTTTGCAGACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAGGTTAGCATATAACCCCCTTCCTATTTTCTTGTTCTTCCATCGTTAAGACTTGAGACATTGGCCTCACATTCTTGCCAACGTAACGCCCCTTGTGTTCTATGCAGTGTCTCGTCTCTTTTGAC</genome_strand>
        <mrna_strand>CCGTTATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG...................................................................................................................................................................................................GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG...........................................................................................ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG...........................................................................................................................................ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG................................................................................GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG......................................................................................................................ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG........................................................................................................TGTCTCGTCTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445889" ref_strand="+" ref_description="SGN-E445889 [cSTA-19-M7]">
      <seq>agagaactagtctcgaggcgactatctctaaggatgatactgtcattcttgatggtgctggtgagaagaagtccatagaggaacgatgtgaactgattagatcaaccattgaacagagcacatctgactatgacaaggagaagttgcaggaaagactagctaagctttcagggggtgttgctgtgttaaagattggaggtgccagtgaagctgaggttggtgaaaagaaagatagagtaactgatgctttgaatgccacaaaggctgcagtggaggaaggaattgttccaggtggtggtgttgctcttctttatgcagcaagagaattggataatttgacaacagccaactttgaccagaagattggtgtacaaattattcagaatgctctgaagacaccagtacatacaatagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="53417" stop="54852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53512" g_stop="53528" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53724" g_stop="53801" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="95" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53893" g_stop="53988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="191" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54128" g_stop="54227" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="291" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54308" g_stop="54411" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="395" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54530" g_stop="54552" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="418" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E445889" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53512" e_stop="53528"/>
          <exon e_start="53724" e_stop="53801"/>
          <exon e_start="53893" e_stop="53988"/>
          <exon e_start="54128" e_stop="54227"/>
          <exon e_start="54308" e_stop="54411"/>
          <exon e_start="54530" e_stop="54552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAACAAGTAAAGAGGTATTTTTGCTGCGTGATTTGGCTGTAGTTGTTTCTTTTACTATGTATGTTTTCTTTTGAATATATATAAGTGCATGAAAAATTGTGCATAATGTGATACATGTTTGGTATTTCTAGTGAGTTATACGCTGGGTAGGGGGGGTCGACTTTATATATGTGTCTCCTACTGTTTTACTCATGCTTTCCTTTCCCTAGGCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTGGTTCGTTTTGCTTACTTTTTCACCAATATCAGTAAAAGCACTGTACTTCTGCATGAGGTTGAGCATATACTCGTGCTCTTTGTATTTGCAGATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAGGTATGCCTCTGTTAGCAACCTGTGTAAATTAAGTTTCTAAAGAAGAATTCAAACTTTTTTATTAGAGGGAAATAGTTGCAACTGTTAATTCAGACTCGTTATTATAACATGCCATCACAGAATGTGTATTAATTTTCAGATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAGGTTTAATACATGTCCGTGAGTTTGTAGCAAAATGGGAAGATCCAATAGTCCGAGATTATTGATCCTCTTTTGTCTTGCAGGTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAGGTTTGCTATGCTCCCTTCTAACCCTGCTAATTAGCTTCTTAGTAATAAAGTAGTTTCACTCCGAGTACTATCTTGTGTTGTGAATGACTTGTGACTTGGTTGAACTTTGTGTTTGCAGACGCCAGTACATACAATAGCCTC</genome_strand>
        <mrna_strand>AGAGAACTAGTCTCGAG...................................................................................................................................................................................................GCGACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATAGAGGAACGATGTGAACTG...........................................................................................ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG...........................................................................................................................................ATTGGAGGTGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAATGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG................................................................................GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG......................................................................................................................ACACCAGTACATACAATAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308508" ref_strand="+" ref_description="SGN-E308508 [cLEY-21-F1]">
      <seq>ttattcagaatgctctgaagacgccagtacatacaatagcctctaacgcaggagtagagggtgctgtcgtggttggcaaattgttggatcaggacaaccttgatcttggatatgatgcggccaagggtgaatatgtagatatgataaaggcaggaatcatcgatccagtgaaagtgatcaggacagctttggtcgatgctgccagtgtctcgtctcttttgaccacaactgaagcagttgttgtcgagcttcctaaggacgagaaggaatctcctgcaatgggtggcggtatgggtggtggtatgggtggcatggacttctgattgaaaagccaaaaacagtaattgcagctgcttgacacatttggtttatagaacaaagcaaaaaaataaatttagatttatttcctattttgatgaatctttttacgatagaaaacgcgcctattgtatcaatagcaagagagacaagaccattgtgaattcatgtttttgtaggttcaaaatttgtagtcttcatttgaatacgcagcttaaatataggtccatttcagtgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="54092" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54392" g_stop="54411" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54530" g_stop="54714" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="205" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.632" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54819" g_stop="55167" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="554" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="570"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E308508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54392" e_stop="54411"/>
          <exon e_start="54530" e_stop="54714"/>
          <exon e_start="54819" e_stop="55167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCAGAATGCTCTGAAGGTTTGCTATGCTCCCTTCTAACCCTGCTAATTAGCTTCTTAGTAATAAAGTAGTTTCACTCCGAGTACTATCTTGTGTTGTGAATGACTTGTGACTTGGTTGAACTTTGTGTTTGCAGACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAGGTTAGCATATAACCCCCTTCCTATTTTCTTGTTCTTCCATCGTTAAGACTTGAGACATTGGCCTCACATTCTTGCCAACGTAACGCCCCTTGTGTTCTATGCAGTGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGT</genome_strand>
        <mrna_strand>TTATTCAGAATGCTCTGAAG......................................................................................................................ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG........................................................................................................TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251652" ref_strand="-" ref_description="SGN-E251652 [cLEG-15-B19]">
      <seq>gggtgctgtcgtggttggcaaattgttggatcaggacaaccttgatcttggatatgatgcggccgagggtgaatatgtagatatgataaaggcaggaatcatcgatccagtgaaagtgatcaggacagctttggtcgatgctgccagtgtctcgtctcttttgaccacaactgaagcagttgttgtcgagcttcctaaggacgagaaggaatctcctgcaatgggtggcggtatgggtggtggtatgggtggcatggacttctgattgaaaagccaaaaacagtaattgcagctgcttgacacatttggtttatagaacaaagcaaaacaataaatttagatttatttcctattttgatgaatctttttacgatagaaaacgcgcctattgtatcaatagcaagagagacaagaccattgtgaattcatgtttttgtaggttcaccatttgtagtcttcatttgaaaaagaaaaaaaaaaaanctgagaatagttctctctccctgcagcccggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="54268" stop="74717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54568" g_stop="54714" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.632" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54819" g_stop="55155" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="483" r_length="336" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55156" i_stop="55493" i_length="338">
            <donor d_prob="0.000" d_score="0.76"/>
            <acceptor a_prob="0.335" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55494" g_stop="55529" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="518" r_length="35" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E251652" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251652" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54568" e_stop="54714"/>
          <exon e_start="54819" e_stop="55155"/>
          <exon e_start="55494" e_stop="55529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAGGTTAGCATATAACCCCCTTCCTATTTTCTTGTTCTTCCATCGTTAAGACTTGAGACATTGGCCTCACATTCTTGCCAACGTAACGCCCCTTGTGTTCTATGCAGTGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGTGTTCCTTTCTGGTTTTACTATTATATTGAGGTGTGATGAATTCATTTATACTTGTTCTACTGTTCTTTTTTCGAAACTTTTTGACTATGGAGATTGAATCTCTCCAAGCAACGTTTTTCAGTAGCAAGCTATGGTTAAACTTTTTCCGCAGTTGAAATCGACAAATGAAACAATTAGACTCAATAGGTGCACCCCTGACCAAAATTTAGGAGCATCAGATTAAGGTGTCCAAATACAAGAGTGGTTGATTATAAATTGGACCCTATTATTGTTGAAGAATTCTGAATATTCCTAATATATTGTATATGAACATTTTTGAACGATAGCTTAAGAAAACTTCTGGCTCGTGGAATTAGGGGTGA</genome_strand>
        <mrna_strand>GGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCGAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG........................................................................................................TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAACAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCACCATTTGTAGTCTTCATTTGAAAAAG-AAAAAAAAAAAAN..................................................................................................................................................................................................................................................................................................................................................C-TGAGAATAGTTCTCTCTCCCTGCAGCCCGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621542" ref_strand="+" ref_description="SGN-E621542 [75289]">
      <seq>gtctcgtctctcttgaccacaactgaagcagttgttgtcgagcttcctaaggatgagaaggaatctcctgcaatgggtggcggtatgggtggcggtatgggtggcatggacttctaattgaaaagccaaaaacagtaattgcagctgcttgacacacatttgtttagaacaaagcaaaaaaataaatttagagttgtttcctattttgatgaatctttacgatagaaaatgcgcctattgtatcaatagcaagagagaccattgtgaattcatgttttgtaggttcaaaatttgtagtcttcatttgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="54520" stop="55440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54820" g_stop="55140" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E621542" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54820" e_stop="55140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATAC</genome_strand>
        <mrna_strand>GTCTCGTCTCTCTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGATGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGCGGTATGGGTGGCATGGACTTCTAATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACACAT-TTGTTTAGAACAAAGCAAAAAAATAAATTTAGAGTTGTTTCCTATTTTGATGAATC--TTTACGATAGAAAATGCGCCTATTGTATCAATAGC-A-AGAG---AGACCATTGTGAATTCATG-TTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719893" ref_strand="+" ref_description="SGN-E719893 [FC09AG03]">
      <seq>aatcggccgaattgaacttttaaaagtaaaaatatgttgagctaattctaatcgaagcccatattagggcttcaaactcaaaatcaataattcatcgttagctgtttaaaattctcagaaaaatgtcattcatcgaagaatttcaagccaatatcgaagctcttccgaaccatttgcggaggaagtatgcgttgctgcgtgatttggataaaagtctgcaaggagtccagacccaaaatgaacaacgttgtgacaaagaaatagaggatatgatacagcgtattaaggctggtaatgtgacaccagactcttcactaatcaaattctctgacgatgcattggatgagcaaaagcatgcaatcaggattgctgatgaaaaagttgcactagcttctcaggcatatgatctggtagatgctcatattcagcagcttgatcagtacttgaaaaagtttgacgaagatctccggagagaacgggatactgctgttgttactggagctcctgctaccactgttgaaaataatgtcaaatctggaaggtctggtgagggtaagggagggcgtaaaaaaacacgtcttgctacagcagctgcagctacagccactgcagcaacaccaagtggaatggatttggatctgcctgttgatccaaacgaaccaacatactgtttctgcaatcaagttagctatggtgaaatggttgcttgcgacaatcctaattgcaaaatagagtggttccactacggctgcgttggcctcaaagaacagcccaaggggaaatggttttgcgcagattgtgcaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="63165" stop="57986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62866" g_stop="62729" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="150" r_length="137" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62728" i_stop="62035" i_length="694">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62034" g_stop="61963" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="222" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61962" i_stop="61449" i_length="514">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61448" g_stop="61261" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="410" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61260" i_stop="60392" i_length="869">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60391" g_stop="60328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="474" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60327" i_stop="60235" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60234" g_stop="60138" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="571" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60137" i_stop="58610" i_length="1528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58609" g_stop="58459" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="722" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58458" i_stop="58372" i_length="87">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58371" g_stop="58286" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="808" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E719893" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62866" e_stop="62729"/>
          <exon e_start="62034" e_stop="61963"/>
          <exon e_start="61448" e_stop="61261"/>
          <exon e_start="60391" e_stop="60328"/>
          <exon e_start="60234" e_stop="60138"/>
          <exon e_start="58609" e_stop="58459"/>
          <exon e_start="58371" e_stop="58286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTAAAAAGTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCAGTAAGTTTCAATTTTTATTTTTTTTTGAATTTTTTTGAATCCGTTTCAGTTTCTGTTCTATAGATTCATGTAAAGATTGAATTTTTGTTTCGAATTCATAAGCCTGAAATTGAGAAAAAATAAATTCAGTACAATTCTAAGGATGCTGTGTACTTTATATGTGTTAAAATAGTTGTCATGTTTCGCTTCGCGAGGAAAAAGGGGATTTTTTGTTAATAGAAAAAAAAAGAAACAAGTGTTTATAGCTATAATGATATAAATAAATATACTCATCCGAGCTGGAATACGAGAATTTCCACCTTGTTGAAGATCTAGTGGTGCTACCCGAAGACTTAAATGAATAGCCAATGAGAATTTGTGTGTAGCTTTTGGTCAATATGACTAATTTTTTCGAGCTAAATTGGATTAGATTAAGTCGATTTTAGTGATTAAGTGAAATAGTTATTGTTTAGTGATGAGTTCATGGTAGAAACGATTAGCGATAAGATGCACGGTTTTTATTGTTCTGGTCCCTGAATTGAAGCGCTGCCTAAGTGACGTGGAACACTCGAGAGTGATTTTTAGTATTCGAGTGTGATTTTTAGTATTGTCTGTGTAAGAGTGATGTGTGATTAATTATATAGGAATTAGTTATTCCTCTGTGCAATCATGGTTTGATTTTTAACAAGTTGCTATGTTGATGATATTATCTCAGATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAGGTATTACTTAATAGTTCAAACTTTATATATTATTGGACTAATAATGTTCTCTTAGCGAGTTAGTTTCTTTCTGACTTTCCATTTTGATGTGCTTATTAAGAACATTTGTACATTGTTGAGTCGATTGATAATTTTCTGAGTGTGGAAATGTTATGTATTTTGAGTCCCATTGCATTATATCTAATGAAATGTCTACTAATGCAATTAGCTTAGTGGAACTGTAGAAGATTCACTGGTATATCCTCATTAAATTGCTGAAACAGAACAGTAATGCTTTGGTCTTCTGGTTGCCACTGGCTCCTTTGTTTTTTTTTTAGAATGCAAAAAACGATGTTGATAAATATACTCCTGATTGGCTAAAAGAAGATAGGGTAATTTTCTAAGATTCTCAATAGCATTTATTATTGCTGTGTTTGTAGCTCGACACAAGCACATCAGGTTTAATGTGTATGCTGTTTCTTCGTTTCTTAGTTTGTGGCATTATTACCAAATAAGTGCTTTTTTTTCTGAACAGGAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTGGTAGGGATTTTGGAAACTGCATCTTCTTTCTACATCAAGCAAACTGTTTCGTTCAATGTTCACAGTTCCTTCACTTCAATCTATTCTAGGTGCATTTGCTATAAGCTTAGTTGTTCAGACTCCTTATTTTAGCTTTCTTTGTAAGTTGGATTATGATGATCGTCGTGAAGTTACTTAGTCTTATTCACTTGATACTTGAATGGGATAGAATATAGAAATGTTTATGAGTTAATCTTTGAAGAAGAGTGTTAATCCTTGACCTTTAGAAGAAAGTATTTGTCTAAATTCCCTTTGTTCCTGAATTACAGAAGAGAAAACTTACGGCATTACTTAGAGGCTGGTTTTGAATGACAATTATTACCAAGTTCCTGTTTGAATATATGGTGGATAGGTAAGTTTTCCAATTTTATTTCAAGGACACAAAAATGATCATGATTGTGAATTGTGATCATAAAATCATGTCCCGAAAAGTTGTATAAATTCCTAAAGGCCACTAACTAAGGAGCTTCTGTAAGATTTTTATTTGAGCAACCCAGACATGAACTTAGTTTTGGTTGCTGAATCCCTTATTAAACTAAATTTTAGGTGTGAACTTCCTTGAAAATATGCTCCAAGATGCACTTAGACGAGATCTGCCAGGTGTTAACTGAATGAATATCATGCATAAATACAAACTGATACAATGAGGAGGAGTAAATGATTGGTTGTACACATTGCTTCACTGGTATATACTTTTGTTTTTATTCCTTCTCAGATAAGTAATAATTGTGTGGTTTGAAATTGAGGTTTGGTAAGGGTAGTAGGTTTTGTTTATTATTGGATCATTAATCTACTCTTTATGGCAATCAGTGAGAAAATTCTTGCAACAGGTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGTTTGACGAAGATCTCCGGAGAGGTATGTCTGTATCAGCTTCCTCATCTTTTCACCAAGAACAGTGGCATAACTTATGCATTCTCTGACTGTAGAACAACTTTCTCTTTTATGCAGAACGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAAGGGAGGGCGTAAAAAGTAAGTGCTATATTTTTTTCCTGAATATAAAGCCATCATAGTAATCACTGAATGGTCTTTTCGTAGGAAACTTGCTTTAGCCGCACCTTTCCTTATTTTTTTCAGTTAAATTTTTTCTTATAGGGAGCTTTTAGTTGTGTTATTCACCAACCTATTCTAGACAAGTTCCATTTTTTTTATATGGTATCAGGGCTTCTATGACGTCAGTAAAGACCAGTGTAACACCGGCCTACTGTTGGCCTGCTTCTGATGTCTACTTTGCCAAAGCTGCTTCTTCTTTGTATAAGTTTGATATTCCTTTTCTTTTTCCTATGACTATTATGTGTCTTTTTTGGTTATCCTTTTGGTGGCACCTAGAGGCAGAGGTGGGTCCAGGAGTTGAATTTTATGGGTTCTTTCGACGACTTCTGATACACGATAATACTAGTTCACAAAAAGTATAAATAGTTAGGGAATATTTTAAGACATGTGTAGGATTTCAGCAAAAGCTACTGGTTCCCAGAAACCTGCACCCAACATGTTGCATCCACCCTTGGTGGCACCATCTCTCTAGACCACTATTCCATCTATTCCTCCAACAATTTTCAAGTAAAAATATTCCTCCAAACTCCTTTACATATTTTATTAATTGTGCAAGTGTACGAGTATTTAGTTCCTTCTTTAAACATTGAATTCTGCTCATTGTCTTAGAGATCTTCTCTTCTTTCTTCATGGTAATAGAGTTTGTGCACTGAGGCCCTTGTTTGAGTTTTATTTTCAATTGTGCCGAGAGTTTTCTTCTCTTGTTTTTTCCTCTTACAAGATTTTGGATGTTAATCTCCCTTGAACATTGAATTTTTCGCCATTGTTTGATCACTTTTTCCAGTTACTCTTTAGCGGCCTATTCAAGCTAATATGAAATTCAACAGGCTATTGAAGTTATGTTTATGTATTAAAAGTATGTAAGGTTCTAAATGGTACTGATACAATTTGGAGTTTTGGGTATTTAGGAAAGTTTCCCTTTGTAAGGGAGGAATTGGATTTTTCATATTTACTAGTTTGAATTCCCACGGCACCAAAAAATGTTCGTCTTCTTACTCGCCTGAAGATTTACATAAATAATAAGGTATATCATGTTGCTTTGCCTTGTACGTTTGCCCCCAAATATTTTACCCTAGGTTGCTATTCTTTATCGGCAATGTAGTCGCCCTGTAATTTCTGAACAAACATTTTATCCTTTTCCTTTATGACCCACAAAAAGTTTCATCAAGTGTAAGCAGAACAACTTGCTTGATCCATGAGTTTGGTAAGAAGTGGCTTCCCTTGGAAACTGAACCAGCTTAATTTTCTAGTGGTGTTAGTTTTCCAAGTCCCAACGTTTTTTTTCGCCATTCTGTCGGCTTCTGTGGCCAAGGGAAGCCACTTGGGGGAATAGTTGTTATCTGTCGGTTTCTGTGGCCCAACTGATGAACGCTTGTGTGAATGTATATATCTGTCCTTACGTGGTATTATATTGAACTTGTTGTGAAGAGAATAATTTGTTCTGCAGAACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAGCAACACCAAGTGGAATGGATTTGGATCTGCCTGTTGATCCAAACGAACCAACATACTGTTTCTGCAATCAAGTTAGCTATGGTGAAATGGTTGCTTGCGACAATCCTAATGTACGTACTCAGCTCAGTCTTACCAATCATCTCCTTAAAACTTTAGTACATTGAACAATTGCTAAAATTTACTATTCCCTTCAACAGTGCAAAATAGAGTGGTTCCACTACGGCTGCGTTGGCCTCAAAGAACAGCCCAAGGGGAAATGGTTTTGCGCAGATTGTGCAGGAAC</genome_strand>
        <mrna_strand>GAACTTTTAAAA-GTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGTTTGACGAAGATCTCCGGAGAG.............................................................................................AACGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAAGGGAGGGCGTAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAGCAACACCAAGTGGAATGGATTTGGATCTGCCTGTTGATCCAAACGAACCAACATACTGTTTCTGCAATCAAGTTAGCTATGGTGAAATGGTTGCTTGCGACAATCCTAAT.......................................................................................TGCAAAATAGAGTGGTTCCACTACGGCTGCGTTGGCCTCAAAGAACAGCCCAAGGGGAAATGGTTTTGCGCAGATTGTGCAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446242" ref_strand="+" ref_description="SGN-E446242 [cSTA-20-O2]">
      <seq>agcccatattaaggcttgaaactcaaaatcaataattcatcgctggctgtaaagagctcataaaaatgtcattcatcgaacaatttcaagccaatatcgaagctcttccaaatcatttgcggaggaagtatgcgtcgctgcgtgatttggataaaagtctgcaaggagtccatacccaaaatgaacagcgttgtgacaaagaaatagaggatatgatacaccgcattaaggctggtaatgtgacaccagactcttcactaatcaaattctctgatgatgcatcggatgagcaaaaacatgcaatcaggattgctgatgaaaaagttgcactagcttctcaggcatatgatctggtagatgctcatattcagcagctcgatcagtacttgaaaaagtttgacgaatatctccggcgagaaagggatactgctgttgttactggagctcctgctaccactgttgaaaataatgtcaaatctggaaggtctggtgagggtaacggagggcgtaaaaaaacacgtcttgctacagcagctgcagctacagccactgcaacaacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="63123" stop="58261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62823" g_stop="62729" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62728" i_stop="62035" i_length="694">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62034" g_stop="61963" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="165" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61962" i_stop="61449" i_length="514">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61448" g_stop="61261" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="353" r_length="188" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61260" i_stop="60392" i_length="869">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60391" g_stop="60328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="417" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60327" i_stop="60235" i_length="93">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60234" g_stop="60138" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="514" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60137" i_stop="58610" i_length="1528">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58609" g_stop="58561" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="563" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E446242" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62823" e_stop="62729"/>
          <exon e_start="62034" e_stop="61963"/>
          <exon e_start="61448" e_stop="61261"/>
          <exon e_start="60391" e_stop="60328"/>
          <exon e_start="60234" e_stop="60138"/>
          <exon e_start="58609" e_stop="58561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCAGTAAGTTTCAATTTTTATTTTTTTTTGAATTTTTTTGAATCCGTTTCAGTTTCTGTTCTATAGATTCATGTAAAGATTGAATTTTTGTTTCGAATTCATAAGCCTGAAATTGAGAAAAAATAAATTCAGTACAATTCTAAGGATGCTGTGTACTTTATATGTGTTAAAATAGTTGTCATGTTTCGCTTCGCGAGGAAAAAGGGGATTTTTTGTTAATAGAAAAAAAAAGAAACAAGTGTTTATAGCTATAATGATATAAATAAATATACTCATCCGAGCTGGAATACGAGAATTTCCACCTTGTTGAAGATCTAGTGGTGCTACCCGAAGACTTAAATGAATAGCCAATGAGAATTTGTGTGTAGCTTTTGGTCAATATGACTAATTTTTTCGAGCTAAATTGGATTAGATTAAGTCGATTTTAGTGATTAAGTGAAATAGTTATTGTTTAGTGATGAGTTCATGGTAGAAACGATTAGCGATAAGATGCACGGTTTTTATTGTTCTGGTCCCTGAATTGAAGCGCTGCCTAAGTGACGTGGAACACTCGAGAGTGATTTTTAGTATTCGAGTGTGATTTTTAGTATTGTCTGTGTAAGAGTGATGTGTGATTAATTATATAGGAATTAGTTATTCCTCTGTGCAATCATGGTTTGATTTTTAACAAGTTGCTATGTTGATGATATTATCTCAGATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAGGTATTACTTAATAGTTCAAACTTTATATATTATTGGACTAATAATGTTCTCTTAGCGAGTTAGTTTCTTTCTGACTTTCCATTTTGATGTGCTTATTAAGAACATTTGTACATTGTTGAGTCGATTGATAATTTTCTGAGTGTGGAAATGTTATGTATTTTGAGTCCCATTGCATTATATCTAATGAAATGTCTACTAATGCAATTAGCTTAGTGGAACTGTAGAAGATTCACTGGTATATCCTCATTAAATTGCTGAAACAGAACAGTAATGCTTTGGTCTTCTGGTTGCCACTGGCTCCTTTGTTTTTTTTTTAGAATGCAAAAAACGATGTTGATAAATATACTCCTGATTGGCTAAAAGAAGATAGGGTAATTTTCTAAGATTCTCAATAGCATTTATTATTGCTGTGTTTGTAGCTCGACACAAGCACATCAGGTTTAATGTGTATGCTGTTTCTTCGTTTCTTAGTTTGTGGCATTATTACCAAATAAGTGCTTTTTTTTCTGAACAGGAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTGGTAGGGATTTTGGAAACTGCATCTTCTTTCTACATCAAGCAAACTGTTTCGTTCAATGTTCACAGTTCCTTCACTTCAATCTATTCTAGGTGCATTTGCTATAAGCTTAGTTGTTCAGACTCCTTATTTTAGCTTTCTTTGTAAGTTGGATTATGATGATCGTCGTGAAGTTACTTAGTCTTATTCACTTGATACTTGAATGGGATAGAATATAGAAATGTTTATGAGTTAATCTTTGAAGAAGAGTGTTAATCCTTGACCTTTAGAAGAAAGTATTTGTCTAAATTCCCTTTGTTCCTGAATTACAGAAGAGAAAACTTACGGCATTACTTAGAGGCTGGTTTTGAATGACAATTATTACCAAGTTCCTGTTTGAATATATGGTGGATAGGTAAGTTTTCCAATTTTATTTCAAGGACACAAAAATGATCATGATTGTGAATTGTGATCATAAAATCATGTCCCGAAAAGTTGTATAAATTCCTAAAGGCCACTAACTAAGGAGCTTCTGTAAGATTTTTATTTGAGCAACCCAGACATGAACTTAGTTTTGGTTGCTGAATCCCTTATTAAACTAAATTTTAGGTGTGAACTTCCTTGAAAATATGCTCCAAGATGCACTTAGACGAGATCTGCCAGGTGTTAACTGAATGAATATCATGCATAAATACAAACTGATACAATGAGGAGGAGTAAATGATTGGTTGTACACATTGCTTCACTGGTATATACTTTTGTTTTTATTCCTTCTCAGATAAGTAATAATTGTGTGGTTTGAAATTGAGGTTTGGTAAGGGTAGTAGGTTTTGTTTATTATTGGATCATTAATCTACTCTTTATGGCAATCAGTGAGAAAATTCTTGCAACAGGTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGTTTGACGAAGATCTCCGGAGAGGTATGTCTGTATCAGCTTCCTCATCTTTTCACCAAGAACAGTGGCATAACTTATGCATTCTCTGACTGTAGAACAACTTTCTCTTTTATGCAGAACGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAAGGGAGGGCGTAAAAAGTAAGTGCTATATTTTTTTCCTGAATATAAAGCCATCATAGTAATCACTGAATGGTCTTTTCGTAGGAAACTTGCTTTAGCCGCACCTTTCCTTATTTTTTTCAGTTAAATTTTTTCTTATAGGGAGCTTTTAGTTGTGTTATTCACCAACCTATTCTAGACAAGTTCCATTTTTTTTATATGGTATCAGGGCTTCTATGACGTCAGTAAAGACCAGTGTAACACCGGCCTACTGTTGGCCTGCTTCTGATGTCTACTTTGCCAAAGCTGCTTCTTCTTTGTATAAGTTTGATATTCCTTTTCTTTTTCCTATGACTATTATGTGTCTTTTTTGGTTATCCTTTTGGTGGCACCTAGAGGCAGAGGTGGGTCCAGGAGTTGAATTTTATGGGTTCTTTCGACGACTTCTGATACACGATAATACTAGTTCACAAAAAGTATAAATAGTTAGGGAATATTTTAAGACATGTGTAGGATTTCAGCAAAAGCTACTGGTTCCCAGAAACCTGCACCCAACATGTTGCATCCACCCTTGGTGGCACCATCTCTCTAGACCACTATTCCATCTATTCCTCCAACAATTTTCAAGTAAAAATATTCCTCCAAACTCCTTTACATATTTTATTAATTGTGCAAGTGTACGAGTATTTAGTTCCTTCTTTAAACATTGAATTCTGCTCATTGTCTTAGAGATCTTCTCTTCTTTCTTCATGGTAATAGAGTTTGTGCACTGAGGCCCTTGTTTGAGTTTTATTTTCAATTGTGCCGAGAGTTTTCTTCTCTTGTTTTTTCCTCTTACAAGATTTTGGATGTTAATCTCCCTTGAACATTGAATTTTTCGCCATTGTTTGATCACTTTTTCCAGTTACTCTTTAGCGGCCTATTCAAGCTAATATGAAATTCAACAGGCTATTGAAGTTATGTTTATGTATTAAAAGTATGTAAGGTTCTAAATGGTACTGATACAATTTGGAGTTTTGGGTATTTAGGAAAGTTTCCCTTTGTAAGGGAGGAATTGGATTTTTCATATTTACTAGTTTGAATTCCCACGGCACCAAAAAATGTTCGTCTTCTTACTCGCCTGAAGATTTACATAAATAATAAGGTATATCATGTTGCTTTGCCTTGTACGTTTGCCCCCAAATATTTTACCCTAGGTTGCTATTCTTTATCGGCAATGTAGTCGCCCTGTAATTTCTGAACAAACATTTTATCCTTTTCCTTTATGACCCACAAAAAGTTTCATCAAGTGTAAGCAGAACAACTTGCTTGATCCATGAGTTTGGTAAGAAGTGGCTTCCCTTGGAAACTGAACCAGCTTAATTTTCTAGTGGTGTTAGTTTTCCAAGTCCCAACGTTTTTTTTCGCCATTCTGTCGGCTTCTGTGGCCAAGGGAAGCCACTTGGGGGAATAGTTGTTATCTGTCGGTTTCTGTGGCCCAACTGATGAACGCTTGTGTGAATGTATATATCTGTCCTTACGTGGTATTATATTGAACTTGTTGTGAAGAGAATAATTTGTTCTGCAGAACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAGCAACACCA</genome_strand>
        <mrna_strand>AGCCCATATTAAGGCTTGAAACTCAAAATCAATAATTCATCGCTGGCTG--TAAAGAGCTCATAAAAATGTCATTCATCGAACAATTTCAAGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGAAGCTCTTCCAAATCATTTGCGGAGGAAGTATGCGTCGCTGCGTGATTTGGATAAAAGTCTGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCCATACCCAAAATGAACAGCGTTGTGACAAAGAAATAGAGGATATGATACACCGCATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGATGATGCATCGGATGAGCAAAAACATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGCTCATATTCAGCAGCTCGATCAGTACTTGAAAAAGTTTGACGAATATCTCCGGCGAG.............................................................................................AAAGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAACGGAGGGCGTAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAACAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367425" ref_strand="+" ref_description="SGN-E367425 [cLPT-7-P5]">
      <seq>cttgagttttttttttttttaaagattaaaaatatgttgagctaattctaatcgaagcccatattagggcttcaaactcaaaatcaataattcatcgctagctgtttaaaattctcagaaaaatggcattcatcgaagaatttcaagccaatatcgaagctcttccgaaccatttgcggaggaagtatgcgttgctgcgtgatttggataaaagtctgcaaggagtcccgacccaaaatgaacaacgctgtgacaaagaaatagaggatatgatacagcggattaaggctggtaatgtgacaccagactcttcactaatcaaattctctgacgatgcattggatgagcaaaagcatgcaatcaggattgctgatgaaaaagttgcactagcttctcaggcatatgatctggtagatgctcatattcagcagcttgatcagtacttgaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="63162" stop="60049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62862" g_stop="62729" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="150" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62728" i_stop="62035" i_length="694">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62034" g_stop="61963" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="222" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61962" i_stop="61449" i_length="514">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61448" g_stop="61261" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="410" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61260" i_stop="60392" i_length="869">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60391" g_stop="60349" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="453" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="16" polyA_stop="6"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E367425" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62862" e_stop="62729"/>
          <exon e_start="62034" e_stop="61963"/>
          <exon e_start="61448" e_stop="61261"/>
          <exon e_start="60391" e_stop="60349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAAAGTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCAGTAAGTTTCAATTTTTATTTTTTTTTGAATTTTTTTGAATCCGTTTCAGTTTCTGTTCTATAGATTCATGTAAAGATTGAATTTTTGTTTCGAATTCATAAGCCTGAAATTGAGAAAAAATAAATTCAGTACAATTCTAAGGATGCTGTGTACTTTATATGTGTTAAAATAGTTGTCATGTTTCGCTTCGCGAGGAAAAAGGGGATTTTTTGTTAATAGAAAAAAAAAGAAACAAGTGTTTATAGCTATAATGATATAAATAAATATACTCATCCGAGCTGGAATACGAGAATTTCCACCTTGTTGAAGATCTAGTGGTGCTACCCGAAGACTTAAATGAATAGCCAATGAGAATTTGTGTGTAGCTTTTGGTCAATATGACTAATTTTTTCGAGCTAAATTGGATTAGATTAAGTCGATTTTAGTGATTAAGTGAAATAGTTATTGTTTAGTGATGAGTTCATGGTAGAAACGATTAGCGATAAGATGCACGGTTTTTATTGTTCTGGTCCCTGAATTGAAGCGCTGCCTAAGTGACGTGGAACACTCGAGAGTGATTTTTAGTATTCGAGTGTGATTTTTAGTATTGTCTGTGTAAGAGTGATGTGTGATTAATTATATAGGAATTAGTTATTCCTCTGTGCAATCATGGTTTGATTTTTAACAAGTTGCTATGTTGATGATATTATCTCAGATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAGGTATTACTTAATAGTTCAAACTTTATATATTATTGGACTAATAATGTTCTCTTAGCGAGTTAGTTTCTTTCTGACTTTCCATTTTGATGTGCTTATTAAGAACATTTGTACATTGTTGAGTCGATTGATAATTTTCTGAGTGTGGAAATGTTATGTATTTTGAGTCCCATTGCATTATATCTAATGAAATGTCTACTAATGCAATTAGCTTAGTGGAACTGTAGAAGATTCACTGGTATATCCTCATTAAATTGCTGAAACAGAACAGTAATGCTTTGGTCTTCTGGTTGCCACTGGCTCCTTTGTTTTTTTTTTAGAATGCAAAAAACGATGTTGATAAATATACTCCTGATTGGCTAAAAGAAGATAGGGTAATTTTCTAAGATTCTCAATAGCATTTATTATTGCTGTGTTTGTAGCTCGACACAAGCACATCAGGTTTAATGTGTATGCTGTTTCTTCGTTTCTTAGTTTGTGGCATTATTACCAAATAAGTGCTTTTTTTTCTGAACAGGAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTGGTAGGGATTTTGGAAACTGCATCTTCTTTCTACATCAAGCAAACTGTTTCGTTCAATGTTCACAGTTCCTTCACTTCAATCTATTCTAGGTGCATTTGCTATAAGCTTAGTTGTTCAGACTCCTTATTTTAGCTTTCTTTGTAAGTTGGATTATGATGATCGTCGTGAAGTTACTTAGTCTTATTCACTTGATACTTGAATGGGATAGAATATAGAAATGTTTATGAGTTAATCTTTGAAGAAGAGTGTTAATCCTTGACCTTTAGAAGAAAGTATTTGTCTAAATTCCCTTTGTTCCTGAATTACAGAAGAGAAAACTTACGGCATTACTTAGAGGCTGGTTTTGAATGACAATTATTACCAAGTTCCTGTTTGAATATATGGTGGATAGGTAAGTTTTCCAATTTTATTTCAAGGACACAAAAATGATCATGATTGTGAATTGTGATCATAAAATCATGTCCCGAAAAGTTGTATAAATTCCTAAAGGCCACTAACTAAGGAGCTTCTGTAAGATTTTTATTTGAGCAACCCAGACATGAACTTAGTTTTGGTTGCTGAATCCCTTATTAAACTAAATTTTAGGTGTGAACTTCCTTGAAAATATGCTCCAAGATGCACTTAGACGAGATCTGCCAGGTGTTAACTGAATGAATATCATGCATAAATACAAACTGATACAATGAGGAGGAGTAAATGATTGGTTGTACACATTGCTTCACTGGTATATACTTTTGTTTTTATTCCTTCTCAGATAAGTAATAATTGTGTGGTTTGAAATTGAGGTTTGGTAAGGGTAGTAGGTTTTGTTTATTATTGGATCATTAATCTACTCTTTATGGCAATCAGTGAGAAAATTCTTGCAACAGGTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGT</genome_strand>
        <mrna_strand>TTTTAAAGATTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGCTAGCTGTTTAAAATTCTCAGAAAAATGGCATTCATCGAAGAATTTCAAGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCCCGACCCAAAATGAACAACGCTGTGACAAAGAAATAGAGGATATGATACAGCGGATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306868" ref_strand="+" ref_description="SGN-E306868 [cLEY-11-H20]">
      <seq>aaacatctcaatcaaaaatcccaaaagaaaaatgtttatcaaatttgcaattttatttgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctcctgaattaggtacacaaaaacttggaaaagcacaaggagtatatgtagcaagttcagcagacggaagtactcaaatgatggcatttacagctatgtttgaaggaggtgaatatggtgatagtctaaatttctttggagtttttagaattggaagtacaatgtcaagaatttcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="76576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75534" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76276" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="634" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E306868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75534"/>
          <exon e_start="76110" e_stop="76276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTA</genome_strand>
        <mrna_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306873" ref_strand="+" ref_description="SGN-E306873 [cLEY-11-J20]">
      <seq>aaacatcttaatcaaaaatcccaagggaaaaatgtttatcaaatttgcaattttatttgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctacggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctactgaattaagtacacaaaaacttggaaaagcacaaggagtatatgtagcaagttcagcagacggaagtactcaaatgatggcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="76487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75534" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76187" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="545" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E306873" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75534"/>
          <exon e_start="76110" e_stop="76187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTA</genome_strand>
        <mrna_strand>AAACATCTTAATCAAAAATCCCAAGGGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTACGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTACTGAATTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265213" ref_strand="+" ref_description="SGN-E265213 [cLEI-2-P7]">
      <seq>aaacatctcaatcaaaaatcccaaaagaaaaatgtttatcaaatttgcaattttatttgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctcctgaattaggtacacaaaaacttggaaaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="76433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75534" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76133" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="491" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E265213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75534"/>
          <exon e_start="76110" e_stop="76133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCAC</genome_strand>
        <mrna_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265880" ref_strand="+" ref_description="SGN-E265880 [cLEI-11-J7]">
      <seq>aaacatctcaatcaaaaatcccaaaagaaaaatgtttatcaaatttgcaattttatttgtatttgtaccatttgtagttgcaattgatcatgtagtacaagtacaccacaagaaccggttcttgaattgtacatgcacatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataatataatggacaaaatgtgaatactcatnaggccctgatggtctagggctagggttcggaaaatacggttatcgatgacttttgacctcgtctctgaattaggtcacaaaacttggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="75838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75534" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E265880" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG</genome_strand>
        <mrna_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGT-AGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCAC-ATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAAT-ATAATGGACAAAATGTGAATACTC-ATNAGGCCCTGATGGTCTAGGGCTAGGGTTC-GGAAAAT-ACGGTTATCGATGACTT-TTGACCTCGTCT-CTGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265214" ref_strand="+" ref_description="SGN-E265214 [cLEI-2-P9]">
      <seq>aaacatctcaatcaaaaatcccaaaagaaaaatgtttatcaaatgtgcaattttatttgtgggggtaccagttgggggtgcgagtggtcatgtaagtacaagtgcgccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaagcaatatttatagtggacaaataccatttgctacaccacttggttttgaaccttcagaaaaaggtgttgcaatttcaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="75795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75495" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E265214" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCA</genome_strand>
        <mrna_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATGTGCAATTTTATTTGTGGGGGTACCAGTTGGGGGTGCGAGTGGTCATGTAAGTACAAGTGCGCCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAAGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTTCAGAAAAAGGTGTTGCAATTTCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545540" ref_strand="+" ref_description="SGN-E545540 [TUS-68-H2]">
      <seq>atcaaaaatcccaaaagaaaaatgtttatcaaatttgcaattttatttgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctcctgaattaggtacacaaaaacttggaaaagcacaaggagtatatgtagcaagttcagcagacggaagtactcaaatgatggcatttacagctatgtttgaaggaggtgaatatggtgatagtctaaatttctttggagtttttagaattggaagtacaatgtcaagaatttcagtaacaggaggaactggtaaatttaaaaacgcgcgtggattcgcggaaatacgttcacttataccagctggtcaacatgttgctaatggtgctgagacattgttgaagattgttgttcatcttacttactgaattttcattaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74778" stop="76720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75078" g_stop="75534" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76420" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="768" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E545540" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75078" e_stop="75534"/>
          <exon e_start="76110" e_stop="76420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAGGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTG</genome_strand>
        <mrna_strand>ATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAAGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310914" ref_strand="+" ref_description="SGN-E310914 [cLEZ-17-D21]">
      <seq>tcaaaaattccaaaagaaaaatgtttatcaaatttgcaatggtatttgaatttgtaccatttgtagttgcaatagatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatatgctacaccacttggttttgaacctccagaagatggtgttgcaattacaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaggaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctcctgaattaggtacacaaaaacttggaaaagcacaaggagtatatgtagcaagttcagcagacggaagtactcaaatgatggcatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74779" stop="76489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75079" g_stop="75534" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76189" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="537" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E310914" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75079" e_stop="75534"/>
          <exon e_start="76110" e_stop="76189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACA-AAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACA</genome_strand>
        <mrna_strand>TCAAAAATTCCAAAAGAAAAATGTTTATCAAATTTGCAATGGTATTTGAATTTGTACCATTTGTAGTTGCAATAGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATATGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTACAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAGGAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462462" ref_strand="+" ref_description="SGN-E462462 [cPRO-11-D2]">
      <seq>aaaaaacatctcaatccaaaatcccacaaaaattctcaaaaaatgttcatcaaatttgcaattctatttgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccgattcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataaccggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttcaaccaccaaaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaacaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctanggctagggttcgggacgatcacagttatcgatgacttcttgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74765" stop="75819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75095" g_stop="75519" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="466" r_length="428" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E462462" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75095" e_stop="75519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGG--A-AATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCT</genome_strand>
        <mrna_strand>AAAAATGTTCATCAAATTTGCAATTCTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGATTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACCGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTCAACCACCAAAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAACAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTANGGCTAGGGTTCGGGACGATCACAGTTATCGATGACTTCTTGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545539" ref_strand="+" ref_description="SGN-E545539 [TUS-68-H2](-)">
      <seq>tgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctcctgaattaggtacacaaaaacttggaaaagcacaaggagtatatgtagcaagttcagcagacggaagtactcaaatgatggcatttacagctatgtttgaaggaggtgaatatggtgatagtctaaatttctttggagtttttagaattggaagtacaatgtcaagaatttcagtaacaggaggaactggtaaatttaaaaacgcgcgtggattcgcggaaatacgttcacttataccagctggtcaacatgttgctaatggtgctgagacattgttgaggattgttgttcatcttacttactgaattttcattaatttgatgtaattttgtgtgtgtgtatgtattctgttttgtttgatcaatatgaatattaattgtcttgtttcattgtggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74825" stop="76799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75125" g_stop="75534" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76506" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="807" r_length="397" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E545539" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75125" e_stop="75534"/>
          <exon e_start="76110" e_stop="76506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAGGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTGATGTAATTTTGTGTGTGTGTATGTATTCTGTTTTGTTTGATCAATATGAATATTAATTGTCTTGTTTCATTGTGGCAAAGTGAATA</genome_strand>
        <mrna_strand>TGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAGGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTGATGTAATTTTGTGTGTGTGTATGTATTCTGTTTTGTTTGATCAATATGAATATTAATTGTCTTGTTTCATTGTGGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306878" ref_strand="+" ref_description="SGN-E306878 [cLEY-11-L20]">
      <seq>tttgtaccatatgtagttgctattgatcatgtaagtacaagtgcaccacaaaaaccggttcttgaattgttcatgcacgatatcttgggaggaaataatccaacagctagaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctcctgaattaggtacacaaaaacttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74829" stop="76428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75129" g_stop="75534" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76128" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="425" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E306878" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75129" e_stop="75534"/>
          <exon e_start="76110" e_stop="76128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAA</genome_strand>
        <mrna_strand>TTTGTACCATATGTAGTTGCTATTGATCATGTAAGTACAAGTGCACCACAAAAACCGGTTCTTGAATTGTTCATGCACGATATCTTGGGAGGAAATAATCCAACAGCTAGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340731" ref_strand="+" ref_description="SGN-E340731 [cTOF-5-C13]">
      <seq>aaactatttcaagaatctgtttgtaaatcccaagaaaatgcaccaccaccaccaccctcctccaccaaccaccacccccaccaaaatctcaacaccctttatcattcttgccaccactatcttctcacttctccttattcttaccttctccttcacttnccctncaccccacccccaccccaaccaaccccaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="78824" stop="79620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79124" g_stop="79320" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E340731" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79124" e_stop="79320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATTTCAAGAATCTGTTTGTAAATCCCAAGAAAATGCACCACCACCACCACCCTCCTCCACCAACCACCACCCCCACCAAAATCTCAACACCCTTTATCATTCTTGCCACCACTATCTTCTCACTTCTCCTTATTCTTACCTTCTCCTTCACTTCCCCTCCACCCCACCCCCACCCCAACCAACCCCACCCTT</genome_strand>
        <mrna_strand>AAACTATTTCAAGAATCTGTTTGTAAATCCCAAGAAAATGCACCACCACCACCACCCTCCTCCACCAACCACCACCCCCACCAAAATCTCAACACCCTTTATCATTCTTGCCACCACTATCTTCTCACTTCTCCTTATTCTTACCTTCTCCTTCACTTNCCCTNCACCCCACCCCCACCCCAACCAACCCCACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705602" ref_strand="+" ref_description="SGN-E705602 [FA27CE05]">
      <seq>cacttgttactcaagatgatcttctacacattctgtcatatcttcccaaggatcttaattttgtcaaccacacaagctacatagggtggagagagtcaaggaagttgaaaccaatagttgttgatcctgggctctatcttgaagaagaagatgaagtattttatgcaactcagaagagggaactgcctgatgcttatcgattattttcagggtcttcatctagtatcttgagtcggaagtttatcgagttctgcatcttgggcacggataacctacccaggactctgctaatgtacttgtcaaattcaccatcctcgtcatctgtgtatttcccgaccattctgtgcaattcaaggaaattcaatagaacaacaatcaaccacaacttgcggtatgcttcatttaactcaagaaaagaggcccttccactcaataccagtaacttcaatgacctggtgatgagtggagcagtgtttgctgcaccattcgaggcaaacaatccgattcttgaccagatcgacagtgaacttctccaccacaagtacgatgaaccagtccctggcggatggtgtttaggtgaaaatgaaactgataaatgtactgtctggggagacgcagaagttctaagaccaggtccaggagcacagagactggaagaaagatttgtccagattttcagtaatggtacatttcgttctagtcgatgtgtctacgaatagagctccctcaagatgagaacatacagaagagacaaacactcgaaaaatgttttctatcgaaaaccacctctctacctcccaaggtagggttgaggtttgtgtatacactaccttccccagactcacacactgggtatgttgttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="79426" stop="83143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79726" g_stop="79743" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79744" i_stop="81059" i_length="1316">
            <donor d_prob="0.778" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81060" g_stop="81135" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="94" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81136" i_stop="81236" i_length="101">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81237" g_stop="81352" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="210" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81353" i_stop="82187" i_length="835">
            <donor d_prob="0.196" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82188" g_stop="82843" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="866" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E705602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79726" e_stop="79743"/>
          <exon e_start="81060" e_stop="81135"/>
          <exon e_start="81237" e_stop="81352"/>
          <exon e_start="82188" e_stop="82843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGTTACTCAAGATGGTATGAATTATGTGTAAAGATGTAATCTTTTTGATGTTTTTACTGGATTTAGTGTGTGTTGATTGCCCATTTGTTTGTCAAAACTCAATATGCATGATGGGTAATGTTGAAGATATGTTCTGTTTAGTGTAAAAATTGGGTCTTTTTTGTTTACAAGTATGTGTAAAGATTTAATCTATTGGTGGTTTTACTGGATTTAGTGTCTGCTGATTAGTCAAAACTCTATATGCATGTTGGGTAATGTTGAAGATATGCTCTGTTCAGTGTGAAAATTGAGTCTTTATTTGAGAAGTATGTACAAAGATTTGATCTTTTTGATGTTTTTACTGGATTTAGTGTGTTTATTGTCCAGTTGCTAGTCAAAAACTCTATATGCATATTGGATAATGTTCAAGATTTGCGTAATTGGGGAGATAAGATTAAGAATAAGGATATCCGGGACAAGGTGGGAAAAGGCTTCTATGGTGGACATGATGCGGGAAGCAAGGTCAAGATGGTTTGGATATGTGAAGAGGAGATGTGCACGTGCTCGATTAAGGAGGCGTGTGAGATTGGATATGGTGGGTATGAGGAGGGCTAGAGGAAGCTAAAGCAGTGTTGGGGAAGAGGTGATTAGATAGGACATGGTGTAACTTTAGCTTACGGAGGGCATGATCTTAGATAGGAGGGTATGGAGGTTGCGGATTAGGTAGAATGTTAGTAGGTTGTTGAGCTTTGACTCACTTCTCGACGGGTTTAGGCTCCGTGGGAGTCTGAGAGAACTGTGTTATTTGTAGTATTAGCCTTGTGCATGTATTTTCTTTTCAGTTAACACATTGTTTCACAAATATTACTATTTCTATTCTCGTAATATTTTGTAATGCTTTCCTTATTAATTGACATGTTTTCTTCACAATCATATTCCCTTTTTTCGGGAATACTTTCGTTTACTGTTTTTGAGTCGGGGTTCTTTTGGAAAAAACCTCTCTACCTCCATGTGGTAGTGGTAAGACTAAAATCGGAGTACACTCTACCCTTCCCAGACACCACTTGTGGGATAATACTAGGTATGTTTGTTGTTTGTTGTTTGTTGTTTTAAACTGTTTGTTATTGGATTTAGTGTGTGCTGATTATCCAGTTATTGGATGTATTAACCGTGCTGTTGAACATGAACAGATATATTTTCCTTTTCCATTACTGTTTATCACTTCGATTCAGGCATTGAAATTCTATCGAATGGATCTAATTATGCCATCGGACTCATTTCTCATTACAACACACTTTCACTTAGGTAATGACTGATGAGTAATCTGATGCTGTTTTCTGTTGATTTTCAGATCTTCTACACATTCTGTCATATCTTCCCAAGGATCTTAATTTTGTCAACCACACAAGCTACATAGGGTGGAGAGAGTATGGCCATATCCTTTTCGTATTATAAGTTTCTATATTTCTGTCTAAGCAAGTAATGTATGGTTTTAGATCTTATTATATGAGCGTTTTGGATGTTCCAGGTCAAGGAAGTTGAAACCAATAGTTGTTGATCCTGGGCTCTATCTTGAAGAAGAAGATGAAGTATTTTATGCAACTCAGAAGAGGGAACTGCCTGATGCTTATCGATTATTTTCAGGTCAGATGCTTGGTAGCCATATTTTTGGCATTATGAATGATGAAAGGATGAATATATTTGTGTTAAGTAATCCCCTTGAGTGTATGATTGAGAAAAATAGTTTTGATATGAAGTGGACAACCATAACATTGAGTCACAACCTTTTTTCGTGCTAAAAAAAATAGAATGAAAAATAAAGTACAGCATAGACATTTTAAAAGCAACTTTGAGTTGAAGTAGCCCAGTGCACAATGCATCCCAAGACTTATAAGGGTCCTCTGAAGAACCGCACACTAAGGGGTGTGATATAGACAGCTACCCTAATGCAAGCATTAATGACTGCTTCCAGGGCTCGAACATGTGACCTATACGACCACACGGAGACAACTTTACCGTTGCTCCAAATCTCCCCTTCTGGTATTCGATGAAGCAGATGACCAGAAAGTTTAAAGTAGTTAAGTGGGCAGAATTTTGTTTCAAGTGTTCTGTTAGAAAGCACAAGCATCTGAGTACGTCTAAATGTCCATCCTTCTCCGAATCTTAATGCAAAAAATGCTACAATAGATGGCCATGACTCTACACATTTTAGCTACATTGTACGCAGAAAATCGATTTCAGTTTAGAATCAAAATCTTTCAGTCTACAAAGCATCGCCCATGTTCCAAGTGTCTACTATTTTATCCTTCACCTTGAAAAGGCCCCAATGTTTTTTTGGAATTTAAAACTTTTTGGATATGCGACAACTAGGGCAAGGGTGTGTAGTAGTAGTAAAGCAACCATCCTATTGTGTTACTGGTTCGGTATGTGTTTAAATTATTGAAGTCTAATACTAACAAGCATGTCCTCTTGGCTACAGGGTCTTCATCTAGTATCTTGAGTCGGAAGTTTATCGAGTTCTGCATCTTGGGCACGGATAACCTACCCAGGACTCTGCTAATGTACTTGTCAAATTCACCATCCTCGTCATCTGTGTATTTCCCGACCATTCTGTGCAATTCAAGGAAATTCAATAGAACAACAATCAACCACAACTTGCGGTATGCTTCATTTAACTCAAGAAAAGAGGCCCTTCCACTCAATACCAGTAACTTCAATGACCTGGTGATGAGTGGAGCAGTGTTTGCTGCACCATTCGAGGCAAACAATCCGATTCTTGACCAGATCGACAGTGAACTTCTCCACCACAAGTACGATGAACCAGTCCCTGGCGGATGGTGTTTAGGTGAAAATGAAACTGATAAATGTACTGTCTGGGGAGACGCAGAAGTTCTAAGACCAGGTCCAGGAGCACAGAGACTGGAAGAAAGATTTGTCCAGATTTTCAGTAATGGTACATTTCGTTCTAGTCGATGTGTCTACGAATAGAGCTCCCTCAAGATGAGAACATACAGAAGAGACAAACACTCGAAAAATGTTTTCTATCGAAAACCACCTCTCTACCTCCCAAGGTAGGGTTGAGGTTTGTGTATACACTACCTTCCCCAGACTCACACACTGGGTATGTTGTTGACT</genome_strand>
        <mrna_strand>CACTTGTTACTCAAGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTACACATTCTGTCATATCTTCCCAAGGATCTTAATTTTGTCAACCACACAAGCTACATAGGGTGGAGAGA.....................................................................................................GTCAAGGAAGTTGAAACCAATAGTTGTTGATCCTGGGCTCTATCTTGAAGAAGAAGATGAAGTATTTTATGCAACTCAGAAGAGGGAACTGCCTGATGCTTATCGATTATTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTCATCTAGTATCTTGAGTCGGAAGTTTATCGAGTTCTGCATCTTGGGCACGGATAACCTACCCAGGACTCTGCTAATGTACTTGTCAAATTCACCATCCTCGTCATCTGTGTATTTCCCGACCATTCTGTGCAATTCAAGGAAATTCAATAGAACAACAATCAACCACAACTTGCGGTATGCTTCATTTAACTCAAGAAAAGAGGCCCTTCCACTCAATACCAGTAACTTCAATGACCTGGTGATGAGTGGAGCAGTGTTTGCTGCACCATTCGAGGCAAACAATCCGATTCTTGACCAGATCGACAGTGAACTTCTCCACCACAAGTACGATGAACCAGTCCCTGGCGGATGGTGTTTAGGTGAAAATGAAACTGATAAATGTACTGTCTGGGGAGACGCAGAAGTTCTAAGACCAGGTCCAGGAGCACAGAGACTGGAAGAAAGATTTGTCCAGATTTTCAGTAATGGTACATTTCGTTCTAGTCGATGTGTCTACGAATAGAGCTCCCTCAAGATGAGAACATACAGAAGAGACAAACACTCGAAAAATGTTTTCTATCGAAAACCACCTCTCTACCTCCCAAGGTAGGGTTGAGGTTTGTGTATACACTACCTTCCCCAGACTCACACACTGGGTATGTTGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734631" ref_strand="+" ref_description="SGN-E734631 [LB13AG03]">
      <seq>agcactcggtgcagctcagtctccatggggcgtggcaagtggtgccattgccggacacctggttgctacatctattgcaattctaggaggcgggtttcttgccaattacatttctgagaaactggttggctacttgggcggagttctattcttaatatttgctgttgctactttgtttggagtcttttaaccaagctctacagaaaagaagacaatgtcgataagttctaagacgcctatttagactggatagatacgcgagaaatgccaatggtagagggcaagaaactcctgatggtaccatggatcagtaacatgatttggcataaaacaatgacattcttgtactactgtagaagaagtagaagaaactatattagtggttcttaggcaacacaagagagctgtgtgtatgtgtaatactatggcccccatcagaaaatttttctgacagttgatgcttttccatgattgttgtacaagttttgtatatgtgaaagaatcaagatttctgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="84148" stop="82961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83981" g_stop="83963" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83962" i_stop="83844" i_length="119">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83843" g_stop="83739" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="124" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83738" i_stop="83653" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83652" g_stop="83264" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="513" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="528"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E734631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83981" e_stop="83963"/>
          <exon e_start="83843" e_stop="83739"/>
          <exon e_start="83652" e_stop="83264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTCGGTGCAGCTCAGGTACAGTTTCTATGAAATTCAATACTAACAATATATTTTCCGAGCTTGCCATAAAAACAAGTTCCAAAACCTCCAACTTCCATTTATTTCCTCACTGCCATACTGCCTCTATTTCGCAGTCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTGGTAAGCTAGCGCCTATTTTTTCCCCCGAATCTGCCCTGAACAATTATATTTTGAATTATAAGCATTTTATCTTGGTTCTACTACAGGTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</genome_strand>
        <mrna_strand>AGCACTCGGTGCAGCTCAG.......................................................................................................................TCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTG......................................................................................GTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734691" ref_strand="+" ref_description="SGN-E734691 [LB13BD03]">
      <seq>agcactcggtgcagctcagtctccatggggcgtggcaagtggtgccattgccggacacctggttgctacatctattgcaattctaggaggcgggtttcttgccaattacatttctgagaaactggttggctacttgggcggagttctattcttaatatttgctgttgctactttgtttggagtcttttaaccaagctctacagaaaagaagacaatgtcgataagttctaagacgcctatttagactggatagatacgcgagaaatgccaatggtagagggcaagaaactcctgatggtaccatggatcagtaacatgatttggcataaaacaatgacattcttgtactactgtagaagaagtagaagaaactatattagtggttcttaggcaacacaagagagctgtgtgtatgtgtaatactatggcccccatcagaaaatttttctgacagttgatgcttttccatgattgttgtacaagttttgtatatgtgaaagaatcaagatttctgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="84148" stop="82961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83981" g_stop="83963" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83962" i_stop="83844" i_length="119">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83843" g_stop="83739" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="124" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83738" i_stop="83653" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83652" g_stop="83264" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="513" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="528"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E734691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83981" e_stop="83963"/>
          <exon e_start="83843" e_stop="83739"/>
          <exon e_start="83652" e_stop="83264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTCGGTGCAGCTCAGGTACAGTTTCTATGAAATTCAATACTAACAATATATTTTCCGAGCTTGCCATAAAAACAAGTTCCAAAACCTCCAACTTCCATTTATTTCCTCACTGCCATACTGCCTCTATTTCGCAGTCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTGGTAAGCTAGCGCCTATTTTTTCCCCCGAATCTGCCCTGAACAATTATATTTTGAATTATAAGCATTTTATCTTGGTTCTACTACAGGTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</genome_strand>
        <mrna_strand>AGCACTCGGTGCAGCTCAG.......................................................................................................................TCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTG......................................................................................GTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693415" ref_strand="+" ref_description="SGN-E693415 [LH_Ea01E05](-)">
      <seq>aaggaaaaggcatcaaaacgggtcccaaatccccttgaaattttgtggaagttttttagcctcgtattttttgctgaatggggagatcgatcaatgcttgcaacaatagccctcggggcaggtcagtttccatggggggtggcaagtggtgccattgccggacacctggttgggacatttattgcaatattagggggggggttttttgccaattacatttttgggaaactggttgggtacttggggggagttttatttttaatatttggcgttggttctttgtttggggttttttaaccaagttttacagaaaagaagacaatgtcgataagttttaagacccctatttagactggatagatacgggggaaacgttaatggtagggggcaagaaactcctgatggttccatggatcagtaacatgatttggcataaaacaatgacatttttgttcttctgttgaattagtagaagaaaatattttagtggtttttaggcaacccaagagagctgtgtgtatgggtaatactatggcccccatcagaaaaattttttgacagttgatgcttttccaagattgttgttcaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="84725" stop="82989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84619" g_stop="84611" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84610" i_stop="84424" i_length="187">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.709" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84423" g_stop="84358" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="75" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84357" i_stop="84014" i_length="344">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84013" g_stop="83963" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="126" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83962" i_stop="83844" i_length="119">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83843" g_stop="83739" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="231" r_length="105" r_score="0.886"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83738" i_stop="83653" i_length="86">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.984" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83652" g_stop="83289" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="595" r_length="364" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E693415" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84619" e_stop="84611"/>
          <exon e_start="84423" e_stop="84358"/>
          <exon e_start="84013" e_stop="83963"/>
          <exon e_start="83843" e_stop="83739"/>
          <exon e_start="83652" e_stop="83289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAAAGGTGAAAAAGCTGCTGAATGCCACTCATAAATGCTGTTTTATTCTCTGAGATTTCTGCGCTTCCTAATGTCTTTAACACCAGAACATGTATTTATGAGGATGACTTCTATCTCTTTCCTGTCTCCATATTTGCATCACTTGCATCTTCAAAAATCTGGTTCTAACGATTTTATAGATGGATATTTCAGGCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCTGTAAGTATCTTCATCCGGTTGCAGCATTGTTTCTTTTGTACTTTCTTCTTCCAATAAAGAGCCAATGCAAACAGGGACAGATGTCGTGTAGATGGTAGATAGAGTGCAAGCTTCCATGACGCCAACATATATTTAATTACAAAAAATAGTTATTTGTATCATTTTTATAGTGTTCATGTAAGTTGTTTGAGTGTGACATGGAAGACTAGAACTGGTTTCTGTGGTTTTGCATTCACAACATCAAAGTCTAGAAAGTGTTATGTAACTATATCCAGTTGCTAAAGAACATCGAGGCCTGTTGTAGTTTTCAAGTTAGGAATCTTAATACTTTTTTTGCCTCCTAGGAATGGGGAGATCGATCAATGCTTGCAACAATAGCACTCGGTGCAGCTCAGGTACAGTTTCTATGAAATTCAATACTAACAATATATTTTCCGAGCTTGCCATAAAAACAAGTTCCAAAACCTCCAACTTCCATTTATTTCCTCACTGCCATACTGCCTCTATTTCGCAGTCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTGGTAAGCTAGCGCCTATTTTTTCCCCCGAATCTGCCCTGAACAATTATATTTTGAATTATAAGCATTTTATCTTGGTTCTACTACAGGTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTG</genome_strand>
        <mrna_strand>AAGGAAAAG...........................................................................................................................................................................................GCATCAAAACGGGTCCCAAATCCCCTTGAAATTTTGTGGAAGTTTTTTAGCCTCGTATTTTTTGCT........................................................................................................................................................................................................................................................................................................................................................GAATGGGGAGATCGATCAATGCTTGCAACAATAGCCCTCGGGGCAGGTCAG.......................................................................................................................TTTCCATGGGGGGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGGGACATTTATTGCAATATTAGGGGGGGGGTTTTTTGCCAATTACATTTTTGGGAAACTG......................................................................................GTTGGGTACTTGGGGGGAGTTTTATTTTTAATATTTGGCGTTGGTTCTTTGTTTGGGGTTTTTTAACCAAGTTTTACAGAAAAGAAGACAATGTCGATAAGTTTTAAGACCCCTATTTAGACTGGATAGATACGGGGGAAACGTTAATGGTAGGGGGCAAGAAACTCCTGATGGTTCCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTTTTGTTCTTCTGTTGAATTAGTAGAAGAAAATATTTTAGTGGTTTTTAGGCAACCCAAGAGAGCTGTGTGTATGGGTAATACTATGGCCCCCATCAGAAAAATTTTTTGACAGTTGATGCTTTTCCAAGATTGTTGTTCAAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704663" ref_strand="+" ref_description="SGN-E704663 [FA24DF11]">
      <seq>aaaatcaatacccacaaggagaatttcccctttttcagctggaatttcatctttattaagatgtagagcgctccctaagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcggtgattgccttcacgaaaggaggaccgtcatcactcattgcagcattttcgaaatcagggttcactgctgcattctcattgatatttgtttctgagattggagacaagacatttttcatcgctgccctcctggccatgcaatataagagaatactggtccttttgggatcaatgggtgctctttcacttatgacggtcttctctgtcataataggaaggatctttcattcagtacctgctcagtttcaaacaaccttgcctattggagaatacgcggctgttgccctcttgttcttttttggcctcaaatcaattanagatgcatgggaacttccaagcaatgatgttgagactggtgaaaagactagccaggaacttgatgaatttgcagaagctgaggagcttgtgaaggaaaaggcatcaaaacggctcacaaatccacttgaaattttgtggaagtcttttagcctcgtattttttgctgaagggggagatcgatcaatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="89840" stop="83689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89540" g_stop="89485" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="216" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86514" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="400" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86084" g_stop="86037" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="448" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86036" i_stop="85476" i_length="561">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85475" g_stop="85379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="545" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85378" i_stop="84775" i_length="604">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84774" g_stop="84611" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="709" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84610" i_stop="84424" i_length="187">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84423" g_stop="84358" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="775" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84357" i_stop="84014" i_length="344">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84013" g_stop="83989" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="800" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E704663" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89540" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86514"/>
          <exon e_start="86084" e_stop="86037"/>
          <exon e_start="85475" e_stop="85379"/>
          <exon e_start="84774" e_stop="84611"/>
          <exon e_start="84423" e_stop="84358"/>
          <exon e_start="84013" e_stop="83989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAGGTAAATGGAGAGATTGACACAATATGCTATACTTATTAGCTTTCGTGAACTCATGACTGTTTGTTGCCCTTTCATTTCTTTGGTTCTTAACCTTTTCATTCTCTTTGATACGGATAGTGCTCGTGGTCTCATCTCTGGCTGTTACATAAATACCTTGTAGGTGTAAAAGTGGTGTAACACATAATCATGGCTAAGCATTTATGCATCAATTTGCAAAAAATTCACTATTTGGTGTCTTTTATTGAAAAACTTTGATGCTTTCAGAATGAGCCTTATGACACTGTACATCATTCTACTGATACGAATGTATTCCCAGCTAATTGATTGAGTTATTTAATCTGGGATCTGCTTTTGTGCTATGCTAGTTTGCGATAATTCGTCTTATTCAAAATATCTAACTAATTCTTTCTTTAATATGCAATTCAACAGACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTGGTATGACCTTTAGCGTTCTGTCCCTTACTTCTCCTTTTCTATCTCTTTTGCATCAAATTATCTTAAGTTTTAAGAGAATAAAAGTGAATAATTGTGACTGAACTTAGGTATATCTTTAAAGCATTCTGCTTGAAGGTTTCATACCTTAAACTTTTTTCTTTTTTGTATCTTGTAGCATTCTTTCTTTATAGGCTATCAGTACTGCCTGAAATTTTGAGGATGGGGATCCTAGATTACGATCATTTGGTGATTGCAGGATTTGTTTGTAGAATTATTGATCAAACTGAAAAGGACGCAATCCATTTTTCATTATATAATTATTATTTAGGAGTTATAATCTTGCCTAATTATGTGAAAGCAAATGAAATATAAAAACTCATTGAAATACAAAAATGGGGCTTAATATAGAATGCACACACAAGTTTGTAGATTGAATATTGATATATTGTAAATGCACTTTGGTTTTTAGTGTTTCTTGCTACTGCTATACAGAAATGTAATATTGTGGTCACTTCTGTTCTGTTCAATTCTATATCTTACTTGAATTGCATCAATGACCAGGTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAAGTAAGTTCGACCCGAGGACTGTCATTTGTTTTTATTCTTGGTTTTTTTATTGGCTTCTTGGGATCTTTATATTTGGCACATTTTGCTTAGCATTTGCTTTTGTTGAAGCAAACTTACCCTAAATTGTGTTCATGTTTTCAGAAAGTAAATGATTAATATGCGCATTAGTTGGCAGAAAGCTTACTGATAAATTTTTTTTGGTACATTATGACTGGCTCATCAAGTATGCCGATCATTGGATATTAGAACTTAACATTCTCTTGGCAAGTTTGGTTATGCAGTGCTTCTTACTCTTGCTTGATAATGTCTCTTCCTGCGAAGTATAGACTGTAGTGGTATTTTATAGTGTTCATTTCTCCTAGTGTACCTTTTCTTGCACATGCACACTGGAAAACACACCCTTTTGGCCACCAGAACTACTCGAGTTTCACATAAAATCCAGAGCTTGCAATGACCTATACTTCATACGCGATAGCATTTCCCTCGAAGAATCTAAAGTTTCCCTCTTTCCAAACCATCAAAGATGCATGCTGCAATGGTATCCAAACTATCTTGAGCTTTGTTTGATATTTATTTTAAAATTCCCAATTGTTTTTCATTACAGCCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTAAAGATGCATGGGAACTTCCAAGCAATGATGTTGAGACTGGTGAAAAGAGTAGTCAGGAACTTGATGAATTTGCAGAAGCTGAGGAGCTTGTGAAGGAAAAGGTGAAAAAGCTGCTGAATGCCACTCATAAATGCTGTTTTATTCTCTGAGATTTCTGCGCTTCCTAATGTCTTTAACACCAGAACATGTATTTATGAGGATGACTTCTATCTCTTTCCTGTCTCCATATTTGCATCACTTGCATCTTCAAAAATCTGGTTCTAACGATTTTATAGATGGATATTTCAGGCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCTGTAAGTATCTTCATCCGGTTGCAGCATTGTTTCTTTTGTACTTTCTTCTTCCAATAAAGAGCCAATGCAAACAGGGACAGATGTCGTGTAGATGGTAGATAGAGTGCAAGCTTCCATGACGCCAACATATATTTAATTACAAAAAATAGTTATTTGTATCATTTTTATAGTGTTCATGTAAGTTGTTTGAGTGTGACATGGAAGACTAGAACTGGTTTCTGTGGTTTTGCATTCACAACATCAAAGTCTAGAAAGTGTTATGTAACTATATCCAGTTGCTAAAGAACATCGAGGCCTGTTGTAGTTTTCAAGTTAGGAATCTTAATACTTTTTTTGCCTCCTAGGAATGGGGAGATCGATCAATGCTTG</genome_strand>
        <mrna_strand>AAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTANAGATGCATGGGAACTTCCAAGCAATGATGTTGAGACTGGTGAAAAGACTAGCCAGGAACTTGATGAATTTGCAGAAGCTGAGGAGCTTGTGAAGGAAAAG...........................................................................................................................................................................................GCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCT........................................................................................................................................................................................................................................................................................................................................................GAAGGGGGAGATCGATCAATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282260" ref_strand="+" ref_description="SGN-E282260 [cLES-4-I22]">
      <seq>taagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcggtgattgccttcacgaaaggaggaccgtcatcactcattgcagcattttcgaaatcagggttcactgctgcattctcattgatatttgtttctgagattggagacaagacatttttcatcgctgccctcctggccatgcaatataagagaatactggtccttttgggatcaatgggtgctctttcacttatgacggtcttctctgtcataataggaaggatctttcattcagtacctgctcagtttcaaacaaccttgcctattggagaatacgcggctgttgccctcttgttcttttttggcctcaaatcaattaaagatgcatgggaacttccaagcaatgatgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="88022" stop="84377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87722" g_stop="87582" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86697" g_stop="86514" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="325" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86084" g_stop="86037" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="373" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86036" i_stop="85476" i_length="561">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85475" g_stop="85379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="470" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85378" i_stop="84775" i_length="604">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84774" g_stop="84677" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="568" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E282260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87722" e_stop="87582"/>
          <exon e_start="86697" e_stop="86514"/>
          <exon e_start="86084" e_stop="86037"/>
          <exon e_start="85475" e_stop="85379"/>
          <exon e_start="84774" e_stop="84677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAGGTAAATGGAGAGATTGACACAATATGCTATACTTATTAGCTTTCGTGAACTCATGACTGTTTGTTGCCCTTTCATTTCTTTGGTTCTTAACCTTTTCATTCTCTTTGATACGGATAGTGCTCGTGGTCTCATCTCTGGCTGTTACATAAATACCTTGTAGGTGTAAAAGTGGTGTAACACATAATCATGGCTAAGCATTTATGCATCAATTTGCAAAAAATTCACTATTTGGTGTCTTTTATTGAAAAACTTTGATGCTTTCAGAATGAGCCTTATGACACTGTACATCATTCTACTGATACGAATGTATTCCCAGCTAATTGATTGAGTTATTTAATCTGGGATCTGCTTTTGTGCTATGCTAGTTTGCGATAATTCGTCTTATTCAAAATATCTAACTAATTCTTTCTTTAATATGCAATTCAACAGACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTGGTATGACCTTTAGCGTTCTGTCCCTTACTTCTCCTTTTCTATCTCTTTTGCATCAAATTATCTTAAGTTTTAAGAGAATAAAAGTGAATAATTGTGACTGAACTTAGGTATATCTTTAAAGCATTCTGCTTGAAGGTTTCATACCTTAAACTTTTTTCTTTTTTGTATCTTGTAGCATTCTTTCTTTATAGGCTATCAGTACTGCCTGAAATTTTGAGGATGGGGATCCTAGATTACGATCATTTGGTGATTGCAGGATTTGTTTGTAGAATTATTGATCAAACTGAAAAGGACGCAATCCATTTTTCATTATATAATTATTATTTAGGAGTTATAATCTTGCCTAATTATGTGAAAGCAAATGAAATATAAAAACTCATTGAAATACAAAAATGGGGCTTAATATAGAATGCACACACAAGTTTGTAGATTGAATATTGATATATTGTAAATGCACTTTGGTTTTTAGTGTTTCTTGCTACTGCTATACAGAAATGTAATATTGTGGTCACTTCTGTTCTGTTCAATTCTATATCTTACTTGAATTGCATCAATGACCAGGTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAAGTAAGTTCGACCCGAGGACTGTCATTTGTTTTTATTCTTGGTTTTTTTATTGGCTTCTTGGGATCTTTATATTTGGCACATTTTGCTTAGCATTTGCTTTTGTTGAAGCAAACTTACCCTAAATTGTGTTCATGTTTTCAGAAAGTAAATGATTAATATGCGCATTAGTTGGCAGAAAGCTTACTGATAAATTTTTTTTGGTACATTATGACTGGCTCATCAAGTATGCCGATCATTGGATATTAGAACTTAACATTCTCTTGGCAAGTTTGGTTATGCAGTGCTTCTTACTCTTGCTTGATAATGTCTCTTCCTGCGAAGTATAGACTGTAGTGGTATTTTATAGTGTTCATTTCTCCTAGTGTACCTTTTCTTGCACATGCACACTGGAAAACACACCCTTTTGGCCACCAGAACTACTCGAGTTTCACATAAAATCCAGAGCTTGCAATGACCTATACTTCATACGCGATAGCATTTCCCTCGAAGAATCTAAAGTTTCCCTCTTTCCAAACCATCAAAGATGCATGCTGCAATGGTATCCAAACTATCTTGAGCTTTGTTTGATATTTATTTTAAAATTCCCAATTGTTTTTCATTACAGCCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTAAAGATGCATGGGAACTTCCAAGCAATGATGTTGAG</genome_strand>
        <mrna_strand>TAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTAAAGATGCATGGGAACTTCCAAGCAATGATGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689575" ref_strand="+" ref_description="SGN-E689575 [LH_Ea01E05]">
      <seq>tctctctaatcagttcttcagcttcttgattacaactaacttttctgagaaagtgtagcaaatattttttattaaattttttttgttcataaatgactttatagttaaaaaaaaagcaatcttttttagtttttagtatatagaattaagaaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagttatggtgggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaaaatcaatacccacaaggagaattccccatttttcaggtggaatttcatctttattaagatgtcgagcgctccctaagttgcagcaaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcactgattgccttcacgaaaggaggaccgtcatcactcattgcagcattttcgaaatcagggttcactgctgcattctcgttgatatttgtttctgagattggagacaagacatttttcatcgctgccctcctggccatgcaatataagagaatactggtccttttgggatcaatgggtgctctttcacttatgacagtcttctctgtcataataggaaagatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90098" stop="85107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89799" g_stop="89485" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="473" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86514" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="657" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86084" g_stop="86037" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="705" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86036" i_stop="85476" i_length="561">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85475" g_stop="85407" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="774" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E689575" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89799" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86514"/>
          <exon e_start="86084" e_stop="86037"/>
          <exon e_start="85475" e_stop="85407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAAC-TTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAG-TAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAGGTAAATGGAGAGATTGACACAATATGCTATACTTATTAGCTTTCGTGAACTCATGACTGTTTGTTGCCCTTTCATTTCTTTGGTTCTTAACCTTTTCATTCTCTTTGATACGGATAGTGCTCGTGGTCTCATCTCTGGCTGTTACATAAATACCTTGTAGGTGTAAAAGTGGTGTAACACATAATCATGGCTAAGCATTTATGCATCAATTTGCAAAAAATTCACTATTTGGTGTCTTTTATTGAAAAACTTTGATGCTTTCAGAATGAGCCTTATGACACTGTACATCATTCTACTGATACGAATGTATTCCCAGCTAATTGATTGAGTTATTTAATCTGGGATCTGCTTTTGTGCTATGCTAGTTTGCGATAATTCGTCTTATTCAAAATATCTAACTAATTCTTTCTTTAATATGCAATTCAACAGACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTGGTATGACCTTTAGCGTTCTGTCCCTTACTTCTCCTTTTCTATCTCTTTTGCATCAAATTATCTTAAGTTTTAAGAGAATAAAAGTGAATAATTGTGACTGAACTTAGGTATATCTTTAAAGCATTCTGCTTGAAGGTTTCATACCTTAAACTTTTTTCTTTTTTGTATCTTGTAGCATTCTTTCTTTATAGGCTATCAGTACTGCCTGAAATTTTGAGGATGGGGATCCTAGATTACGATCATTTGGTGATTGCAGGATTTGTTTGTAGAATTATTGATCAAACTGAAAAGGACGCAATCCATTTTTCATTATATAATTATTATTTAGGAGTTATAATCTTGCCTAATTATGTGAAAGCAAATGAAATATAAAAACTCATTGAAATACAAAAATGGGGCTTAATATAGAATGCACACACAAGTTTGTAGATTGAATATTGATATATTGTAAATGCACTTTGGTTTTTAGTGTTTCTTGCTACTGCTATACAGAAATGTAATATTGTGGTCACTTCTGTTCTGTTCAATTCTATATCTTACTTGAATTGCATCAATGACCAGGTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTT</genome_strand>
        <mrna_strand>TCTCTCTAATCAGTTCTTCAGCTTCTTGATTACAACTAACTTTTCTGAGAAAGTGTAGCAAAT---ATTTTTTATTA-AATTTTTTTTGTTCATAAATGACTTTATAGTTAAAAAAAAAGCAATCTTTTTTAGTTTTTAGTATATAGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTCCCCATTTTTCAGGTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTCGAGCGCTCCCTAAGTTGCAGCAAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCACTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCGTTGATATTTGTTTCTGAGATTGGAGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACAGTCTTCTCTGTCATAATAGGAAAGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348207" ref_strand="+" ref_description="SGN-E348207 [cTOF-27-E13]">
      <seq>gaactccacactctctaatcagttcttcagcttcttggttacaactaacttcctgaaaaagtgtagagaatccaaatattttttattaaattttttgttcacaaatgactttatagtaaaaaaaaagctatcttttatagtttttagtatattgaattaagaaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagttatggtgggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaaaatcaatacccacaaggagaatttcccctttttcagctggaatttcatctttattaagatgtagagcgctccctaagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcggtgattgccttcacgaaaggaggaccgtcatcactcattgcagcattttcgaaatcagggttcactgctgcattctcattgatatttgtttctgagattggagacnagacatttttcatcgctgcccttctggcccatgcatataagagaatactggtccttttgggatcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90108" stop="85157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89808" g_stop="89485" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="484" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86514" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="668" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86084" g_stop="86037" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="716" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86036" i_stop="85476" i_length="561">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85475" g_stop="85457" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="735" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E348207" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89808" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86514"/>
          <exon e_start="86084" e_stop="86037"/>
          <exon e_start="85475" e_stop="85457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAGGTAAATGGAGAGATTGACACAATATGCTATACTTATTAGCTTTCGTGAACTCATGACTGTTTGTTGCCCTTTCATTTCTTTGGTTCTTAACCTTTTCATTCTCTTTGATACGGATAGTGCTCGTGGTCTCATCTCTGGCTGTTACATAAATACCTTGTAGGTGTAAAAGTGGTGTAACACATAATCATGGCTAAGCATTTATGCATCAATTTGCAAAAAATTCACTATTTGGTGTCTTTTATTGAAAAACTTTGATGCTTTCAGAATGAGCCTTATGACACTGTACATCATTCTACTGATACGAATGTATTCCCAGCTAATTGATTGAGTTATTTAATCTGGGATCTGCTTTTGTGCTATGCTAGTTTGCGATAATTCGTCTTATTCAAAATATCTAACTAATTCTTTCTTTAATATGCAATTCAACAGACATTTTTCATCGCTGCCCTCCTGG-CCATGCAATATAAGAGAATACTGGTATGACCTTTAGCGTTCTGTCCCTTACTTCTCCTTTTCTATCTCTTTTGCATCAAATTATCTTAAGTTTTAAGAGAATAAAAGTGAATAATTGTGACTGAACTTAGGTATATCTTTAAAGCATTCTGCTTGAAGGTTTCATACCTTAAACTTTTTTCTTTTTTGTATCTTGTAGCATTCTTTCTTTATAGGCTATCAGTACTGCCTGAAATTTTGAGGATGGGGATCCTAGATTACGATCATTTGGTGATTGCAGGATTTGTTTGTAGAATTATTGATCAAACTGAAAAGGACGCAATCCATTTTTCATTATATAATTATTATTTAGGAGTTATAATCTTGCCTAATTATGTGAAAGCAAATGAAATATAAAAACTCATTGAAATACAAAAATGGGGCTTAATATAGAATGCACACACAAGTTTGTAGATTGAATATTGATATATTGTAAATGCACTTTGGTTTTTAGTGTTTCTTGCTACTGCTATACAGAAATGTAATATTGTGGTCACTTCTGTTCTGTTCAATTCTATATCTTACTTGAATTGCATCAATGACCAGGTCCTTTTGGGATCAATGG</genome_strand>
        <mrna_strand>GAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACNAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTTCATCGCTGCCCTTCTGGCCCATGC-ATATAAGAGAATACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTGGGATCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312735" ref_strand="+" ref_description="SGN-E312735 [cTOA-8-E10]">
      <seq>agaatccaaatattttttattaaattttttgttcacaaatgactttatagtaaaaaaaaagctatcttttatagtttttagtatattgaattaagaaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagttatggtgggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaaaatcaatacccacaaggagaatttcccctttttcagctggaatttcatctttattaagatgtagagcgctccctaagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcggtgattgccttcacgaaaggaggaccgtcatcactcattgcagcattttcgaaatcagggttcactgctgcattctcattgatatttgtttctgagattggagacaagacatttttcatcgctgccctcctggccatgcaatataagagaatactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90042" stop="85735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89742" g_stop="89485" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="418" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86514" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="602" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86084" g_stop="86035" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="652" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E312735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89742" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86514"/>
          <exon e_start="86084" e_stop="86035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAGGTAAATGGAGAGATTGACACAATATGCTATACTTATTAGCTTTCGTGAACTCATGACTGTTTGTTGCCCTTTCATTTCTTTGGTTCTTAACCTTTTCATTCTCTTTGATACGGATAGTGCTCGTGGTCTCATCTCTGGCTGTTACATAAATACCTTGTAGGTGTAAAAGTGGTGTAACACATAATCATGGCTAAGCATTTATGCATCAATTTGCAAAAAATTCACTATTTGGTGTCTTTTATTGAAAAACTTTGATGCTTTCAGAATGAGCCTTATGACACTGTACATCATTCTACTGATACGAATGTATTCCCAGCTAATTGATTGAGTTATTTAATCTGGGATCTGCTTTTGTGCTATGCTAGTTTGCGATAATTCGTCTTATTCAAAATATCTAACTAATTCTTTCTTTAATATGCAATTCAACAGACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTGGT</genome_strand>
        <mrna_strand>AGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265198" ref_strand="+" ref_description="SGN-E265198 [cLEI-2-J1]">
      <seq>aaagctatcttttatagtttttagtatattgaattaagaaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagttatggtgggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaaaatcaatacccacaaggagaatttcccctttttcagctggaatttcatctttattaagatgtagagcgctccctaagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcggtgattgccttcacgaaaggaggaccgtcatcactcattgcagcattttcgaaatcagggttcactgctgcattctcattgatatttgtttctgagattggagacaagacatttttcatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="89985" stop="86214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89685" g_stop="89485" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="361" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86514" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="545" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E265198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89685" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG</genome_strand>
        <mrna_strand>AAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469788" ref_strand="+" ref_description="SGN-E469788 [cSTB-14-A24]">
      <seq>ccacactccctaatcagttcttcagcttctgggttacaactacttttctgaaaaagtgtagagaatcccaatattttttattaaatttttttgttcacaaatgactttatagtaaaaaaaaaaagcaatcttttttagttatagtacatagaattaaagaaaaaatgcaggggttggcgcttcaaacatctaattctatagcatcaagttattgggggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaccatcaatacccacaaggagaatttcccatttttcaggaggaatttcatctttattaagatgtacagcgctccctaagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgttggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctaccgatggttcatcgaaaattgaggcacttcctagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcactgattgccttcacgaaaggaggaccgtcatcactcattgcagcatttgcgaaatcaggtttcactgctgcattctcgttgatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90103" stop="86234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89803" g_stop="89485" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="481" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86534" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="645" r_length="164" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E469788" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89803" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAAT-TTTTTGTTCACAAATGACTTTATAGT--AAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTG</genome_strand>
        <mrna_strand>CCACACTCCCTAATCAGTTCTTCAGCTTCTGGGTTACAACTACTTTTCTGAAAAAGTGTAGAGAATCCCAATATTTTTTATTAAATTTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAAAGCAATCTTTTTTAG-TTATAGTACATAGAATTAAAGAAAAAATGCAGGGGTTGGCGCTTCAAACATCTAATTCTATAGCATCAAGTTATTGGGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAACCATCAATACCCACAAGGAGAATTTCCCATTTTTCAGGAGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTACAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTTGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACCGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCTAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCACTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTGCGAAATCAGGTTTCACTGCTGCATTCTCGTTGATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459229" ref_strand="+" ref_description="SGN-E459229 [cPRO-27-A6]">
      <seq>gcaaaatcccaagaactccacactccctaatcagttcttcagcttctgggttacaactacttttctgaaaaagtgtagagaatcccaatattttttattaaatttttttgttcacaaatgactttatagtaaaaaaaaaaaagcaatcttttttagttatagtacatagaattaaagaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagttattgggggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaccatcaatacccacaaggagaatttcccatttttcaggaggaatttcatctttattaagatgtacagcgctccctaagttgcagcgaaggcctagcagaattataccctatgcatctaatgttggtgttggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctaccgatggttcatcgaaaattgaggcacttcctagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcactgattgccttcacgaaaggaggaccgtcatcactcattgcagcatttgcgaaatcaggtttcactgctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90120" stop="86248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89820" g_stop="89485" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="499" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86548" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="649" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E459229" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89820" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCCCAAGAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAA-TTTTTTGTTCACAAATGACTTTATAGT---AAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATT</genome_strand>
        <mrna_strand>GCAAAATCCCAAGAACTCCACACTCCCTAATCAGTTCTTCAGCTTCTGGGTTACAACTACTTTTCTGAAAAAGTGTAGAGAATCCCAATATTTTTTATTAAATTTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAAAAGCAATCTTTTTTAG-TTATAGTACATAGAATTAAAGAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATTGGGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAACCATCAATACCCACAAGGAGAATTTCCCATTTTTCAGGAGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTACAGCGCTCCCTAAGTTGCAGCGAAGGCCTAGCAGAATTATACCCTATGCATCTAATGTTGGTGTTGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACCGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCTAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCACTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTGCGAAATCAGGTTTCACTGCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459239" ref_strand="+" ref_description="SGN-E459239 [cPRO-27-C6]">
      <seq>gcaaaatcccaagaactccacactccctaatcagttcttcagcttctgggttacaactacttttctgaaaaagtgtagagaatcccaatattttttattaaatttttttgttcacaaatgactttatagtaaaaaaaaaaaagcaatcttttttagttatagtacatagaattaaagaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagttattgggggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaccatcaatacccacaaggagaatttcccatttttcaggaggaatttcatctttattaagatgtacagcgctccctaagttgcagcgaaggcctagcagaattataccctatgcatctaatgttggtgttggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctaccgatggttcatcgaaaattgaggcacttcctagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcactgattgccttcacgaaagggaggacgtcatcactcattgcagcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90120" stop="86274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89820" g_stop="89485" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="499" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86573" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="624" r_length="125" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E459239" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89820" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCCCAAGAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAA-TTTTTTGTTCACAAATGACTTTATAGT---AAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTT</genome_strand>
        <mrna_strand>GCAAAATCCCAAGAACTCCACACTCCCTAATCAGTTCTTCAGCTTCTGGGTTACAACTACTTTTCTGAAAAAGTGTAGAGAATCCCAATATTTTTTATTAAATTTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAAAAGCAATCTTTTTTAG-TTATAGTACATAGAATTAAAGAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATTGGGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAACCATCAATACCCACAAGGAGAATTTCCCATTTTTCAGGAGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTACAGCGCTCCCTAAGTTGCAGCGAAGGCCTAGCAGAATTATACCCTATGCATCTAATGTTGGTGTTGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACCGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCTAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCACTGATTGCCTTCACGAAAGGGAGGACGTCATCACTCATTGCAGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242652" ref_strand="+" ref_description="SGN-E242652 [cLED-30-O10]">
      <seq>ttggattcattgcctagcaaaaaatcaatacccacaaggagaatgtcccctttttcagctggaatttcatctttattaagatgtagagcgctccctaagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="89860" stop="86353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89560" g_stop="89485" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="0.98"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="236" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86653" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="281" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E242652" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89560" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCT</genome_strand>
        <mrna_strand>TTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATGTCCCCTTTTTCAGCTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325759" ref_strand="+" ref_description="SGN-E325759 [cTOC-15-L12]">
      <seq>cactctctaatcagttcttcagcttcttggttacaactaacttcctgaaaaagtgtagagaatccaaatattttttattaaattttttgttcacaaatgactttataggaaaaaaaaagctatcttttatagtttttagtatattgaattaagaaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagctatggtgggaagaagaagttttcatttttgaatgttttggattcattgcctagcaaaaaatcaatacccacaaggagaatttcgcctttttcagctggaatttcatctttattaagatgtagagcgctcactaagttgcagcgaaagcatagcagaattataccctatgcatctaatggtggtgtcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90100" stop="87364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89800" g_stop="89485" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="0.98"/>
            <acceptor a_prob="0.896" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="394" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E325759" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89800" e_stop="89485"/>
          <exon e_start="87741" e_stop="87664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGAT</genome_strand>
        <mrna_strand>CACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGGAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGCTATGGTGGGAAGAAGAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCGCCTTTTTCAGCTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAGAGCGCTCACTAAGTTGCAGCGAAAGCATAGCAGAATTATACCCTATGCATCTAATGGTGGTGTCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722954" ref_strand="+" ref_description="SGN-E722954 [FC18DE01]">
      <seq>aatcggccgaattgctctctaacaaaatcaaaccaaacccttattccatttttttctctttcaatttctcccttttgctctctgtgtgtgaaaaaaacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtaaaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagtttcaagaacgttaagcagcgtgagccattgctttctttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagccgataagaccccacaatggcgggcaggccctctggggccaaaaacactgtgtaatgcttgtggtgtgcgctataagtcaggcaggctgttaccagagtatcgcccggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98794" stop="101271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99096" g_stop="99364" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="282" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100971" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="808" r_length="526" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E722954" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99096" e_stop="99364"/>
          <exon e_start="100446" e_stop="100971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAAACAAAATCAAACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTA</genome_strand>
        <mrna_strand>CTCTCT-AACAAAATCAAACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAAAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289226" ref_strand="+" ref_description="SGN-E289226 [cLES-18-I23]">
      <seq>caaaccaaacccttattccattattttctctttcaatttctgccttttgctctctgcgtgtgaaaaaaacaatgaaaatggaagatttggacccaactgcatgtttcatggcggatgatgaccttatcaacttctctttgggagatgaaactgttgaagaatatgatgaagaatcaactattactagcaaagacccactttcttattcttcttggtcttcaacaaaccctcttgttagccctcttacccaccctgagtgtgtagaggaagagctggaatggctgtcaaacaaagatgcatttgcagcgatagagttaggcattctttccgagaacccgggtatggtctttgatcaccataacccggtttcagtgctggagaataatagcagcactagtcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98811" stop="100895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99111" g_stop="99364" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100595" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="404" r_length="150" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E289226" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99111" e_stop="99364"/>
          <exon e_start="100446" e_stop="100595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGC</genome_strand>
        <mrna_strand>CAAACCAAACCCTTATTCCATTATTTTCTCTTTCAATTTCTGCCTTTTGCTCTCTGCGTGTGAAAAAAACAATGAAAATGGAAGATTTGGACCCAACTGCATGTTTCATGGCGGATGATGACCTTATCAACTTCTCTTTGGGAGATGAAACTGTTGAAGAATATGATGAAGAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTGGTCTTCAACAAACCCTCTTGTTAGCCCTCTTACCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGCTGGAATGGCTGTCAAACAAAGATGCATTTGCAGCGATAGAGTTAGGCATTCTTTCCGAGAACCCGGGTATGGTCTTTGATCACCATAACCCGGTTTCAGTGCTGGAGAATAATAGCAGCACTAGTCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729269" ref_strand="+" ref_description="SGN-E729269 [LA20CB07]">
      <seq>acctaacccttattcatttttttctctttcaatttctcccttttgctctctgtgtgtgaaaaaaacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagtttcaagaacgttaagcagcgtgagccattgctttctttaccaatgaatncagctaagagtgctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98814" stop="101130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99114" g_stop="99364" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100830" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="635" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E729269" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99114" e_stop="99364"/>
          <exon e_start="100446" e_stop="100830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTA</genome_strand>
        <mrna_strand>ACCTAACCCTTATT-CATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATNCAGCTAAGAGTGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725919" ref_strand="+" ref_description="SGN-E725919 [LA08DA03]">
      <seq>cttacccttattgcatacctttatgtgtcaattgctcccttttgctctcctgatgtgtgaaaaaaacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgnttcgtgcacggagcaagagaagacgtataagactgaaaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98835" stop="101063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99116" g_stop="99364" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100763" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="570" r_length="319" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E725919" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99116" e_stop="99364"/>
          <exon e_start="100446" e_stop="100763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCT-CTG-TGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTG-TTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGT</genome_strand>
        <mrna_strand>CTTACCCTTATTGCATACCTTTATGTGTCAATTGCTCCCTTTTGCTCTCCTGATGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGNTTCGTGCACGGAGCAAGAGAAGACGTATAAGACTGAAAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342245" ref_strand="+" ref_description="SGN-E342245 [cTOF-8-G15]">
      <seq>aaacccttattccatttttttctctttcaatttctcccttttgctctctgtgtgtgaaaaaaacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagtttcaagaacgttaagcagcgtgagccattgctgtctttaccaatgaattcagctaagagtgctgctagcattgggaggaggggccaacactgtggagccgataagaccccacaatggcnggcaggccctctggggccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98817" stop="101204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99117" g_stop="99364" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100904" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="707" r_length="459" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E342245" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99117" e_stop="99364"/>
          <exon e_start="100446" e_stop="100904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAA</genome_strand>
        <mrna_strand>AAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTGTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGGGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCNGGCAGGCCCTCTGGGGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370911" ref_strand="+" ref_description="SGN-E370911 [TUS-27-F21]">
      <seq>aaacccttattccatttttttctctttcaatttctcccttttgctctctgtgtgtgaaaaaaacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagtttcaagaacgttaagcagcgtgagccattgctttctttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagccgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98817" stop="101167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99117" g_stop="99364" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100867" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="670" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E370911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99117" e_stop="99364"/>
          <exon e_start="100446" e_stop="100867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAA</genome_strand>
        <mrna_strand>AAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591895" ref_strand="+" ref_description="SGN-E591895 [45617]">
      <seq>ccttattccatttttcctctttcaatttctcccttttgctctctctgtgtgtgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaatatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctgacatgccaagcgagcattgtctgcaggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattgctttcgttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaccccacaatggcgggcaggccctctggggccgaaaacactgtgtaatgcttgtggggtgcgctataagtcaggcaggctgttgccagagtatcgcccggctaatagccctttctttctcggctgctgcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98821" stop="101299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99121" g_stop="99364" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100999" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="799" r_length="555" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E591895" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99121" e_stop="99364"/>
          <exon e_start="100446" e_stop="100999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTG-AAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCC-TACTTTCTCGGCTGCTGCGCA</genome_strand>
        <mrna_strand>CCTTATTCCA-TTTTTCCTCTTTCAATTTCTCCCTTTTGCTCTCTCTGTGTGTGAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAATATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTGACATGCCAAGCGAGCATTGTCTGCAGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCGAAAACACTGTGTAATGCTTGTGGGGTGCGCTATAAGTCAGGCAGGCTGTTGCCAGAGTATCGCCCGGCTAATAGCCCTTTCTTTCTCGGCTGCTGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591852" ref_strand="+" ref_description="SGN-E591852 [45573]">
      <seq>ccttattccatttttcctctttcaatttctcccttttgctctctctgtgtgtgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaatatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctgacatgccaagcgagcattgtctgcaggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattgctttcgttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaccccacaatggcgggcaggccctctggggccgaaaacactgtgtaatgcttgtggggtgcgctataagtcaggccaggctgtttgccagagtatcgccccggctaatagcccttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98821" stop="101284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99121" g_stop="99364" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100984" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="786" r_length="542" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E591852" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99121" e_stop="99364"/>
          <exon e_start="100446" e_stop="100984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTG-AAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGG-CAGGCTG-TTACCAGAGTATCG-CCCGGCTAATAGCCCTACTTT</genome_strand>
        <mrna_strand>CCTTATTCCA-TTTTTCCTCTTTCAATTTCTCCCTTTTGCTCTCTCTGTGTGTGAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAATATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTGACATGCCAAGCGAGCATTGTCTGCAGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCGAAAACACTGTGTAATGCTTGTGGGGTGCGCTATAAGTCAGGCCAGGCTGTTTGCCAGAGTATCGCCCCGGCTAATAGCCCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416936" ref_strand="+" ref_description="SGN-E416936 [STM-24-G15]">
      <seq>ccttattccatttttcctctttcaatttctcccttttgctctctctgtgtgtgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaatatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcaccagccacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggggtttgttgacatgccaagcgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattgctttcgttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaccccacaatggcgggcaggcccctctgggccgaaacactgtgtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98821" stop="101218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99121" g_stop="99364" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100918" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="717" r_length="473" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E416936" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99121" e_stop="99364"/>
          <exon e_start="100446" e_stop="100918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTG-AAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGT-GGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGC</genome_strand>
        <mrna_strand>CCTTATTCCA-TTTTTCCTCTTTCAATTTCTCCCTTTTGCTCTCTCTGTGTGTGAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAATATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACCAGCCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGGTTTGTTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGCAGGCCC-CTCTGGGCCGAAACACTGTGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461820" ref_strand="+" ref_description="SGN-E461820 [cPRO-9-N19]">
      <seq>ccttattccatttttcctctttcaatttctcccttctgctctctgtgtgtgaaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcaccagccacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctaacatgccaagcgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcatgagccattgctttcgttaccaatgaattcagctaagagtgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98821" stop="101129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99121" g_stop="99364" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100829" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="627" r_length="384" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E461820" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99121" e_stop="99364"/>
          <exon e_start="100446" e_stop="100829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCT</genome_strand>
        <mrna_strand>CCTTATTCCA-TTTTTCCTCTTTCAATTTCTCCCTTCTGCTCTCTGTGTGTGAAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACCAGCCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTAACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCATGAGCCATTGCTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439869" ref_strand="+" ref_description="SGN-E439869 [cSTA-13-L8]">
      <seq>ccttattccatttttcctctttcaatttctcccttttgctctctctgtgtgtgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaatatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcaccagccacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtanaagacggagaggtgggtttgttgacatgccaagcgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattgctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98821" stop="101098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99121" g_stop="99364" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100799" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="598" r_length="354" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E439869" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99121" e_stop="99364"/>
          <exon e_start="100446" e_stop="100799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTG-AAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCT</genome_strand>
        <mrna_strand>CCTTATTCCA-TTTTTCCTCTTTCAATTTCTCCCTTTTGCTCTCTCTGTGTGTGAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAATATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACCAGCCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTANAAGACGGAGAGGTGGGTTTGTTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623984" ref_strand="+" ref_description="SGN-E623984 [89129]">
      <seq>catttttcctctttcaatttctcccttttgctctctctgtgtgtgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctgacatgccaagtgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattactttcgttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaccccacaatggcgggcaggccctctggggccgaaaacactgtgtaatgccttgtggggtgcgctataagtcaggcaggctgttgcagagtatcgccggctaatagcccttcttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98829" stop="101286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99129" g_stop="99364" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100984" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="774" r_length="538" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E623984" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99129" e_stop="99364"/>
          <exon e_start="100446" e_stop="100984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTG-AAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATG-CTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTT</genome_strand>
        <mrna_strand>CATTT-TTCCTCTTTCAATTTCTCCCTTTTGCTCTCTCTGTGTGTGAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTGACATGCCAAGTGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTACTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCGAAAACACTGTGTAATGCCTTGTGGGGTGCGCTATAAGTCAGGCAGGCTGTT-GCAGAGTATCG-CCGGCTAATAGCCCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270180" ref_strand="+" ref_description="SGN-E270180 [cLEM-1-G11]">
      <seq>tttttttctctttcaatttctcccttgggctctctgtgtgtgaaaaaaacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98831" stop="100908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99131" g_stop="99364" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100608" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="397" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E270180" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99131" e_stop="99364"/>
          <exon e_start="100446" e_stop="100608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTG</genome_strand>
        <mrna_strand>TTTTTTTCTCTTTCAATTTCTCCCTTGGGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412432" ref_strand="+" ref_description="SGN-E412432 [STM-16-C22]">
      <seq>cttttgctctctctgtgtgtgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctgacatgccaagtgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattactttcgttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaccccacaatggcgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98860" stop="101185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99154" g_stop="99364" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100885" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="652" r_length="440" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E412432" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99154" e_stop="99364"/>
          <exon e_start="100446" e_stop="100885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTCTCTGTGTGTG-AAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGC</genome_strand>
        <mrna_strand>CTTTTGCTCTCTCTGTGTGTGAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTGACATGCCAAGTGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTACTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470609" ref_strand="+" ref_description="SGN-E470609 [cSTB-19-H2]">
      <seq>cttttgctctctctgtgtgtgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggcggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98860" stop="100950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99154" g_stop="99364" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100650" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="417" r_length="205" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E470609" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99154" e_stop="99364"/>
          <exon e_start="100446" e_stop="100650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTCTCTGTGTGTG-AAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAA</genome_strand>
        <mrna_strand>CTTTTGCTCTCTCTGTGTGTGAAAAAAAAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGCGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605227" ref_strand="+" ref_description="SGN-E605227 [21142]">
      <seq>gtgtgaaaaaaaatgaaaatggaggattggacccaactgcatgttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaatatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctgacatgccaagcgagcattgtctgcaggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattgctttcgttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaccccacaatggcgggcaggccctctgggggcgaaaacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98868" stop="101210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99168" g_stop="99364" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100910" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="658" r_length="465" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E605227" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99168" e_stop="99364"/>
          <exon e_start="100446" e_stop="100910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTG</genome_strand>
        <mrna_strand>GTGTG-AAAAAA-AATGAAAATGGAGGA-TTGGACCCAACTGCATG-TTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAATATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTGACATGCCAAGCGAGCATTGTCTGCAGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGGCGAAAACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575906" ref_strand="+" ref_description="SGN-E575906 [35604]">
      <seq>tgaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctgacatgccaagtgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcgtgagccattactttcgttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaacccacaatggcgggcaggccctctggggccgaaaacactgtgtaatgcttgtggggtgcgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98871" stop="101235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99171" g_stop="99364" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100935" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="683" r_length="490" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E575906" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99171" e_stop="99364"/>
          <exon e_start="100446" e_stop="100935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATA</genome_strand>
        <mrna_strand>TGAAAAAAA-AATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTGACATGCCAAGTGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTACTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGAACCCACAATGGCGGGCAGGCCCTCTGGGGCCGAAAACACTGTGTAATGCTTGTGGGGTGCGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577433" ref_strand="+" ref_description="SGN-E577433 [35677]">
      <seq>gaaaaaaaaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgaatgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttccgagaacccgggtatggtatttgatcaccatagcccggtttcggtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctgacatgccaagtgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcgtgagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98872" stop="101090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99172" g_stop="99364" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100790" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="537" r_length="345" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E577433" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99172" e_stop="99364"/>
          <exon e_start="100446" e_stop="100790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCA</genome_strand>
        <mrna_strand>GAAAAAAA-AATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCCGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCGGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTGACATGCCAAGTGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCGTGAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307255" ref_strand="+" ref_description="SGN-E307255 [cLEY-12-K15]">
      <seq>aacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98878" stop="101065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99178" g_stop="99364" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100765" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="507" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E307255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99178" e_stop="99364"/>
          <exon e_start="100446" e_stop="100765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTT</genome_strand>
        <mrna_strand>AACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422157" ref_strand="+" ref_description="SGN-E422157 [STM-40-C13]">
      <seq>tgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagaattggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcaccagccacagcagtggcaatggtgttgttaatggaaatgcttatacgagctgctgtgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtgggtttgctaacatgccaagcgagcattgtctgccggtgacacaaccaagtttcaagaacgttaagcagcatgagccattgctttcgttaccaatgaattcagctaagagtgctgctagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98883" stop="101134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99183" g_stop="99364" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100834" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="571" r_length="389" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E422157" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99183" e_stop="99364"/>
          <exon e_start="100446" e_stop="100834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCAT</genome_strand>
        <mrna_strand>TGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAATTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACCAGCCACAGCAGTGGCAATGGTGTTGTTAATGGAAATGCTTATACGAGCTGCTGTGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGGTTTGCTAACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCAAGTTTCAAGAACGTTAAGCAGCATGAGCCATTGCTTTCGTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329043" ref_strand="+" ref_description="SGN-E329043 [cTOC-24-K6]">
      <seq>aagagaaaaaaatggaataagggtttggtttgattttgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagtttcaagaacgttaagcagcgtgagccattgctttctttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98912" stop="101163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99212" g_stop="99364" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="189" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100863" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="607" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E329043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99212" e_stop="99364"/>
          <exon e_start="100446" e_stop="100863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCG</genome_strand>
        <mrna_strand>TGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306634" ref_strand="+" ref_description="SGN-E306634 [cLEY-19-I18]">
      <seq>ttgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactatcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtataagacggataggtggattttgctgacatgccaagcgagcattgtttgccggtgacacaaccgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98926" stop="101064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99225" g_stop="99364" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="100764" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="460" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E306634" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99225" e_stop="99364"/>
          <exon e_start="100446" e_stop="100764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGA-TTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTT</genome_strand>
        <mrna_strand>TTGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTATCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTATAAGACGGATAGGTGGATTTTGCTGACATGCCAAGCGAGCATTGTTTGCCGGTGACACAACCGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608704" ref_strand="+" ref_description="SGN-E608704 [24697]">
      <seq>ctatcttaaaagcatataataaaacaaactaagttcaaaattcctagtggattttgatggaaaatcaaagcaaatcactgaccatcaagaccattacaacaaaaacctatagtctatgctaactatagtaaatgaagaaaaatatccgaaaagacgctgcagatgactcactactgttctactctatatccacaagcttcatgaatcaacattcctcccactccaatcttatgctttctcatctccaaaaccttccggtgggagttggaatgcgcagcagccgagaaagaagggctattagccgggcgatactctggcaacagcctgcctgacttatagcgcaccccacaagcattacacagtgttttcggccccagagggcctgcccgccattgtggggtcttatcagctccacagtgttggcacctcctcccaatgctagcagcactcttagctgaattcattggtaacgaaagcaatggctcacgctgcttaacgttcttgaaacttggttgtgtcacctgcagacaatgctcgcttggcatgtcagcaaacccacctctccgtcttctacgtcttctcttgctccgtgcacgaacaggctaattaaccggaacttttaagttgacacagcagctcgtataagcatgtccattaacaaaacattgccactgctgtgactagtgctgtactattctcagcacgaaaacgggctatggtgatcgaatacataccgggtctcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="101568" stop="100218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101268" g_stop="100518" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E608704" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101268" e_stop="100518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTTAAAAGCATATAATAAAACAAACT-AGTTCAAAATTCCTAGTGGATTTTGATGGAAAACCAAAGCAAATCACCGACCATCAAGACCATTACAACAAAAACCTATAGTCTATGCTAACTATAGTAAATGAAGAAAAATATCTGAAAAGACGCTGCAGATGACTCACTACTGTCCTACCCTATATCCACAAGCTTCATGAATCAACATTCCTCCCACACCAATCTTATGCTTTCTCATCTCCAAAACCTTCCGGTGGGAGTTTGAATGCGCAGCAGCCGAGAAAGTAGGGCTATTAGCCGGGCGATACTCTGGTAACAGCCTGCCTGACTTATAGCGCACACCACAAGCATTACACAGTGTTTTTGGCCCCAGAGGGCCTGCCCGCCATTGTGGGGTCTTATCGGCTCCACAGTGTTGGCACCTCCTCCCAATGCTAGCAGCACTCTTAGCTGAATTCATTGGTAAAGAAAGCAATGGCTCACGCTGCTTAACGTTCTTGAAACTCGGTTGTGTCACCGGCAGACAATGCTCGCTTGGCATGTCAGCAAATCCACCTCTCCGTCTTCTACGTCTTCTCTTGCTCCGTGCACGAACAGGGTAATTAACCGGAACTTTTAAGTTGACGCAGCAGCTCGTATAAGCATTTCCACTAACAACACCATTGCCACTGCTGTGACTAGTGCTGCTACTATTCTCCAGCACTGAAACCGGGCTATGGTGATCAAATACCATACCCGGGTTCTCCGA</genome_strand>
        <mrna_strand>CTATCTTAAAAGCATATAATAAAACAAACTAAGTTCAAAATTCCTAGTGGATTTTGATGGAAAATCAAAGCAAATCACTGACCATCAAGACCATTACAACAAAAACCTATAGTCTATGCTAACTATAGTAAATGAAGAAAAATATCCGAAAAGACGCTGCAGATGACTCACTACTGTTCTACTCTATATCCACAAGCTTCATGAATCAACATTCCTCCCACTCCAATCTTATGCTTTCTCATCTCCAAAACCTTCCGGTGGGAGTTGGAATGCGCAGCAGCCGAGAAAGAAGGGCTATTAGCCGGGCGATACTCTGGCAACAGCCTGCCTGACTTATAGCGCACCCCACAAGCATTACACAGTGTTTTCGGCCCCAGAGGGCCTGCCCGCCATTGTGGGGTCTTATCAGCTCCACAGTGTTGGCACCTCCTCCCAATGCTAGCAGCACTCTTAGCTGAATTCATTGGTAACGAAAGCAATGGCTCACGCTGCTTAACGTTCTTGAAACTTGGTTGTGTCACCTGCAGACAATGCTCGCTTGGCATGTCAGCAAACCCACCTCTCCGTCTTCTACGTCTTCTCTTGCTCCGTGCACGAACAGGCTAATTAACCGGAACTTTTAAGTTGACACAGCAGCTCGTATAAGCATGTCCATTAACAA-AACATTGCCACTGCTGTGACTAGTGCTG-TACTATTCT-CAGCAC-GAAAACGGGCTATGGTGATCGAATA-CATA-CCGGG-TCTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370910" ref_strand="+" ref_description="SGN-E370910 [TUS-27-F21](-)">
      <seq>gcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagtttcaagaacgttaagcagcgtgagccattgctttctttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagccgataagaccccacaatggcgggcaggccctctggggccaaaaacactgtgtaatgcttgtggtgtgcgctataagtcaggcaggctgttaccagagtatcgcccggctaatagccctactttctcggctgctgcgcattcaaactcccaccggaaggttttggagatgagaaagcataagattggtgtgggaggaatgttgattcatgaagcttgtggatatagggtaggacagtagtgagtcatctgcagcgtcttttcagatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcggtgatttgctttggttttccatcaaaatccactaggaattttgaactagtttgttttattatatgcttttaagatagaaatccagaaagaagagctcctaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100300" stop="101598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100600" g_stop="101302" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E370910" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100600" e_stop="101302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTG</genome_strand>
        <mrna_strand>GCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435371" ref_strand="+" ref_description="SGN-E435371 [STM-61-M22]">
      <seq>cacctttattggaaaacaccaaatctttttccggagctcttctttctggatttctatcttaaaagcatataataaaacaaactaagttcaaaattcctagtggattttgatggaaaaccaaagcaaatcactgaccatcaagaccattacaacaaaaacctatagtctatgctaactatagtaaatgaagaaaaatatccgaaaagacgctgcagatgactcactactgttctactctatatccacaagcttcatgaatcaacattcctcccactccaatcttatgctttctcatctccaaaaccttccggtgggagttggaatgcgcagcagccgagaaagaagggctattagccgggcgatactctggcaacagcctgcctgacttatagcgcaccccacaagcattacacagtgttttcggccccagagggcctgcccgccattgtggggtcttatcagctccacagtgttggcacctcctcccaatgctagcagcactcttagctgaattcattggtaacgaaagcaatggctcatgctgcttaacgttcttgaaacttggttgtgtcaccggcagacaatgctcgcttggcatgttagcaaacccacctctccgtcttctacgtcttctcttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="101610" stop="100382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101302" g_stop="100682" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="641" r_length="622" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E435371" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101302" e_stop="100682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTTGTTAGGAGCTCTTCTTTCTGGATTTCTATCTTAAAAGCATATAATAAAACAAACT-AGTTCAAAATTCCTAGTGGATTTTGATGGAAAACCAAAGCAAATCACCGACCATCAAGACCATTACAACAAAAACCTATAGTCTATGCTAACTATAGTAAATGAAGAAAAATATCTGAAAAGACGCTGCAGATGACTCACTACTGTCCTACCCTATATCCACAAGCTTCATGAATCAACATTCCTCCCACACCAATCTTATGCTTTCTCATCTCCAAAACCTTCCGGTGGGAGTTTGAATGCGCAGCAGCCGAGAAAGTAGGGCTATTAGCCGGGCGATACTCTGGTAACAGCCTGCCTGACTTATAGCGCACACCACAAGCATTACACAGTGTTTTTGGCCCCAGAGGGCCTGCCCGCCATTGTGGGGTCTTATCGGCTCCACAGTGTTGGCACCTCCTCCCAATGCTAGCAGCACTCTTAGCTGAATTCATTGGTAAAGAAAGCAATGGCTCACGCTGCTTAACGTTCTTGAAACTCGGTTGTGTCACCGGCAGACAATGCTCGCTTGGCATGTCAGCAAATCCACCTCTCCGTCTTCTACGTCTTCTCTTGCTC</genome_strand>
        <mrna_strand>CAAATCTTTTTCCGGAGCTCTTCTTTCTGGATTTCTATCTTAAAAGCATATAATAAAACAAACTAAGTTCAAAATTCCTAGTGGATTTTGATGGAAAACCAAAGCAAATCACTGACCATCAAGACCATTACAACAAAAACCTATAGTCTATGCTAACTATAGTAAATGAAGAAAAATATCCGAAAAGACGCTGCAGATGACTCACTACTGTTCTACTCTATATCCACAAGCTTCATGAATCAACATTCCTCCCACTCCAATCTTATGCTTTCTCATCTCCAAAACCTTCCGGTGGGAGTTGGAATGCGCAGCAGCCGAGAAAGAAGGGCTATTAGCCGGGCGATACTCTGGCAACAGCCTGCCTGACTTATAGCGCACCCCACAAGCATTACACAGTGTTTTCGGCCCCAGAGGGCCTGCCCGCCATTGTGGGGTCTTATCAGCTCCACAGTGTTGGCACCTCCTCCCAATGCTAGCAGCACTCTTAGCTGAATTCATTGGTAACGAAAGCAATGGCTCATGCTGCTTAACGTTCTTGAAACTTGGTTGTGTCACCGGCAGACAATGCTCGCTTGGCATGTTAGCAAACCCACCTCTCCGTCTTCTACGTCTTCTCTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592671" ref_strand="+" ref_description="SGN-E592671 [35885]">
      <seq>attcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagctgataagaccccacaatggcgggcaggccctctggggccgaaaacactgtgtaatgcttgtggggtgcgctataagtcaggcaggctgttgccagagtatcgcccggctaatagcccttctttctcggctgctgcgcattccaactcccaccggaaggttttggagatgagaaagcataagattggagtgggaggaatgttgattcatgaagcttgtggatatagagtagaacagtagtgagtcatctgcagcgtcttttcagatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcagtgatttgctttggttttccatcaaaatccactaggaattttgaacttagtttgttttattatatgcttttaagatagaaatccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100510" stop="101584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100810" g_stop="101292" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E592671" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100810" e_stop="101292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAAC-TAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAA</genome_strand>
        <mrna_strand>ATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCGAAAACACTGTGTAATGCTTGTGGGGTGCGCTATAAGTCAGGCAGGCTGTTGCCAGAGTATCGCCCGGCTAATAGCCCTTCTTTCTCGGCTGCTGCGCATTCCAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGAGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGAGTAGAACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCAGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610021" ref_strand="+" ref_description="SGN-E610021 [57173]">
      <seq>caacactgtggagctgataagaccccacaatggcgggcaggccctctggggccgaaaacactgtgtaatgcttgtggggtgcgctataagtcaggcaggctgttgccagagtatcgcccggctaatagcccttctttctcggctgctgcgcattccaactcccaccggaaggttttggagatgagaaagcataagattggagtgggaggaatgttgattcatgaagcttgtggatatagagtagaacagtagtgagtcatctgcagcgtcttttcggatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcagtgatttgctttgattttccatcaaaatccactaggaattttgaacttagtttgttttattatatgcttttaagatagaaatccagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100548" stop="101584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100848" g_stop="101286" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E610021" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100848" e_stop="101286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAAC-TAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGC</genome_strand>
        <mrna_strand>CAACACTGTGGAGCTGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCGAAAACACTGTGTAATGCTTGTGGGGTGCGCTATAAGTCAGGCAGGCTGTTGCCAGAGTATCGCCCGGCTAATAGCCCTTCTTTCTCGGCTGCTGCGCATTCCAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGAGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGAGTAGAACAGTAGTGAGTCATCTGCAGCGTCTTTTCGGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCAGTGATTTGCTTTGATTTTCCATCAAAATCCACTAGGAATTTTGAACTTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422158" ref_strand="+" ref_description="SGN-E422158 [STM-40-C13]">
      <seq>tttttttttttcattcaaccatgagaagagaactctgcatataagttccatcttctttcttttattcaaacaaatagacaatacattgcagaatgcttcattacataaaggggtaaaaccaaagtaagatgatcaaacccctcaaacaattagaacactgtaaccttcaaacttccatctcgagcgaacaccaccttctgcaactgttaaaactgcttagcaagtacatttccagcaactgccacaaacatcattctcaagattcaaaaatgtatcatttccaatccatgcaaatgactaaggtaagtaggaaggattaaaaaacaaccaaatctttgttaggagctcttctttctggatttctatcttaaaagcatataataaaacaaactaagttcaaaattcctagtggattttgatggaaaaccaaagcaaatcactgaccatcaagaccattacaacaaaaacctatagtctatgctaactatagtaaatgaagaaaaatatccgaaaagacgctgcagatgactcactactgttctactctatatccacaagcttcatgaatcaacattcctcccactccaatcttatgctttctcatctccaaaaccttccggtgggagttggaatgcgcagcagccgagaaagaagggctattagccgggcgatactctggcaacagcctgcctgacttatagcgcaccccacaagcattacacagtgttttcggccccagagggcctgcccgccattgtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="101931" stop="100570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101633" g_stop="100870" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E422158" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101633" e_stop="100870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAATCATCATTCAACAATGAGAAGAGAACTCTGCATATAAGTTCCATCTTCTTTCTTTTATTCAAACAAATAGACAATACATTGCAGAACGCTTCGTTACATAAAGGGGTAAAAACCAAAGCAAGATGATCAAACCCCTGAAACAATTAGAACACTGTAAACTTCAATACCTCCATCTCGAGCGAACACCACCTTCTGCAACTGTTAAAACTGCTTAGCAAGTACATTCCCAGCAACTGCCACAAACATCATTCTCAAGATTCAAAAATGTATCATTTCCAATCCATGCAAATGACAGAGGTAAGAAGGAAGGATTAAAAAAACAACCAAATCTTTGTTAGGAGCTCTTCTTTCTGGATTTCTATCTTAAAAGCATATAATAAAACAAACT-AGTTCAAAATTCCTAGTGGATTTTGATGGAAAACCAAAGCAAATCACCGACCATCAAGACCATTACAACAAAAACCTATAGTCTATGCTAACTATAGTAAATGAAGAAAAATATCTGAAAAGACGCTGCAGATGACTCACTACTGTCCTACCCTATATCCACAAGCTTCATGAATCAACATTCCTCCCACACCAATCTTATGCTTTCTCATCTCCAAAACCTTCCGGTGGGAGTTTGAATGCGCAGCAGCCGAGAAAGTAGGGCTATTAGCCGGGCGATACTCTGGTAACAGCCTGCCTGACTTATAGCGCACACCACAAGCATTACACAGTGTTTTTGGCCCCAGAGGGCCTGCCCGCCATTGTGGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTCATTCAACCATGAGAAGAGAACTCTGCATATAAGTTCCATCTTCTTTCTTTTATTCAAACAAATAGACAATACATTGCAGAATGCTTCATTACATAAAGGGGT-AAAACCAAAGTAAGATGATCAAACCCCTCAAACAATTAGAACACTGTAACCTTCAA-ACTTCCATCTCGAGCGAACACCACCTTCTGCAACTGTTAAAACTGCTTAGCAAGTACATTTCCAGCAACTGCCACAAACATCATTCTCAAGATTCAAAAATGTATCATTTCCAATCCATGCAAATGACTAAGGTAAGTAGGAAGGATT-AAAAAACAACCAAATCTTTGTTAGGAGCTCTTCTTTCTGGATTTCTATCTTAAAAGCATATAATAAAACAAACTAAGTTCAAAATTCCTAGTGGATTTTGATGGAAAACCAAAGCAAATCACTGACCATCAAGACCATTACAACAAAAACCTATAGTCTATGCTAACTATAGTAAATGAAGAAAAATATCCGAAAAGACGCTGCAGATGACTCACTACTGTTCTACTCTATATCCACAAGCTTCATGAATCAACATTCCTCCCACTCCAATCTTATGCTTTCTCATCTCCAAAACCTTCCGGTGGGAGTTGGAATGCGCAGCAGCCGAGAAAGAAGGGCTATTAGCCGGGCGATACTCTGGCAACAGCCTGCCTGACTTATAGCGCACCCCACAAGCATTACACAGTGTTTTCGGCCCCAGAGGGCCTGCCCGCCATTGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284989" ref_strand="+" ref_description="SGN-E284989 [cLER-19-M21]">
      <seq>cacaatggcgggcaggccctctggggccaataacactgtgtaatgcttgtggtgtgcgctataagtcaggcaggctgttaccagagtatcgcccggctaatagccctactttctcggctgctgcgcattcaaactcccaccggaaggttttggagatgagaaagcataagattggtgtgggaggaatgttgattcatgaagcttgtggatatagggtaggacagtagtgagtcatctgcagcgtcttttcagatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcggtgatttgctttggttttccatcaaaatccactaggaattttgaactagtttgttttattatatgcttttaagatagaaatccagaaagaagagctcctaacaaagatttgggtgtctttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100573" stop="101615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100873" g_stop="101302" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="451"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E284989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100873" e_stop="101302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTG</genome_strand>
        <mrna_strand>CACAATGGCGGGCAGGCCCTCTGGGGCCAATAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606561" ref_strand="+" ref_description="SGN-E606561 [22506]">
      <seq>gtgcgctataagtcaggcaggctgttgccagagtatcgcccggctaatagcccttctttctcggctgctgcgcattccaactcccaccggaaggttttggagatgagaaagcataagattggagtgggaggaatgttgattcatgaagcttgtggatatagagtagaacagtagtgagtcatctgcagcgtcttttcggatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcagtgatttgctttgattttccatcaaaatccactaggaattttgaacttagtttgttttattatatgcttttaagatagaaatccagaaagaagagctcctaacaaagatttggttgttttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100626" stop="101615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100926" g_stop="101302" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="399"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E606561" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100926" e_stop="101302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAAC-TAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTG</genome_strand>
        <mrna_strand>GTGCGCTATAAGTCAGGCAGGCTGTTGCCAGAGTATCGCCCGGCTAATAGCCCTTCTTTCTCGGCTGCTGCGCATTCCAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGAGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGAGTAGAACAGTAGTGAGTCATCTGCAGCGTCTTTTCGGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCAGTGATTTGCTTTGATTTTCCATCAAAATCCACTAGGAATTTTGAACTTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368156" ref_strand="+" ref_description="SGN-E368156 [TUS-22-I4]">
      <seq>gcgctataagtcaggcaggctgttaccagagtatcgcccggctaatagccctactttctcggctgctgcgcattcaaactcccaccggaaggttttggagatgagaaagcataagattggtgtgggaggaatgttgattcatgaagcttgtggatatagggtaggacagtagtgagtcatctgcagcgtcttttcagatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcggtgatttgctttggttttccatcaaaatccactaggaattttgaactagtttgttttattatatgcttttaagatagaaatccagaaagaagagctcctaacaaagatttggttgtttttttaatccttccttcttacctctgtcatttgcatggattggaaatgatacatttttgaatcttgagaatgatgtttgtggcagctgctgggaatgtacttgctaagcagttttaacatttgcagaatgtggtgctcgctcgagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100628" stop="101756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100928" g_stop="101456" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E368156" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100928" e_stop="101456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGGAATGTACTTGCTAAGCAGTTTTAACAGTTGCAGAAGGTGGTGTTCGCTCGAGATG</genome_strand>
        <mrna_strand>GCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGCTGCTGGGAATGTACTTGCTAAGCAGTTTTAACATTTGCAGAATGTGGTGCTCGCTCGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237528" ref_strand="+" ref_description="SGN-E237528 [cLED-19-D7]">
      <seq>gcgctataagtcaggcaggctgttaccagagtatcgcccggctaatagccctactttctcggctgctgcgcattcaaactcccaccggaaggttttggagatgagaaagcataagattggtgtgggaggaatgttgattcatgaagcttgtggatatagggtaggacagtagtgagtcatctgcagcgtcttttcagatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcggtgatttgctttggttttccatcaaaatccactaggaattttgaactagtttgttttattatatgcttttaagatagaaatccagaaagaagagctcctaacaaagatttggttgtttttttaatccttccttcttacctctgtcatttgcatggattggaaatgatacatttttgaatcttgagaatgatgtttgtggcagttgctgggaatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100628" stop="101709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100928" g_stop="101409" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E237528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100928" e_stop="101409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGGAATGTACT</genome_strand>
        <mrna_strand>GCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGGAATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412433" ref_strand="-" ref_description="SGN-E412433 [STM-16-C22]">
      <seq>atttgctttggttttccatcaaaatccactaggaattttgaacttagtttgttttattatatgcttttaagatagaaatccagaaagaagagctcctaacaaagatttggttgtttttttaatccttcctacttacctttgtcatttgcatggattggaaatgatacatttttgaatcttgagaatgatgtttgtggcagttgctggaaatgtacttgctaagcagttttaacagttgcagaaggtggtattcgctcgagatggaagttgtgaaggttacagtgttctaattgtttgagggtttgatcatcttactttggttttacccctttatgtaacgaagcattctgcaatgtattgtctatttgtttgaataaaagaaagaagatggaacttagacacagagttctcttctcatggttgaatgatgattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="100895" stop="101931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101195" g_stop="101628" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="451"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E412433" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412433" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101195" e_stop="101628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAAC-TAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGGAATGTACTTGCTAAGCAGTTTTAACAGTTGCAGAAGGTGGTGTTCGCTCGAGATGGAGGTATTGAAGTTTACAGTGTTCTAATTGTTTCAGGGGTTTGATCATCTTGCTTTGGTTTTTACCCCTTTATGTAACGAAGCGTTCTGCAATGTATTGTCTATTTGTTTGAATAAAAGAAAGAAGATGGAACTTATATGCAGAGTTCTCTTCTCATTGTTGAATGATGATT</genome_strand>
        <mrna_strand>ATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTACTTACCTTTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGAAATGTACTTGCTAAGCAGTTTTAACAGTTGCAGAAGGTGGTATTCGCTCGAGATGGAAGTTGTGAAGGTTACAGTGTTCTAATTGTTTGA-GGGTTTGATCATCTTACTTTGG-TTTTACCCCTTTATGTAACGAAGCATTCTGCAATGTATTGTCTATTTGTTTGAATAAAAGAAAGAAGATGGAACTTAGACACAGAGTTCTCTTCTCATGGTTGAATGATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434526" ref_strand="+" ref_description="SGN-E434526 [STM-60-E23]">
      <seq>gggaacattcccaaagagattggaaattgctcaaaattgcagtctctccagctccattttaatactttttacggtccgattcctgctgaactgtataacctgtctaatttgaaggatgtgaacatgagcagcaacatgatctctggtcctattgctgaggagtttgggaaactctcgtctctagttactttcgttgcatacaccaataatcttaccggtccagtgcctcgatctattggaagtttgaaaaatttgacaatatttcgagtggggcagaatgcactttctggaagtttacctgcagagataggtggttgtgagagcttggaatctcttggtctaacacagaattgcctggaaggaaacataccaaaagaacttggcatgcttagtaagttgaaagagcttgtgctttggggaaatcagttctctggttatattccaaaggaacttggaaatttaacacaaattcaattgcttgctttatatcagaataacctgattggagatattcctgctgaaataggtaaactcaaaactttgacgaagttatacctataccggaatggattaaatggtagcattccaagggagattgggaatctttctatggcaacagaaattgatttctcagaaaactttctgaaaggagaaattccagttgagtttggccaaataaaaagtctgaaattgttgtttcttttccagaatcagctcgaaggcgttataccagatgaacttactacattaaagaacttgattagtcttgatttgtcaattaatcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="105968" stop="107356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106268" g_stop="107056" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E434526" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106268" e_stop="107056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAACATTCCCAAAGAGATTGGAAATTGCTCAAAATTGCAGTCTCTCCAGCTCCATTATAATACTTTTTACGGTCCAATTCCTGCTGAACTGTATAACCTGTCTAATTTGAAGGATGTGAACATTAGCAGCAACATGATCTCTGGTCCTATTGCTGAGGAGTTTGGGAAACTCTCATCTCTAGTTACTTTTGTTGCATACACCAATAATCTTACCGGTCCAGTGCCTCGATCTATTGGAAATTTGAAAAATTTGACAATATTTCGAGTGGGGCAGAATGCATTTTCTGGAAGTTTACCTACAGAGATAGGTGGTTGCGAGAGCTTGGAATCTCTTGGTCTAACACAGAATTGCCTGGAAGGAAACATACCGAAAGAACTTGGCATGCTTAGTAAGTTGAAAGAGCTTGTGCTTTGGGGAAATCAGTTCTCTGGTTATATTCCAAAGGAACTTGGAAATTTAACACAAATTCAATTGCTTGCTTTATATCAGAACAACCTGATTGGAGATATTCCTGCTGAAATAGGTAAACTGAAAAATTTGATGAAGTTATACCTATACCGGAATGGATTAAATGGTAGCATTCCAAGGGAGATTGGAAATCTTTCTATGGCAACAGAAATTGATTTCTCAGAAAACTTTCTGAAAGGAGAAATTCCAGTTGAGTTTGGCCAAATAAAAAGTCTGAGACTGTTGTTTCTTTTCCAGAATCAGCTCGAAGGCGTTATACCAGATGAACTTACTACTTTAAAGAATTTGGTTAGTCTTGATTTGTCAATTAATTACCTA</genome_strand>
        <mrna_strand>GGGAACATTCCCAAAGAGATTGGAAATTGCTCAAAATTGCAGTCTCTCCAGCTCCATTTTAATACTTTTTACGGTCCGATTCCTGCTGAACTGTATAACCTGTCTAATTTGAAGGATGTGAACATGAGCAGCAACATGATCTCTGGTCCTATTGCTGAGGAGTTTGGGAAACTCTCGTCTCTAGTTACTTTCGTTGCATACACCAATAATCTTACCGGTCCAGTGCCTCGATCTATTGGAAGTTTGAAAAATTTGACAATATTTCGAGTGGGGCAGAATGCACTTTCTGGAAGTTTACCTGCAGAGATAGGTGGTTGTGAGAGCTTGGAATCTCTTGGTCTAACACAGAATTGCCTGGAAGGAAACATACCAAAAGAACTTGGCATGCTTAGTAAGTTGAAAGAGCTTGTGCTTTGGGGAAATCAGTTCTCTGGTTATATTCCAAAGGAACTTGGAAATTTAACACAAATTCAATTGCTTGCTTTATATCAGAATAACCTGATTGGAGATATTCCTGCTGAAATAGGTAAACTCAAAACTTTGACGAAGTTATACCTATACCGGAATGGATTAAATGGTAGCATTCCAAGGGAGATTGGGAATCTTTCTATGGCAACAGAAATTGATTTCTCAGAAAACTTTCTGAAAGGAGAAATTCCAGTTGAGTTTGGCCAAATAAAAAGTCTGAAATTGTTGTTTCTTTTCCAGAATCAGCTCGAAGGCGTTATACCAGATGAACTTACTACATTAAAGAACTTGATTAGTCTTGATTTGTCAATTAATCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410164" ref_strand="+" ref_description="SGN-E410164 [PPI-16-A14]">
      <seq>gggaacattcccaaagagattggaaattgctcaaaattgcagtctctccagctccattttaatactttttacggtccgattcctgctgaactgtataacctgtctaatttgaaggatgtgaacatgagcagcaacatgatctctggtcctattgctgaggagtttgggaaactctcgtctctagttactttcgttgcatacaccaataatcttaccggtccagtgcctcgatctattggaagtttgaaaaatttgacaatatttcgagtggggcagaatgcactttctggaagtttacctgcagagataggtggttgtgagagcttggaatctcttggtctaacacagaattgcctggaaggaaacataccaaaagaacttggcatgcttagtaagttgaaagagcttgtgctttggggaaatcagttctctggttatattccaaaggaacttggaaatttaacacaaattcaattgcttgctttatatcagaataacctgattggagatattcctgctgaaataggtaaactcaaaactttgacgaagttatacctataccggaatggattaaatggtagcattccaagggagattgggaatctttctatggcaacagaaattgatttctcagaaaactttctgaaaggagaaattccagttgagtttggccaaataaaaagtctgaaattggtgtttctttttcagaatcagctcgaanggcgtataccagatgaacttactacattaaagaactttgatagtcttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="105968" stop="107340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106268" g_stop="107040" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-E410164" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106268" e_stop="107040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAACATTCCCAAAGAGATTGGAAATTGCTCAAAATTGCAGTCTCTCCAGCTCCATTATAATACTTTTTACGGTCCAATTCCTGCTGAACTGTATAACCTGTCTAATTTGAAGGATGTGAACATTAGCAGCAACATGATCTCTGGTCCTATTGCTGAGGAGTTTGGGAAACTCTCATCTCTAGTTACTTTTGTTGCATACACCAATAATCTTACCGGTCCAGTGCCTCGATCTATTGGAAATTTGAAAAATTTGACAATATTTCGAGTGGGGCAGAATGCATTTTCTGGAAGTTTACCTACAGAGATAGGTGGTTGCGAGAGCTTGGAATCTCTTGGTCTAACACAGAATTGCCTGGAAGGAAACATACCGAAAGAACTTGGCATGCTTAGTAAGTTGAAAGAGCTTGTGCTTTGGGGAAATCAGTTCTCTGGTTATATTCCAAAGGAACTTGGAAATTTAACACAAATTCAATTGCTTGCTTTATATCAGAACAACCTGATTGGAGATATTCCTGCTGAAATAGGTAAACTGAAAAATTTGATGAAGTTATACCTATACCGGAATGGATTAAATGGTAGCATTCCAAGGGAGATTGGAAATCTTTCTATGGCAACAGAAATTGATTTCTCAGAAAACTTTCTGAAAGGAGAAATTCCAGTTGAGTTTGGCCAAATAAAAAGTCTGAGACTGTTGTTTCTTTTCCAGAATCAGCTCGAAGGCGTTATACCAGATGAACTTACTACTTTAAAGAATTTGGTTAGTCTTGATTT</genome_strand>
        <mrna_strand>GGGAACATTCCCAAAGAGATTGGAAATTGCTCAAAATTGCAGTCTCTCCAGCTCCATTTTAATACTTTTTACGGTCCGATTCCTGCTGAACTGTATAACCTGTCTAATTTGAAGGATGTGAACATGAGCAGCAACATGATCTCTGGTCCTATTGCTGAGGAGTTTGGGAAACTCTCGTCTCTAGTTACTTTCGTTGCATACACCAATAATCTTACCGGTCCAGTGCCTCGATCTATTGGAAGTTTGAAAAATTTGACAATATTTCGAGTGGGGCAGAATGCACTTTCTGGAAGTTTACCTGCAGAGATAGGTGGTTGTGAGAGCTTGGAATCTCTTGGTCTAACACAGAATTGCCTGGAAGGAAACATACCAAAAGAACTTGGCATGCTTAGTAAGTTGAAAGAGCTTGTGCTTTGGGGAAATCAGTTCTCTGGTTATATTCCAAAGGAACTTGGAAATTTAACACAAATTCAATTGCTTGCTTTATATCAGAATAACCTGATTGGAGATATTCCTGCTGAAATAGGTAAACTCAAAACTTTGACGAAGTTATACCTATACCGGAATGGATTAAATGGTAGCATTCCAAGGGAGATTGGGAATCTTTCTATGGCAACAGAAATTGATTTCTCAGAAAACTTTCTGAAAGGAGAAATTCCAGTTGAGTTTGGCCAAATAAAAAGTCTGAAATTGGTGTTTCTTTTTCAGAATCAGCTCGAANGGCGTATACCAGATGAACTTACTACATTAAAGAACTTTGATAGTCTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434527" ref_strand="+" ref_description="SGN-E434527 [STM-60-E23]">
      <seq>cgggccccccctcgaggagatctgtactctcgactctaggaggattattggcatcataagctggagatgcattacattcccctagaggcccaccgcaaagacctttgtttccaatgaagctgctgatatccatgttccgaaagagtggtatatccggcagtggtccagtcaggtcattgtatgagaagtcaatgcccaagagacttgtcaggtttccaaatgtgcttggtatttcaccactcaaatgattgttgttgagatataggtactctaataggataagattaccaaggttgggtggtatactgccagagagattgttgttgctaagatccattgcaatttgtaagccactaagattacccaactctgatggtatttcacctgacaatagattactgcccatctgcagctcagtcaaatgagagaggctccccaatgctgctggtatctttccagataacttattctctgaaagcaaaagacgttctagctgcgacaagctaccaatgtcatcaggtataacatcagtaaatctgttcttgctgagatccagtctttgtagtgccttgcagttccgaatttctggaggtatcggtccagtgagcgaatttgctgagacgttgaatgtcacaagcctggtaagatttcctatctcccttggcaactggttgaaactattgcctgagaaatcaagcctctgcaacttctggcaatatttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="108452" stop="107137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108152" g_stop="107437" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="725" r_length="715" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E434527" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108152" e_stop="107437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGGAGAATCTGCACTCTCGACTCTAGGAGAATTATTGGCATCATAAGCTGGAGATGCGTTACATTCACCTAGAGGCCCACCACAAAGACCTTTGTTTCCAATGAAGCTGCTGATATCCATGTTCCGAAAGAGTGGTATATCCGGCAGTGGTCCAGTCAAGTCATTGTATGAGAAGTCAATACCCAAGAGACTTGTCAGGTTTCCAAATGTGCTTGGTATTTCACCACTCAAATGATTGTTGTTGAGATAAAGGTACTCTAATAGGATAAGATTACCAAGGTTAGGTGGTATACTTCCAGAGAGATTGTTATTGCTAAGATCCATTGCAATTTGTAAGCCACTAAGATTACCCAACTCTGATGGTATTTCACCTGACAGTAGATTACTGCCCATCTGCAGCTCAGTCAAATGAGAGAGGCTCCCCAATGCTGCTGGTATCTTTCCAGATAACTTATTCTCTGAAAGCAAAAGACGTTCTAGCTGCGACAAGCTACCAATGTCATCAGGTATAACATCAGTAAATCTGTTCTTGCTGAGATCCAGTCTTTGTAGTGCCTTGCAGTTACGAATTTCTGGAGGTATTGGTCCAGTGAGCAAATTTGCTGAGACATTGAATGTCACAAGCCTGGTAAGATTTCCTATCTCCTTAGGCAACTGGTTGAAACTATTGCCTGAGAAATCAAGCCTCTGCAACTTCTGGCAATATCCAATA</genome_strand>
        <mrna_strand>CTCGAGGAG-ATCTGTACTCTCGACTCTAGGAGGATTATTGGCATCATAAGCTGGAGATGCATTACATTCCCCTAGAGGCCCACCGCAAAGACCTTTGTTTCCAATGAAGCTGCTGATATCCATGTTCCGAAAGAGTGGTATATCCGGCAGTGGTCCAGTCAGGTCATTGTATGAGAAGTCAATGCCCAAGAGACTTGTCAGGTTTCCAAATGTGCTTGGTATTTCACCACTCAAATGATTGTTGTTGAGATATAGGTACTCTAATAGGATAAGATTACCAAGGTTGGGTGGTATACTGCCAGAGAGATTGTTGTTGCTAAGATCCATTGCAATTTGTAAGCCACTAAGATTACCCAACTCTGATGGTATTTCACCTGACAATAGATTACTGCCCATCTGCAGCTCAGTCAAATGAGAGAGGCTCCCCAATGCTGCTGGTATCTTTCCAGATAACTTATTCTCTGAAAGCAAAAGACGTTCTAGCTGCGACAAGCTACCAATGTCATCAGGTATAACATCAGTAAATCTGTTCTTGCTGAGATCCAGTCTTTGTAGTGCCTTGCAGTTCCGAATTTCTGGAGGTATCGGTCCAGTGAGCGAATTTGCTGAGACGTTGAATGTCACAAGCCTGGTAAGATTTCCTATCTCCCTTGGCAACTGGTTGAAACTATTGCCTGAGAAATCAAGCCTCTGCAACTTCTGGCAATATTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570917" ref_strand="+" ref_description="SGN-E570917 [15576]">
      <seq>aactagtctcgagttatggaatataactgagtgagaaaagcataaagcatattattttccataaccatcagatggagaactattgaaataacatcaatcacgctccaaactagttctagaaagtgattgatgaagattttcactatgaggaaatatacatgggaatatctataatttagccattaagaaaaaaaatacaaggagaattagtactaaaaaattatcaaagttaattgagatgtgcttcttacatgcatctagaaggaattatctttcagagggagatcataaactggagatgagagaaagttcccttcttgctcatcagactcaatcagcatcagaacaaactcgcgcattgaaggacgatcataaggggacatgctcgtgcacattagagcaattttaagaactgtaagcatatgactaacagtaattacatcttccaaatccaatcgggtatcgaagtaccccctggtgtcaatgaatggttcctaacataatgcttcagcccatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="110417" stop="109321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110106" g_stop="109621" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="520" r_length="489" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-E570917" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110106" e_stop="109621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAAAGCATAAAGCATATTATTTTCCATAACCTTCAGATGGAGAACTATTGAAATAACATCAATCAC-CTCCAAACTAGTTCTAGAAAGTGATTGATGAA-ATTTTCACTATGA-GAAATATACATGGGAATATCTATAATTTAGCCATTAAGAAAAAAAAATACAAGGAGAATTAGTACTAAAAAATTATCAAAGTTAATTGAGATGTGCTTCTTACATGCTCATCTAGAAGGAATTATCTTTCAGAGGGAGATCATAAACTGGAGATGAGATAAAGTTCCCTTCTTGCTCATCAGACTCAATCAGCATCAGAACAACCTCGCGCATTGAAGGACGATCATACGGGGACATGCTAGTGCACATTAGAGCAATTTTAAGAACTGTAAGCATATGACTAACAGTAATTACATCTTCCAAATCCAATCGGCTATCG-AGTA-CCCCTGGTGTCAATGAATGGTTCCTAACATAATGCTTCA-CCCATGTGA</genome_strand>
        <mrna_strand>TGAGAAAAGCATAAAGCATATTATTTTCCATAACCATCAGATGGAGAACTATTGAAATAACATCAATCACGCTCCAAACTAGTTCTAGAAAGTGATTGATGAAGATTTTCACTATGAGGAAATATACATGGGAATATCTATAATTTAGCCATTAAG-AAAAAAAATACAAGGAGAATTAGTACTAAAAAATTATCAAAGTTAATTGAGATGTGCTTCTTACATG--CATCTAGAAGGAATTATCTTTCAGAGGGAGATCATAAACTGGAGATGAGAGAAAGTTCCCTTCTTGCTCATCAGACTCAATCAGCATCAGAACAAACTCGCGCATTGAAGGACGATCATAAGGGGACATGCTCGTGCACATTAGAGCAATTTTAAGAACTGTAAGCATATGACTAACAGTAATTACATCTTCCAAATCCAATCGGGTATCGAAGTACCCCCTGGTGTCAATGAATGGTTCCTAACATAATGCTTCAGCCCATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>138</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8209" PGL_stop="1905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8209" e_stop="8137"/>
            <exon e_start="7988" e_stop="7886"/>
            <exon e_start="6691" e_stop="6607"/>
            <exon e_start="5305" e_stop="5194"/>
            <exon e_start="5050" e_stop="4966"/>
            <exon e_start="4808" e_stop="4767"/>
            <exon e_start="4665" e_stop="4587"/>
            <exon e_start="3900" e_stop="3849"/>
            <exon e_start="3746" e_stop="3684"/>
            <exon e_start="3009" e_stop="2912"/>
            <exon e_start="2060" e_stop="2025"/>
            <exon e_start="1947" e_stop="1905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.875" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.803" e_score="1.000"/>
          <exon-intron don_prob="0.079" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8209" e_stop="8137" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.875" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7988" e_stop="7886" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6691" e_stop="6607" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5305" e_stop="5194" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.985">
            <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5050" e_stop="4966" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4808" e_stop="4767" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4766" i_stop="4666" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4665" e_stop="4587" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.862">
            <gDNA_intron_boundary i_start="4586" i_stop="3901" i_length="686"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3900" e_stop="3849" e_length="52"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.803">
            <gDNA_intron_boundary i_start="3848" i_stop="3747" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3746" e_stop="3684" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.079" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3683" i_stop="3010" i_length="674"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3009" e_stop="2912" e_length="98"/>
          </exon>
          <intron i_serial="10" don_prob="0.985" acc_prob="0.972">
            <gDNA_intron_boundary i_start="2911" i_stop="2061" i_length="851"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="2060" e_stop="2025" e_length="36"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="2024" i_stop="1948" i_length="77"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="1947" e_stop="1905" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8209" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4767"/>
              <exon start="4665" stop="4606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8209" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8208" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8208" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4767"/>
              <exon start="4665" stop="4601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8197" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8195" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4767"/>
              <exon start="4665" stop="4587"/>
              <exon start="3900" stop="3849"/>
              <exon start="3746" stop="3684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6643" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4767"/>
              <exon start="4665" stop="4587"/>
              <exon start="3900" stop="3849"/>
              <exon start="3746" stop="3684"/>
              <exon start="3009" stop="2912"/>
              <exon start="2060" stop="2025"/>
              <exon start="1947" stop="1905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAG : ATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAG : CCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA : GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG : GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAG : TGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAG : GACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTCTTGCCTTAGTTGAG : GCAGCTGGTGTAAAGCGCCTTCTCTTCTGCGGGGTTGGCTGCCAAGTTCAAG : CTTTAAGATCAGTGGAGCAATATTTGAATCTGGAAAAACTTTATGTTCTAGGCACTAACTGTG : TGGATAATGGACCACGAGAAGGTTTAGATAAATTTCTGAAGGCTGCTAGCAGTGAACCTGAAACAGTTCTCCACTATGAGTTTATGCAAGACTACAAG : GTCCATCTGAAGCATTTGGATGGCCATATTGAAGAG : GTTCCCTATTTCTGTTTACCAGCAAATGACTTGGTTGATGTTA</gDNA_template>
            <first_frame> A  F  L  T  G  K  I  S  T  L  P  F  K  F  Y  T  V  S  S  S  S  Q  Q  Q   : D  A  N  Q  N  L  K  S  V  K  I  R  E  D  W  R  K  K  S  R  P  I  P  P  G  G  T  Y  P  A  K  D  H  C  S :   H  C  G  L  C  D  T  Y  Y  I  A  H  V  N  N  A  C  A  F  L  G  D  G  M  S  R  V  E  :  A  L  E  P  I  V  H  G  R  G  R  K  E  D  S  L  D  E  I  Y  M  G  V  Y  E  N  L  L  Y  A  R  K  T  K  P  V  E   : G  A  Q  W  T  G  I  V  T  T  I  A  V  E  M  L  K  A  G  M  V  E  A  V  I  C  V  Q  S :   D  P  E  D  R  F  A  P  R  P  V  L  A  R :   T  P  E  E  V  I  A  A  K  G  V  K  P  T  L  S  P  N  L  N  T  L  A  L  V  E  :  A  A  G  V  K  R  L  L  F  C  G  V  G  C  Q  V  Q   : A  L  R  S  V  E  Q  Y  L  N  L  E  K  L  Y  V  L  G  T  N  C   : V  D  N  G  P  R  E  G  L  D  K  F  L  K  A  A  S  S  E  P  E  T  V  L  H  Y  E  F  M  Q  D  Y  K  :  V  H  L  K  H  L  D  G  H  I  E  E  :  V  P  Y  F  C  L  P  A  N  D  L  V  D  V  </first_frame>
            <second_frame>  R  F  L  L  E  K  S  L  L  Y  P  S  N  F  T  L  F  H  L  L  H  N  N  K  :  M  Q  T  K  T  *  N  Q  *  K  L  E  K  I  G  G  K  N  L  D  L  F  L  L  V  G  L  I  Q  L  K  T  T  A   : A  T  V  V  C  V  T  L  T  T  L  L  M  *  I  M  H  V  L  S  W  G  M  A  C  L  E  L  K :   L  W  N  L  L  S  M  D  E  D  G  K  K  I  P  W  M  R  F  I  W  G  C  M  R  I  Y  C  M  L  V  K  L  S  L  W  K  :  E  L  N  G  R  G  *  *  Q  L  L  P  W  R  C  *  K  L  G  W  W  K  L  L  F  V  F  R   : V  I  Q  K  I  D  L  L  L  D  L  S  W  Q   : G  L  Q  R  K  L  *  Q  L  K  V  L  S  R  H  C  L  L  I  *  I  L  L  P  *  L  R :   Q  L  V  *  S  A  F  S  S  A  G  L  A  A  K  F  K  :  L  *  D  Q  W  S  N  I  *  I  W  K  N  F  M  F  *  A  L  T  V  :  W  I  M  D  H  E  K  V  *  I  N  F  *  R  L  L  A  V  N  L  K  Q  F  S  T  M  S  L  C  K  T  T  R :   S  I  *  S  I  W  M  A  I  L  K  R :   F  P  I  S  V  Y  Q  Q  M  T  W  L  M  L </second_frame>
            <third_frame>   V  S  Y  W  K  N  L  Y  F  T  L  Q  I  L  H  C  F  I  F  F  T  T  T  R :   C  K  P  K  P  E  I  S  E  N  *  R  R  L  E  E  K  I  S  T  Y  S  S  W  W  D  L  S  S  *  R  P  L  Q  :  P  L  W  F  V  *  H  L  L  H  C  S  C  E  *  C  M  C  F  L  G  G  W  H  V  *  S  *   : S  F  G  T  Y  C  P  W  T  R  T  E  R  R  F  L  G  *  D  L  Y  G  G  V  *  E  S  I  V  C  S  *  N  *  A  C  G  R :   S  S  M  D  G  D  S  D  N  Y  C  R  G  D  A  K  S  W  D  G  G  S  C  Y  L  C  S  E  :  *  S  R  R  S  I  C  S  S  T  C  P  G  K  :  D  S  R  G  S  Y  S  S  *  R  C  *  A  D  T  V  S  *  S  K  Y  S  C  L  S  *   : G  S  W  C  K  A  P  S  L  L  R  G  W  L  P  S  S  S :   F  K  I  S  G  A  I  F  E  S  G  K  T  L  C  S  R  H  *  L  C :   G  *  W  T  T  R  R  F  R  *  I  S  E  G  C  *  Q  *  T  *  N  S  S  P  L  *  V  Y  A  R  L  Q   : G  P  S  E  A  F  G  W  P  Y  *  R   : G  S  L  F  L  F  T  S  K  *  L  G  *  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8209" stop="8137"/>
                    <exon start="7988" stop="7886"/>
                    <exon start="6691" stop="6607"/>
                    <exon start="5305" stop="5194"/>
                    <exon start="5050" stop="4966"/>
                    <exon start="4808" stop="4767"/>
                    <exon start="4665" stop="4587"/>
                    <exon start="3900" stop="3849"/>
                    <exon start="3746" stop="3684"/>
                    <exon start="3009" stop="2912"/>
                    <exon start="2060" stop="2025"/>
                    <exon start="1947" stop="1906"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLTGKISTLPFKFYTVSSSSQQQDANQNLKSVKIREDWRKKSRPIPPGGTYPAKDHCSHCGLCDTYYIAHVNNACAFLGDGMSRVEALEPIVHGRGRKEDSLDEIYMGVYENLLYARKTKPVEGAQWTGIVTTIAVEMLKAGMVEAVICVQSDPEDRFAPRPVLARTPEEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEQYLNLEKLYVLGTNCVDNGPREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9338" PGL_stop="9034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9338" e_stop="9034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="9338" e_stop="9034" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9338" stop="9034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9338" stop="9035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9338" stop="9036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTTTT</gDNA_template>
            <first_frame> V  E  L  S  N  V  G  L  *  P  K  W  G  C  *  G  G  G  I  L  G  C  P  R  W  L  G  L  V  G  *  F  L  A  C  P  I  Q  A  Q  S  W  I  M  W  S  N  *  K  N  G  L  L  D  S  *  S  G  V  D  R  V  R  L  V  S  Q  S  N  E  K  L  P  L  C  A  V  E  G  *  R  T  G  A  F  Q  V  P  L  M  P  D  G  L  L  Q  L  N  H  H  F   </first_frame>
            <second_frame>  S  S  L  V  T  W  A  C  N  P  S  G  D  V  K  V  V  E  Y  W  A  V  P  D  G  W  A  W  W  A  N  F  W  P  A  L  S  K  H  R  V  G  S  C  G  P  I  E  R  M  G  Y  *  I  P  K  V  G  W  T  A  *  G  W  F  H  R  A  T  K  N  F  R  F  V  Q  W  K  D  N  G  P  V  P  S  K  F  H  *  C  L  M  G  C  S  N  *  T  T  T  F  </second_frame>
            <third_frame>   R  A  *  *  R  G  L  V  T  Q  V  G  M  L  R  W  W  N  I  G  L  S  Q  M  A  G  L  G  G  L  I  S  G  L  P  Y  P  S  T  E  L  D  H  V  V  Q  L  K  E  W  A  T  R  F  L  K  W  G  G  P  R  E  A  G  F  T  E  Q  R  K  T  S  A  L  C  S  G  R  I  T  D  R  C  L  P  S  S  I  N  A  *  W  A  A  P  I  K  P  P  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9324" stop="9064"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGLVTQVGMLRWWNIGLSQMAGLGGLISGLPYPSTELDHVVQLKEWATRFLKWGGPREAGFTEQRKTSALCSGRITDRCLPSSINA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14627" PGL_stop="11030"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14627" e_stop="14545"/>
            <exon e_start="13967" e_stop="13891"/>
            <exon e_start="13391" e_stop="13324"/>
            <exon e_start="13123" e_stop="13010"/>
            <exon e_start="12898" e_stop="12726"/>
            <exon e_start="12593" e_stop="12525"/>
            <exon e_start="12148" e_stop="11972"/>
            <exon e_start="11551" e_stop="11030"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.382" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14627" e_stop="14545" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14544" i_stop="13968" i_length="577"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13967" e_stop="13891" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.382" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13890" i_stop="13392" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13391" e_stop="13324" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.892">
            <gDNA_intron_boundary i_start="13323" i_stop="13124" i_length="200"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13123" e_stop="13010" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="13009" i_stop="12899" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12898" e_stop="12726" e_length="173"/>
          </exon>
          <intron i_serial="5" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12725" i_stop="12594" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12593" e_stop="12525" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.918" acc_prob="0.855">
            <gDNA_intron_boundary i_start="12524" i_stop="12149" i_length="376"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12148" e_stop="11972" e_length="177"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11971" i_stop="11552" i_length="420"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11551" e_stop="11030" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14627" stop="14545"/>
              <exon start="13967" stop="13891"/>
              <exon start="13391" stop="13324"/>
              <exon start="13123" stop="13010"/>
              <exon start="12898" stop="12726"/>
              <exon start="12593" stop="12525"/>
              <exon start="12148" stop="11972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14626" stop="14545"/>
              <exon start="13967" stop="13891"/>
              <exon start="13391" stop="13324"/>
              <exon start="13123" stop="13010"/>
              <exon start="12898" stop="12726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12817" stop="12726"/>
              <exon start="12593" stop="12525"/>
              <exon start="12148" stop="11972"/>
              <exon start="11551" stop="11106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12575" stop="12525"/>
              <exon start="12148" stop="11972"/>
              <exon start="11551" stop="11030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11437" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11299" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11266" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAG : GCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAA : AAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAG : AAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCC : GTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAG : TTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAG : GAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG : GTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCTGT</gDNA_template>
            <first_frame> M  R  M  Y  N  W  N  V  M  L  L  M  S  V  P  S  Y  W  L  L  K  *  L  A  W  K  R  R :   H  F  V  *  D  L  M  S  L  S  W  R  K  N  W  R  S  H  K  L  K  C  L  L  T   : K  R  K  S  Q  A  L  K  K  I  V  K  I  C  N  Q  Q  S  M  L  *  R  K  :  K  R  S  S  C  N  P  N  S  *  *  L  L  L  M  E  S  Q  L  I  L  A  G  I  C  L  Q  K  *  M  Y  Q  L  L  Q  R  I  S  :  V  K  I  I  L  Q  V  A  P  *  M  I  L  I  W  L  V  L  M  A  P  P  H  L  P  C  P  I  L  D  S  L  V  S  E  V  C  H  Q  P  F  L  Q  I  R  L  G  *  S  K  T  L  I  H  *  F  L  S :   *  P  W  R  K  T  N  *  Q  K  P  C  Q  L  N  H  L  S  A  L  H  *  R :   S  *  T  R  T  *  L  G  S  L  K  F  K  H  K  D  W  S  F  *  L  L  K  A  W  Q  M  I  T  A  K  Q  D  N  Q  M  R  Y  L  Y  M  T  I  C  H  I  L  M  R  I  C  H  M  L  M  K  E  M  R :   W  W  N  G  Y  W  D  G  S  *  N  Y  F  L  E  G  H  Q  D  D  E  L  A  S  F  F  N  L  H  G  K  R  T  M  M  S  Y  P  C  E  K  L  V  F  F  F  S  P  A  L  H  F  C  S  Q  T  E  S  G  F  C  T  L  S  M  V  Y  T  H  T  L  H  S  F  P  P  E  E  A  N  C  I  *  E  A  F  W  K  M  E  *  L  F  S  T  V  L  A  I  K  H  D  R  V  V  Y  K  R  I  R  L  S  N  I  V  M  K  I  K  M  C  F  S  C  Q  S  *  E  K  K  T  S  N  V  S  Y  F  S  C  G  N  D  V  *  I  F  *  H  C  I  P  C  V  V  F  V  E  S  W  G  L  R  K  A  Q  Y  I  K  K  M  I  L  A   </first_frame>
            <second_frame>  C  E  C  T  I  G  M  *  C  C  *  *  A  C  Q  V  I  G  F  *  S  D  W  L  G  R  E   : G  T  S  S  K  I  *  *  A  *  A  G  E  R  I  G  E  V  T  S  *  N  V  F  L  Q  :  K  E  N  R  K  P  *  K  R  S  S  R  S  A  I  N  N  R  C  F  K  G  R :   K  E  A  L  A  I  Q  I  P  N  S  F  C  *  W  K  V  S  *  S  *  Q  E  Y  A  Y  K  N  R  C  I  N  F  Y  R  G  S  P :   *  R  *  Y  C  K  W  H  H  K  *  Y  *  F  G  W  Y  *  W  P  H  H  I  F  P  A  R  F  W  T  V  *  S  R  K  F  V  T  S  H  S  S  R  S  D  *  D  D  P  K  H  *  Y  I  N  F  *   : V  S  L  G  E  R  R  I  N  K  S  P  V  S  *  I  I  S  V  L  Y  I  E   : G  V  K  Q  G  L  N  S  E  A  *  S  S  N  T  K  I  G  A  F  N  C  S  K  H  G  K  *  *  Q  P  S  K  T  T  R  C  G  I  C  T  *  Q  Y  A  I  F  *  *  E  Y  A  I  C  *  *  R  R  *   : G  G  G  T  G  I  G  M  D  H  E  T  I  S  W  R  A  T  K  T  T  N  *  Q  A  S  L  I  S  M  A  S  E  Q  *  *  V  I  P  A  K  S  W  S  F  S  S  L  Q  P  C  I  F  V  A  K  R  S  L  D  F  V  H  Y  P  W  F  I  H  T  H  C  I  L  F  P  Q  K  K  Q  I  V  S  K  R  H  F  G  R  W  N  S  C  S  R  Q  F  W  Q  *  N  M  T  V  L  F  T  R  E  F  V  Y  Q  T  L  *  *  R  S  R  C  V  L  V  V  N  H  E  R  K  K  L  Q  M  F  L  T  F  H  V  E  M  M  F  R  S  F  D  I  V  F  L  V  L  Y  L  L  K  A  G  A  *  E  K  P  N  I  S  K  R  *  F  W  L  </second_frame>
            <third_frame>   A  N  V  Q  L  E  C  N  A  A  D  E  R  A  K  L  L  A  S  E  V  I  G  L  E  E  K  :  A  L  R  L  R  S  N  E  L  K  L  E  K  E  L  E  K  S  Q  A  E  M  S  S  Y  K :   K  K  I  A  S  L  E  K  D  R  Q  D  L  Q  S  T  I  D  A  L  K  E   : E  K  K  L  L  Q  S  K  F  L  I  A  S  A  N  G  K  S  V  D  P  S  R  N  M  P  T  K  I  D  V  S  T  S  T  E  D  L   : R  E  D  N  I  A  S  G  T  I  N  D  T  N  L  V  G  I  D  G  P  T  T  S  S  L  P  D  F  G  Q  F  S  L  G  S  L  S  P  A  I  P  P  D  Q  I  R  M  I  Q  N  I  N  T  L  I  S  E  :  L  A  L  E  K  D  E  L  T  K  A  L  S  V  E  S  S  Q  C  S  T  L  K  :  E  L  N  K  D  L  T  R  K  L  E  V  Q  T  Q  R  L  E  L  L  T  A  Q  S  M  A  N  D  N  S  Q  A  R  Q  P  D  A  V  S  V  H  D  N  M  P  Y  S  D  E  N  M  P  Y  A  D  E  G  D  E  :  V  V  E  R  V  L  G  W  I  M  K  L  F  P  G  G  P  P  R  R  R  T  S  K  L  L  *  S  P  W  Q  A  N  N  D  E  L  S  L  R  K  A  G  L  F  L  L  S  S  P  A  F  L  *  P  N  G  V  W  I  L  Y  I  I  H  G  L  Y  T  H  I  A  F  F  S  P  R  R  S  K  L  Y  L  R  G  I  L  E  D  G  I  A  V  L  D  S  F  G  N  K  T  *  P  C  C  L  Q  E  N  S  F  I  K  H  C  N  E  D  Q  D  V  F  *  L  S  I  M  R  E  K  N  F  K  C  F  L  L  F  M  W  K  *  C  L  D  L  L  T  L  Y  S  L  C  C  I  C  *  K  L  G  L  K  K  S  P  I  Y  Q  K  D  D  F  G  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14625" stop="14545"/>
                    <exon start="13967" stop="13891"/>
                    <exon start="13391" stop="13324"/>
                    <exon start="13123" stop="13010"/>
                    <exon start="12898" stop="12726"/>
                    <exon start="12593" stop="12525"/>
                    <exon start="12148" stop="11972"/>
                    <exon start="11551" stop="11471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANVQLECNAADERAKLLASEVIGLEEKALRLRSNELKLEKELEKSQAEMSSYKKKIASLEKDRQDLQSTIDALKEEKKLLQSKFLIASANGKSVDPSRNMPTKIDVSTSTEDLREDNIASGTINDTNLVGIDGPTTSSLPDFGQFSLGSLSPAIPPDQIRMIQNINTLISELALEKDELTKALSVESSQCSTLKELNKDLTRKLEVQTQRLELLTAQSMANDNSQARQPDAVSVHDNMPYSDENMPYADEGDEVVERVLGWIMKLFPGGPPRRRTSKLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12689" e_stop="11972"/>
            <exon e_start="11551" e_stop="11032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12689" e_stop="11972" e_length="718"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11971" i_stop="11552" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11551" e_stop="11032" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12689" stop="12179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12405" stop="11972"/>
              <exon start="11551" stop="11152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11437" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11299" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11266" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG : GTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</gDNA_template>
            <first_frame> P  S  N  F  V  P  S  S  L  F  P  *  K  S  R  H  I  Y  *  L  I  T  K  I  L  H  Y  L  E  *  L  Q  L  A  L  E  K  D  E  L  T  K  A  L  S  V  E  S  S  Q  C  S  T  L  K  V  T  *  T  H  V  L  D  S  N  I  I  L  I  G  F  T  F  F  V  C  S  *  D  L  H  L  E  L  W  I  S  F  C  F  P  L  Y  L  *  V  N  Y  K  C  I  V  G  H  G  F  F  G  H  I  W  M  S  N  F  *  I  A  I  P  Y  N  M  L  R  H  S  S  *  Y  P  A  S  F  V  V  V  L  A  I  E  V  S  L  H  K  F  S  *  S  S  Q  L  V  *  R  R  I  L  I  V  L  L  S  L  *  L  S  W  G  I  C  L  S  V  H  F  G  Y  K  G  V  K  Q  G  L  N  S  E  A  *  S  S  N  T  K  I  G  A  F  N  C  S  K  H  G  K  *  *  Q  P  S  K  T  T  R  C  G  I  C  T  *  Q  Y  A  I  F  *  *  E  Y  A  I  C  *  *  R  R  *   : G  G  G  T  G  I  G  M  D  H  E  T  I  S  W  R  A  T  K  T  T  N  *  Q  A  S  L  I  S  M  A  S  E  Q  *  *  V  I  P  A  K  S  W  S  F  S  S  L  Q  P  C  I  F  V  A  K  R  S  L  D  F  V  H  Y  P  W  F  I  H  T  H  C  I  L  F  P  Q  K  K  Q  I  V  S  K  R  H  F  G  R  W  N  S  C  S  R  Q  F  W  Q  *  N  M  T  V  L  F  T  R  E  F  V  Y  Q  T  L  *  *  R  S  R  C  V  L  V  V  N  H  E  R  K  K  L  Q  M  F  L  T  F  H  V  E  M  M  F  R  S  F  D  I  V  F  L  V  L  Y  L  L  K  A  G  A  *  E  K  P  N  I  S  K  R  *  F  W   </first_frame>
            <second_frame>  P  L  I  L  S  H  H  L  C  S  L  K  N  Q  G  I  F  I  N  *  *  L  K  Y  C  T  T  W  N  D  Y  S  *  P  W  R  K  T  N  *  Q  K  P  C  Q  L  N  H  L  S  A  L  H  *  R  *  L  E  L  M  C  *  T  A  T  S  F  *  S  A  S  L  F  L  C  V  V  K  I  F  T  W  N  F  G  F  L  S  V  S  L  C  I  F  E  *  T  T  N  A  *  L  D  M  V  S  L  V  I  Y  G  C  L  I  S  K  *  P  S  P  T  T  C  S  D  I  L  L  N  I  R  P  A  L  L  *  C  *  Q  *  K  S  P  C  I  S  F  L  D  L  H  S  *  F  E  G  G  Y  *  *  F  F  S  L  Y  N  C  L  G  G  F  A  F  L  F  I  L  G  I  K  E  L  N  K  D  L  T  R  K  L  E  V  Q  T  Q  R  L  E  L  L  T  A  Q  S  M  A  N  D  N  S  Q  A  R  Q  P  D  A  V  S  V  H  D  N  M  P  Y  S  D  E  N  M  P  Y  A  D  E  G  D  E  :  V  V  E  R  V  L  G  W  I  M  K  L  F  P  G  G  P  P  R  R  R  T  S  K  L  L  *  S  P  W  Q  A  N  N  D  E  L  S  L  R  K  A  G  L  F  L  L  S  S  P  A  F  L  *  P  N  G  V  W  I  L  Y  I  I  H  G  L  Y  T  H  I  A  F  F  S  P  R  R  S  K  L  Y  L  R  G  I  L  E  D  G  I  A  V  L  D  S  F  G  N  K  T  *  P  C  C  L  Q  E  N  S  F  I  K  H  C  N  E  D  Q  D  V  F  *  L  S  I  M  R  E  K  N  F  K  C  F  L  L  F  M  W  K  *  C  L  D  L  L  T  L  Y  S  L  C  C  I  C  *  K  L  G  L  K  K  S  P  I  Y  Q  K  D  D  F  G  </second_frame>
            <third_frame>   L  *  F  C  P  I  I  F  V  P  L  K  I  K  A  Y  L  L  T  N  N  *  N  I  A  L  L  G  M  T  T  V  S  L  G  E  R  R  I  N  K  S  P  V  S  *  I  I  S  V  L  Y  I  E  G  N  L  N  S  C  A  R  Q  Q  H  H  S  N  R  L  H  F  F  C  V  *  L  R  S  S  P  G  T  L  D  F  F  L  F  P  F  V  S  L  S  K  L  Q  M  H  S  W  T  W  F  L  W  S  Y  M  D  V  *  F  L  N  S  H  P  L  Q  H  A  Q  T  F  F  L  I  S  G  Q  L  C  C  S  V  S  N  R  S  L  L  A  *  V  F  L  I  F  T  A  S  L  K  A  D  T  N  S  S  S  L  F  I  I  V  L  G  D  L  P  F  C  S  F  W  V  *  R  S  *  T  R  T  *  L  G  S  L  K  F  K  H  K  D  W  S  F  *  L  L  K  A  W  Q  M  I  T  A  K  Q  D  N  Q  M  R  Y  L  Y  M  T  I  C  H  I  L  M  R  I  C  H  M  L  M  K  E  M  R :   W  W  N  G  Y  W  D  G  S  *  N  Y  F  L  E  G  H  Q  D  D  E  L  A  S  F  F  N  L  H  G  K  R  T  M  M  S  Y  P  C  E  K  L  V  F  F  F  S  P  A  L  H  F  C  S  Q  T  E  S  G  F  C  T  L  S  M  V  Y  T  H  T  L  H  S  F  P  P  E  E  A  N  C  I  *  E  A  F  W  K  M  E  *  L  F  S  T  V  L  A  I  K  H  D  R  V  V  Y  K  R  I  R  L  S  N  I  V  M  K  I  K  M  C  F  S  C  Q  S  *  E  K  K  T  S  N  V  S  Y  F  S  C  G  N  D  V  *  I  F  *  H  C  I  P  C  V  V  F  V  E  S  W  G  L  R  K  A  Q  Y  I  K  K  M  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12208" stop="11972"/>
                    <exon start="11551" stop="11471"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLYNCLGGFAFLFILGIKELNKDLTRKLEVQTQRLELLTAQSMANDNSQARQPDAVSVHDNMPYSDENMPYADEGDEVVERVLGWIMKLFPGGPPRRRTSKLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12690" e_stop="11972"/>
            <exon e_start="11814" e_stop="11807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12690" e_stop="11972" e_length="719"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="11971" i_stop="11815" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="11814" e_stop="11807" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12690" stop="11972"/>
              <exon start="11814" stop="11807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12689" stop="12179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG : CAAATGGA</gDNA_template>
            <first_frame> S  L  *  F  C  P  I  I  F  V  P  L  K  I  K  A  Y  L  L  T  N  N  *  N  I  A  L  L  G  M  T  T  V  S  L  G  E  R  R  I  N  K  S  P  V  S  *  I  I  S  V  L  Y  I  E  G  N  L  N  S  C  A  R  Q  Q  H  H  S  N  R  L  H  F  F  C  V  *  L  R  S  S  P  G  T  L  D  F  F  L  F  P  F  V  S  L  S  K  L  Q  M  H  S  W  T  W  F  L  W  S  Y  M  D  V  *  F  L  N  S  H  P  L  Q  H  A  Q  T  F  F  L  I  S  G  Q  L  C  C  S  V  S  N  R  S  L  L  A  *  V  F  L  I  F  T  A  S  L  K  A  D  T  N  S  S  S  L  F  I  I  V  L  G  D  L  P  F  C  S  F  W  V  *  R  S  *  T  R  T  *  L  G  S  L  K  F  K  H  K  D  W  S  F  *  L  L  K  A  W  Q  M  I  T  A  K  Q  D  N  Q  M  R  Y  L  Y  M  T  I  C  H  I  L  M  R  I  C  H  M  L  M  K  E  M  S :   K  W  </first_frame>
            <second_frame>  P  S  N  F  V  P  S  S  L  F  P  *  K  S  R  H  I  Y  *  L  I  T  K  I  L  H  Y  L  E  *  L  Q  L  A  L  E  K  D  E  L  T  K  A  L  S  V  E  S  S  Q  C  S  T  L  K  V  T  *  T  H  V  L  D  S  N  I  I  L  I  G  F  T  F  F  V  C  S  *  D  L  H  L  E  L  W  I  S  F  C  F  P  L  Y  L  *  V  N  Y  K  C  I  V  G  H  G  F  F  G  H  I  W  M  S  N  F  *  I  A  I  P  Y  N  M  L  R  H  S  S  *  Y  P  A  S  F  V  V  V  L  A  I  E  V  S  L  H  K  F  S  *  S  S  Q  L  V  *  R  R  I  L  I  V  L  L  S  L  *  L  S  W  G  I  C  L  S  V  H  F  G  Y  K  G  V  K  Q  G  L  N  S  E  A  *  S  S  N  T  K  I  G  A  F  N  C  S  K  H  G  K  *  *  Q  P  S  K  T  T  R  C  G  I  C  T  *  Q  Y  A  I  F  *  *  E  Y  A  I  C  *  *  R  R  *   : A  N  G </second_frame>
            <third_frame>   P  L  I  L  S  H  H  L  C  S  L  K  N  Q  G  I  F  I  N  *  *  L  K  Y  C  T  T  W  N  D  Y  S  *  P  W  R  K  T  N  *  Q  K  P  C  Q  L  N  H  L  S  A  L  H  *  R  *  L  E  L  M  C  *  T  A  T  S  F  *  S  A  S  L  F  L  C  V  V  K  I  F  T  W  N  F  G  F  L  S  V  S  L  C  I  F  E  *  T  T  N  A  *  L  D  M  V  S  L  V  I  Y  G  C  L  I  S  K  *  P  S  P  T  T  C  S  D  I  L  L  N  I  R  P  A  L  L  *  C  *  Q  *  K  S  P  C  I  S  F  L  D  L  H  S  *  F  E  G  G  Y  *  *  F  F  S  L  Y  N  C  L  G  G  F  A  F  L  F  I  L  G  I  K  E  L  N  K  D  L  T  R  K  L  E  V  Q  T  Q  R  L  E  L  L  T  A  Q  S  M  A  N  D  N  S  Q  A  R  Q  P  D  A  V  S  V  H  D  N  M  P  Y  S  D  E  N  M  P  Y  A  D  E  G  D  E  :  Q  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12208" stop="11972"/>
                    <exon start="11814" stop="11809"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLYNCLGGFAFLFILGIKELNKDLTRKLEVQTQRLELLTAQSMANDNSQARQPDAVSVHDNMPYSDENMPYADEGDEQM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18971" PGL_stop="17097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18971" e_stop="18482"/>
            <exon e_start="17113" e_stop="17097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18971" e_stop="18482" e_length="490"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.947">
            <gDNA_intron_boundary i_start="18481" i_stop="17114" i_length="1368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17113" e_stop="17097" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18971" stop="18482"/>
              <exon start="17113" stop="17097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTGAAGTTGGGAGAAATGTTGCTGGTGTGGGATCTAATAATTTTGTAGTGCCTGATAAAGGATACAGCCAGTTAAACAGCTCTGCTCTTCACTCAACTAAAACTTCTTCTTGGACATCGGACTCCAAGTATGATGGTTTTAGTTTTGATGCTAGAAGTTCTTCTAGTTACTCACAGATGTCCCCGCCCACAGCTGGGGCGACTGGGAGGAGAACTCCCTCTTTCCTTGATTCCATGAACATTTCAAAAGTCTCTGCTGCATCCCCTCCCTCAATCGGATCAGTTACTACAGACACATATGACTCAATGGCTTACCCTAGGGACACTCTGGGTTTATCAAGTTCTGAGAACTTAACAAATTCTTCAAAAAATTCTGGTAATGGGACTGTTCTGTACAAGCATGCTGTTGAGAAAGATATGGGCAATTTGGACAACAGACATCCATTTTATTCACAGAAGCAAAATGAAGATTTTGCTGCGTTAGAACAG : CATATTGAAGATTTAAC</gDNA_template>
            <first_frame> S  *  S  W  E  K  C  C  W  C  G  I  *  *  F  C  S  A  *  *  R  I  Q  P  V  K  Q  L  C  S  S  L  N  *  N  F  F  L  D  I  G  L  Q  V  *  W  F  *  F  *  C  *  K  F  F  *  L  L  T  D  V  P  A  H  S  W  G  D  W  E  E  N  S  L  F  P  *  F  H  E  H  F  K  S  L  C  C  I  P  S  L  N  R  I  S  Y  Y  R  H  I  *  L  N  G  L  P  *  G  H  S  G  F  I  K  F  *  E  L  N  K  F  F  K  K  F  W  *  W  D  C  S  V  Q  A  C  C  *  E  R  Y  G  Q  F  G  Q  Q  T  S  I  L  F  T  E  A  K  *  R  F  C  C  V  R  T   : A  Y  *  R  F  N </first_frame>
            <second_frame>  P  E  V  G  R  N  V  A  G  V  G  S  N  N  F  V  V  P  D  K  G  Y  S  Q  L  N  S  S  A  L  H  S  T  K  T  S  S  W  T  S  D  S  K  Y  D  G  F  S  F  D  A  R  S  S  S  S  Y  S  Q  M  S  P  P  T  A  G  A  T  G  R  R  T  P  S  F  L  D  S  M  N  I  S  K  V  S  A  A  S  P  P  S  I  G  S  V  T  T  D  T  Y  D  S  M  A  Y  P  R  D  T  L  G  L  S  S  S  E  N  L  T  N  S  S  K  N  S  G  N  G  T  V  L  Y  K  H  A  V  E  K  D  M  G  N  L  D  N  R  H  P  F  Y  S  Q  K  Q  N  E  D  F  A  A  L  E  Q  :  H  I  E  D  L   </second_frame>
            <third_frame>   L  K  L  G  E  M  L  L  V  W  D  L  I  I  L  *  C  L  I  K  D  T  A  S  *  T  A  L  L  F  T  Q  L  K  L  L  L  G  H  R  T  P  S  M  M  V  L  V  L  M  L  E  V  L  L  V  T  H  R  C  P  R  P  Q  L  G  R  L  G  G  E  L  P  L  S  L  I  P  *  T  F  Q  K  S  L  L  H  P  L  P  Q  S  D  Q  L  L  Q  T  H  M  T  Q  W  L  T  L  G  T  L  W  V  Y  Q  V  L  R  T  *  Q  I  L  Q  K  I  L  V  M  G  L  F  C  T  S  M  L  L  R  K  I  W  A  I  W  T  T  D  I  H  F  I  H  R  S  K  M  K  I  L  L  R  *  N  S :   I  L  K  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18970" stop="18482"/>
                    <exon start="17113" stop="17099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEVGRNVAGVGSNNFVVPDKGYSQLNSSALHSTKTSSWTSDSKYDGFSFDARSSSSYSQMSPPTAGATGRRTPSFLDSMNISKVSAASPPSIGSVTTDTYDSMAYPRDTLGLSSSENLTNSSKNSGNGTVLYKHAVEKDMGNLDNRHPFYSQKQNEDFAALEQHIEDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="29088" PGL_stop="27863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29088" e_stop="28561"/>
            <exon e_start="28011" e_stop="27983"/>
            <exon e_start="27915" e_stop="27863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.811"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29088" e_stop="28561" e_length="528"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28560" i_stop="28012" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="28011" e_stop="27983" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27982" i_stop="27916" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="0.811">
            <gDNA_exon_boundary e_start="27915" e_stop="27863" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29088" stop="28561"/>
              <exon start="28011" stop="27983"/>
              <exon start="27915" stop="27863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATAAAAAAATTGATTATAAGAATTTGAGTTCTCTTTCAATGGAAATTAGTTTTTCTTCCTTATTGTTTTTATCATTTTTGTTATTTTTTCATCAAACAAATGCTATTACTGTCCATATAGTTGATGGTATTGCAAAAAATGATCCCCAATTGATATTTCGCTGTAAATCTCATAAAGACGATCTCGGAACGCATCATCCCAAATTCAACGATGATTTTCATTTCTCGTTCAAAAAAGATTTTTTTTTCGAGACGGTGTTCTTTTGTCATTTCTGGTGGGGTAAAAAAAATATCTCATTTGAAGTGTATAGAGAAACTGGAGCTTGTGGGCATGAAACAGGAGGATCTAACAAAGGAATATGTTATTGGTTAGTTAAAGAAGACGGTTTTTATTTTGCTATCAATGACAATCCTCCTCCATCTTCTTTTGTTAGACAATTTGGTTGGTAAAAAAATTAATGTAATTTAATATTTGTTATCTAATTACATTATGAAATGAAAAAAGAAATTTATTATGACTATGACA : CAAAAAAAAAATAAAAAAAAAAAAAAAAA : AAAAACAAAAAAAAAAAAAAAAAACAAAAGAACAAAAAAAAAATATATATATT</gDNA_template>
            <first_frame> I  I  K  K  L  I  I  R  I  *  V  L  F  Q  W  K  L  V  F  L  P  Y  C  F  Y  H  F  C  Y  F  F  I  K  Q  M  L  L  L  S  I  *  L  M  V  L  Q  K  M  I  P  N  *  Y  F  A  V  N  L  I  K  T  I  S  E  R  I  I  P  N  S  T  M  I  F  I  S  R  S  K  K  I  F  F  S  R  R  C  S  F  V  I  S  G  G  V  K  K  I  S  H  L  K  C  I  E  K  L  E  L  V  G  M  K  Q  E  D  L  T  K  E  Y  V  I  G  *  L  K  K  T  V  F  I  L  L  S  M  T  I  L  L  H  L  L  L  L  D  N  L  V  G  K  K  I  N  V  I  *  Y  L  L  S  N  Y  I  M  K  *  K  K  K  F  I  M  T  M  T  :  Q  K  K  N  K  K  K  K  K  K :   K  T  K  K  K  K  K  N  K  R  T  K  K  K  Y  I  Y  </first_frame>
            <second_frame>  *  *  K  N  *  L  *  E  F  E  F  S  F  N  G  N  *  F  F  F  L  I  V  F  I  I  F  V  I  F  S  S  N  K  C  Y  Y  C  P  Y  S  *  W  Y  C  K  K  *  S  P  I  D  I  S  L  *  I  S  *  R  R  S  R  N  A  S  S  Q  I  Q  R  *  F  S  F  L  V  Q  K  R  F  F  F  R  D  G  V  L  L  S  F  L  V  G  *  K  K  Y  L  I  *  S  V  *  R  N  W  S  L  W  A  *  N  R  R  I  *  Q  R  N  M  L  L  V  S  *  R  R  R  F  L  F  C  Y  Q  *  Q  S  S  S  I  F  F  C  *  T  I  W  L  V  K  K  L  M  *  F  N  I  C  Y  L  I  T  L  *  N  E  K  R  N  L  L  *  L  *  H :   K  K  K  I  K  K  K  K  K   : K  K  Q  K  K  K  K  K  T  K  E  Q  K  K  N  I  Y  I </second_frame>
            <third_frame>   N  K  K  I  D  Y  K  N  L  S  S  L  S  M  E  I  S  F  S  S  L  L  F  L  S  F  L  L  F  F  H  Q  T  N  A  I  T  V  H  I  V  D  G  I  A  K  N  D  P  Q  L  I  F  R  C  K  S  H  K  D  D  L  G  T  H  H  P  K  F  N  D  D  F  H  F  S  F  K  K  D  F  F  F  E  T  V  F  F  C  H  F  W  W  G  K  K  N  I  S  F  E  V  Y  R  E  T  G  A  C  G  H  E  T  G  G  S  N  K  G  I  C  Y  W  L  V  K  E  D  G  F  Y  F  A  I  N  D  N  P  P  P  S  S  F  V  R  Q  F  G  W  *  K  N  *  C  N  L  I  F  V  I  *  L  H  Y  E  M  K  K  E  I  Y  Y  D  Y  D   : T  K  K  K  *  K  K  K  K  K  :  K  N  K  K  K  K  K  K  Q  K  N  K  K  K  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29086" stop="28637"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKKIDYKNLSSLSMEISFSSLLFLSFLLFFHQTNAITVHIVDGIAKNDPQLIFRCKSHKDDLGTHHPKFNDDFHFSFKKDFFFETVFFCHFWWGKKNISFEVYRETGACGHETGGSNKGICYWLVKEDGFYFAINDNPPPSSFVRQFGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48422" PGL_stop="35103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48422" e_stop="48109"/>
            <exon e_start="44716" e_stop="44645"/>
            <exon e_start="44541" e_stop="44053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.071" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48422" e_stop="48109" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.965">
            <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44716" e_stop="44645" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.071" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="44541" e_stop="44053" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48422" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48419" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48404" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48404" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48401" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48400" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48399" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48399" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48399" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48398" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48377" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48376" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48376" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48359" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48351" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48340" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48138" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48137" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48137" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48137" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTTTTCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG : GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG : ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAAATTAT</gDNA_template>
            <first_frame> A  V  F  F  S  I  E  S  P  S  L  *  P  C  K  A  A  Q  N  Y  S  V  P  A  Q  R  E  N  H  T  V  G  K  M  T  E  A  M  I  R  K  K  A  G  M  A  S  V  K  D  M  P  L  L  Q  D  G  P  P  P  G  G  F  A  P  V  R  F  A  R  R  I  P  N  T  G  P  S  A  M  A  I  F  L  T  A  F  G  V  F  S  W  G  M  Y  Q  V  G  V  G  N  K  K  R  R :   V  I  K  E  E  K  Y  A  A  R  R  A  I  L  P  M  L  Q  A  E  E  D  E  R :   F  V  K  E  W  K  K  Y  L  E  E  E  A  R  I  M  K  D  V  P  G  W  K  V  G  E  S  V  Y  N  S  G  K  W  M  P  P  A  T  G  E  L  R  P  D  V  W  *  E  M  L  V  K  L  P  G  H  A  A  R  K  T  G  S  C  Q  W  R  S  Y  F  L  S  D  F  F  P  H  W  N  K  I  V  S  A  K  S  V  Q  H  V  *  D  D  C  F  N  A  I  S  I  T  S  W  D  H  K  R  Q  C  N  F  M  F  L  L  *  L  I  Q  I  V  F  *  *  I  G  V  L  H  H  P  S  S  Q  C  V  F  I  Q  L  Q  Y  G  S  G  F  S  S  C  L  K  T  L  E  K  P  N  L  A  E  I   </first_frame>
            <second_frame>  Q  F  S  S  P  L  N  R  H  H  C  S  P  V  K  Q  L  K  I  T  V  F  R  H  R  G  K  I  T  L  *  E  K  *  R  R  Q  *  *  G  R  K  P  E  W  L  A  *  K  T  C  P  Y  C  K  M  V  H  H  Q  A  V  L  H  R  F  D  S  L  A  G  S  L  T  L  V  Q  V  L  W  L  F  S  L  L  L  L  V  F  S  H  G  V  C  T  K  S  A  *  E  I  R  S  E   : G  *  *  R  K  K  N  M  L  P  E  G  L  Y  Y  P  C  F  K  L  K  K  M  K   : D  L  L  K  S  G  R  S  I  L  K  K  R  R  E  S  *  R  M  F  P  V  G  K  L  V  K  V  F  T  T  L  G  N  G  C  L  Q  Q  L  E  S  F  V  L  M  S  G  K  R  C  W  *  S  F  Q  D  M  Q  H  E  K  L  V  H  V  S  G  G  H  T  F  F  R  I  S  F  L  I  G  I  K  L  Y  L  Q  N  L  C  N  M  F  K  M  I  A  L  T  L  L  A  L  R  V  G  I  I  R  D  N  A  T  S  C  F  S  Y  S  *  F  R  S  F  F  N  E  *  A  S  F  I  I  H  L  L  N  V  F  S  S  N  Y  N  M  E  V  A  F  P  V  A  S  K  H  *  R  S  Q  I  *  Q  K  L  </second_frame>
            <third_frame>   S  F  L  L  H  *  I  A  I  T  V  A  L  *  S  S  S  K  L  Q  C  S  G  T  E  G  K  S  H  C  R  K  N  D  G  G  N  D  K  E  E  S  R  N  G  *  R  E  R  H  A  L  I  A  R  W  S  T  T  R  R  F  C  T  G  S  I  R  S  P  D  P  *  H  W  S  K  C  Y  G  Y  F  P  Y  C  F  W  C  F  L  M  G  Y  V  P  S  R  R  R  K  *  E  A  K  :  G  D  K  G  R  K  I  C  C  P  K  G  Y  I  T  H  A  S  S  *  R  R  *  K  :  I  C  *  R  V  E  E  V  S  *  R  R  G  E  N  H  E  G  C  S  R  L  E  S  W  *  K  C  L  Q  L  W  E  M  D  A  S  S  N  W  R  A  S  S  *  C  L  V  R  D  A  G  K  A  S  R  T  C  S  T  K  N  W  F  M  S  V  E  V  I  L  S  F  G  F  L  S  S  L  E  *  N  C  I  C  K  I  C  A  T  C  L  R  *  L  L  *  R  Y  *  H  Y  E  L  G  S  *  E  T  M  Q  L  H  V  S  L  I  V  D  S  D  R  F  L  M  N  R  R  P  S  S  S  I  F  S  M  C  F  H  P  I  T  I  W  K  W  L  F  Q  L  P  Q  N  T  R  E  A  K  S  S  R  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48386" stop="48109"/>
                    <exon start="44716" stop="44645"/>
                    <exon start="44541" stop="44397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCKAAQNYSVPAQRENHTVGKMTEAMIRKKAGMASVKDMPLLQDGPPPGGFAPVRFARRIPNTGPSAMAIFLTAFGVFSWGMYQVGVGNKKRRVIKEEKYAARRAILPMLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVGESVYNSGKWMPPATGELRPDVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44383" stop="44186"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQDMQHEKLVHVSGGHTFFRISFLIGIKLYLQNLCNMFKMIALTLLALRVGIIRDNATSCFSYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48422" e_stop="48109"/>
            <exon e_start="44716" e_stop="44645"/>
            <exon e_start="44541" e_stop="44187"/>
            <exon e_start="40696" e_stop="40679"/>
            <exon e_start="39314" e_stop="39278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.071" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.081" e_score="0.997"/>
          <exon-intron don_prob="0.709" acc_prob="0.655" e_score="0.556"/>
          <exon-only e_score="0.730"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48422" e_stop="48109" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.965">
            <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44716" e_stop="44645" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.071" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="44541" e_stop="44187" e_length="355"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.081">
            <gDNA_intron_boundary i_start="44186" i_stop="40697" i_length="3490"/>
          </intron>
          <exon e_serial="4" e_score="0.556">
            <gDNA_exon_boundary e_start="40696" e_stop="40679" e_length="18"/>
          </exon>
          <intron i_serial="4" don_prob="0.709" acc_prob="0.655">
            <gDNA_intron_boundary i_start="40678" i_stop="39315" i_length="1364"/>
          </intron>
          <exon e_serial="5" e_score="0.730">
            <gDNA_exon_boundary e_start="39314" e_stop="39278" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48422" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48419" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48418" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44187"/>
              <exon start="40696" stop="40679"/>
              <exon start="39314" stop="39278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48404" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48404" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48401" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48400" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48399" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48398" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48377" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48376" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48376" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48359" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTTTTCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG : GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG : ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTG : GTTAAAAAAATAGCAGAG : ACATCAAAAATCAAAGATAAAATAAAAAATAAAAATA</gDNA_template>
            <first_frame> A  V  F  F  S  I  E  S  P  S  L  *  P  C  K  A  A  Q  N  Y  S  V  P  A  Q  R  E  N  H  T  V  G  K  M  T  E  A  M  I  R  K  K  A  G  M  A  S  V  K  D  M  P  L  L  Q  D  G  P  P  P  G  G  F  A  P  V  R  F  A  R  R  I  P  N  T  G  P  S  A  M  A  I  F  L  T  A  F  G  V  F  S  W  G  M  Y  Q  V  G  V  G  N  K  K  R  R :   V  I  K  E  E  K  Y  A  A  R  R  A  I  L  P  M  L  Q  A  E  E  D  E  R :   F  V  K  E  W  K  K  Y  L  E  E  E  A  R  I  M  K  D  V  P  G  W  K  V  G  E  S  V  Y  N  S  G  K  W  M  P  P  A  T  G  E  L  R  P  D  V  W  *  E  M  L  V  K  L  P  G  H  A  A  R  K  T  G  S  C  Q  W  R  S  Y  F  L  S  D  F  F  P  H  W  N  K  I  V  S  A  K  S  V  Q  H  V  *  D  D  C  F  N  A  I  S  I  T  S  W  D  H  K  R  Q  C  N  F  M  F  L  L  *  L  :  V  K  K  I  A  E  :  T  S  K  I  K  D  K  I  K  N  K  N  </first_frame>
            <second_frame>  Q  F  S  S  P  L  N  R  H  H  C  S  P  V  K  Q  L  K  I  T  V  F  R  H  R  G  K  I  T  L  *  E  K  *  R  R  Q  *  *  G  R  K  P  E  W  L  A  *  K  T  C  P  Y  C  K  M  V  H  H  Q  A  V  L  H  R  F  D  S  L  A  G  S  L  T  L  V  Q  V  L  W  L  F  S  L  L  L  L  V  F  S  H  G  V  C  T  K  S  A  *  E  I  R  S  E   : G  *  *  R  K  K  N  M  L  P  E  G  L  Y  Y  P  C  F  K  L  K  K  M  K   : D  L  L  K  S  G  R  S  I  L  K  K  R  R  E  S  *  R  M  F  P  V  G  K  L  V  K  V  F  T  T  L  G  N  G  C  L  Q  Q  L  E  S  F  V  L  M  S  G  K  R  C  W  *  S  F  Q  D  M  Q  H  E  K  L  V  H  V  S  G  G  H  T  F  F  R  I  S  F  L  I  G  I  K  L  Y  L  Q  N  L  C  N  M  F  K  M  I  A  L  T  L  L  A  L  R  V  G  I  I  R  D  N  A  T  S  C  F  S  Y  S  W :   L  K  K  *  Q  R :   H  Q  K  S  K  I  K  *  K  I  K  I </second_frame>
            <third_frame>   S  F  L  L  H  *  I  A  I  T  V  A  L  *  S  S  S  K  L  Q  C  S  G  T  E  G  K  S  H  C  R  K  N  D  G  G  N  D  K  E  E  S  R  N  G  *  R  E  R  H  A  L  I  A  R  W  S  T  T  R  R  F  C  T  G  S  I  R  S  P  D  P  *  H  W  S  K  C  Y  G  Y  F  P  Y  C  F  W  C  F  L  M  G  Y  V  P  S  R  R  R  K  *  E  A  K  :  G  D  K  G  R  K  I  C  C  P  K  G  Y  I  T  H  A  S  S  *  R  R  *  K  :  I  C  *  R  V  E  E  V  S  *  R  R  G  E  N  H  E  G  C  S  R  L  E  S  W  *  K  C  L  Q  L  W  E  M  D  A  S  S  N  W  R  A  S  S  *  C  L  V  R  D  A  G  K  A  S  R  T  C  S  T  K  N  W  F  M  S  V  E  V  I  L  S  F  G  F  L  S  S  L  E  *  N  C  I  C  K  I  C  A  T  C  L  R  *  L  L  *  R  Y  *  H  Y  E  L  G  S  *  E  T  M  Q  L  H  V  S  L  I  V   : G  *  K  N  S  R   : D  I  K  N  Q  R  *  N  K  K  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48386" stop="48109"/>
                    <exon start="44716" stop="44645"/>
                    <exon start="44541" stop="44397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCKAAQNYSVPAQRENHTVGKMTEAMIRKKAGMASVKDMPLLQDGPPPGGFAPVRFARRIPNTGPSAMAIFLTAFGVFSWGMYQVGVGNKKRRVIKEEKYAARRAILPMLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVGESVYNSGKWMPPATGELRPDVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44383" stop="44187"/>
                    <exon start="40696" stop="40684"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQDMQHEKLVHVSGGHTFFRISFLIGIKLYLQNLCNMFKMIALTLLALRVGIIRDNATSCFSYSWLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45687" e_stop="45672"/>
            <exon e_start="44716" e_stop="44645"/>
            <exon e_start="44541" e_stop="44150"/>
            <exon e_start="35586" e_stop="35556"/>
            <exon e_start="35157" e_stop="35103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.223" acc_prob="0.965" e_score="0.562"/>
          <exon-intron don_prob="0.071" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.562">
            <gDNA_exon_boundary e_start="45687" e_stop="45672" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.223" acc_prob="0.965">
            <gDNA_intron_boundary i_start="45671" i_stop="44717" i_length="955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44716" e_stop="44645" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.071" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44541" e_stop="44150" e_length="392"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44149" i_stop="35587" i_length="8563"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="35586" e_stop="35556" e_length="31"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35555" i_stop="35158" i_length="398"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35157" e_stop="35103" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45687" stop="45672"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44150"/>
              <exon start="35586" stop="35556"/>
              <exon start="35157" stop="35103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATAACCAGCTGGG : GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG : ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATC : AAAAACAAGAAAAAAAAAAAAAAAAAAAAAA : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> R  I  T  S  W   : G  *  *  R  K  K  N  M  L  P  E  G  L  Y  Y  P  C  F  K  L  K  K  M  K   : D  L  L  K  S  G  R  S  I  L  K  K  R  R  E  S  *  R  M  F  P  V  G  K  L  V  K  V  F  T  T  L  G  N  G  C  L  Q  Q  L  E  S  F  V  L  M  S  G  K  R  C  W  *  S  F  Q  D  M  Q  H  E  K  L  V  H  V  S  G  G  H  T  F  F  R  I  S  F  L  I  G  I  K  L  Y  L  Q  N  L  C  N  M  F  K  M  I  A  L  T  L  L  A  L  R  V  G  I  I  R  D  N  A  T  S  C  F  S  Y  S  *  F  R  S  F  F  N  E  *  A  S  F  I  :  K  N  K  K  K  K  K  K  K  K   : N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  E  *  P  A  G  :  G  D  K  G  R  K  I  C  C  P  K  G  Y  I  T  H  A  S  S  *  R  R  *  K  :  I  C  *  R  V  E  E  V  S  *  R  R  G  E  N  H  E  G  C  S  R  L  E  S  W  *  K  C  L  Q  L  W  E  M  D  A  S  S  N  W  R  A  S  S  *  C  L  V  R  D  A  G  K  A  S  R  T  C  S  T  K  N  W  F  M  S  V  E  V  I  L  S  F  G  F  L  S  S  L  E  *  N  C  I  C  K  I  C  A  T  C  L  R  *  L  L  *  R  Y  *  H  Y  E  L  G  S  *  E  T  M  Q  L  H  V  S  L  I  V  D  S  D  R  F  L  M  N  R  R  P  S  S :   K  T  R  K  K  K  K  K  K  K  :  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   N  N  Q  L  G :   V  I  K  E  E  K  Y  A  A  R  R  A  I  L  P  M  L  Q  A  E  E  D  E  R :   F  V  K  E  W  K  K  Y  L  E  E  E  A  R  I  M  K  D  V  P  G  W  K  V  G  E  S  V  Y  N  S  G  K  W  M  P  P  A  T  G  E  L  R  P  D  V  W  *  E  M  L  V  K  L  P  G  H  A  A  R  K  T  G  S  C  Q  W  R  S  Y  F  L  S  D  F  F  P  H  W  N  K  I  V  S  A  K  S  V  Q  H  V  *  D  D  C  F  N  A  I  S  I  T  S  W  D  H  K  R  Q  C  N  F  M  F  L  L  *  L  I  Q  I  V  F  *  *  I  G  V  L  H   : Q  K  Q  E  K  K  K  K  K  K  K :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45685" stop="45672"/>
                    <exon start="44716" stop="44645"/>
                    <exon start="44541" stop="44397"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNQLGVIKEEKYAARRAILPMLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVGESVYNSGKWMPPATGELRPDVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44383" stop="44186"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQDMQHEKLVHVSGGHTFFRISFLIGIKLYLQNLCNMFKMIALTLLALRVGIIRDNATSCFSYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39515" PGL_stop="39804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39515" e_stop="39804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39515" e_stop="39804" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39515" stop="39804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACACCCTTTTACTAATCACCTCCAATGACAGAAACCAGAACCTGCGAGTTTGGTCATATAAAGAAGACCACCATGAGTAGTGAAGATGGGGTTTCTGGGTTGCCCTGTTTTGGGGTTGAAGATGATAAAGGTGGAATCTTGGAAGATCGGTTTGCAGAAAAAGGGAAGAAGAAAAGGAGAATTTGTGAAATGGGTTGGTTGAGTGATCCATTAGTTGTTCTTGGGACAGATGTTATGTTGATGATTTTGAGCTGTCTAGACGCACGCAGCGTGGCACTGTGTCTCCT</gDNA_template>
            <first_frame> W  T  P  F  Y  *  S  P  P  M  T  E  T  R  T  C  E  F  G  H  I  K  K  T  T  M  S  S  E  D  G  V  S  G  L  P  C  F  G  V  E  D  D  K  G  G  I  L  E  D  R  F  A  E  K  G  K  K  K  R  R  I  C  E  M  G  W  L  S  D  P  L  V  V  L  G  T  D  V  M  L  M  I  L  S  C  L  D  A  R  S  V  A  L  C  L   </first_frame>
            <second_frame>  G  H  P  F  T  N  H  L  Q  *  Q  K  P  E  P  A  S  L  V  I  *  R  R  P  P  *  V  V  K  M  G  F  L  G  C  P  V  L  G  L  K  M  I  K  V  E  S  W  K  I  G  L  Q  K  K  G  R  R  K  G  E  F  V  K  W  V  G  *  V  I  H  *  L  F  L  G  Q  M  L  C  *  *  F  *  A  V  *  T  H  A  A  W  H  C  V  S  </second_frame>
            <third_frame>   D  T  L  L  L  I  T  S  N  D  R  N  Q  N  L  R  V  W  S  Y  K  E  D  H  H  E  *  *  R  W  G  F  W  V  A  L  F  W  G  *  R  *  *  R  W  N  L  G  R  S  V  C  R  K  R  E  E  E  K  E  N  L  *  N  G  L  V  E  *  S  I  S  C  S  W  D  R  C  Y  V  D  D  F  E  L  S  R  R  T  Q  R  G  T  V  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39533" stop="39802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPPMTETRTCEFGHIKKTTMSSEDGVSGLPCFGVEDDKGGILEDRFAEKGKKKRRICEMGWLSDPLVVLGTDVMLMILSCLDARSVALCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42808" PGL_stop="43777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42808" e_stop="43777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="42808" e_stop="43777" e_length="970"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42808" stop="43421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42808" stop="43421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42809" stop="43555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43377" stop="43777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGACAAGATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAACACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGACAAGGAAGGAAGATTGGAGCTGGGAGATCTCTAACAACTTTTGTACCTACAAGAGCATACCAGATGCTGATAAAAAAGATGGCACTGGACCTTTGTTTCTACTTCACTAGGCCTCTACAGTAGTTTCTACTTTGAAGCCAAACTATGGAGATGTTTGTTTGAATAATTGTAAGGCCTTTTGTAAAGTATATTTTGTTGATATTAATAAGTTTTGCAAGTTTTA</gDNA_template>
            <first_frame> A  L  S  T  H  I  N  H  A  W  L  Q  L  A  P  N  *  V  D  I  V  C  T  C  L  R  K  L  K  S  V  R  L  K  L  K  R  P  F  E  G  R  S  L  C  S  F  A  S  S  W  *  D  C  I  I  P  S  F  L  V  H  Y  V  *  L  F  V  L  H  W  S  V  S  *  S  F  C  Q  N  *  K  R  F  A  W  F  C  I  L  *  V  L  F  E  P  L  L  L  L  P  L  I  A  I  S  S  Q  F  N  A  S  G  F  N  K  A  L  I  G  N  *  R  K  E  E  K  F  F  G  L  T  R  E  *  K  K  R  S  E  A  D  F  P  L  S  F  R  *  F  P  S  *  D  N  K  D  K  T  *  S  L  Y  N  Y  N  L  Y  Y  L  C  G  R  I  L  R  R  L  L  S  T  G  E  C  S  I  P  T  G  M  E  L  D  V  P  C  A  V  I  F  F  Q  M  E  V  R  L  Q  N  Q  M  T  R  Y  G  V  V  M  N  L  A  T  P  *  *  L  A  C  L  Q  M  E  I  *  E  N  T  T  *  G  *  T  V  G  R  L  C  M  *  Q  G  R  K  I  G  A  G  R  S  L  T  T  F  V  P  T  R  A  Y  Q  M  L  I  K  K  M  A  L  D  L  C  F  Y  F  T  R  P  L  Q  *  F  L  L  *  S  Q  T  M  E  M  F  V  *  I  I  V  R  P  F  V  K  Y  I  L  L  I  L  I  S  F  A  S  F  </first_frame>
            <second_frame>  H  Y  P  P  I  *  I  M  H  G  C  S  S  H  Q  I  E  *  I  *  F  V  R  A  *  E  N  L  N  L  Y  D  *  S  *  N  V  R  L  R  V  G  L  C  V  A  L  Q  V  V  G  K  T  A  *  Y  L  H  F  L  F  I  M  F  N  F  L  F  F  T  G  Q  F  H  R  A  F  A  K  I  E  N  G  L  H  G  S  V  S  C  K  C  Y  L  N  H  F  C  C  C  L  *  L  L  F  L  H  S  L  M  H  L  D  S  I  K  L  *  L  E  T  R  G  R  K  R  S  F  L  V  *  Q  E  S  E  K  N  E  V  K  Q  I  S  L  F  P  F  A  S  F  R  H  R  I  T  K  I  K  H  N  P  C  I  T  T  T  Y  T  T  C  V  D  E  S  L  G  G  S  *  V  L  A  N  A  R  S  L  Q  E  W  N  W  T  S  P  A  P  L  F  S  S  R  W  K  S  D  C  R  T  R  *  Q  D  M  G  W  S  *  I  L  L  L  H  S  N  *  L  A  C  R  W  K  Y  K  R  T  L  R  E  D  K  P  L  A  A  Y  V  C  D  K  E  G  R  L  E  L  G  D  L  *  Q  L  L  Y  L  Q  E  H  T  R  C  *  *  K  R  W  H  W  T  F  V  S  T  S  L  G  L  Y  S  S  F  Y  F  E  A  K  L  W  R  C  L  F  E  *  L  *  G  L  L  *  S  I  F  C  *  Y  *  *  V  L  Q  V  L </second_frame>
            <third_frame>   I  I  H  P  Y  K  S  C  M  A  A  A  R  T  K  L  S  R  Y  S  L  Y  V  L  E  K  T  *  I  C  T  I  E  V  K  T  S  V  *  G  S  V  F  V  *  L  C  K  *  L  V  R  L  H  N  T  F  I  S  C  S  L  C  L  T  F  C  S  S  L  V  S  F  I  E  L  L  P  K  L  K  T  V  C  M  V  L  Y  P  V  S  A  I  *  T  T  S  A  A  A  F  D  C  Y  F  F  T  V  *  C  I  W  I  Q  *  S  F  D  W  K  L  E  E  G  R  E  V  F  W  F  D  K  R  V  K  K  T  K  *  S  R  F  P  S  F  L  S  L  V  S  V  I  G  *  Q  R  *  N  I  I  L  V  *  L  Q  P  I  L  L  V  W  T  N  P  *  A  A  P  E  Y  W  R  M  L  D  P  Y  R  N  G  T  G  R  P  L  R  R  Y  F  L  P  D  G  S  Q  T  A  E  P  D  D  K  I  W  G  G  H  E  S  C  Y  S  I  V  T  S  L  L  A  D  G  N  I  R  E  H  Y  V  R  I  N  R  W  P  P  M  Y  V  T  R  K  E  D  W  S  W  E  I  S  N  N  F  C  T  Y  K  S  I  P  D  A  D  K  K  D  G  T  G  P  L  F  L  L  H  *  A  S  T  V  V  S  T  L  K  P  N  Y  G  D  V  C  L  N  N  C  K  A  F  C  K  V  Y  F  V  D  I  N  K  F  C  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43335" stop="43664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAPEYWRMLDPYRNGTGRPLRRYFLPDGSQTAEPDDKIWGGHESCYSIVTSLLADGNIREHYVRINRWPPMYVTRKEDWSWEISNNFCTYKSIPDADKKDGTGPLFLLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49605" PGL_stop="56322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49778" e_stop="49942"/>
            <exon e_start="50050" e_stop="50074"/>
            <exon e_start="50159" e_stop="50290"/>
            <exon e_start="51432" e_stop="51591"/>
            <exon e_start="51718" e_stop="51893"/>
            <exon e_start="52235" e_stop="52330"/>
            <exon e_start="52704" e_stop="52808"/>
            <exon e_start="52931" e_stop="53017"/>
            <exon e_start="53111" e_stop="53200"/>
            <exon e_start="53289" e_stop="53369"/>
            <exon e_start="53460" e_stop="53528"/>
            <exon e_start="53724" e_stop="53801"/>
            <exon e_start="53893" e_stop="53988"/>
            <exon e_start="54128" e_stop="54227"/>
            <exon e_start="54308" e_stop="54411"/>
            <exon e_start="54530" e_stop="54714"/>
            <exon e_start="54819" e_stop="55168"/>
            <exon e_start="56307" e_stop="56322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.310" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.418" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.632" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.741" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="49778" e_stop="49942" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50050" e_stop="50074" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.310" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50159" e_stop="50290" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51432" e_stop="51591" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51718" e_stop="51893" e_length="176"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52235" e_stop="52330" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52704" e_stop="52808" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.418" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52931" e_stop="53017" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53018" i_stop="53110" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53111" e_stop="53200" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53289" e_stop="53369" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.796" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="53460" e_stop="53528" e_length="69"/>
          </exon>
          <intron i_serial="11" don_prob="0.956" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="53724" e_stop="53801" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53988" e_length="96"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="54128" e_stop="54227" e_length="100"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="54308" e_stop="54411" e_length="104"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="54530" e_stop="54714" e_length="185"/>
          </exon>
          <intron i_serial="16" don_prob="0.999" acc_prob="0.632">
            <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="54819" e_stop="55168" e_length="350"/>
          </exon>
          <intron i_serial="17" don_prob="0.000" acc_prob="0.741">
            <gDNA_intron_boundary i_start="55169" i_stop="56306" i_length="1138"/>
          </intron>
          <exon e_serial="18" e_score="0.625">
            <gDNA_exon_boundary e_start="56307" e_stop="56322" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49778" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51893"/>
              <exon start="52235" stop="52330"/>
              <exon start="52704" stop="52808"/>
              <exon start="52931" stop="53017"/>
              <exon start="53111" stop="53200"/>
              <exon start="53289" stop="53369"/>
              <exon start="53460" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53988"/>
              <exon start="54128" stop="54227"/>
              <exon start="54308" stop="54411"/>
              <exon start="54530" stop="54714"/>
              <exon start="54819" stop="55168"/>
              <exon start="56307" stop="56322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49787" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51893"/>
              <exon start="52235" stop="52330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49791" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49817" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49855" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49869" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51893"/>
              <exon start="52235" stop="52330"/>
              <exon start="52704" stop="52808"/>
              <exon start="52931" stop="53014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49870" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49907" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49907" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51591"/>
              <exon start="51718" stop="51893"/>
              <exon start="52235" stop="52330"/>
              <exon start="52704" stop="52808"/>
              <exon start="52931" stop="53017"/>
              <exon start="53111" stop="53200"/>
              <exon start="53289" stop="53326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51797" stop="51893"/>
              <exon start="52235" stop="52330"/>
              <exon start="52704" stop="52808"/>
              <exon start="52931" stop="53017"/>
              <exon start="53111" stop="53200"/>
              <exon start="53289" stop="53369"/>
              <exon start="53460" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53512" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53988"/>
              <exon start="54128" stop="54227"/>
              <exon start="54308" stop="54411"/>
              <exon start="54530" stop="54552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54392" stop="54411"/>
              <exon start="54530" stop="54714"/>
              <exon start="54819" stop="55167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54820" stop="55140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGATCTTCTAGGCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG : TGTTGCAAGAACCAGTTCCCAAAAG : ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG : GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG : GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG : GTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA : GACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT : GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAG : AGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAG : GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAA : GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG : GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG : ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG : ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG : GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG : ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG : TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGTG : TATAAAAACCATCTAA</gDNA_template>
            <first_frame> W  D  L  L  G  P  S  S  L  N  *  I  P  L  K  L  L  L  H  P  H  F  S  L  C  T  S  K  S  L  S  T  F  T  F  S  S  I  S  Q  L  Q  N  V  S  F  C  S  K  S  C  F  *  S  Q  :  C  C  K  N  Q  F  P  K   : D  W  W  E  V  E  L  E  *  K  L  C  C  K  G  Y  Q  I  W  S  *  S  *  S  F  D  A  S  R  C  *  A  A  C  *  C  C  *  S  H  Y  G  S  K   : G  A  *  C  G  D  *  T  K  L  G  C  T  Q  S  D  K  R  W  R  D  C  C  K  K  Y  *  I  Q  G  Q  D  T  K  C  W  C  *  P  C  K  T  S  R  Q  C  N  K  *  C  C  W  *  W :   Y  H  L  C  N  S  S  H  P  S  N  I  C  *  R  M  Q  V  S  G  S  W  Y  E  C  N  G  P  *  T  G  Y  Y  H  G  C  R  F  C  C  D  K  P  E  K  Q  S  T  D  D  Q  Y  I  *  G  N  C  T   : G  W  D  Y  L  C  K  R  R  K  S  N  W  R  P  H  C  K  G  N  G  E  S  R  Q  G  G  S  H  H  Y  S   : R  R  E  D  I  A  Q  *  V  G  C  C  *  R  D  E  V  G  *  R  L  H  I  T  I  L  H  H  K  S  E  E  S  E  M   : *  T  G  *  P  T  N  S  D  S  *  E  K  D  L  K  H  *  C  C  C  E  S  I  G  V  S  S  E   : E  T  K  A  P  L  N  C  G  *  R  C  G  Q  *  S  T  R  H  S  Y  F  E  Q  T  P  C  W  N  Q   : G  L  C  H  Q  S  T  R  L  W  *  K  Q  E  S  L  F  A  R  S  C  Y  F  N  W  R  P   : S  H  N  R  R  A  W  T  E  H  *  K  F  G  V  R  D  A  G  N  K  *  R   : G  N  Y  L  *  G  *  Y  C  H  S  *  W  C  W  *  E  E  V  H  R  G  T  M  R  T   : D  *  I  N  H  *  T  E  H  I  *  L  *  Q  G  E  V  A  G  K  T  S  *  A  F  R  G  C  C  C  V  K   : D  W  R  S  Q  *  S  *  G  W  *  K  E  R  *  S  N  *  C  F  E  R  H  K  G  C  S  G  G  R  N  C  S  R :   W  W  C  C  S  S  L  C  S  K  R  I  G  *  F  D  N  S  Q  L  *  P  E  D  W  C  T  N  Y  S  E  C  S  E   : D  A  S  T  Y  N  S  L  *  R  R  S  R  G  C  C  R  G  W  Q  I  V  G  S  G  Q  P  *  S  W  I  *  C  G  Q  G  *  I  C  R  Y  D  K  G  R  N  H  R  S  S  E  S  D  Q  D  S  F  G  R  C  C  Q  :  C  L  V  S  F  D  H  N  *  S  S  C  C  R  A  S  *  G  R  E  G  I  S  C  N  G  W  R  Y  G  W  W  Y  G  W  H  G  L  L  I  E  K  P  K  T  V  I  A  A  A  *  H  I  W  F  I  E  Q  S  K  K  I  N  L  D  L  F  P  I  L  M  N  L  F  T  I  E  N  A  P  I  V  S  I  A  R  E  T  R  P  L  *  I  H  V  F  V  G  S  K  F  V  V  F  I  *  I  R  S  L  N  I  G  P  F  Q  C :   I  K  T  I  * </first_frame>
            <second_frame>  G  I  F  *  A  L  L  H  *  I  K  Y  L  *  S  F  F  F  I  P  T  S  L  F  V  L  Q  N  P  F  P  L  S  L  S  A  A  F  L  S  F  K  M  Y  R  F  A  A  N  L  A  S  K  A  S :   V  A  R  T  S  S  Q  K  :  I  G  G  R  L  N  W  S  R  N  Y  A  A  K  D  I  R  F  G  V  E  A  R  A  L  M  L  Q  G  V  E  Q  L  A  D  A  V  K  V  T  M  G  P  K  :  G  R  N  V  V  I  E  Q  S  W  G  A  P  K  V  T  K  D  G  V  T  V  A  K  S  I  E  F  K  D  K  I  Q  N  V  G  A  S  L  V  K  Q  V  A  N  A  T  N  D  V  A  G  D   : G  T  T  C  A  T  V  L  T  R  A  I  F  A  E  G  C  K  S  V  A  A  G  M  N  A  M  D  L  R  R  G  I  T  M  A  V  D  S  V  V  T  N  L  K  S  R  A  R  M  I  S  T  S  E  E  I  A  Q  :  V  G  T  I  S  A  N  G  E  R  V  I  G  D  L  I  A  R  A  M  E  K  V  G  K  E  G  V  I  T  I  Q  :  D  G  K  T  L  L  N  E  L  D  V  V  E  G  M  K  L  D  R  G  Y  I  S  P  Y  F  I  T  N  Q  K  N  Q  K  C  :  E  L  D  N  P  L  I  L  I  H  E  K  K  I  S  S  I  N  A  V  V  K  A  L  E  L  A  L  K  :  R  Q  R  P  L  L  I  V  A  E  D  V  D  N  E  A  L  A  T  L  I  L  N  K  L  R  A  G  I  K  :  V  C  A  I  K  A  P  G  F  G  E  N  R  K  A  Y  L  Q  D  L  A  I  L  T  G  G  Q  :  V  I  T  E  E  L  G  L  N  I  E  N  L  E  F  E  M  L  G  T  S  K  E  :  A  T  I  S  K  D  D  T  V  I  L  D  G  A  G  E  K  K  S  I  E  E  R  C  E  L  :  I  R  S  T  I  E  Q  S  T  S  D  Y  D  K  E  K  L  Q  E  R  L  A  K  L  S  G  G  V  A  V  L  K  :  I  G  G  A  S  E  A  E  V  G  E  K  K  D  R  V  T  D  A  L  N  A  T  K  A  A  V  E  E  G  I  V  P   : G  G  G  V  A  L  L  Y  A  A  R  E  L  D  N  L  T  T  A  N  F  D  Q  K  I  G  V  Q  I  I  Q  N  A  L  K  :  T  P  V  H  T  I  A  S  N  A  G  V  E  G  A  V  V  V  G  K  L  L  D  Q  D  N  L  D  L  G  Y  D  A  A  K  G  E  Y  V  D  M  I  K  A  G  I  I  D  P  V  K  V  I  R  T  A  L  V  D  A  A  S :   V  S  S  L  L  T  T  T  E  A  V  V  V  E  L  P  K  D  E  K  E  S  P  A  M  G  G  G  M  G  G  G  M  G  G  M  D  F  *  L  K  S  Q  K  Q  *  L  Q  L  L  D  T  F  G  L  *  N  K  A  K  K  *  I  *  I  Y  F  L  F  *  *  I  F  L  R  *  K  T  R  L  L  Y  Q  *  Q  E  R  Q  D  H  C  E  F  M  F  L  *  V  Q  N  L  *  S  S  F  E  Y  A  A  *  I  *  V  H  F  S   : V  *  K  P  S   </second_frame>
            <third_frame>   G  S  S  R  P  F  F  T  K  L  N  T  F  E  A  S  S  S  S  P  L  L  S  L  Y  F  K  I  P  F  H  F  H  F  Q  Q  H  F  S  A  S  K  C  I  V  L  Q  Q  I  L  L  L  K  P   : V  L  Q  E  P  V  P  K  R :   L  V  G  G  *  I  G  V  E  T  M  L  Q  R  I  S  D  L  E  L  K  L  E  L  *  C  F  K  V  L  S  S  L  L  M  L  L  K  S  L  W  V  Q  R :   G  V  M  W  *  L  N  K  V  G  V  H  P  K  *  Q  K  M  A  *  L  L  Q  K  V  L  N  S  R  T  R  Y  K  M  L  V  L  A  L  *  N  K  S  P  M  Q  Q  M  M  L  L  V  M  :  V  P  L  V  Q  Q  F  S  P  E  Q  Y  L  L  K  D  A  S  Q  W  Q  L  V  *  M  Q  W  T  L  D  G  V  L  P  W  L  *  I  L  L  *  Q  T  *  K  A  E  H  G  *  S  V  H  L  R  K  L  H  R :   L  G  L  S  L  Q  T  E  K  E  *  L  A  T  S  L  Q  G  Q  W  R  K  *  A  R  R  E  S  S  L  F  K :   T  G  R  H  C  S  M  S  W  M  L  L  K  G  *  S  W  I  E  V  T  Y  H  H  T  S  S  Q  I  R  R  I  R  N  V :   N  W  I  T  H  *  F  *  F  M  R  K  R  S  Q  A  L  M  L  L  *  K  H  W  S  *  L  *  R :   D  K  G  P  S  *  L  W  L  K  M  W  T  M  K  H  S  P  L  L  F  *  T  N  S  V  L  E  S  R :   F  V  P  S  K  H  Q  A  L  V  K  T  G  K  L  I  C  K  I  L  L  F  *  L  E  A  K :   S  *  Q  K  S  L  D  *  T  L  K  I  W  S  S  R  C  W  E  Q  V  K  R :   Q  L  S  L  R  M  I  L  S  F  L  M  V  L  V  R  R  S  P  S  R  N  D  A  N  * :   L  D  Q  P  L  N  R  A  H  L  T  M  T  R  R  S  C  R  K  D  *  L  S  F  Q  G  V  L  L  C  *  R :   L  E  E  P  V  K  L  R  L  V  K  R  K  I  E  *  L  M  L  *  T  P  Q  R  L  Q  W  R  K  E  L  F  Q  :  V  V  V  L  L  F  F  M  Q  Q  E  N  W  I  I  *  Q  Q  P  T  L  T  R  R  L  V  Y  K  L  F  R  M  L  *  R :   R  Q  Y  I  Q  *  P  L  T  Q  E  *  R  V  L  S  W  L  A  N  C  W  I  R  T  T  L  I  L  D  M  M  R  P  R  V  N  M  *  I  *  *  R  Q  E  S  S  I  Q  *  K  *  S  G  Q  L  W  S  M  L  P   : V  S  R  L  F  *  P  Q  L  K  Q  L  L  S  S  F  L  R  T  R  R  N  L  L  Q  W  V  A  V  W  V  V  V  W  V  A  W  T  S  D  *  K  A  K  N  S  N  C  S  C  L  T  H  L  V  Y  R  T  K  Q  K  N  K  F  R  F  I  S  Y  F  D  E  S  F  Y  D  R  K  R  A  Y  C  I  N  S  K  R  D  K  T  I  V  N  S  C  F  C  R  F  K  I  C  S  L  H  L  N  T  Q  L  K  Y  R  S  I  S  V  :  Y  K  N  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49821" stop="49942"/>
                    <exon start="50050" stop="50074"/>
                    <exon start="50159" stop="50290"/>
                    <exon start="51432" stop="51591"/>
                    <exon start="51718" stop="51893"/>
                    <exon start="52235" stop="52330"/>
                    <exon start="52704" stop="52808"/>
                    <exon start="52931" stop="53017"/>
                    <exon start="53111" stop="53200"/>
                    <exon start="53289" stop="53369"/>
                    <exon start="53460" stop="53528"/>
                    <exon start="53724" stop="53801"/>
                    <exon start="53893" stop="53988"/>
                    <exon start="54128" stop="54227"/>
                    <exon start="54308" stop="54411"/>
                    <exon start="54530" stop="54714"/>
                    <exon start="54819" stop="54936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1821</number_coding_nucleotides>
                  <number_encoded_amino_acids>607</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFIPTSLFVLQNPFPLSLSAAFLSFKMYRFAANLASKASVARTSSQKIGGRLNWSRNYAAKDIRFGVEARALMLQGVEQLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIQNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGITMAVDSVVTNLKSRARMISTSEEIAQVGTISANGERVIGDLIARAMEKVGKEGVITIQDGKTLLNELDVVEGMKLDRGYISPYFITNQKNQKCELDNPLILIHEKKISSINAVVKALELALKRQRPLLIVAEDVDNEALATLILNKLRAGIKVCAIKAPGFGENRKAYLQDLAILTGGQVITEELGLNIENLEFEMLGTSKEATISKDDTVILDGAGEKKSIEERCELIRSTIEQSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAARELDNLTTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLDQDNLDLGYDAAKGEYVDMIKAGIIDPVKVIRTALVDAASVSSLLTTTEAVVVELPKDEKESPAMGGGMGGGMGGMDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54941" stop="55168"/>
                    <exon start="56307" stop="56321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAKNSNCSCLTHLVYRTKQKNKFRFISYFDESFYDRKRAYCINSKRDKTIVNSCFCRFKICSLHLNTQLKYRSISVYKNHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49605" e_stop="49620"/>
            <exon e_start="49905" e_stop="49942"/>
            <exon e_start="50050" e_stop="50074"/>
            <exon e_start="50159" e_stop="50290"/>
            <exon e_start="51432" e_stop="51591"/>
            <exon e_start="51718" e_stop="51893"/>
            <exon e_start="52235" e_stop="52330"/>
            <exon e_start="52704" e_stop="52808"/>
            <exon e_start="52931" e_stop="53017"/>
            <exon e_start="53111" e_stop="53200"/>
            <exon e_start="53289" e_stop="53369"/>
            <exon e_start="53460" e_stop="53528"/>
            <exon e_start="53724" e_stop="53801"/>
            <exon e_start="53893" e_stop="53988"/>
            <exon e_start="54128" e_stop="54227"/>
            <exon e_start="54308" e_stop="54411"/>
            <exon e_start="54530" e_stop="54714"/>
            <exon e_start="54819" e_stop="55167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.000" e_score="0.812"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.947"/>
          <exon-intron don_prob="0.310" acc_prob="0.999" e_score="0.800"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.902"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="0.913"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.969"/>
          <exon-intron don_prob="0.418" acc_prob="0.997" e_score="0.971"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.956"/>
          <exon-intron don_prob="0.796" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.632" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.812">
            <gDNA_exon_boundary e_start="49605" e_stop="49620" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49621" i_stop="49904" i_length="284"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="49905" e_stop="49942" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="50050" e_stop="50074" e_length="25"/>
          </exon>
          <intron i_serial="3" don_prob="0.310" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.902">
            <gDNA_exon_boundary e_start="50159" e_stop="50290" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141"/>
          </intron>
          <exon e_serial="5" e_score="0.913">
            <gDNA_exon_boundary e_start="51432" e_stop="51591" e_length="160"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="51718" e_stop="51893" e_length="176"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="52235" e_stop="52330" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373"/>
          </intron>
          <exon e_serial="8" e_score="0.971">
            <gDNA_exon_boundary e_start="52704" e_stop="52808" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.418" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="52931" e_stop="53017" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53018" i_stop="53110" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="0.956">
            <gDNA_exon_boundary e_start="53111" e_stop="53200" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="53289" e_stop="53369" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.796" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="0.986">
            <gDNA_exon_boundary e_start="53460" e_stop="53528" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.956" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195"/>
          </intron>
          <exon e_serial="13" e_score="0.962">
            <gDNA_exon_boundary e_start="53724" e_stop="53801" e_length="78"/>
          </exon>
          <intron i_serial="13" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53988" e_length="96"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139"/>
          </intron>
          <exon e_serial="15" e_score="0.980">
            <gDNA_exon_boundary e_start="54128" e_stop="54227" e_length="100"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="54308" e_stop="54411" e_length="104"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="54530" e_stop="54714" e_length="185"/>
          </exon>
          <intron i_serial="17" don_prob="0.999" acc_prob="0.632">
            <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="54819" e_stop="55167" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49605" stop="49620"/>
              <exon start="49905" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49907" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49907" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51591"/>
              <exon start="51718" stop="51893"/>
              <exon start="52235" stop="52330"/>
              <exon start="52704" stop="52808"/>
              <exon start="52931" stop="53017"/>
              <exon start="53111" stop="53200"/>
              <exon start="53289" stop="53326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51797" stop="51893"/>
              <exon start="52235" stop="52330"/>
              <exon start="52704" stop="52808"/>
              <exon start="52931" stop="53017"/>
              <exon start="53111" stop="53200"/>
              <exon start="53289" stop="53369"/>
              <exon start="53460" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53512" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53988"/>
              <exon start="54128" stop="54227"/>
              <exon start="54308" stop="54411"/>
              <exon start="54530" stop="54552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54392" stop="54411"/>
              <exon start="54530" stop="54714"/>
              <exon start="54819" stop="55167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54820" stop="55140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTTCTAATGTT : ATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG : TGTTGCAAGAACCAGTTCCCAAAAG : ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG : GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG : GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG : GTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA : GACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT : GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAG : AGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAG : GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAA : GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG : GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG : ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG : ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG : GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG : ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG : TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGT</gDNA_template>
            <first_frame> F  F  F  *  C   : Y  V  S  F  C  S  K  S  C  F  *  S  Q  :  C  C  K  N  Q  F  P  K   : D  W  W  E  V  E  L  E  *  K  L  C  C  K  G  Y  Q  I  W  S  *  S  *  S  F  D  A  S  R  C  *  A  A  C  *  C  C  *  S  H  Y  G  S  K   : G  A  *  C  G  D  *  T  K  L  G  C  T  Q  S  D  K  R  W  R  D  C  C  K  K  Y  *  I  Q  G  Q  D  T  K  C  W  C  *  P  C  K  T  S  R  Q  C  N  K  *  C  C  W  *  W :   Y  H  L  C  N  S  S  H  P  S  N  I  C  *  R  M  Q  V  S  G  S  W  Y  E  C  N  G  P  *  T  G  Y  Y  H  G  C  R  F  C  C  D  K  P  E  K  Q  S  T  D  D  Q  Y  I  *  G  N  C  T   : G  W  D  Y  L  C  K  R  R  K  S  N  W  R  P  H  C  K  G  N  G  E  S  R  Q  G  G  S  H  H  Y  S   : R  R  E  D  I  A  Q  *  V  G  C  C  *  R  D  E  V  G  *  R  L  H  I  T  I  L  H  H  K  S  E  E  S  E  M   : *  T  G  *  P  T  N  S  D  S  *  E  K  D  L  K  H  *  C  C  C  E  S  I  G  V  S  S  E   : E  T  K  A  P  L  N  C  G  *  R  C  G  Q  *  S  T  R  H  S  Y  F  E  Q  T  P  C  W  N  Q   : G  L  C  H  Q  S  T  R  L  W  *  K  Q  E  S  L  F  A  R  S  C  Y  F  N  W  R  P   : S  H  N  R  R  A  W  T  E  H  *  K  F  G  V  R  D  A  G  N  K  *  R   : G  N  Y  L  *  G  *  Y  C  H  S  *  W  C  W  *  E  E  V  H  R  G  T  M  R  T   : D  *  I  N  H  *  T  E  H  I  *  L  *  Q  G  E  V  A  G  K  T  S  *  A  F  R  G  C  C  C  V  K   : D  W  R  S  Q  *  S  *  G  W  *  K  E  R  *  S  N  *  C  F  E  R  H  K  G  C  S  G  G  R  N  C  S  R :   W  W  C  C  S  S  L  C  S  K  R  I  G  *  F  D  N  S  Q  L  *  P  E  D  W  C  T  N  Y  S  E  C  S  E   : D  A  S  T  Y  N  S  L  *  R  R  S  R  G  C  C  R  G  W  Q  I  V  G  S  G  Q  P  *  S  W  I  *  C  G  Q  G  *  I  C  R  Y  D  K  G  R  N  H  R  S  S  E  S  D  Q  D  S  F  G  R  C  C  Q  :  C  L  V  S  F  D  H  N  *  S  S  C  C  R  A  S  *  G  R  E  G  I  S  C  N  G  W  R  Y  G  W  W  Y  G  W  H  G  L  L  I  E  K  P  K  T  V  I  A  A  A  *  H  I  W  F  I  E  Q  S  K  K  I  N  L  D  L  F  P  I  L  M  N  L  F  T  I  E  N  A  P  I  V  S  I  A  R  E  T  R  P  L  *  I  H  V  F  V  G  S  K  F  V  V  F  I  *  I  R  S  L  N  I  G  P  F  Q  </first_frame>
            <second_frame>  F  S  S  N  V  :  M  Y  R  F  A  A  N  L  A  S  K  A  S :   V  A  R  T  S  S  Q  K  :  I  G  G  R  L  N  W  S  R  N  Y  A  A  K  D  I  R  F  G  V  E  A  R  A  L  M  L  Q  G  V  E  Q  L  A  D  A  V  K  V  T  M  G  P  K  :  G  R  N  V  V  I  E  Q  S  W  G  A  P  K  V  T  K  D  G  V  T  V  A  K  S  I  E  F  K  D  K  I  Q  N  V  G  A  S  L  V  K  Q  V  A  N  A  T  N  D  V  A  G  D   : G  T  T  C  A  T  V  L  T  R  A  I  F  A  E  G  C  K  S  V  A  A  G  M  N  A  M  D  L  R  R  G  I  T  M  A  V  D  S  V  V  T  N  L  K  S  R  A  R  M  I  S  T  S  E  E  I  A  Q  :  V  G  T  I  S  A  N  G  E  R  V  I  G  D  L  I  A  R  A  M  E  K  V  G  K  E  G  V  I  T  I  Q  :  D  G  K  T  L  L  N  E  L  D  V  V  E  G  M  K  L  D  R  G  Y  I  S  P  Y  F  I  T  N  Q  K  N  Q  K  C  :  E  L  D  N  P  L  I  L  I  H  E  K  K  I  S  S  I  N  A  V  V  K  A  L  E  L  A  L  K  :  R  Q  R  P  L  L  I  V  A  E  D  V  D  N  E  A  L  A  T  L  I  L  N  K  L  R  A  G  I  K  :  V  C  A  I  K  A  P  G  F  G  E  N  R  K  A  Y  L  Q  D  L  A  I  L  T  G  G  Q  :  V  I  T  E  E  L  G  L  N  I  E  N  L  E  F  E  M  L  G  T  S  K  E  :  A  T  I  S  K  D  D  T  V  I  L  D  G  A  G  E  K  K  S  I  E  E  R  C  E  L  :  I  R  S  T  I  E  Q  S  T  S  D  Y  D  K  E  K  L  Q  E  R  L  A  K  L  S  G  G  V  A  V  L  K  :  I  G  G  A  S  E  A  E  V  G  E  K  K  D  R  V  T  D  A  L  N  A  T  K  A  A  V  E  E  G  I  V  P   : G  G  G  V  A  L  L  Y  A  A  R  E  L  D  N  L  T  T  A  N  F  D  Q  K  I  G  V  Q  I  I  Q  N  A  L  K  :  T  P  V  H  T  I  A  S  N  A  G  V  E  G  A  V  V  V  G  K  L  L  D  Q  D  N  L  D  L  G  Y  D  A  A  K  G  E  Y  V  D  M  I  K  A  G  I  I  D  P  V  K  V  I  R  T  A  L  V  D  A  A  S :   V  S  S  L  L  T  T  T  E  A  V  V  V  E  L  P  K  D  E  K  E  S  P  A  M  G  G  G  M  G  G  G  M  G  G  M  D  F  *  L  K  S  Q  K  Q  *  L  Q  L  L  D  T  F  G  L  *  N  K  A  K  K  *  I  *  I  Y  F  L  F  *  *  I  F  L  R  *  K  T  R  L  L  Y  Q  *  Q  E  R  Q  D  H  C  E  F  M  F  L  *  V  Q  N  L  *  S  S  F  E  Y  A  A  *  I  *  V  H  F  S </second_frame>
            <third_frame>   F  L  L  M  L :   C  I  V  L  Q  Q  I  L  L  L  K  P   : V  L  Q  E  P  V  P  K  R :   L  V  G  G  *  I  G  V  E  T  M  L  Q  R  I  S  D  L  E  L  K  L  E  L  *  C  F  K  V  L  S  S  L  L  M  L  L  K  S  L  W  V  Q  R :   G  V  M  W  *  L  N  K  V  G  V  H  P  K  *  Q  K  M  A  *  L  L  Q  K  V  L  N  S  R  T  R  Y  K  M  L  V  L  A  L  *  N  K  S  P  M  Q  Q  M  M  L  L  V  M  :  V  P  L  V  Q  Q  F  S  P  E  Q  Y  L  L  K  D  A  S  Q  W  Q  L  V  *  M  Q  W  T  L  D  G  V  L  P  W  L  *  I  L  L  *  Q  T  *  K  A  E  H  G  *  S  V  H  L  R  K  L  H  R :   L  G  L  S  L  Q  T  E  K  E  *  L  A  T  S  L  Q  G  Q  W  R  K  *  A  R  R  E  S  S  L  F  K :   T  G  R  H  C  S  M  S  W  M  L  L  K  G  *  S  W  I  E  V  T  Y  H  H  T  S  S  Q  I  R  R  I  R  N  V :   N  W  I  T  H  *  F  *  F  M  R  K  R  S  Q  A  L  M  L  L  *  K  H  W  S  *  L  *  R :   D  K  G  P  S  *  L  W  L  K  M  W  T  M  K  H  S  P  L  L  F  *  T  N  S  V  L  E  S  R :   F  V  P  S  K  H  Q  A  L  V  K  T  G  K  L  I  C  K  I  L  L  F  *  L  E  A  K :   S  *  Q  K  S  L  D  *  T  L  K  I  W  S  S  R  C  W  E  Q  V  K  R :   Q  L  S  L  R  M  I  L  S  F  L  M  V  L  V  R  R  S  P  S  R  N  D  A  N  * :   L  D  Q  P  L  N  R  A  H  L  T  M  T  R  R  S  C  R  K  D  *  L  S  F  Q  G  V  L  L  C  *  R :   L  E  E  P  V  K  L  R  L  V  K  R  K  I  E  *  L  M  L  *  T  P  Q  R  L  Q  W  R  K  E  L  F  Q  :  V  V  V  L  L  F  F  M  Q  Q  E  N  W  I  I  *  Q  Q  P  T  L  T  R  R  L  V  Y  K  L  F  R  M  L  *  R :   R  Q  Y  I  Q  *  P  L  T  Q  E  *  R  V  L  S  W  L  A  N  C  W  I  R  T  T  L  I  L  D  M  M  R  P  R  V  N  M  *  I  *  *  R  Q  E  S  S  I  Q  *  K  *  S  G  Q  L  W  S  M  L  P   : V  S  R  L  F  *  P  Q  L  K  Q  L  L  S  S  F  L  R  T  R  R  N  L  L  Q  W  V  A  V  W  V  V  V  W  V  A  W  T  S  D  *  K  A  K  N  S  N  C  S  C  L  T  H  L  V  Y  R  T  K  Q  K  N  K  F  R  F  I  S  Y  F  D  E  S  F  Y  D  R  K  R  A  Y  C  I  N  S  K  R  D  K  T  I  V  N  S  C  F  C  R  F  K  I  C  S  L  H  L  N  T  Q  L  K  Y  R  S  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49606" stop="49620"/>
                    <exon start="49905" stop="49942"/>
                    <exon start="50050" stop="50074"/>
                    <exon start="50159" stop="50290"/>
                    <exon start="51432" stop="51591"/>
                    <exon start="51718" stop="51893"/>
                    <exon start="52235" stop="52330"/>
                    <exon start="52704" stop="52808"/>
                    <exon start="52931" stop="53017"/>
                    <exon start="53111" stop="53200"/>
                    <exon start="53289" stop="53369"/>
                    <exon start="53460" stop="53528"/>
                    <exon start="53724" stop="53801"/>
                    <exon start="53893" stop="53988"/>
                    <exon start="54128" stop="54227"/>
                    <exon start="54308" stop="54411"/>
                    <exon start="54530" stop="54714"/>
                    <exon start="54819" stop="54936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1752</number_coding_nucleotides>
                  <number_encoded_amino_acids>584</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSNVMYRFAANLASKASVARTSSQKIGGRLNWSRNYAAKDIRFGVEARALMLQGVEQLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIQNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGITMAVDSVVTNLKSRARMISTSEEIAQVGTISANGERVIGDLIARAMEKVGKEGVITIQDGKTLLNELDVVEGMKLDRGYISPYFITNQKNQKCELDNPLILIHEKKISSINAVVKALELALKRQRPLLIVAEDVDNEALATLILNKLRAGIKVCAIKAPGFGENRKAYLQDLAILTGGQVITEELGLNIENLEFEMLGTSKEATISKDDTVILDGAGEKKSIEERCELIRSTIEQSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAARELDNLTTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLDQDNLDLGYDAAKGEYVDMIKAGIIDPVKVIRTALVDAASVSSLLTTTEAVVVELPKDEKESPAMGGGMGGGMGGMDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54941" stop="55165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAKNSNCSCLTHLVYRTKQKNKFRFISYFDESFYDRKRAYCINSKRDKTIVNSCFCRFKICSLHLNTQLKYRSIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53458" e_stop="53528"/>
            <exon e_start="53724" e_stop="53801"/>
            <exon e_start="53893" e_stop="53988"/>
            <exon e_start="54128" e_stop="54227"/>
            <exon e_start="54308" e_stop="54411"/>
            <exon e_start="54530" e_stop="54714"/>
            <exon e_start="54819" e_stop="55155"/>
            <exon e_start="55494" e_stop="55529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.997" e_score="0.958"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.632" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.335" e_score="0.961"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="53458" e_stop="53528" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53724" e_stop="53801" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53988" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54128" e_stop="54227" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54308" e_stop="54411" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54530" e_stop="54714" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.632">
            <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="0.961">
            <gDNA_exon_boundary e_start="54819" e_stop="55155" e_length="337"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.335">
            <gDNA_intron_boundary i_start="55156" i_stop="55493" i_length="338"/>
          </intron>
          <exon e_serial="8" e_score="0.583">
            <gDNA_exon_boundary e_start="55494" e_stop="55529" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53458" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53988"/>
              <exon start="54128" stop="54227"/>
              <exon start="54308" stop="54411"/>
              <exon start="54530" stop="54714"/>
              <exon start="54819" stop="54836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53512" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53988"/>
              <exon start="54128" stop="54227"/>
              <exon start="54308" stop="54411"/>
              <exon start="54530" stop="54552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54568" stop="54714"/>
              <exon start="54819" stop="55155"/>
              <exon start="55494" stop="55529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54820" stop="55140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG : GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG : ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG : ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG : GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG : ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG : TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAG : CTTAAGAAAACTTCTGGCTCGTGGAATTAGGGGTGA</gDNA_template>
            <first_frame> R  S  *  Q  K  S  L  D  *  T  L  K  I  W  S  S  R  C  W  E  Q  V  K  R :   Q  L  S  L  R  M  I  L  S  F  L  M  V  L  V  R  R  S  P  S  R  N  D  A  N  * :   L  D  Q  P  L  N  R  A  H  L  T  M  T  R  R  S  C  R  K  D  *  L  S  F  Q  G  V  L  L  C  *  R :   L  E  E  P  V  K  L  R  L  V  K  R  K  I  E  *  L  M  L  *  T  P  Q  R  L  Q  W  R  K  E  L  F  Q  :  V  V  V  L  L  F  F  M  Q  Q  E  N  W  I  I  *  Q  Q  P  T  L  T  R  R  L  V  Y  K  L  F  R  M  L  *  R :   R  Q  Y  I  Q  *  P  L  T  Q  E  *  R  V  L  S  W  L  A  N  C  W  I  R  T  T  L  I  L  D  M  M  R  P  R  V  N  M  *  I  *  *  R  Q  E  S  S  I  Q  *  K  *  S  G  Q  L  W  S  M  L  P   : V  S  R  L  F  *  P  Q  L  K  Q  L  L  S  S  F  L  R  T  R  R  N  L  L  Q  W  V  A  V  W  V  V  V  W  V  A  W  T  S  D  *  K  A  K  N  S  N  C  S  C  L  T  H  L  V  Y  R  T  K  Q  K  N  K  F  R  F  I  S  Y  F  D  E  S  F  Y  D  R  K  R  A  Y  C  I  N  S  K  R  D  K  T  I  V  N  S  C  F  C  R  F  K  I  C  S  L  H  L  N  T  Q  L  K  Y  S :   L  R  K  L  L  A  R  G  I  R  G   </first_frame>
            <second_frame>  G  H  N  R  R  A  W  T  E  H  *  K  F  G  V  R  D  A  G  N  K  *  R   : G  N  Y  L  *  G  *  Y  C  H  S  *  W  C  W  *  E  E  V  H  R  G  T  M  R  T   : D  *  I  N  H  *  T  E  H  I  *  L  *  Q  G  E  V  A  G  K  T  S  *  A  F  R  G  C  C  C  V  K   : D  W  R  S  Q  *  S  *  G  W  *  K  E  R  *  S  N  *  C  F  E  R  H  K  G  C  S  G  G  R  N  C  S  R :   W  W  C  C  S  S  L  C  S  K  R  I  G  *  F  D  N  S  Q  L  *  P  E  D  W  C  T  N  Y  S  E  C  S  E   : D  A  S  T  Y  N  S  L  *  R  R  S  R  G  C  C  R  G  W  Q  I  V  G  S  G  Q  P  *  S  W  I  *  C  G  Q  G  *  I  C  R  Y  D  K  G  R  N  H  R  S  S  E  S  D  Q  D  S  F  G  R  C  C  Q  :  C  L  V  S  F  D  H  N  *  S  S  C  C  R  A  S  *  G  R  E  G  I  S  C  N  G  W  R  Y  G  W  W  Y  G  W  H  G  L  L  I  E  K  P  K  T  V  I  A  A  A  *  H  I  W  F  I  E  Q  S  K  K  I  N  L  D  L  F  P  I  L  M  N  L  F  T  I  E  N  A  P  I  V  S  I  A  R  E  T  R  P  L  *  I  H  V  F  V  G  S  K  F  V  V  F  I  *  I  R  S  L  N  I   : A  *  E  N  F  W  L  V  E  L  G  V  </second_frame>
            <third_frame>   V  I  T  E  E  L  G  L  N  I  E  N  L  E  F  E  M  L  G  T  S  K  E  :  A  T  I  S  K  D  D  T  V  I  L  D  G  A  G  E  K  K  S  I  E  E  R  C  E  L  :  I  R  S  T  I  E  Q  S  T  S  D  Y  D  K  E  K  L  Q  E  R  L  A  K  L  S  G  G  V  A  V  L  K  :  I  G  G  A  S  E  A  E  V  G  E  K  K  D  R  V  T  D  A  L  N  A  T  K  A  A  V  E  E  G  I  V  P   : G  G  G  V  A  L  L  Y  A  A  R  E  L  D  N  L  T  T  A  N  F  D  Q  K  I  G  V  Q  I  I  Q  N  A  L  K  :  T  P  V  H  T  I  A  S  N  A  G  V  E  G  A  V  V  V  G  K  L  L  D  Q  D  N  L  D  L  G  Y  D  A  A  K  G  E  Y  V  D  M  I  K  A  G  I  I  D  P  V  K  V  I  R  T  A  L  V  D  A  A  S :   V  S  S  L  L  T  T  T  E  A  V  V  V  E  L  P  K  D  E  K  E  S  P  A  M  G  G  G  M  G  G  G  M  G  G  M  D  F  *  L  K  S  Q  K  Q  *  L  Q  L  L  D  T  F  G  L  *  N  K  A  K  K  *  I  *  I  Y  F  L  F  *  *  I  F  L  R  *  K  T  R  L  L  Y  Q  *  Q  E  R  Q  D  H  C  E  F  M  F  L  *  V  Q  N  L  *  S  S  F  E  Y  A  A  *  I  *  :  L  K  K  T  S  G  S  W  N  *  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53460" stop="53528"/>
                    <exon start="53724" stop="53801"/>
                    <exon start="53893" stop="53988"/>
                    <exon start="54128" stop="54227"/>
                    <exon start="54308" stop="54411"/>
                    <exon start="54530" stop="54714"/>
                    <exon start="54819" stop="54936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VITEELGLNIENLEFEMLGTSKEATISKDDTVILDGAGEKKSIEERCELIRSTIEQSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAARELDNLTTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLDQDNLDLGYDAAKGEYVDMIKAGIIDPVKVIRTALVDAASVSSLLTTTEAVVVELPKDEKESPAMGGGMGGGMGGMDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54941" stop="55155"/>
                    <exon start="55494" stop="55527"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAKNSNCSCLTHLVYRTKQKNKFRFISYFDESFYDRKRAYCINSKRDKTIVNSCFCRFKICSLHLNTQLKYSLRKLLARGIRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="53109" e_stop="53200"/>
            <exon e_start="53289" e_stop="53369"/>
            <exon e_start="53460" e_stop="53528"/>
            <exon e_start="53724" e_stop="53801"/>
            <exon e_start="53893" e_stop="53988"/>
            <exon e_start="54128" e_stop="54227"/>
            <exon e_start="54308" e_stop="54411"/>
            <exon e_start="54530" e_stop="54714"/>
            <exon e_start="54819" e_stop="55167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.957"/>
          <exon-intron don_prob="0.796" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.956" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.632" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="53109" e_stop="53200" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="53289" e_stop="53369" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.796" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="53460" e_stop="53528" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="53724" e_stop="53801" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53988" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="54128" e_stop="54227" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54308" e_stop="54411" e_length="104"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54530" e_stop="54714" e_length="185"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.632">
            <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54819" e_stop="55167" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53109" stop="53200"/>
              <exon start="53289" stop="53369"/>
              <exon start="53460" stop="53528"/>
              <exon start="53724" stop="53801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53512" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53988"/>
              <exon start="54128" stop="54227"/>
              <exon start="54308" stop="54411"/>
              <exon start="54530" stop="54552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54392" stop="54411"/>
              <exon start="54530" stop="54714"/>
              <exon start="54819" stop="55167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54820" stop="55140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAG : GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAA : GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG : GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG : ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG : ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG : GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG : ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG : TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGT</gDNA_template>
            <first_frame> R  D  K  G  P  S  *  L  W  L  K  M  W  T  M  K  H  S  P  L  L  F  *  T  N  S  V  L  E  S  R :   F  V  P  S  K  H  Q  A  L  V  K  T  G  K  L  I  C  K  I  L  L  F  *  L  E  A  K :   S  *  Q  K  S  L  D  *  T  L  K  I  W  S  S  R  C  W  E  Q  V  K  R :   Q  L  S  L  R  M  I  L  S  F  L  M  V  L  V  R  R  S  P  S  R  N  D  A  N  * :   L  D  Q  P  L  N  R  A  H  L  T  M  T  R  R  S  C  R  K  D  *  L  S  F  Q  G  V  L  L  C  *  R :   L  E  E  P  V  K  L  R  L  V  K  R  K  I  E  *  L  M  L  *  T  P  Q  R  L  Q  W  R  K  E  L  F  Q  :  V  V  V  L  L  F  F  M  Q  Q  E  N  W  I  I  *  Q  Q  P  T  L  T  R  R  L  V  Y  K  L  F  R  M  L  *  R :   R  Q  Y  I  Q  *  P  L  T  Q  E  *  R  V  L  S  W  L  A  N  C  W  I  R  T  T  L  I  L  D  M  M  R  P  R  V  N  M  *  I  *  *  R  Q  E  S  S  I  Q  *  K  *  S  G  Q  L  W  S  M  L  P   : V  S  R  L  F  *  P  Q  L  K  Q  L  L  S  S  F  L  R  T  R  R  N  L  L  Q  W  V  A  V  W  V  V  V  W  V  A  W  T  S  D  *  K  A  K  N  S  N  C  S  C  L  T  H  L  V  Y  R  T  K  Q  K  N  K  F  R  F  I  S  Y  F  D  E  S  F  Y  D  R  K  R  A  Y  C  I  N  S  K  R  D  K  T  I  V  N  S  C  F  C  R  F  K  I  C  S  L  H  L  N  T  Q  L  K  Y  R  S  I  S   </first_frame>
            <second_frame>  E  T  K  A  P  L  N  C  G  *  R  C  G  Q  *  S  T  R  H  S  Y  F  E  Q  T  P  C  W  N  Q   : G  L  C  H  Q  S  T  R  L  W  *  K  Q  E  S  L  F  A  R  S  C  Y  F  N  W  R  P   : S  H  N  R  R  A  W  T  E  H  *  K  F  G  V  R  D  A  G  N  K  *  R   : G  N  Y  L  *  G  *  Y  C  H  S  *  W  C  W  *  E  E  V  H  R  G  T  M  R  T   : D  *  I  N  H  *  T  E  H  I  *  L  *  Q  G  E  V  A  G  K  T  S  *  A  F  R  G  C  C  C  V  K   : D  W  R  S  Q  *  S  *  G  W  *  K  E  R  *  S  N  *  C  F  E  R  H  K  G  C  S  G  G  R  N  C  S  R :   W  W  C  C  S  S  L  C  S  K  R  I  G  *  F  D  N  S  Q  L  *  P  E  D  W  C  T  N  Y  S  E  C  S  E   : D  A  S  T  Y  N  S  L  *  R  R  S  R  G  C  C  R  G  W  Q  I  V  G  S  G  Q  P  *  S  W  I  *  C  G  Q  G  *  I  C  R  Y  D  K  G  R  N  H  R  S  S  E  S  D  Q  D  S  F  G  R  C  C  Q  :  C  L  V  S  F  D  H  N  *  S  S  C  C  R  A  S  *  G  R  E  G  I  S  C  N  G  W  R  Y  G  W  W  Y  G  W  H  G  L  L  I  E  K  P  K  T  V  I  A  A  A  *  H  I  W  F  I  E  Q  S  K  K  I  N  L  D  L  F  P  I  L  M  N  L  F  T  I  E  N  A  P  I  V  S  I  A  R  E  T  R  P  L  *  I  H  V  F  V  G  S  K  F  V  V  F  I  *  I  R  S  L  N  I  G  P  F  Q  </second_frame>
            <third_frame>   R  Q  R  P  L  L  I  V  A  E  D  V  D  N  E  A  L  A  T  L  I  L  N  K  L  R  A  G  I  K  :  V  C  A  I  K  A  P  G  F  G  E  N  R  K  A  Y  L  Q  D  L  A  I  L  T  G  G  Q  :  V  I  T  E  E  L  G  L  N  I  E  N  L  E  F  E  M  L  G  T  S  K  E  :  A  T  I  S  K  D  D  T  V  I  L  D  G  A  G  E  K  K  S  I  E  E  R  C  E  L  :  I  R  S  T  I  E  Q  S  T  S  D  Y  D  K  E  K  L  Q  E  R  L  A  K  L  S  G  G  V  A  V  L  K  :  I  G  G  A  S  E  A  E  V  G  E  K  K  D  R  V  T  D  A  L  N  A  T  K  A  A  V  E  E  G  I  V  P   : G  G  G  V  A  L  L  Y  A  A  R  E  L  D  N  L  T  T  A  N  F  D  Q  K  I  G  V  Q  I  I  Q  N  A  L  K  :  T  P  V  H  T  I  A  S  N  A  G  V  E  G  A  V  V  V  G  K  L  L  D  Q  D  N  L  D  L  G  Y  D  A  A  K  G  E  Y  V  D  M  I  K  A  G  I  I  D  P  V  K  V  I  R  T  A  L  V  D  A  A  S :   V  S  S  L  L  T  T  T  E  A  V  V  V  E  L  P  K  D  E  K  E  S  P  A  M  G  G  G  M  G  G  G  M  G  G  M  D  F  *  L  K  S  Q  K  Q  *  L  Q  L  L  D  T  F  G  L  *  N  K  A  K  K  *  I  *  I  Y  F  L  F  *  *  I  F  L  R  *  K  T  R  L  L  Y  Q  *  Q  E  R  Q  D  H  C  E  F  M  F  L  *  V  Q  N  L  *  S  S  F  E  Y  A  A  *  I  *  V  H  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53111" stop="53200"/>
                    <exon start="53289" stop="53369"/>
                    <exon start="53460" stop="53528"/>
                    <exon start="53724" stop="53801"/>
                    <exon start="53893" stop="53988"/>
                    <exon start="54128" stop="54227"/>
                    <exon start="54308" stop="54411"/>
                    <exon start="54530" stop="54714"/>
                    <exon start="54819" stop="54936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQRPLLIVAEDVDNEALATLILNKLRAGIKVCAIKAPGFGENRKAYLQDLAILTGGQVITEELGLNIENLEFEMLGTSKEATISKDDTVILDGAGEKKSIEERCELIRSTIEQSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAARELDNLTTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLDQDNLDLGYDAAKGEYVDMIKAGIIDPVKVIRTALVDAASVSSLLTTTEAVVVELPKDEKESPAMGGGMGGGMGGMDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54941" stop="55165"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAKNSNCSCLTHLVYRTKQKNKFRFISYFDESFYDRKRAYCINSKRDKTIVNSCFCRFKICSLHLNTQLKYRSIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="62866" PGL_stop="58286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62866" e_stop="62729"/>
            <exon e_start="62034" e_stop="61963"/>
            <exon e_start="61448" e_stop="61261"/>
            <exon e_start="60391" e_stop="60328"/>
            <exon e_start="60234" e_stop="60138"/>
            <exon e_start="58609" e_stop="58459"/>
            <exon e_start="58371" e_stop="58286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="0.986"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="62866" e_stop="62729" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62728" i_stop="62035" i_length="694"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62034" e_stop="61963" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61962" i_stop="61449" i_length="514"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61448" e_stop="61261" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.858" acc_prob="0.859">
            <gDNA_intron_boundary i_start="61260" i_stop="60392" i_length="869"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60391" e_stop="60328" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60327" i_stop="60235" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60234" e_stop="60138" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60137" i_stop="58610" i_length="1528"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58609" e_stop="58459" e_length="151"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.957">
            <gDNA_intron_boundary i_start="58458" i_stop="58372" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58371" e_stop="58286" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62866" stop="62729"/>
              <exon start="62034" stop="61963"/>
              <exon start="61448" stop="61261"/>
              <exon start="60391" stop="60328"/>
              <exon start="60234" stop="60138"/>
              <exon start="58609" stop="58459"/>
              <exon start="58371" stop="58286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62862" stop="62729"/>
              <exon start="62034" stop="61963"/>
              <exon start="61448" stop="61261"/>
              <exon start="60391" stop="60349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62823" stop="62729"/>
              <exon start="62034" stop="61963"/>
              <exon start="61448" stop="61261"/>
              <exon start="60391" stop="60328"/>
              <exon start="60234" stop="60138"/>
              <exon start="58609" stop="58561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTTTAAAAAGTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCA : ATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAG : GAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTG : GTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGTTTGACGAAGATCTCCGGAGAG : AACGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAAGGGAGGGCGTAAAAA : AACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAGCAACACCAAGTGGAATGGATTTGGATCTGCCTGTTGATCCAAACGAACCAACATACTGTTTCTGCAATCAAGTTAGCTATGGTGAAATGGTTGCTTGCGACAATCCTAAT : TGCAAAATAGAGTGGTTCCACTACGGCTGCGTTGGCCTCAAAGAACAGCCCAAGGGGAAATGGTTTTGCGCAGATTGTGCAGGAAC</gDNA_template>
            <first_frame> K  L  L  K  S  K  N  M  L  S  *  F  *  S  K  P  I  L  G  L  Q  T  Q  N  Q  *  F  I  V  S  C  L  K  F  S  E  K  C  H  S  S  K  N  F  K  P  :  I  S  K  L  F  R  T  I  C  G  G  S  M  R  C  C  V  I  W  I  K  V  C  K  :  E  S  R  P  K  M  N  N  V  V  T  K  K  *  R  I  *  Y  S  V  L  R  L  V  M  *  H  Q  T  L  H  *  S  N  S  L  T  M  H  W  M  S  K  S  M  Q  S  G  L  L  M  K  K  L  H  *  L  L  R  H  M  I  W :   *  M  L  I  F  S  S  L  I  S  T  *  K  S  L  T  K  I  S  G  E  :  N  G  I  L  L  L  L  L  E  L  L  L  P  L  L  K  I  M  S  N  L  E  G  L  V  R  V  R  E  G  V  K   : K  H  V  L  L  Q  Q  L  Q  L  Q  P  L  Q  Q  H  Q  V  E  W  I  W  I  C  L  L  I  Q  T  N  Q  H  T  V  S  A  I  K  L  A  M  V  K  W  L  L  A  T  I  L  I :   A  K  *  S  G  S  T  T  A  A  L  A  S  K  N  S  P  R  G  N  G  F  A  Q  I  V  Q  E  </first_frame>
            <second_frame>  N  F  *  K  V  K  I  C  *  A  N  S  N  R  S  P  Y  *  G  F  K  L  K  I  N  N  S  S  L  A  V  *  N  S  Q  K  N  V  I  H  R  R  I  S  S  Q :   Y  R  S  S  S  E  P  F  A  E  E  V  C  V  A  A  *  F  G  *  K  S  A  R :   S  P  D  P  K  *  T  T  L  *  Q  R  N  R  G  Y  D  T  A  Y  *  G  W  *  C  D  T  R  L  F  T  N  Q  I  L  *  R  C  I  G  *  A  K  A  C  N  Q  D  C  *  *  K  S  C  T  S  F  S  G  I  *  S   : G  R  C  S  Y  S  A  A  *  S  V  L  E  K  V  *  R  R  S  P  E  R :   T  G  Y  C  C  C  Y  W  S  S  C  Y  H  C  *  K  *  C  Q  I  W  K  V  W  *  G  *  G  R  A  *  K  :  N  T  S  C  Y  S  S  C  S  Y  S  H  C  S  N  T  K  W  N  G  F  G  S  A  C  *  S  K  R  T  N  I  L  F  L  Q  S  S  *  L  W  *  N  G  C  L  R  Q  S  *   : L  Q  N  R  V  V  P  L  R  L  R  W  P  Q  R  T  A  Q  G  E  M  V  L  R  R  L  C  R  N </second_frame>
            <third_frame>   T  F  K  K  *  K  Y  V  E  L  I  L  I  E  A  H  I  R  A  S  N  S  K  S  I  I  H  R  *  L  F  K  I  L  R  K  M  S  F  I  E  E  F  Q  A   : N  I  E  A  L  P  N  H  L  R  R  K  Y  A  L  L  R  D  L  D  K  S  L  Q   : G  V  Q  T  Q  N  E  Q  R  C  D  K  E  I  E  D  M  I  Q  R  I  K  A  G  N  V  T  P  D  S  S  L  I  K  F  S  D  D  A  L  D  E  Q  K  H  A  I  R  I  A  D  E  K  V  A  L  A  S  Q  A  Y  D  L  :  V  D  A  H  I  Q  Q  L  D  Q  Y  L  K  K  F  D  E  D  L  R  R   : E  R  D  T  A  V  V  T  G  A  P  A  T  T  V  E  N  N  V  K  S  G  R  S  G  E  G  K  G  G  R  K  K :   T  R  L  A  T  A  A  A  A  T  A  T  A  A  T  P  S  G  M  D  L  D  L  P  V  D  P  N  E  P  T  Y  C  F  C  N  Q  V  S  Y  G  E  M  V  A  C  D  N  P  N  :  C  K  I  E  W  F  H  Y  G  C  V  G  L  K  E  Q  P  K  G  K  W  F  C  A  D  C  A  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62777" stop="62729"/>
                    <exon start="62034" stop="61963"/>
                    <exon start="61448" stop="61261"/>
                    <exon start="60391" stop="60328"/>
                    <exon start="60234" stop="60138"/>
                    <exon start="58609" stop="58459"/>
                    <exon start="58371" stop="58288"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKILRKMSFIEEFQANIEALPNHLRRKYALLRDLDKSLQGVQTQNEQRCDKEIEDMIQRIKAGNVTPDSSLIKFSDDALDEQKHAIRIADEKVALASQAYDLVDAHIQQLDQYLKKFDEDLRRERDTAVVTGAPATTVENNVKSGRSGEGKGGRKKTRLATAAAATATAATPSGMDLDLPVDPNEPTYCFCNQVSYGEMVACDNPNCKIEWFHYGCVGLKEQPKGKWFCADCAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75068" PGL_stop="76506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75068" e_stop="75534"/>
            <exon e_start="76110" e_stop="76506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75068" e_stop="75534" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="76110" e_stop="76506" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75534"/>
              <exon start="76110" stop="76276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75534"/>
              <exon start="76110" stop="76187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75534"/>
              <exon start="76110" stop="76133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75078" stop="75534"/>
              <exon start="76110" stop="76420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75079" stop="75534"/>
              <exon start="76110" stop="76189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75095" stop="75519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75125" stop="75534"/>
              <exon start="76110" stop="76506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75129" stop="75534"/>
              <exon start="76110" stop="76128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG : GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAGGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTGATGTAATTTTGTGTGTGTGTATGTATTCTGTTTTGTTTGATCAATATGAATATTAATTGTCTTGTTTCATTGTGGCAAAGTGAATA</gDNA_template>
            <first_frame> K  H  L  N  Q  K  S  Q  K  K  N  V  Y  Q  I  C  N  F  I  C  I  C  T  I  C  S  C  N  *  S  C  K  Y  K  Y  T  T  R  T  G  S  *  I  V  H  A  R  Y  L  G  R  K  *  S  N  S  S  T  N  N  G  F  I  R  Q  Y  L  *  W  T  N  T  I  C  Y  T  T  W  F  *  T  S  R  R  W  C  C  N  S  K  C  *  W  C  N  A  N  I  Q  Y  Q  W  C  S  I  R  N  R  S  S  R  H  N  I  C  W  R  K  *  *  *  *  W  T  K  C  E  Y  S  I  R  P  *  W  S  R  A  R  V  R  D  N  H  G  Y  R  *  L  L  D  L  V  S  *  I  R :   Y  T  K  T  W  K  S  T  R  S  I  C  S  K  F  S  R  R  K  Y  S  N  D  G  I  Y  S  Y  V  *  R  R  *  I  W  *  *  S  K  F  L  W  S  F  *  N  W  K  Y  N  V  K  N  F  S  N  R  R  N  W  *  I  *  K  R  A  W  I  R  G  N  T  F  T  Y  T  S  W  S  T  C  C  *  W  C  *  D  I  V  E  D  C  C  S  S  Y  L  L  N  F  H  *  F  D  V  I  L  C  V  C  M  Y  S  V  L  F  D  Q  Y  E  Y  *  L  S  C  F  I  V  A  K  *  I </first_frame>
            <second_frame>  N  I  S  I  K  N  P  K  R  K  M  F  I  K  F  A  I  L  F  V  F  V  P  F  V  V  A  I  D  H  V  S  T  S  T  P  Q  E  P  V  L  E  L  Y  M  H  D  I  L  G  G  N  N  P  T  A  R  P  I  T  G  L  L  G  N  I  Y  S  G  Q  I  P  F  A  T  P  L  G  F  E  P  P  E  D  G  V  A  I  P  N  A  N  G  A  M  P  T  F  N  I  N  G  V  P  L  G  T  G  L  A  G  T  I  F  A  G  G  N  N  N  N  N  G  Q  N  V  N  T  Q  L  G  P  D  G  L  G  L  G  F  G  T  I  T  V  I  D  D  F  L  T  S  S  P  E  L   : G  T  Q  K  L  G  K  A  Q  G  V  Y  V  A  S  S  A  D  G  S  T  Q  M  M  A  F  T  A  M  F  E  G  G  E  Y  G  D  S  L  N  F  F  G  V  F  R  I  G  S  T  M  S  R  I  S  V  T  G  G  T  G  K  F  K  N  A  R  G  F  A  E  I  R  S  L  I  P  A  G  Q  H  V  A  N  G  A  E  T  L  L  R  I  V  V  H  L  T  Y  *  I  F  I  N  L  M  *  F  C  V  C  V  C  I  L  F  C  L  I  N  M  N  I  N  C  L  V  S  L  W  Q  S  E   </second_frame>
            <third_frame>   T  S  Q  S  K  I  P  K  E  K  C  L  S  N  L  Q  F  Y  L  Y  L  Y  H  L  *  L  Q  L  I  M  *  V  Q  V  H  H  K  N  R  F  L  N  C  T  C  T  I  S  W  E  E  I  I  Q  Q  L  D  Q  *  R  V  Y  *  A  I  F  I  V  D  K  Y  H  L  L  H  H  L  V  L  N  L  Q  K  M  V  L  Q  F  Q  M  L  M  V  Q  C  Q  H  S  I  S  M  V  F  H  *  E  Q  V  *  Q  A  Q  Y  L  L  E  E  I  I  I  I  M  D  K  M  *  I  L  N  *  A  L  M  V  *  G  *  G  S  G  Q  S  R  L  S  M  T  S  *  P  R  L  L  N  *  :  V  H  K  N  L  E  K  H  K  E  Y  M  *  Q  V  Q  Q  T  E  V  L  K  *  W  H  L  Q  L  C  L  K  E  V  N  M  V  I  V  *  I  S  L  E  F  L  E  L  E  V  Q  C  Q  E  F  Q  *  Q  E  E  L  V  N  L  K  T  R  V  D  S  R  K  Y  V  H  L  Y  Q  L  V  N  M  L  L  M  V  L  R  H  C  *  G  L  L  F  I  L  L  T  E  F  S  L  I  *  C  N  F  V  C  V  Y  V  F  C  F  V  *  S  I  *  I  L  I  V  L  F  H  C  G  K  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75069" stop="75534"/>
                    <exon start="76110" stop="76405"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISIKNPKRKMFIKFAILFVFVPFVVAIDHVSTSTPQEPVLELYMHDILGGNNPTARPITGLLGNIYSGQIPFATPLGFEPPEDGVAIPNANGAMPTFNINGVPLGTGLAGTIFAGGNNNNNGQNVNTQLGPDGLGLGFGTITVIDDFLTSSPELGTQKLGKAQGVYVASSADGSTQMMAFTAMFEGGEYGDSLNFFGVFRIGSTMSRISVTGGTGKFKNARGFAEIRSLIPAGQHVANGAETLLRIVVHLTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="79124" PGL_stop="79320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79124" e_stop="79320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="79124" e_stop="79320" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79124" stop="79320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTATTTCAAGAATCTGTTTGTAAATCCCAAGAAAATGCACCACCACCACCACCCTCCTCCACCAACCACCACCCCCACCAAAATCTCAACACCCTTTATCATTCTTGCCACCACTATCTTCTCACTTCTCCTTATTCTTACCTTCTCCTTCACTTCCCCTCCACCCCACCCCCACCCCAACCAACCCCACCCTT</gDNA_template>
            <first_frame> K  L  F  Q  E  S  V  C  K  S  Q  E  N  A  P  P  P  P  P  S  S  T  N  H  H  P  H  Q  N  L  N  T  L  Y  H  S  C  H  H  Y  L  L  T  S  P  Y  S  Y  L  L  L  H  F  P  S  T  P  P  P  P  Q  P  T  P  P   </first_frame>
            <second_frame>  N  Y  F  K  N  L  F  V  N  P  K  K  M  H  H  H  H  H  P  P  P  P  T  T  T  P  T  K  I  S  T  P  F  I  I  L  A  T  T  I  F  S  L  L  L  I  L  T  F  S  F  T  S  P  P  P  H  P  H  P  N  Q  P  H  P  </second_frame>
            <third_frame>   T  I  S  R  I  C  L  *  I  P  R  K  C  T  T  T  T  T  L  L  H  Q  P  P  P  P  P  K  S  Q  H  P  L  S  F  L  P  P  L  S  S  H  F  S  L  F  L  P  S  P  S  L  P  L  H  P  T  P  T  P  T  N  P  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79124" stop="79318"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLFQESVCKSQENAPPPPPSSTNHHPHQNLNTLYHSCHHYLLTSPYSYLLLHFPSTPPPPQPTPP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79125" stop="79319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYFKNLFVNPKKMHHHHHPPPPTTTPTKISTPFIILATTIFSLLLILTFSFTSPPPHPHPNQPHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="79726" PGL_stop="82843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79726" e_stop="79743"/>
            <exon e_start="81060" e_stop="81135"/>
            <exon e_start="81237" e_stop="81352"/>
            <exon e_start="82188" e_stop="82843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.778" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.196" acc_prob="0.826" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79726" e_stop="79743" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.778" acc_prob="0.913">
            <gDNA_intron_boundary i_start="79744" i_stop="81059" i_length="1316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81060" e_stop="81135" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81136" i_stop="81236" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81237" e_stop="81352" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.196" acc_prob="0.826">
            <gDNA_intron_boundary i_start="81353" i_stop="82187" i_length="835"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82188" e_stop="82843" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79726" stop="79743"/>
              <exon start="81060" stop="81135"/>
              <exon start="81237" stop="81352"/>
              <exon start="82188" stop="82843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTGTTACTCAAGATG : ATCTTCTACACATTCTGTCATATCTTCCCAAGGATCTTAATTTTGTCAACCACACAAGCTACATAGGGTGGAGAGA : GTCAAGGAAGTTGAAACCAATAGTTGTTGATCCTGGGCTCTATCTTGAAGAAGAAGATGAAGTATTTTATGCAACTCAGAAGAGGGAACTGCCTGATGCTTATCGATTATTTTCAG : GGTCTTCATCTAGTATCTTGAGTCGGAAGTTTATCGAGTTCTGCATCTTGGGCACGGATAACCTACCCAGGACTCTGCTAATGTACTTGTCAAATTCACCATCCTCGTCATCTGTGTATTTCCCGACCATTCTGTGCAATTCAAGGAAATTCAATAGAACAACAATCAACCACAACTTGCGGTATGCTTCATTTAACTCAAGAAAAGAGGCCCTTCCACTCAATACCAGTAACTTCAATGACCTGGTGATGAGTGGAGCAGTGTTTGCTGCACCATTCGAGGCAAACAATCCGATTCTTGACCAGATCGACAGTGAACTTCTCCACCACAAGTACGATGAACCAGTCCCTGGCGGATGGTGTTTAGGTGAAAATGAAACTGATAAATGTACTGTCTGGGGAGACGCAGAAGTTCTAAGACCAGGTCCAGGAGCACAGAGACTGGAAGAAAGATTTGTCCAGATTTTCAGTAATGGTACATTTCGTTCTAGTCGATGTGTCTACGAATAGAGCTCCCTCAAGATGAGAACATACAGAAGAGACAAACACTCGAAAAATGTTTTCTATCGAAAACCACCTCTCTACCTCCCAAGGTAGGGTTGAGGTTTGTGTATACACTACCTTCCCCAGACTCACACACTGGGTATGTTGTTGACT</gDNA_template>
            <first_frame> H  L  L  L  K  M  :  I  F  Y  T  F  C  H  I  F  P  R  I  L  I  L  S  T  T  Q  A  T  *  G  G  E   : S  Q  G  S  *  N  Q  *  L  L  I  L  G  S  I  L  K  K  K  M  K  Y  F  M  Q  L  R  R  G  N  C  L  M  L  I  D  Y  F  Q  :  G  L  H  L  V  S  *  V  G  S  L  S  S  S  A  S  W  A  R  I  T  Y  P  G  L  C  *  C  T  C  Q  I  H  H  P  R  H  L  C  I  S  R  P  F  C  A  I  Q  G  N  S  I  E  Q  Q  S  T  T  T  C  G  M  L  H  L  T  Q  E  K  R  P  F  H  S  I  P  V  T  S  M  T  W  *  *  V  E  Q  C  L  L  H  H  S  R  Q  T  I  R  F  L  T  R  S  T  V  N  F  S  T  T  S  T  M  N  Q  S  L  A  D  G  V  *  V  K  M  K  L  I  N  V  L  S  G  E  T  Q  K  F  *  D  Q  V  Q  E  H  R  D  W  K  K  D  L  S  R  F  S  V  M  V  H  F  V  L  V  D  V  S  T  N  R  A  P  S  R  *  E  H  T  E  E  T  N  T  R  K  M  F  S  I  E  N  H  L  S  T  S  Q  G  R  V  E  V  C  V  Y  T  T  F  P  R  L  T  H  W  V  C  C  *   </first_frame>
            <second_frame>  T  C  Y  S  R  * :   S  S  T  H  S  V  I  S  S  Q  G  S  *  F  C  Q  P  H  K  L  H  R  V  E  R  :  V  K  E  V  E  T  N  S  C  *  S  W  A  L  S  *  R  R  R  *  S  I  L  C  N  S  E  E  G  T  A  *  C  L  S  I  I  F  R :   V  F  I  *  Y  L  E  S  E  V  Y  R  V  L  H  L  G  H  G  *  P  T  Q  D  S  A  N  V  L  V  K  F  T  I  L  V  I  C  V  F  P  D  H  S  V  Q  F  K  E  I  Q  *  N  N  N  Q  P  Q  L  A  V  C  F  I  *  L  K  K  R  G  P  S  T  Q  Y  Q  *  L  Q  *  P  G  D  E  W  S  S  V  C  C  T  I  R  G  K  Q  S  D  S  *  P  D  R  Q  *  T  S  P  P  Q  V  R  *  T  S  P  W  R  M  V  F  R  *  K  *  N  *  *  M  Y  C  L  G  R  R  R  S  S  K  T  R  S  R  S  T  E  T  G  R  K  I  C  P  D  F  Q  *  W  Y  I  S  F  *  S  M  C  L  R  I  E  L  P  Q  D  E  N  I  Q  K  R  Q  T  L  E  K  C  F  L  S  K  T  T  S  L  P  P  K  V  G  L  R  F  V  Y  T  L  P  S  P  D  S  H  T  G  Y  V  V  D  </second_frame>
            <third_frame>   L  V  T  Q  D   : D  L  L  H  I  L  S  Y  L  P  K  D  L  N  F  V  N  H  T  S  Y  I  G  W  R  E :   S  R  K  L  K  P  I  V  V  D  P  G  L  Y  L  E  E  E  D  E  V  F  Y  A  T  Q  K  R  E  L  P  D  A  Y  R  L  F  S   : G  S  S  S  S  I  L  S  R  K  F  I  E  F  C  I  L  G  T  D  N  L  P  R  T  L  L  M  Y  L  S  N  S  P  S  S  S  S  V  Y  F  P  T  I  L  C  N  S  R  K  F  N  R  T  T  I  N  H  N  L  R  Y  A  S  F  N  S  R  K  E  A  L  P  L  N  T  S  N  F  N  D  L  V  M  S  G  A  V  F  A  A  P  F  E  A  N  N  P  I  L  D  Q  I  D  S  E  L  L  H  H  K  Y  D  E  P  V  P  G  G  W  C  L  G  E  N  E  T  D  K  C  T  V  W  G  D  A  E  V  L  R  P  G  P  G  A  Q  R  L  E  E  R  F  V  Q  I  F  S  N  G  T  F  R  S  S  R  C  V  Y  E  *  S  S  L  K  M  R  T  Y  R  R  D  K  H  S  K  N  V  F  Y  R  K  P  P  L  Y  L  P  R  *  G  *  G  L  C  I  H  Y  L  P  Q  T  H  T  L  G  M  L  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79728" stop="79743"/>
                    <exon start="81060" stop="81135"/>
                    <exon start="81237" stop="81352"/>
                    <exon start="82188" stop="82696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTQDDLLHILSYLPKDLNFVNHTSYIGWRESRKLKPIVVDPGLYLEEEDEVFYATQKRELPDAYRLFSGSSSSILSRKFIEFCILGTDNLPRTLLMYLSNSPSSSSVYFPTILCNSRKFNRTTINHNLRYASFNSRKEALPLNTSNFNDLVMSGAVFAAPFEANNPILDQIDSELLHHKYDEPVPGGWCLGENETDKCTVWGDAEVLRPGPGAQRLEERFVQIFSNGTFRSSRCVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="89820" PGL_stop="83264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89820" e_stop="89485"/>
            <exon e_start="87741" e_stop="87582"/>
            <exon e_start="86697" e_stop="86514"/>
            <exon e_start="86084" e_stop="86037"/>
            <exon e_start="85475" e_stop="85379"/>
            <exon e_start="84774" e_stop="84611"/>
            <exon e_start="84423" e_stop="84358"/>
            <exon e_start="84013" e_stop="83963"/>
            <exon e_start="83843" e_stop="83739"/>
            <exon e_start="83652" e_stop="83264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.791" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.632" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.709" e_score="0.982"/>
          <exon-intron don_prob="0.894" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.840" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89820" e_stop="89485" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.791" acc_prob="0.896">
            <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87741" e_stop="87582" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.632" acc_prob="0.958">
            <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86697" e_stop="86514" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.950">
            <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86084" e_stop="86037" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86036" i_stop="85476" i_length="561"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85475" e_stop="85379" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85378" i_stop="84775" i_length="604"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="84774" e_stop="84611" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.709">
            <gDNA_intron_boundary i_start="84610" i_stop="84424" i_length="187"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="84423" e_stop="84358" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.894" acc_prob="0.995">
            <gDNA_intron_boundary i_start="84357" i_stop="84014" i_length="344"/>
          </intron>
          <exon e_serial="8" e_score="0.960">
            <gDNA_exon_boundary e_start="84013" e_stop="83963" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.840">
            <gDNA_intron_boundary i_start="83962" i_stop="83844" i_length="119"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="83843" e_stop="83739" e_length="105"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.984">
            <gDNA_intron_boundary i_start="83738" i_stop="83653" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83652" e_stop="83264" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89820" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89820" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89808" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86514"/>
              <exon start="86084" stop="86037"/>
              <exon start="85475" stop="85457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89803" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89800" stop="89485"/>
              <exon start="87741" stop="87664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89799" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86514"/>
              <exon start="86084" stop="86037"/>
              <exon start="85475" stop="85407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89685" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89560" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89540" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86514"/>
              <exon start="86084" stop="86037"/>
              <exon start="85475" stop="85379"/>
              <exon start="84774" stop="84611"/>
              <exon start="84423" stop="84358"/>
              <exon start="84013" stop="83989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87722" stop="87582"/>
              <exon start="86697" stop="86514"/>
              <exon start="86084" stop="86037"/>
              <exon start="85475" stop="85379"/>
              <exon start="84774" stop="84677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84619" stop="84611"/>
              <exon start="84423" stop="84358"/>
              <exon start="84013" stop="83963"/>
              <exon start="83843" stop="83739"/>
              <exon start="83652" stop="83289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83981" stop="83963"/>
              <exon start="83843" stop="83739"/>
              <exon start="83652" stop="83264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83981" stop="83963"/>
              <exon start="83843" stop="83739"/>
              <exon start="83652" stop="83264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAATCCCAAGAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT : TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT : TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG : ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTG : GTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAA : CCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTAAAGATGCATGGGAACTTCCAAGCAATGATGTTGAGACTGGTGAAAAGAGTAGTCAGGAACTTGATGAATTTGCAGAAGCTGAGGAGCTTGTGAAGGAAAAG : GCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCT : GAATGGGGAGATCGATCAATGCTTGCAACAATAGCACTCGGTGCAGCTCAG : TCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTG : GTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</gDNA_template>
            <first_frame> A  K  S  Q  E  L  H  T  L  *  S  V  L  Q  L  L  G  Y  N  *  L  P  E  K  V  *  R  I  Q  I  F  F  I  K  F  F  V  H  K  *  L  Y  S  K  K  K  A  I  F  Y  S  F  *  Y  I  E  L  R  K  K  C  R  G  W  L  F  K  H  L  I  L  *  H  Q  V  M  V  G  R  K  S  F  H  F  *  M  F  W  I  H  C  L  A  K  N  Q  Y  P  Q  G  E  F  P  L  F  Q  L  E  F  H  L  Y  :  *  D  V  E  R  S  L  S  C  S  E  G  I  A  E  L  Y  P  M  H  L  M  L  V  S  D  L  E  V  L  K  K  V  K  E  M  K  A  T  M  F  Q  S  I  S  R  L  L  M  V  H  R  K   : L  R  H  F  Q  V  K  F  L  I  L  S  L  *  L  L  C  Y  V  D  V  R  *  Y  F  R  *  L  P  S  R  K  E  D  R  H  H  S  L  Q  H  F  R  N  Q  G  S  L  L  H  S  H  *  Y  L  F  L  R  L  E  T  R :   H  F  S  S  L  P  S  W  P  C  N  I  R  E  Y  W :   S  F  W  D  Q  W  V  L  F  H  L  *  R  S  S  L  S  *  *  E  G  S  F  I  Q  Y  L  L  S  F  K  Q  :  P  C  L  L  E  N  T  R  L  L  P  S  C  S  F  L  A  S  N  Q  L  K  M  H  G  N  F  Q  A  M  M  L  R  L  V  K  R  V  V  R  N  L  M  N  L  Q  K  L  R  S  L  *  R  K  R :   H  Q  N  G  S  Q  I  H  L  K  F  C  G  S  L  L  A  S  Y  F  L  L :   N  G  E  I  D  Q  C  L  Q  Q  *  H  S  V  Q  L  S :   L  H  G  A  W  Q  V  V  P  L  P  D  T  W  L  L  H  L  L  Q  F  *  E  A  G  F  L  P  I  T  F  L  R  N  W :   L  A  T  W  A  E  F  Y  S  *  Y  L  L  L  L  L  C  L  E  S  F  N  Q  A  L  Q  K  R  R  Q  C  R  *  V  L  R  R  L  F  R  L  D  R  Y  A  R  N  A  N  G  R  G  Q  E  T  P  D  G  T  M  D  Q  *  H  D  L  A  *  N  N  D  I  L  V  L  L  *  K  K  *  K  K  L  Y  *  W  F  L  G  N  T  R  E  L  C  V  C  V  I  L  W  P  P  S  E  N  F  S  D  S  *  C  F  S  M  I  V  V  Q  V  L  Y  M  *  K  N  Q  D  F  </first_frame>
            <second_frame>  Q  N  P  K  N  S  T  L  S  N  Q  F  F  S  F  L  V  T  T  N  F  L  K  K  C  R  E  S  K  Y  F  L  L  N  F  L  F  T  N  D  F  I  V  K  K  K  L  S  F  I  V  F  S  I  L  N  *  E  K  N  A  G  V  G  S  S  N  I  *  F  Y  S  I  K  L  W  W  E  E  K  V  F  I  F  E  C  F  G  F  I  A  *  Q  K  I  N  T  H  K  E  N  F  P  F  F  S  W  N  F  I  F  I :   K  M  *  S  A  P  *  V  A  A  K  A  *  Q  N  Y  T  L  C  I  *  C  W  C  R  I  W  K  F  *  R  K  S  R  K  *  K  P  Q  C  F  S  Q  S  A  V  Y  *  W  F  I  E  N  :  *  G  T  S  K  *  N  S  L  S  S  R  Y  S  S  C  A  M  W  M  F  V  S  I  F  G  D  C  L  H  E  R  R  T  V  I  T  H  C  S  I  F  E  I  R  V  H  C  C  I  L  I  D  I  C  F  *  D  W  R  Q   : D  I  F  H  R  C  P  P  G  H  A  I  *  E  N  T   : G  P  F  G  I  N  G  C  S  F  T  Y  D  G  L  L  C  H  N  R  K  D  L  S  F  S  T  C  S  V  S  N  N :   L  A  Y  W  R  I  R  G  C  C  P  L  V  L  F  W  P  Q  I  N  *  R  C  M  G  T  S  K  Q  *  C  *  D  W  *  K  E  *  S  G  T  *  *  I  C  R  S  *  G  A  C  E  G  K   : G  I  K  T  A  H  K  S  T  *  N  F  V  E  V  F  *  P  R  I  F  C   : *  M  G  R  S  I  N  A  C  N  N  S  T  R  C  S  S   : V  S  M  G  R  G  K  W  C  H  C  R  T  P  G  C  Y  I  Y  C  N  S  R  R  R  V  S  C  Q  L  H  F  *  E  T   : G  W  L  L  G  R  S  S  I  L  N  I  C  C  C  Y  F  V  W  S  L  L  T  K  L  Y  R  K  E  D  N  V  D  K  F  *  D  A  Y  L  D  W  I  D  T  R  E  M  P  M  V  E  G  K  K  L  L  M  V  P  W  I  S  N  M  I  W  H  K  T  M  T  F  L  Y  Y  C  R  R  S  R  R  N  Y  I  S  G  S  *  A  T  Q  E  S  C  V  Y  V  *  Y  Y  G  P  H  Q  K  I  F  L  T  V  D  A  F  P  *  L  L  Y  K  F  C  I  C  E  R  I  K  I  S </second_frame>
            <third_frame>   K  I  P  R  T  P  H  S  L  I  S  S  S  A  S  W  L  Q  L  T  S  *  K  S  V  E  N  P  N  I  F  Y  *  I  F  C  S  Q  M  T  L  *  *  K  K  S  Y  L  L  *  F  L  V  Y  *  I  K  K  K  M  Q  G  L  A  L  Q  T  S  N  S  I  A  S  S  Y  G  G  K  K  K  F  S  F  L  N  V  L  D  S  L  P  S  K  K  S  I  P  T  R  R  I  S  P  F  S  A  G  I  S  S  L   : L  R  C  R  A  L  P  K  L  Q  R  R  H  S  R  I  I  P  Y  A  S  N  V  G  V  G  S  G  S  F  E  E  S  Q  G  N  E  S  H  N  V  S  V  N  Q  P  S  T  D  G  S  S  K  I :   E  A  L  P  S  K  I  P  Y  P  L  A  I  A  L  V  L  C  G  C  S  L  V  F  S  V  I  A  F  T  K  G  G  P  S  S  L  I  A  A  F  S  K  S  G  F  T  A  A  F  S  L  I  F  V  S  E  I  G  D  K  :  T  F  F  I  A  A  L  L  A  M  Q  Y  K  R  I  L  :  V  L  L  G  S  M  G  A  L  S  L  M  T  V  F  S  V  I  I  G  R  I  F  H  S  V  P  A  Q  F  Q  T   : T  L  P  I  G  E  Y  A  A  V  A  L  L  F  F  F  G  L  K  S  I  K  D  A  W  E  L  P  S  N  D  V  E  T  G  E  K  S  S  Q  E  L  D  E  F  A  E  A  E  E  L  V  K  E  K  :  A  S  K  R  L  T  N  P  L  E  I  L  W  K  S  F  S  L  V  F  F  A  :  E  W  G  D  R  S  M  L  A  T  I  A  L  G  A  A  Q  :  S  P  W  G  V  A  S  G  A  I  A  G  H  L  V  A  T  S  I  A  I  L  G  G  G  F  L  A  N  Y  I  S  E  K  L  :  V  G  Y  L  G  G  V  L  F  L  I  F  A  V  A  T  L  F  G  V  F  *  P  S  S  T  E  K  K  T  M  S  I  S  S  K  T  P  I  *  T  G  *  I  R  E  K  C  Q  W  *  R  A  R  N  S  *  W  Y  H  G  S  V  T  *  F  G  I  K  Q  *  H  S  C  T  T  V  E  E  V  E  E  T  I  L  V  V  L  R  Q  H  K  R  A  V  C  M  C  N  T  M  A  P  I  R  K  F  F  *  Q  L  M  L  F  H  D  C  C  T  S  F  V  Y  V  K  E  S  R  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89653" stop="89485"/>
                    <exon start="87741" stop="87582"/>
                    <exon start="86697" stop="86514"/>
                    <exon start="86084" stop="86037"/>
                    <exon start="85475" stop="85379"/>
                    <exon start="84774" stop="84611"/>
                    <exon start="84423" stop="84358"/>
                    <exon start="84013" stop="83963"/>
                    <exon start="83843" stop="83739"/>
                    <exon start="83652" stop="83587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKKMQGLALQTSNSIASSYGGKKKFSFLNVLDSLPSKKSIPTRRISPFSAGISSLLRCRALPKLQRRHSRIIPYASNVGVGSGSFEESQGNESHNVSVNQPSTDGSSKIEALPSKIPYPLAIALVLCGCSLVFSVIAFTKGGPSSLIAAFSKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKRILVLLGSMGALSLMTVFSVIIGRIFHSVPAQFQTTLPIGEYAAVALLFFFGLKSIKDAWELPSNDVETGEKSSQELDEFAEAEELVKEKASKRLTNPLEILWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLVATSIAILGGGFLANYISEKLVGYLGGVLFLIFAVATLFGVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89820" e_stop="89485"/>
            <exon e_start="87741" e_stop="87582"/>
            <exon e_start="86697" e_stop="86514"/>
            <exon e_start="86084" e_stop="86035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.791" acc_prob="0.896" e_score="0.987"/>
          <exon-intron don_prob="0.632" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="89820" e_stop="89485" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.791" acc_prob="0.896">
            <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87741" e_stop="87582" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.632" acc_prob="0.958">
            <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86697" e_stop="86514" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.950">
            <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86084" e_stop="86035" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89820" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89820" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89803" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89800" stop="89485"/>
              <exon start="87741" stop="87664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89742" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86514"/>
              <exon start="86084" stop="86035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89685" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89560" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAATCCCAAGAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT : TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT : TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG : ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTGGT</gDNA_template>
            <first_frame> A  K  S  Q  E  L  H  T  L  *  S  V  L  Q  L  L  G  Y  N  *  L  P  E  K  V  *  R  I  Q  I  F  F  I  K  F  F  V  H  K  *  L  Y  S  K  K  K  A  I  F  Y  S  F  *  Y  I  E  L  R  K  K  C  R  G  W  L  F  K  H  L  I  L  *  H  Q  V  M  V  G  R  K  S  F  H  F  *  M  F  W  I  H  C  L  A  K  N  Q  Y  P  Q  G  E  F  P  L  F  Q  L  E  F  H  L  Y  :  *  D  V  E  R  S  L  S  C  S  E  G  I  A  E  L  Y  P  M  H  L  M  L  V  S  D  L  E  V  L  K  K  V  K  E  M  K  A  T  M  F  Q  S  I  S  R  L  L  M  V  H  R  K   : L  R  H  F  Q  V  K  F  L  I  L  S  L  *  L  L  C  Y  V  D  V  R  *  Y  F  R  *  L  P  S  R  K  E  D  R  H  H  S  L  Q  H  F  R  N  Q  G  S  L  L  H  S  H  *  Y  L  F  L  R  L  E  T  R :   H  F  S  S  L  P  S  W  P  C  N  I  R  E  Y  W  </first_frame>
            <second_frame>  Q  N  P  K  N  S  T  L  S  N  Q  F  F  S  F  L  V  T  T  N  F  L  K  K  C  R  E  S  K  Y  F  L  L  N  F  L  F  T  N  D  F  I  V  K  K  K  L  S  F  I  V  F  S  I  L  N  *  E  K  N  A  G  V  G  S  S  N  I  *  F  Y  S  I  K  L  W  W  E  E  K  V  F  I  F  E  C  F  G  F  I  A  *  Q  K  I  N  T  H  K  E  N  F  P  F  F  S  W  N  F  I  F  I :   K  M  *  S  A  P  *  V  A  A  K  A  *  Q  N  Y  T  L  C  I  *  C  W  C  R  I  W  K  F  *  R  K  S  R  K  *  K  P  Q  C  F  S  Q  S  A  V  Y  *  W  F  I  E  N  :  *  G  T  S  K  *  N  S  L  S  S  R  Y  S  S  C  A  M  W  M  F  V  S  I  F  G  D  C  L  H  E  R  R  T  V  I  T  H  C  S  I  F  E  I  R  V  H  C  C  I  L  I  D  I  C  F  *  D  W  R  Q   : D  I  F  H  R  C  P  P  G  H  A  I  *  E  N  T  G </second_frame>
            <third_frame>   K  I  P  R  T  P  H  S  L  I  S  S  S  A  S  W  L  Q  L  T  S  *  K  S  V  E  N  P  N  I  F  Y  *  I  F  C  S  Q  M  T  L  *  *  K  K  S  Y  L  L  *  F  L  V  Y  *  I  K  K  K  M  Q  G  L  A  L  Q  T  S  N  S  I  A  S  S  Y  G  G  K  K  K  F  S  F  L  N  V  L  D  S  L  P  S  K  K  S  I  P  T  R  R  I  S  P  F  S  A  G  I  S  S  L   : L  R  C  R  A  L  P  K  L  Q  R  R  H  S  R  I  I  P  Y  A  S  N  V  G  V  G  S  G  S  F  E  E  S  Q  G  N  E  S  H  N  V  S  V  N  Q  P  S  T  D  G  S  S  K  I :   E  A  L  P  S  K  I  P  Y  P  L  A  I  A  L  V  L  C  G  C  S  L  V  F  S  V  I  A  F  T  K  G  G  P  S  S  L  I  A  A  F  S  K  S  G  F  T  A  A  F  S  L  I  F  V  S  E  I  G  D  K  :  T  F  F  I  A  A  L  L  A  M  Q  Y  K  R  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89653" stop="89485"/>
                    <exon start="87741" stop="87582"/>
                    <exon start="86697" stop="86514"/>
                    <exon start="86084" stop="86037"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKKMQGLALQTSNSIASSYGGKKKFSFLNVLDSLPSKKSIPTRRISPFSAGISSLLRCRALPKLQRRHSRIIPYASNVGVGSGSFEESQGNESHNVSVNQPSTDGSSKIEALPSKIPYPLAIALVLCGCSLVFSVIAFTKGGPSSLIAAFSKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKRIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="99096" PGL_stop="101628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99096" e_stop="99364"/>
            <exon e_start="100446" e_stop="101628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99096" e_stop="99364" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="100446" e_stop="101628" e_length="1183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99096" stop="99364"/>
              <exon start="100446" stop="100971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99111" stop="99364"/>
              <exon start="100446" stop="100595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99114" stop="99364"/>
              <exon start="100446" stop="100830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99116" stop="99364"/>
              <exon start="100446" stop="100763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99117" stop="99364"/>
              <exon start="100446" stop="100904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99117" stop="99364"/>
              <exon start="100446" stop="100867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99121" stop="99364"/>
              <exon start="100446" stop="100999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99121" stop="99364"/>
              <exon start="100446" stop="100984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99121" stop="99364"/>
              <exon start="100446" stop="100918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99121" stop="99364"/>
              <exon start="100446" stop="100829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99121" stop="99364"/>
              <exon start="100446" stop="100799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99129" stop="99364"/>
              <exon start="100446" stop="100984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99131" stop="99364"/>
              <exon start="100446" stop="100608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99154" stop="99364"/>
              <exon start="100446" stop="100885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99154" stop="99364"/>
              <exon start="100446" stop="100650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99168" stop="99364"/>
              <exon start="100446" stop="100910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99171" stop="99364"/>
              <exon start="100446" stop="100935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99172" stop="99364"/>
              <exon start="100446" stop="100790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99178" stop="99364"/>
              <exon start="100446" stop="100765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99183" stop="99364"/>
              <exon start="100446" stop="100834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99212" stop="99364"/>
              <exon start="100446" stop="100863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99225" stop="99364"/>
              <exon start="100446" stop="100764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100600" stop="101302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100810" stop="101292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100848" stop="101286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100873" stop="101302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100926" stop="101302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100928" stop="101456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100928" stop="101409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101195" stop="101628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTAAACAAAATCAAACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT : GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGGAATGTACTTGCTAAGCAGTTTTAACAGTTGCAGAAGGTGGTGTTCGCTCGAGATGGAGGTATTGAAGTTTACAGTGTTCTAATTGTTTCAGGGGTTTGATCATCTTGCTTTGGTTTTTACCCCTTTATGTAACGAAGCGTTCTGCAATGTATTGTCTATTTGTTTGAATAAAAGAAAGAAGATGGAACTTATATGCAGAGTTCTCTTCTCATTGTTGAATGATGATT</gDNA_template>
            <first_frame> L  S  K  Q  N  Q  T  K  P  L  F  H  F  F  L  F  Q  F  L  P  F  A  L  C  V  *  K  K  Q  *  K  W  R  I  W  T  Q  L  H  V  S  W  W  M  M  T  F  S  T  S  L  W  K  M  K  L  L  K  K  M  M  K  N  Q  L  L  L  A  K  T  H  F  L  I  L  L  R  L  Q  Q  T  L  L  L  A  F  F  P  T  L :   S  V  *  R  K  S  W  N  G  C  Q  T  K  M  H  F  Q  R  *  S  L  A  F  F  R  R  T  R  V  W  Y  L  I  T  I  A  R  F  Q  C  W  R  I  V  A  A  L  V  T  A  V  A  M  V  L  L  V  E  M  L  I  R  A  A  A  S  T  *  K  F  R  L  I  T  L  F  V  H  G  A  R  E  D  V  E  D  G  E  V  D  L  L  T  C  Q  A  S  I  V  C  R  *  H  N  R  V  S  R  T  L  S  S  V  S  H  C  F  L  Y  Q  *  I  Q  L  R  V  L  L  A  L  G  G  G  A  N  T  V  E  P  I  R  P  H  N  G  G  Q  A  L  W  G  Q  K  H  C  V  M  L  V  V  C  A  I  S  Q  A  G  C  Y  Q  S  I  A  R  L  I  A  L  L  S  R  L  L  R  I  Q  T  P  T  G  R  F  W  R  *  E  S  I  R  L  V  W  E  E  C  *  F  M  K  L  V  D  I  G  *  D  S  S  E  S  S  A  A  S  F  Q  I  F  F  F  I  Y  Y  S  *  H  R  L  *  V  F  V  V  M  V  L  M  V  G  D  L  L  W  F  S  I  K  I  H  *  E  F  *  T  S  L  F  Y  Y  M  L  L  R  *  K  S  R  K  K  S  S  *  Q  R  F  G  C  F  F  N  P  S  F  L  P  L  S  F  A  W  I  G  N  D  T  F  L  N  L  E  N  D  V  C  G  S  C  W  E  C  T  C  *  A  V  L  T  V  A  E  G  G  V  R  S  R  W  R  Y  *  S  L  Q  C  S  N  C  F  R  G  L  I  I  L  L  W  F  L  P  L  Y  V  T  K  R  S  A  M  Y  C  L  F  V  *  I  K  E  R  R  W  N  L  Y  A  E  F  S  S  H  C  *  M  M  I </first_frame>
            <second_frame>  S  L  N  K  I  K  P  N  P  Y  S  I  F  F  S  F  N  F  S  L  L  L  S  V  C  E  K  N  N  E  N  G  G  F  G  P  N  C  M  F  H  G  G  *  *  P  S  Q  L  L  F  G  R  *  N  C  *  R  R  *  *  K  I  N  Y  Y  *  Q  R  P  T  F  L  F  F  F  V  F  N  K  P  S  C  *  P  S  S  P  P   : *  V  C  R  G  R  V  G  M  A  V  K  Q  R  C  I  S  S  D  R  V  W  H  S  F  G  E  P  G  Y  G  I  *  S  P  *  P  G  F  S  A  G  E  *  *  Q  H  *  S  Q  Q  W  Q  W  C  C  *  W  K  C  L  Y  E  L  L  R  Q  L  K  S  S  G  *  L  P  C  S  C  T  E  Q  E  K  T  *  K  T  E  R  W  I  C  *  H  A  K  R  A  L  S  A  G  D  T  T  E  F  Q  E  R  *  A  A  *  A  I  A  F  F  T  N  E  F  S  *  E  C  C  *  H  W  E  E  V  P  T  L  W  S  R  *  D  P  T  M  A  G  R  P  S  G  A  K  N  T  V  *  C  L  W  C  A  L  *  V  R  Q  A  V  T  R  V  S  P  G  *  *  P  Y  F  L  G  C  C  A  F  K  L  P  P  E  G  F  G  D  E  K  A  *  D  W  C  G  R  N  V  D  S  *  S  L  W  I  *  G  R  T  V  V  S  H  L  Q  R  L  F  R  Y  F  S  S  F  T  I  V  S  I  D  Y  R  F  L  L  *  W  S  *  W  S  V  I  C  F  G  F  P  S  K  S  T  R  N  F  E  L  V  C  F  I  I  C  F  *  D  R  N  P  E  R  R  A  P  N  K  D  L  V  V  F  L  I  L  P  S  Y  L  C  H  L  H  G  L  E  M  I  H  F  *  I  L  R  M  M  F  V  A  V  A  G  N  V  L  A  K  Q  F  *  Q  L  Q  K  V  V  F  A  R  D  G  G  I  E  V  Y  S  V  L  I  V  S  G  V  *  S  S  C  F  G  F  Y  P  F  M  *  R  S  V  L  Q  C  I  V  Y  L  F  E  *  K  K  E  D  G  T  Y  M  Q  S  S  L  L  I  V  E  *  *   </second_frame>
            <third_frame>   L  *  T  K  S  N  Q  T  L  I  P  F  F  S  L  S  I  S  P  F  C  S  L  C  V  K  K  T  M  K  M  E  D  L  D  P  T  A  C  F  M  V  D  D  D  L  L  N  F  S  L  E  D  E  T  V  E  E  D  D  E  K  S  T  I  T  S  K  D  P  L  S  Y  S  S  S  S  S  T  N  P  L  V  S  L  L  P  H  P  :  E  C  V  E  E  E  L  E  W  L  S  N  K  D  A  F  P  A  I  E  F  G  I  L  S  E  N  P  G  M  V  F  D  H  H  S  P  V  S  V  L  E  N  S  S  S  T  S  H  S  S  G  N  G  V  V  S  G  N  A  Y  T  S  C  C  V  N  L  K  V  P  V  N  Y  P  V  R  A  R  S  K  R  R  R  R  R  R  R  G  G  F  A  D  M  P  S  E  H  C  L  P  V  T  Q  P  S  F  K  N  V  K  Q  R  E  P  L  L  S  L  P  M  N  S  A  K  S  A  A  S  I  G  R  R  C  Q  H  C  G  A  D  K  T  P  Q  W  R  A  G  P  L  G  P  K  T  L  C  N  A  C  G  V  R  Y  K  S  G  R  L  L  P  E  Y  R  P  A  N  S  P  T  F  S  A  A  A  H  S  N  S  H  R  K  V  L  E  M  R  K  H  K  I  G  V  G  G  M  L  I  H  E  A  C  G  Y  R  V  G  Q  *  *  V  I  C  S  V  F  S  D  I  F  L  H  L  L  *  L  A  *  T  I  G  F  C  C  N  G  L  D  G  R  *  F  A  L  V  F  H  Q  N  P  L  G  I  L  N  *  F  V  L  L  Y  A  F  K  I  E  I  Q  K  E  E  L  L  T  K  I  W  L  F  F  *  S  F  L  L  T  S  V  I  C  M  D  W  K  *  Y  I  F  E  S  *  E  *  C  L  W  Q  L  L  G  M  Y  L  L  S  S  F  N  S  C  R  R  W  C  S  L  E  M  E  V  L  K  F  T  V  F  *  L  F  Q  G  F  D  H  L  A  L  V  F  T  P  L  C  N  E  A  F  C  N  V  L  S  I  C  L  N  K  R  K  K  M  E  L  I  C  R  V  L  F  S  L  L  N  D  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99104" stop="99364"/>
                    <exon start="100446" stop="101099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKSNQTLIPFFSLSISPFCSLCVKKTMKMEDLDPTACFMVDDDLLNFSLEDETVEEDDEKSTITSKDPLSYSSSSSTNPLVSLLPHPECVEEELEWLSNKDAFPAIEFGILSENPGMVFDHHSPVSVLENSSSTSHSSGNGVVSGNAYTSCCVNLKVPVNYPVRARSKRRRRRRRGGFADMPSEHCLPVTQPSFKNVKQREPLLSLPMNSAKSAASIGRRCQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPANSPTFSAAAHSNSHRKVLEMRKHKIGVGGMLIHEACGYRVGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="101633" PGL_stop="100518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101633" e_stop="100518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="101633" e_stop="100518" e_length="1116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101633" stop="100870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101302" stop="100682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101268" stop="100518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATAATCATCATTCAACAATGAGAAGAGAACTCTGCATATAAGTTCCATCTTCTTTCTTTTATTCAAACAAATAGACAATACATTGCAGAACGCTTCGTTACATAAAGGGGTAAAAACCAAAGCAAGATGATCAAACCCCTGAAACAATTAGAACACTGTAAACTTCAATACCTCCATCTCGAGCGAACACCACCTTCTGCAACTGTTAAAACTGCTTAGCAAGTACATTCCCAGCAACTGCCACAAACATCATTCTCAAGATTCAAAAATGTATCATTTCCAATCCATGCAAATGACAGAGGTAAGAAGGAAGGATTAAAAAAACAACCAAATCTTTGTTAGGAGCTCTTCTTTCTGGATTTCTATCTTAAAAGCATATAATAAAACAAACTAGTTCAAAATTCCTAGTGGATTTTGATGGAAAACCAAAGCAAATCACCGACCATCAAGACCATTACAACAAAAACCTATAGTCTATGCTAACTATAGTAAATGAAGAAAAATATCTGAAAAGACGCTGCAGATGACTCACTACTGTCCTACCCTATATCCACAAGCTTCATGAATCAACATTCCTCCCACACCAATCTTATGCTTTCTCATCTCCAAAACCTTCCGGTGGGAGTTTGAATGCGCAGCAGCCGAGAAAGTAGGGCTATTAGCCGGGCGATACTCTGGTAACAGCCTGCCTGACTTATAGCGCACACCACAAGCATTACACAGTGTTTTTGGCCCCAGAGGGCCTGCCCGCCATTGTGGGGTCTTATCGGCTCCACAGTGTTGGCACCTCCTCCCAATGCTAGCAGCACTCTTAGCTGAATTCATTGGTAAAGAAAGCAATGGCTCACGCTGCTTAACGTTCTTGAAACTCGGTTGTGTCACCGGCAGACAATGCTCGCTTGGCATGTCAGCAAATCCACCTCTCCGTCTTCTACGTCTTCTCTTGCTCCGTGCACGAACAGGGTAATTAACCGGAACTTTTAAGTTGACGCAGCAGCTCGTATAAGCATTTCCACTAACAACACCATTGCCACTGCTGTGACTAGTGCTGCTACTATTCTCCAGCACTGAAACCGGGCTATGGTGATCAAATACCATACCCGGGTTCTCCGA</gDNA_template>
            <first_frame> N  I  I  I  I  Q  Q  *  E  E  N  S  A  Y  K  F  H  L  L  S  F  I  Q  T  N  R  Q  Y  I  A  E  R  F  V  T  *  R  G  K  N  Q  S  K  M  I  K  P  L  K  Q  L  E  H  C  K  L  Q  Y  L  H  L  E  R  T  P  P  S  A  T  V  K  T  A  *  Q  V  H  S  Q  Q  L  P  Q  T  S  F  S  R  F  K  N  V  S  F  P  I  H  A  N  D  R  G  K  K  E  G  L  K  K  Q  P  N  L  C  *  E  L  F  F  L  D  F  Y  L  K  S  I  *  *  N  K  L  V  Q  N  S  *  W  I  L  M  E  N  Q  S  K  S  P  T  I  K  T  I  T  T  K  T  Y  S  L  C  *  L  *  *  M  K  K  N  I  *  K  D  A  A  D  D  S  L  L  S  Y  P  I  S  T  S  F  M  N  Q  H  S  S  H  T  N  L  M  L  S  H  L  Q  N  L  P  V  G  V  *  M  R  S  S  R  E  S  R  A  I  S  R  A  I  L  W  *  Q  P  A  *  L  I  A  H  T  T  S  I  T  Q  C  F  W  P  Q  R  A  C  P  P  L  W  G  L  I  G  S  T  V  L  A  P  P  P  N  A  S  S  T  L  S  *  I  H  W  *  R  K  Q  W  L  T  L  L  N  V  L  E  T  R  L  C  H  R  Q  T  M  L  A  W  H  V  S  K  S  T  S  P  S  S  T  S  S  L  A  P  C  T  N  R  V  I  N  R  N  F  *  V  D  A  A  A  R  I  S  I  S  T  N  N  T  I  A  T  A  V  T  S  A  A  T  I  L  Q  H  *  N  R  A  M  V  I  K  Y  H  T  R  V  L  R </first_frame>
            <second_frame>  I  *  S  S  F  N  N  E  K  R  T  L  H  I  S  S  I  F  F  L  L  F  K  Q  I  D  N  T  L  Q  N  A  S  L  H  K  G  V  K  T  K  A  R  *  S  N  P  *  N  N  *  N  T  V  N  F  N  T  S  I  S  S  E  H  H  L  L  Q  L  L  K  L  L  S  K  Y  I  P  S  N  C  H  K  H  H  S  Q  D  S  K  M  Y  H  F  Q  S  M  Q  M  T  E  V  R  R  K  D  *  K  N  N  Q  I  F  V  R  S  S  S  F  W  I  S  I  L  K  A  Y  N  K  T  N  *  F  K  I  P  S  G  F  *  W  K  T  K  A  N  H  R  P  S  R  P  L  Q  Q  K  P  I  V  Y  A  N  Y  S  K  *  R  K  I  S  E  K  T  L  Q  M  T  H  Y  C  P  T  L  Y  P  Q  A  S  *  I  N  I  P  P  T  P  I  L  C  F  L  I  S  K  T  F  R  W  E  F  E  C  A  A  A  E  K  V  G  L  L  A  G  R  Y  S  G  N  S  L  P  D  L  *  R  T  P  Q  A  L  H  S  V  F  G  P  R  G  P  A  R  H  C  G  V  L  S  A  P  Q  C  W  H  L  L  P  M  L  A  A  L  L  A  E  F  I  G  K  E  S  N  G  S  R  C  L  T  F  L  K  L  G  C  V  T  G  R  Q  C  S  L  G  M  S  A  N  P  P  L  R  L  L  R  L  L  L  L  R  A  R  T  G  *  L  T  G  T  F  K  L  T  Q  Q  L  V  *  A  F  P  L  T  T  P  L  P  L  L  *  L  V  L  L  L  F  S  S  T  E  T  G  L  W  *  S  N  T  I  P  G  F  S   </second_frame>
            <third_frame>   Y  N  H  H  S  T  M  R  R  E  L  C  I  *  V  P  S  S  F  F  Y  S  N  K  *  T  I  H  C  R  T  L  R  Y  I  K  G  *  K  P  K  Q  D  D  Q  T  P  E  T  I  R  T  L  *  T  S  I  P  P  S  R  A  N  T  T  F  C  N  C  *  N  C  L  A  S  T  F  P  A  T  A  T  N  I  I  L  K  I  Q  K  C  I  I  S  N  P  C  K  *  Q  R  *  E  G  R  I  K  K  T  T  K  S  L  L  G  A  L  L  S  G  F  L  S  *  K  H  I  I  K  Q  T  S  S  K  F  L  V  D  F  D  G  K  P  K  Q  I  T  D  H  Q  D  H  Y  N  K  N  L  *  S  M  L  T  I  V  N  E  E  K  Y  L  K  R  R  C  R  *  L  T  T  V  L  P  Y  I  H  K  L  H  E  S  T  F  L  P  H  Q  S  Y  A  F  S  S  P  K  P  S  G  G  S  L  N  A  Q  Q  P  R  K  *  G  Y  *  P  G  D  T  L  V  T  A  C  L  T  Y  S  A  H  H  K  H  Y  T  V  F  L  A  P  E  G  L  P  A  I  V  G  S  Y  R  L  H  S  V  G  T  S  S  Q  C  *  Q  H  S  *  L  N  S  L  V  K  K  A  M  A  H  A  A  *  R  S  *  N  S  V  V  S  P  A  D  N  A  R  L  A  C  Q  Q  I  H  L  S  V  F  Y  V  F  S  C  S  V  H  E  Q  G  N  *  P  E  L  L  S  *  R  S  S  S  Y  K  H  F  H  *  Q  H  H  C  H  C  C  D  *  C  C  Y  Y  S  P  A  L  K  P  G  Y  G  D  Q  I  P  Y  P  G  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100930" stop="100664"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTPQALHSVFGPRGPARHCGVLSAPQCWHLLPMLAALLAEFIGKESNGSRCLTFLKLGCVTGRQCSLGMSANPPLRLLRLLLLRARTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="106268" PGL_stop="107056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106268" e_stop="107056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="106268" e_stop="107056" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106268" stop="107056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106268" stop="107040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAACATTCCCAAAGAGATTGGAAATTGCTCAAAATTGCAGTCTCTCCAGCTCCATTATAATACTTTTTACGGTCCAATTCCTGCTGAACTGTATAACCTGTCTAATTTGAAGGATGTGAACATTAGCAGCAACATGATCTCTGGTCCTATTGCTGAGGAGTTTGGGAAACTCTCATCTCTAGTTACTTTTGTTGCATACACCAATAATCTTACCGGTCCAGTGCCTCGATCTATTGGAAATTTGAAAAATTTGACAATATTTCGAGTGGGGCAGAATGCATTTTCTGGAAGTTTACCTACAGAGATAGGTGGTTGCGAGAGCTTGGAATCTCTTGGTCTAACACAGAATTGCCTGGAAGGAAACATACCGAAAGAACTTGGCATGCTTAGTAAGTTGAAAGAGCTTGTGCTTTGGGGAAATCAGTTCTCTGGTTATATTCCAAAGGAACTTGGAAATTTAACACAAATTCAATTGCTTGCTTTATATCAGAACAACCTGATTGGAGATATTCCTGCTGAAATAGGTAAACTGAAAAATTTGATGAAGTTATACCTATACCGGAATGGATTAAATGGTAGCATTCCAAGGGAGATTGGAAATCTTTCTATGGCAACAGAAATTGATTTCTCAGAAAACTTTCTGAAAGGAGAAATTCCAGTTGAGTTTGGCCAAATAAAAAGTCTGAGACTGTTGTTTCTTTTCCAGAATCAGCTCGAAGGCGTTATACCAGATGAACTTACTACTTTAAAGAATTTGGTTAGTCTTGATTTGTCAATTAATTACCTA</gDNA_template>
            <first_frame> G  N  I  P  K  E  I  G  N  C  S  K  L  Q  S  L  Q  L  H  Y  N  T  F  Y  G  P  I  P  A  E  L  Y  N  L  S  N  L  K  D  V  N  I  S  S  N  M  I  S  G  P  I  A  E  E  F  G  K  L  S  S  L  V  T  F  V  A  Y  T  N  N  L  T  G  P  V  P  R  S  I  G  N  L  K  N  L  T  I  F  R  V  G  Q  N  A  F  S  G  S  L  P  T  E  I  G  G  C  E  S  L  E  S  L  G  L  T  Q  N  C  L  E  G  N  I  P  K  E  L  G  M  L  S  K  L  K  E  L  V  L  W  G  N  Q  F  S  G  Y  I  P  K  E  L  G  N  L  T  Q  I  Q  L  L  A  L  Y  Q  N  N  L  I  G  D  I  P  A  E  I  G  K  L  K  N  L  M  K  L  Y  L  Y  R  N  G  L  N  G  S  I  P  R  E  I  G  N  L  S  M  A  T  E  I  D  F  S  E  N  F  L  K  G  E  I  P  V  E  F  G  Q  I  K  S  L  R  L  L  F  L  F  Q  N  Q  L  E  G  V  I  P  D  E  L  T  T  L  K  N  L  V  S  L  D  L  S  I  N  Y  L </first_frame>
            <second_frame>  G  T  F  P  K  R  L  E  I  A  Q  N  C  S  L  S  S  S  I  I  I  L  F  T  V  Q  F  L  L  N  C  I  T  C  L  I  *  R  M  *  T  L  A  A  T  *  S  L  V  L  L  L  R  S  L  G  N  S  H  L  *  L  L  L  L  H  T  P  I  I  L  P  V  Q  C  L  D  L  L  E  I  *  K  I  *  Q  Y  F  E  W  G  R  M  H  F  L  E  V  Y  L  Q  R  *  V  V  A  R  A  W  N  L  L  V  *  H  R  I  A  W  K  E  T  Y  R  K  N  L  A  C  L  V  S  *  K  S  L  C  F  G  E  I  S  S  L  V  I  F  Q  R  N  L  E  I  *  H  K  F  N  C  L  L  Y  I  R  T  T  *  L  E  I  F  L  L  K  *  V  N  *  K  I  *  *  S  Y  T  Y  T  G  M  D  *  M  V  A  F  Q  G  R  L  E  I  F  L  W  Q  Q  K  L  I  S  Q  K  T  F  *  K  E  K  F  Q  L  S  L  A  K  *  K  V  *  D  C  C  F  F  S  R  I  S  S  K  A  L  Y  Q  M  N  L  L  L  *  R  I  W  L  V  L  I  C  Q  L  I  T   </second_frame>
            <third_frame>   E  H  S  Q  R  D  W  K  L  L  K  I  A  V  S  P  A  P  L  *  Y  F  L  R  S  N  S  C  *  T  V  *  P  V  *  F  E  G  C  E  H  *  Q  Q  H  D  L  W  S  Y  C  *  G  V  W  E  T  L  I  S  S  Y  F  C  C  I  H  Q  *  S  Y  R  S  S  A  S  I  Y  W  K  F  E  K  F  D  N  I  S  S  G  A  E  C  I  F  W  K  F  T  Y  R  D  R  W  L  R  E  L  G  I  S  W  S  N  T  E  L  P  G  R  K  H  T  E  R  T  W  H  A  *  *  V  E  R  A  C  A  L  G  K  S  V  L  W  L  Y  S  K  G  T  W  K  F  N  T  N  S  I  A  C  F  I  S  E  Q  P  D  W  R  Y  S  C  *  N  R  *  T  E  K  F  D  E  V  I  P  I  P  E  W  I  K  W  *  H  S  K  G  D  W  K  S  F  Y  G  N  R  N  *  F  L  R  K  L  S  E  R  R  N  S  S  *  V  W  P  N  K  K  S  E  T  V  V  S  F  P  E  S  A  R  R  R  Y  T  R  *  T  Y  Y  F  K  E  F  G  *  S  *  F  V  N  *  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106268" stop="107056"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNIPKEIGNCSKLQSLQLHYNTFYGPIPAELYNLSNLKDVNISSNMISGPIAEEFGKLSSLVTFVAYTNNLTGPVPRSIGNLKNLTIFRVGQNAFSGSLPTEIGGCESLESLGLTQNCLEGNIPKELGMLSKLKELVLWGNQFSGYIPKELGNLTQIQLLALYQNNLIGDIPAEIGKLKNLMKLYLYRNGLNGSIPREIGNLSMATEIDFSENFLKGEIPVEFGQIKSLRLLFLFQNQLEGVIPDELTTLKNLVSLDLSINYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="108152" PGL_stop="107437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108152" e_stop="107437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="108152" e_stop="107437" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108152" stop="107437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGAGGAGAATCTGCACTCTCGACTCTAGGAGAATTATTGGCATCATAAGCTGGAGATGCGTTACATTCACCTAGAGGCCCACCACAAAGACCTTTGTTTCCAATGAAGCTGCTGATATCCATGTTCCGAAAGAGTGGTATATCCGGCAGTGGTCCAGTCAAGTCATTGTATGAGAAGTCAATACCCAAGAGACTTGTCAGGTTTCCAAATGTGCTTGGTATTTCACCACTCAAATGATTGTTGTTGAGATAAAGGTACTCTAATAGGATAAGATTACCAAGGTTAGGTGGTATACTTCCAGAGAGATTGTTATTGCTAAGATCCATTGCAATTTGTAAGCCACTAAGATTACCCAACTCTGATGGTATTTCACCTGACAGTAGATTACTGCCCATCTGCAGCTCAGTCAAATGAGAGAGGCTCCCCAATGCTGCTGGTATCTTTCCAGATAACTTATTCTCTGAAAGCAAAAGACGTTCTAGCTGCGACAAGCTACCAATGTCATCAGGTATAACATCAGTAAATCTGTTCTTGCTGAGATCCAGTCTTTGTAGTGCCTTGCAGTTACGAATTTCTGGAGGTATTGGTCCAGTGAGCAAATTTGCTGAGACATTGAATGTCACAAGCCTGGTAAGATTTCCTATCTCCTTAGGCAACTGGTTGAAACTATTGCCTGAGAAATCAAGCCTCTGCAACTTCTGGCAATATCCAATA</gDNA_template>
            <first_frame> L  E  E  N  L  H  S  R  L  *  E  N  Y  W  H  H  K  L  E  M  R  Y  I  H  L  E  A  H  H  K  D  L  C  F  Q  *  S  C  *  Y  P  C  S  E  R  V  V  Y  P  A  V  V  Q  S  S  H  C  M  R  S  Q  Y  P  R  D  L  S  G  F  Q  M  C  L  V  F  H  H  S  N  D  C  C  *  D  K  G  T  L  I  G  *  D  Y  Q  G  *  V  V  Y  F  Q  R  D  C  Y  C  *  D  P  L  Q  F  V  S  H  *  D  Y  P  T  L  M  V  F  H  L  T  V  D  Y  C  P  S  A  A  Q  S  N  E  R  G  S  P  M  L  L  V  S  F  Q  I  T  Y  S  L  K  A  K  D  V  L  A  A  T  S  Y  Q  C  H  Q  V  *  H  Q  *  I  C  S  C  *  D  P  V  F  V  V  P  C  S  Y  E  F  L  E  V  L  V  Q  *  A  N  L  L  R  H  *  M  S  Q  A  W  *  D  F  L  S  P  *  A  T  G  *  N  Y  C  L  R  N  Q  A  S  A  T  S  G  N  I  Q   </first_frame>
            <second_frame>  S  R  R  I  C  T  L  D  S  R  R  I  I  G  I  I  S  W  R  C  V  T  F  T  *  R  P  T  T  K  T  F  V  S  N  E  A  A  D  I  H  V  P  K  E  W  Y  I  R  Q  W  S  S  Q  V  I  V  *  E  V  N  T  Q  E  T  C  Q  V  S  K  C  A  W  Y  F  T  T  Q  M  I  V  V  E  I  K  V  L  *  *  D  K  I  T  K  V  R  W  Y  T  S  R  E  I  V  I  A  K  I  H  C  N  L  *  A  T  K  I  T  Q  L  *  W  Y  F  T  *  Q  *  I  T  A  H  L  Q  L  S  Q  M  R  E  A  P  Q  C  C  W  Y  L  S  R  *  L  I  L  *  K  Q  K  T  F  *  L  R  Q  A  T  N  V  I  R  Y  N  I  S  K  S  V  L  A  E  I  Q  S  L  *  C  L  A  V  T  N  F  W  R  Y  W  S  S  E  Q  I  C  *  D  I  E  C  H  K  P  G  K  I  S  Y  L  L  R  Q  L  V  E  T  I  A  *  E  I  K  P  L  Q  L  L  A  I  S  N  </second_frame>
            <third_frame>   R  G  E  S  A  L  S  T  L  G  E  L  L  A  S  *  A  G  D  A  L  H  S  P  R  G  P  P  Q  R  P  L  F  P  M  K  L  L  I  S  M  F  R  K  S  G  I  S  G  S  G  P  V  K  S  L  Y  E  K  S  I  P  K  R  L  V  R  F  P  N  V  L  G  I  S  P  L  K  *  L  L  L  R  *  R  Y  S  N  R  I  R  L  P  R  L  G  G  I  L  P  E  R  L  L  L  L  R  S  I  A  I  C  K  P  L  R  L  P  N  S  D  G  I  S  P  D  S  R  L  L  P  I  C  S  S  V  K  *  E  R  L  P  N  A  A  G  I  F  P  D  N  L  F  S  E  S  K  R  R  S  S  C  D  K  L  P  M  S  S  G  I  T  S  V  N  L  F  L  L  R  S  S  L  C  S  A  L  Q  L  R  I  S  G  G  I  G  P  V  S  K  F  A  E  T  L  N  V  T  S  L  V  R  F  P  I  S  L  G  N  W  L  K  L  L  P  E  K  S  S  L  C  N  F  W  Q  Y  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107736" stop="107437"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERLPNAAGIFPDNLFSESKRRSSCDKLPMSSGITSVNLFLLRSSLCSALQLRISGGIGPVSKFAETLNVTSLVRFPISLGNWLKLLPEKSSLCNFWQYPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="110106" PGL_stop="109621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110106" e_stop="109621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="110106" e_stop="109621" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110106" stop="109621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGAAAAGCATAAAGCATATTATTTTCCATAACCTTCAGATGGAGAACTATTGAAATAACATCAATCACCTCCAAACTAGTTCTAGAAAGTGATTGATGAAATTTTCACTATGAGAAATATACATGGGAATATCTATAATTTAGCCATTAAGAAAAAAAAATACAAGGAGAATTAGTACTAAAAAATTATCAAAGTTAATTGAGATGTGCTTCTTACATGCTCATCTAGAAGGAATTATCTTTCAGAGGGAGATCATAAACTGGAGATGAGATAAAGTTCCCTTCTTGCTCATCAGACTCAATCAGCATCAGAACAACCTCGCGCATTGAAGGACGATCATACGGGGACATGCTAGTGCACATTAGAGCAATTTTAAGAACTGTAAGCATATGACTAACAGTAATTACATCTTCCAAATCCAATCGGCTATCGAGTACCCCTGGTGTCAATGAATGGTTCCTAACATAATGCTTCACCCATGTGA</gDNA_template>
            <first_frame> *  E  K  H  K  A  Y  Y  F  P  *  P  S  D  G  E  L  L  K  *  H  Q  S  P  P  N  *  F  *  K  V  I  D  E  I  F  T  M  R  N  I  H  G  N  I  Y  N  L  A  I  K  K  K  K  Y  K  E  N  *  Y  *  K  I  I  K  V  N  *  D  V  L  L  T  C  S  S  R  R  N  Y  L  S  E  G  D  H  K  L  E  M  R  *  S  S  L  L  A  H  Q  T  Q  S  A  S  E  Q  P  R  A  L  K  D  D  H  T  G  T  C  *  C  T  L  E  Q  F  *  E  L  *  A  Y  D  *  Q  *  L  H  L  P  N  P  I  G  Y  R  V  P  L  V  S  M  N  G  S  *  H  N  A  S  P  M  * </first_frame>
            <second_frame>  E  K  S  I  K  H  I  I  F  H  N  L  Q  M  E  N  Y  *  N  N  I  N  H  L  Q  T  S  S  R  K  *  L  M  K  F  S  L  *  E  I  Y  M  G  I  S  I  I  *  P  L  R  K  K  N  T  R  R  I  S  T  K  K  L  S  K  L  I  E  M  C  F  L  H  A  H  L  E  G  I  I  F  Q  R  E  I  I  N  W  R  *  D  K  V  P  F  L  L  I  R  L  N  Q  H  Q  N  N  L  A  H  *  R  T  I  I  R  G  H  A  S  A  H  *  S  N  F  K  N  C  K  H  M  T  N  S  N  Y  I  F  Q  I  Q  S  A  I  E  Y  P  W  C  Q  *  M  V  P  N  I  M  L  H  P  C   </second_frame>
            <third_frame>   R  K  A  *  S  I  L  F  S  I  T  F  R  W  R  T  I  E  I  T  S  I  T  S  K  L  V  L  E  S  D  *  *  N  F  H  Y  E  K  Y  T  W  E  Y  L  *  F  S  H  *  E  K  K  I  Q  G  E  L  V  L  K  N  Y  Q  S  *  L  R  C  A  S  Y  M  L  I  *  K  E  L  S  F  R  G  R  S  *  T  G  D  E  I  K  F  P  S  C  S  S  D  S  I  S  I  R  T  T  S  R  I  E  G  R  S  Y  G  D  M  L  V  H  I  R  A  I  L  R  T  V  S  I  *  L  T  V  I  T  S  S  K  S  N  R  L  S  S  T  P  G  V  N  E  W  F  L  T  *  C  F  T  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0022M02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 245 chains have been computed
$ 
$ memory statistics:
$ 452496 bytes spliced alignments in total
$ 138 spliced alignments have been stored
$ 3278 bytes was the average size of a spliced alignment
$ 31400 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1652 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 271 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:56:45
-->
