<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:34:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366155" ref_strand="+" ref_description="SGN-E366155 [cLPT-1-A11]">
      <seq>caaaatcatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggcccacaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcaccttacttgatggagagatggtaattgatactttgcctgacacacagaagcacgaaaggagatacctaatttatgatatgattgctttgaaccaattgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttattatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacgaaacttctcaaagaatgtatcccaaagctttcacatgaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="2028" stop="5595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2328" g_stop="2378" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2379" i_stop="2600" i_length="222">
            <donor d_prob="0.091" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2601" g_stop="2647" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="98" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2648" i_stop="4430" i_length="1783">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4431" g_stop="4593" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="261" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4594" i_stop="4715" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4716" g_stop="4853" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="399" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4854" i_stop="4984" i_length="131">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4985" g_stop="5107" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="522" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5108" i_stop="5211" i_length="104">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5212" g_stop="5295" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="606" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E366155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2328" e_stop="2378"/>
          <exon e_start="2601" e_stop="2647"/>
          <exon e_start="4431" e_stop="4593"/>
          <exon e_start="4716" e_stop="4853"/>
          <exon e_start="4985" e_stop="5107"/>
          <exon e_start="5212" e_stop="5295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGAT</genome_strand>
        <mrna_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACCTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCACGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATGTATCCCAAAGCTTTCACATGAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366157" ref_strand="+" ref_description="SGN-E366157 [cLPT-1-A13]">
      <seq>gacagttctgttatcaagcactgaaaatgaccccaggggggagaggcccacaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcaccttacttgatggagagatggaaattgatactttgcctgacacacagaagcaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="2041" stop="5101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2341" g_stop="2378" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2379" i_stop="2600" i_length="222">
            <donor d_prob="0.091" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2601" g_stop="2647" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="85" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2648" i_stop="4430" i_length="1783">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4431" g_stop="4593" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="248" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4594" i_stop="4715" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4716" g_stop="4801" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="334" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E366157" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2341" e_stop="2378"/>
          <exon e_start="2601" e_stop="2647"/>
          <exon e_start="4431" e_stop="4593"/>
          <exon e_start="4716" e_stop="4801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAG</genome_strand>
        <mrna_strand>GACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGGAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACCTTACTTGATGGAGAGATGGAAATTGATACTTTGCCTGACACACAGAAGCAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242569" ref_strand="+" ref_description="SGN-E242569 [cLED-30-N1]">
      <seq>gcacagtttcctggttcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgctacatggaaggctgatgggacacgatatatgatgctgatcacaatggatggctgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagctgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgatggccctgaaccatgtgtctgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="2311" stop="5412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2610" g_stop="2647" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2648" i_stop="4430" i_length="1783">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4431" g_stop="4593" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="201" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4594" i_stop="4715" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4716" g_stop="4853" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="339" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4854" i_stop="4984" i_length="131">
            <donor d_prob="0.790" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4985" g_stop="5107" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="462" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5108" i_stop="5211" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5212" g_stop="5223" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="474" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E242569" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2610" e_stop="2647"/>
          <exon e_start="4431" e_stop="4593"/>
          <exon e_start="4716" e_stop="4853"/>
          <exon e_start="4985" e_stop="5107"/>
          <exon e_start="5212" e_stop="5223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAG</genome_strand>
        <mrna_strand>GCACAGTTTCCTGGTTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCTACATGGAAGGCTGATGGGACACGATATATGATGCTGATCACAATGGATGGCTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCTGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATGGCCCTGAACCATGTGTCTGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343500" ref_strand="+" ref_description="SGN-E343500 [cTOF-19-M23]">
      <seq>gatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgattgctttgaaccaattgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttattatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacgaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgtacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctctttgaggtggttgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgatgaccaaaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="4206" stop="7890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4506" g_stop="4593" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4594" i_stop="4715" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4716" g_stop="4853" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="226" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4854" i_stop="4984" i_length="131">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4985" g_stop="5107" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="349" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5108" i_stop="5211" i_length="104">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5212" g_stop="5310" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="448" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5311" i_stop="5675" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5676" g_stop="5765" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="538" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5766" i_stop="6073" i_length="308">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6074" g_stop="6155" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="620" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6156" i_stop="7518" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7519" g_stop="7590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="692" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E343500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4506" e_stop="4593"/>
          <exon e_start="4716" e_stop="4853"/>
          <exon e_start="4985" e_stop="5107"/>
          <exon e_start="5212" e_stop="5310"/>
          <exon e_start="5676" e_stop="5765"/>
          <exon e_start="6074" e_stop="6155"/>
          <exon e_start="7519" e_stop="7590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGA</genome_strand>
        <mrna_strand>GATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244572" ref_strand="+" ref_description="SGN-E244572 [cLED-38-H13]">
      <seq>tgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtaacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcactcatgagggtctcttgaagtggaaataccctgaaatgaactcagttgactttctgtttgaggtgatcgatgatcgtgaattgctgtatctacatgaacgagggaagaagaaactaatggaggggaatagagttattttcccagatggttctgatccgtcagcctactctgataaaataatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="4681" stop="7857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4844" g_stop="4853" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4854" i_stop="4984" i_length="131">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4985" g_stop="5107" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="133" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5108" i_stop="5211" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5212" g_stop="5310" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5311" i_stop="5675" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5676" g_stop="5765" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5766" i_stop="6073" i_length="308">
            <donor d_prob="0.741" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6074" g_stop="6155" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="404" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6156" i_stop="7518" i_length="1363">
            <donor d_prob="0.261" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7519" g_stop="7557" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="443" r_length="39" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E244572" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4844" e_stop="4853"/>
          <exon e_start="4985" e_stop="5107"/>
          <exon e_start="5212" e_stop="5310"/>
          <exon e_start="5676" e_stop="5765"/>
          <exon e_start="6074" e_stop="6155"/>
          <exon e_start="7519" e_stop="7557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAG</genome_strand>
        <mrna_strand>TGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTAACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACTCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCAGTTGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGATCGATGATCGTGAATTGCTGTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAATAGAGTTATTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCGTCAGCCTACTCTGATAAAATAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239863" ref_strand="+" ref_description="SGN-E239863 [cLED-29-F4]">
      <seq>tgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtaacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="4681" stop="5997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4844" g_stop="4853" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4854" i_stop="4984" i_length="131">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4985" g_stop="5107" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="133" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5108" i_stop="5211" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5212" g_stop="5310" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5311" i_stop="5675" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5676" g_stop="5697" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="254" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E239863" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4844" e_stop="4853"/>
          <exon e_start="4985" e_stop="5107"/>
          <exon e_start="5212" e_stop="5310"/>
          <exon e_start="5676" e_stop="5697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTC</genome_strand>
        <mrna_strand>TGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTAACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365643" ref_strand="+" ref_description="SGN-E365643 [cLPT-12-H22]">
      <seq>gatttttttctgctctctactgtcacgaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgtacgcatgagggtctcttgaagtggaaatatcctgaaatgaactcggtcgactttctctttgaggtggttgatgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccaggtcagaaatccccagttatatcagttatatacttgaggtgtcatgaaggattgtttcccttaattggggtttagttgggaatataagagactaatatcatccacagtccacactcattaattttatctttttggaactgtgaactcgttaagattttattgctgtcttgtatacttactgagccgggtggatgttttttcttaataaaattttattgtggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="4924" stop="6679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5224" g_stop="5310" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5311" i_stop="5675" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5676" g_stop="5765" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="177" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5766" i_stop="6073" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6074" g_stop="6379" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="483" r_length="306" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E365643" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5224" e_stop="5310"/>
          <exon e_start="5676" e_stop="5765"/>
          <exon e_start="6074" e_stop="6379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGA</genome_strand>
        <mrna_strand>GATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATATCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTTGATGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTATATACTTGAGGTGTCATGAAGGATTGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366156" ref_strand="+" ref_description="SGN-E366156 [cLPT-1-A11](-)">
      <seq>cggtcgactttctctttgaggtggttgatgatcgtgaattgctttatctacatgatcgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggtatgtacaagcagctttagttcttaggcgtgttttgtgtactatactgggttcacactgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="5446" stop="8325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5746" g_stop="5765" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5766" i_stop="6073" i_length="308">
            <donor d_prob="0.741" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6074" g_stop="6155" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="102" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6156" i_stop="7518" i_length="1363">
            <donor d_prob="0.261" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7519" g_stop="7649" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="233" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7650" i_stop="7800" i_length="151">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7801" g_stop="8036" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="469" r_length="236" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E366156" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5746" e_stop="5765"/>
          <exon e_start="6074" e_stop="6155"/>
          <exon e_start="7519" e_stop="7649"/>
          <exon e_start="7801" e_stop="8036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGA</genome_strand>
        <mrna_strand>CGGTCGACTTTCTCTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTTGATGATCGTGAATTGCTTTATCTACATGATCGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGTATGTACAAGCAGCTTTAGTTCTTAGGCGTGTTTTGTGTACTATACTGGGTTCACACTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551595" ref_strand="+" ref_description="SGN-E551595 [cTSB-1-D4]">
      <seq>gacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggcatgtacaagcagccttagttcctaggcgtgttttgtgtgctatactgggtttgttatatggatccagttggcacactgtaaacttagtggtccatgactcgggccttgtgttttttcttcgttagcgatgaggttgtcttgtatattatagttgttttagttcactttttttttacctggttactgttatgttgtctaaggtaggttttaaactttcaagctctatgcgatctattcccttgtgaatacaaaattgttctactagttatttctagtttatcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="7311" stop="135401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7611" g_stop="7649" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7650" i_stop="7800" i_length="151">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7801" g_stop="8256" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="495" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8257" i_stop="8577" i_length="321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8578" g_stop="8601" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="519" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E551595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7611" e_stop="7649"/>
          <exon e_start="7801" e_stop="8256"/>
          <exon e_start="8578" e_stop="8601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATCATTTGCCTTCTTTCAGTATATTCATTAAGACTTAATTTGCATACTGGGCATTGTGCACACTATGAGAATAATACAATAGACTTCTCTGGTATTTTTATTGATCAATCTCCTTTGAAGATGGTCATATAGCTTAAGATAATGTTTGTATTGAATAATTAATAATCGATTTCCATGGAAAACTTTCAACAAATTACAATTAAAGATATGCTCTATAACTTTAACTATTATTGGAGATCAAATATATTTTAGTATATTGTGTACATTTAAAATTTAAGATCACTAAGTTCAAAAATAGTTTTTTAAATTTTAAACTCGCTCTTAGTCAAAAAAACAAACTGAAAACTAA</genome_strand>
        <mrna_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATCA.................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555362" ref_strand="+" ref_description="SGN-E555362 [cTSC-2-D4]">
      <seq>gacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggcatgtacaagcagccttagttcctaggcgtgttttgtgtgctatactgggtttgttatatggatccagttggcacactgtaaacttagtggtccatgactcgggccttgtgttttttcttcgttagcgatgaggttgtcttgtatattatagttgttttagttcactttttttttacctggttactgttatgttgtctaaggtaggttttaaactttcaagctctatgcgatctattcccttgtgaatacaaaattgttctactagttatttctagtttatcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="7311" stop="135401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7611" g_stop="7649" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7650" i_stop="7800" i_length="151">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7801" g_stop="8256" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="495" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8257" i_stop="8577" i_length="321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8578" g_stop="8601" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="519" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E555362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7611" e_stop="7649"/>
          <exon e_start="7801" e_stop="8256"/>
          <exon e_start="8578" e_stop="8601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATCATTTGCCTTCTTTCAGTATATTCATTAAGACTTAATTTGCATACTGGGCATTGTGCACACTATGAGAATAATACAATAGACTTCTCTGGTATTTTTATTGATCAATCTCCTTTGAAGATGGTCATATAGCTTAAGATAATGTTTGTATTGAATAATTAATAATCGATTTCCATGGAAAACTTTCAACAAATTACAATTAAAGATATGCTCTATAACTTTAACTATTATTGGAGATCAAATATATTTTAGTATATTGTGTACATTTAAAATTTAAGATCACTAAGTTCAAAAATAGTTTTTTAAATTTTAAACTCGCTCTTAGTCAAAAAAACAAACTGAAAACTAA</genome_strand>
        <mrna_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATCA.................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747097" ref_strand="+" ref_description="SGN-E747097 [GI|18921039]">
      <seq>ctttaagcccagcagcagcccgttttcgcatttcccaagattctctgcaaaatctttatataattgcccctaaaaccccattttttacatacccatttcttcttcttcaatatcttgctctgtgatcatctgtactcatctagtagaacccttttagcttctctttgttttgttttttttgggtcaatttagtcatgggaggaggagatcacggcggcaaatcggatatctcattcgccggaatattcgcaagtagcgcctttgctgcttgtttcgctgaggcgtgtactttaccattggatactgctaaagttagacttcagcttcaaaagaaggcagttgaaggggatgggctaggtttacctaaatataggggattattaggtactgttgggaccattgcaaaggaagaaggagtagcttcactatggaagggtatcgtacctgggttacatcgtcaatgtatatacggaggtcttcggattgggatgtatgaacctgttaaaaacttatatgttggcaaagatcatgttggggatgtgccattgtctaagaaaatacttgctgcacttacaactggtgcgttgggcattacagttgcaaatcctacagatctagttaaagtacgtcttcaagctgaagggaaattgccagcaggcgtgccaaggcgttattctggagctctaaatgcttactcaactatagtgaaacaggaaggagttcgagctctgtggactggtcttggacccaatattgggcggaatgccatcatcaatgcagctgaattagcaagttatgatcaagtgaaggaggctgttctcaggattcctgggttcacagacaatgttgttactcatttgattgcggggcttggagctggattttttgcagtttgcatagggtcccctgttgatgtggtaaagtcaagaatgatgggagattccgcatacaaaaacactcttgattgttttgtcaagacattgaagaatgatgggcctttggctttctataaaggctttatcccaaattttggacgcttgggatcgtggaatgtcattatgtttctaacattggagcaggcgaagaagttcgttaaaaatttagaatcaccttgatgtcaaagagggatggatcatcaaacagaggattactaatttacatgaaacatggattttcattacaagatggaatcgaacaaagatatttttcaatattccccttcttttgtttttcgcgaataattcccattggagagaacccatagaaaccagctcagaagcatttagtttttccattttttaggggaccttactcttactattcttagactgcaaaatgtttgtccttccttctggttgccaggggattctattactgattcatggaattgactccatttataaacaatgaagattgaacttgagctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="20600" stop="14853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20304" g_stop="20024" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20023" i_stop="18846" i_length="1178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18845" g_stop="18627" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="500" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18626" i_stop="18538" i_length="89">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18537" g_stop="18459" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="579" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18458" i_stop="18217" i_length="242">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18216" g_stop="18083" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="713" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18082" i_stop="17439" i_length="644">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17438" g_stop="17340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="812" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17339" i_stop="17217" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17216" g_stop="17112" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="917" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17111" i_stop="16149" i_length="963">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16148" g_stop="16074" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="992" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16073" i_stop="15764" i_length="310">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15763" g_stop="15677" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="993" r_stop="1079" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15676" i_stop="15503" i_length="174">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15502" g_stop="15153" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1080" r_stop="1429" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E747097" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20304" e_stop="20024"/>
          <exon e_start="18845" e_stop="18627"/>
          <exon e_start="18537" e_stop="18459"/>
          <exon e_start="18216" e_stop="18083"/>
          <exon e_start="17438" e_stop="17340"/>
          <exon e_start="17216" e_stop="17112"/>
          <exon e_start="16148" e_stop="16074"/>
          <exon e_start="15763" e_stop="15677"/>
          <exon e_start="15502" e_stop="15153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAAGCACAGCAGCAGCCCGTTTTCGCATTTCCCAAGATTCTCTGCAAAATCTTTATATAATTGCCCCTAAAACCCCATTTTTTACATACCCATTTCTTCTTCTTCAATATCTTGCTCTGTGATCATCTGTACTCATCTAGTAGAACCCTTTTAGCTTCTCTTTGTTTTGTTTTTTTTGGGTCAATTTAGTCATGGGAGGAGGAGATCACGGCGGCAAATCGGATATCTCATTCGCCGGAATATTCGCAAGTAGCGCCTTTGCTGCTTGTTTCGCTGAGGTAATTCTTCCATCTATCTAATCTCTTTTTTGCAATCTTTTCTTGAAATTTGCAGTCTTATATCTGTTTCTAAGATTTTGATGATTCGAATAGGAGAAATGGGGTTGTTCCTTTTTCTTTTTTCTTTTTTGGTTTCTGGATTGGGGAATTGCTGATCCCATTGAGCTGTTAAGTGTTTATGAGTTTATAATCCTCTGTTAAATCCTTTACTGGGTTGCTTTGCTGGTAAATTTAAATTTTGTTTTGATCTCCTAATGCTGTATGTTTGTATTAAGGTGCAATCTGTTTGGGAAGATAAATGAGTCTCTTGGTTGAGTGTTCGAGTCATGCGGGAGGGTAAGACGTAAGTGAGAACATTATTGATCGTCCTTTTAGGGGGATTTGTTCCGGCAGATAAGTGAGGCTCGTTTGGAGGTTCGAGTCACACTGGAGGATAAGTAGGAACACTATTGATCCTCCTTTTTAGGGGGTGGTGCATCTGTTTCAGCAGATGAGTGAGGCTTGGTTGGAGGTGCGACTCACACTGGAGGGTATGTAGGAATTCTATTGATCCTCCTTTTAAGGGGGTGGGGAATCTGTTTCGGCAGATAAGTGAGGTTTGATTGAGGGTTCGAGTCACACTGGAGGGTCAGTAGGGAAACAATTGATCCTCCTAGAAGTAAGTGAGGCTTGGTTTGTTCTATCTTTAGTTAAGAGATTAATCACCTTACTATAGCATCTGTTAAGAAGGGAAAAATCACCTTACTATAGCATCTGTTAAGAAGGGAAAGGGGATACCAGATGACCTTTAAACAAGGTGATGATGGTACAAAAAAATTTGTACTCATGCTTCCTTAAAAATAATTGCTTGTAGAAATTTGGTGGACTTGATTGTGATAATACTTTTGTGAAAAAACATGTCTTGCTTAAATTTGGAGGAATCAGTTTTCTTTCTATTGCTTTTCATGAAGCTAGGCCTTGATTACATATGTGGTTTCCAATAAAAAAGTGTGTTGCTTATGGTTGTAGGAAATGAGGTTTCTTTAAGTTTTGATGCCGTCTTTTGGGTCATCCGGCATGTATGTTGTAGACATGTAGTAGATTCTTTTGAAGTGTGCATGCTGTGCTATTGTTCCTGTTGATGATTCCTTCATTGCCTGTTAATCTTGTTCCCTTCATACACAATTCTGTTTCTCCAGGCGTGTACTTTACCATTGGATACTGCTAAAGTTAGACTTCAGCTTCAAAAGAAGGCAGTTGAAGGGGATGGGCTAGGTTTACCTAAATATAGGGGATTATTAGGTACTGTTGGGACCATTGCAAAGGAAGAAGGAGTAGCTTCACTATGGAAGGGTATCGTACCTGGGTTACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCTGTAAGTTATCATTTCTAGCGTAGCTTACAACATCTACATGTTTATTTTGTGGTTTTTGGTCTTTTACGGACTCTTTGCTTGGTGAGCAGGTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTGGTGAGTGCCTTTTAGATGTTTTTTGTTTATCATCAGTTTGCTCAAGAGTAAGATAGTAGAGCTTTTATTTCCATTTTGAAAACATCCCGATAGGAACTAGAAATTCAGTGTTTGATTATCAATAACGGATGTTCTGTTTTTCCTTGTATTGTTCTTTTTGCTGTTTGGTATTTCAAAATGTTTTTAAGTAATTTGGTATTTTAATATATTTTAAAGTAATTTGGTTATTCTTTGTCAAATAGGTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGCCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAGGTAATATGTCTTGTCTAGCTCAATTATTTACCAAAATTATGATAACTAACGGCAGGTAGGGTTGTGAAATTGTGTACACCTACTTTGGATCATGACTTGGAGCTAATTTGCCCCTTGAATTGAAATTCAAAACAACCTAAACAATAATCCGTGTTGCTATTTGAAGTCCCACAATGTCTACCAATAAAGCAGGCATACAATCTGCAAAAGTATTTGCCTTTAGTATGTAACATTTAACAACTATTATGACCCCAGAATTGGAGACATAACATTTCTTAATGATTCCTTTGTTGGCCTATTATTAGATAACTGATTCCTTGTTCAACTTTCTCCTTCTTTATCTAATTTTGGTGTATTTGTTCATCCTTCCCGGAGAAAAGAGTAGTGCTTTTCTTCTCCGTGTAGTTTCTGTTCTCCTGGAAATGTTAGGAAATTATGAAAATTTCCATTTCATTTAAATCAATCTAAACTCCAAGGTCAGCAGCTTACTGGACCACTTGCAAAATAATGAAAATAGAACAGGTTTCACTAGTGAAAATTTGAGTTAACTCACGTTGAGTCAATAGTTCTCCCCACAAAAAAGACTCTTATTTTAACTCTTATCTTAACCTCTTCGCATTTTGTTTTTAACCCCTTGATTTTAGGAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTAGCAAGTTATGATCAAGTGAAGGAGGTAGAGAAACCATAAATTTCTTATTACCACCTCATTTTATGTACAGTAATGTGGTATTTTCTTGATTTGGATGTTTATGCTGTCAATCTTTTGACTTGTCGTTCTTTAAATATTTCTGTGCAGGCTGTTCTCAGGATTCCTGGGTTCACAGACAATGTTGTTACTCATTTGATTGCGGGGCTTGGAGCTGGATTTTTTGCAGTTTGCATAGGGTCCCCTGTTGATGTGGTATCTTCTATGTTCCTTATTATTTGAATTGCTTTTCTTTTAGTCCTATCTGATGGCTACCCATGATTCAGTAATATTTGTTAATATTTTAGATCTTCTTGCCCAAATAGAGGATCTTCTTGGACACATAGGGGAAATGTTATGCATATAGTCTTACTTTGCATGAAAAAGTATCTAACCTGTTAGACACACACCTTCATCTTGTGAGTTTGAAGTCCTCTGCTTGCGAGTTCTCTTTAGTATTGTGCAGTGCTTGCACAATAATAAATCTCTAGTTTGGCTGGGGTAAATGGAGGAGGGATTAAAGGTTGAAAGTAACATTGGGAGTGTAAGGGGATTGTTTTGTAATTAAAAGAGGATCACTGGTAAAATATAAATAAAGAGGGATAATCCGTCCTAAATTGGGTGGAAGCCTGTCGGGGCGATTAAAGGTTAAAGTAACCTTGGAAGTGTTAAGGGGATGTTTTGTAATTAAAAGAGGATCACTGGTAAAACATAAATAAGAGGGATAATCCGTCCTAAAATTGGGTGGAAGCCTGTCTATTTTACTTCTATTCAGCCATAGAGAGAATCATACACAAATATAGATAATTCTTTTAGGGAGAGGTAAGTTAGTTTTTCTTTTCTGCACTCTTTCCTCCCCCTTCCTGGAATCAAACATAGTAGAACTGGGGTCAATAGTACTGATATATTGTTACTTGGTCATGTATGATGGTAATACAATTTTTTTTTCCAAATTCATGTTCTTAGTAAGTTCACCAATCACCAAAATACTTCTTATATTTTGGTTAGGTGATTTTTATTCAATACTAAAAATCTTTTAGATCACCATTTTTAATCTGTCTTCTAATTTCATCCATGTAAAGTTGCAATATCCGTAGACTTGTAAAAACCTATTAGATTAATTTTGTTGATAATTCTTGCATAGCCATGAAGCACTGACATGGTAAACTGTGGATGCAGGTAAAGTCAAGAATGATGGGAGATTCCGCATACAAAAACACTCTTGATTGTTTTGTCAAGACATTGAAGAATGATGTGAGTTCATCATCTGGCCTCTCTATTGGTTATTGAAGAATCCAGCCGTTCTGCAGACATAAATTTTCCTCTTGTTTTTTTTAAATAACTTATCTTGGCTTCTTACAAGATGCAGAACTCTACCCAAAACAACATAACCTCTCATTTCTCTCAAGATAGTTTAAATTTTTATTAAAACCAGCTCCCTATTTTGTCAAATTTCCCCTGCTATTAGTTTTTTGTTTGTGTAGTTTTCAGTTCATTGCCAACAGCAACCTTTGTGTAATGACATTAAAAATGACACTTGTCTTGTTGGCCTTTATGTTTGCAGGGGCCTTTGGCTTTCTATAAAGGCTTTATCCCAAATTTTGGACGCTTGGGATCGTGGAATGTCATTATGTTTCTAACATTGGAGCAGGTAAACTATTGTTGATAAAACTTTATGCCAGATTACTATCCCAGACTAGCACATGTTTTGCTTCAACGAGAGGCGTTCTCAATTTCCAGTAGCTTCCTGTTCACTTGGCAACACTTTGTTCCATTAGGCTTTGAAAAATAAGTGGCTTACCCTTTATTTCTTATTTTTTGGCAGGCGAAGAAGTTCGTTAAAAATTTAGAATCACCTTGATGTCAAAGAGGGATGGATCATCAAACAGAGGATTACTAATTTACATGAAACATGGATTTTCATTACAAGATGGAATCGAACAAAGATATTTTTCAATATTCCCCTTCTTTTGTTTTTCGCGAATAATTCCCATTGGAGAGAACCCATAGAAACCAGCTCAGAAGCATTTAGTTTTTCCATTTTTTAGGGGACCTTACTCTTACTATTCTTAGACTGCAAAATGTTTGTCCTTCCTTCTGGTTGCCAGGGGATTCTATTACTGATTCATGGAATTGACTCCATTTATAAACAATGAAGATTGAACTTGAGCTGTG</genome_strand>
        <mrna_strand>CTTTAAGCCCAGCAGCAGCCCGTTTTCGCATTTCCCAAGATTCTCTGCAAAATCTTTATATAATTGCCCCTAAAACCCCATTTTTTACATACCCATTTCTTCTTCTTCAATATCTTGCTCTGTGATCATCTGTACTCATCTAGTAGAACCCTTTTAGCTTCTCTTTGTTTTGTTTTTTTTGGGTCAATTTAGTCATGGGAGGAGGAGATCACGGCGGCAAATCGGATATCTCATTCGCCGGAATATTCGCAAGTAGCGCCTTTGCTGCTTGTTTCGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTACTTTACCATTGGATACTGCTAAAGTTAGACTTCAGCTTCAAAAGAAGGCAGTTGAAGGGGATGGGCTAGGTTTACCTAAATATAGGGGATTATTAGGTACTGTTGGGACCATTGCAAAGGAAGAAGGAGTAGCTTCACTATGGAAGGGTATCGTACCTGGGTTACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCT.........................................................................................GTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTG..................................................................................................................................................................................................................................................GTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGCCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTAGCAAGTTATGATCAAGTGAAGGAG...........................................................................................................................GCTGTTCTCAGGATTCCTGGGTTCACAGACAATGTTGTTACTCATTTGATTGCGGGGCTTGGAGCTGGATTTTTTGCAGTTTGCATAGGGTCCCCTGTTGATGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGTCAAGAATGATGGGAGATTCCGCATACAAAAACACTCTTGATTGTTTTGTCAAGACATTGAAGAATGAT......................................................................................................................................................................................................................................................................................................................GGGCCTTTGGCTTTCTATAAAGGCTTTATCCCAAATTTTGGACGCTTGGGATCGTGGAATGTCATTATGTTTCTAACATTGGAGCAG..............................................................................................................................................................................GCGAAGAAGTTCGTTAAAAATTTAGAATCACCTTGATGTCAAAGAGGGATGGATCATCAAACAGAGGATTACTAATTTACATGAAACATGGATTTTCATTACAAGATGGAATCGAACAAAGATATTTTTCAATATTCCCCTTCTTTTGTTTTTCGCGAATAATTCCCATTGGAGAGAACCCATAGAAACCAGCTCAGAAGCATTTAGTTTTTCCATTTTTTAGGGGACCTTACTCTTACTATTCTTAGACTGCAAAATGTTTGTCCTTCCTTCTGGTTGCCAGGGGATTCTATTACTGATTCATGGAATTGACTCCATTTATAAACAATGAAGATTGAACTTGAGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288563" ref_strand="+" ref_description="SGN-E288563 [cLES-8-O24]">
      <seq>tacatcgtcaatgtatatacggaggtcttcggattgggatgtatgaacctgttaaaaacttatatgttggcaaagatcatgttggggatgtgccattgtctaagaaaatacttgctgcacttacaactggtgcgttgggcattacagttgcaaatcctacagatctagttaaagtacgtcttcaagctgaagggaaattgtcagcaggcgtgccaaggcgttattctggagctctaaatgcttactcaactatagtgaaacatgaaggagttcgagctctgtggactggtcttggacccaatattgggcggaatgccatcatcaatgcagctgaattatcaagttatgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="18976" stop="17049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18676" g_stop="18627" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18626" i_stop="18538" i_length="89">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18537" g_stop="18459" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="129" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18458" i_stop="18217" i_length="242">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18216" g_stop="18083" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="263" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18082" i_stop="17439" i_length="644">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17438" g_stop="17349" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="353" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E288563" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18676" e_stop="18627"/>
          <exon e_start="18537" e_stop="18459"/>
          <exon e_start="18216" e_stop="18083"/>
          <exon e_start="17438" e_stop="17349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCTGTAAGTTATCATTTCTAGCGTAGCTTACAACATCTACATGTTTATTTTGTGGTTTTTGGTCTTTTACGGACTCTTTGCTTGGTGAGCAGGTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTGGTGAGTGCCTTTTAGATGTTTTTTGTTTATCATCAGTTTGCTCAAGAGTAAGATAGTAGAGCTTTTATTTCCATTTTGAAAACATCCCGATAGGAACTAGAAATTCAGTGTTTGATTATCAATAACGGATGTTCTGTTTTTCCTTGTATTGTTCTTTTTGCTGTTTGGTATTTCAAAATGTTTTTAAGTAATTTGGTATTTTAATATATTTTAAAGTAATTTGGTTATTCTTTGTCAAATAGGTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGCCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAGGTAATATGTCTTGTCTAGCTCAATTATTTACCAAAATTATGATAACTAACGGCAGGTAGGGTTGTGAAATTGTGTACACCTACTTTGGATCATGACTTGGAGCTAATTTGCCCCTTGAATTGAAATTCAAAACAACCTAAACAATAATCCGTGTTGCTATTTGAAGTCCCACAATGTCTACCAATAAAGCAGGCATACAATCTGCAAAAGTATTTGCCTTTAGTATGTAACATTTAACAACTATTATGACCCCAGAATTGGAGACATAACATTTCTTAATGATTCCTTTGTTGGCCTATTATTAGATAACTGATTCCTTGTTCAACTTTCTCCTTCTTTATCTAATTTTGGTGTATTTGTTCATCCTTCCCGGAGAAAAGAGTAGTGCTTTTCTTCTCCGTGTAGTTTCTGTTCTCCTGGAAATGTTAGGAAATTATGAAAATTTCCATTTCATTTAAATCAATCTAAACTCCAAGGTCAGCAGCTTACTGGACCACTTGCAAAATAATGAAAATAGAACAGGTTTCACTAGTGAAAATTTGAGTTAACTCACGTTGAGTCAATAGTTCTCCCCACAAAAAAGACTCTTATTTTAACTCTTATCTTAACCTCTTCGCATTTTGTTTTTAACCCCTTGATTTTAGGAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTAGCAAGTTATGATCAA</genome_strand>
        <mrna_strand>TACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCT.........................................................................................GTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTG..................................................................................................................................................................................................................................................GTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGTCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTATCAAGTTATGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="22454" stop="23278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22753" g_stop="22978" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22753" e_stop="22978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTTCTTGCTGAAAATGGCTATAAAAAGAAGTCAATTTTCATTTTTTAAAACACT-AAAAATTTTCCTTCTTTGCATTTATTTTTCTCTCAAATAAAATTAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGTTGTTCTAAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTAGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="22517" stop="23440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22816" g_stop="23143" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22816" e_stop="23143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCCTTCTTTGCATTTATTTTTCTCTCAAATAAAATTAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGTTGTTCTAAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTAGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATTTTAT-GTATTTTTTGCTTCTTCTTATTTCTGTTTCTATTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAAGAT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212406" ref_strand="+" ref_description="SGN-E212406 [cLEC-74-H9]">
      <seq>gatatgaatcagattaaggagatgaatgtagaagttggcaggaacgaggtgattcgtctacttgctcgttcatttatttcaaagactcccttgtctgatgtgtttctgcccaagcaaaaacaaagaagggcacaagtagacattgtaacaatgtccgagtctggaaatttgtcgtccatttctgaaaatggaacgagtaatagcaccaagaagttggagctgaagctaacagtaaggaagtctacaaagaaggtcttgtgtgcagaagcagacaatgattttattgattttctcttcaacttcttgacgattcctataggatcaattgaagatgttctaaaagggagttctggcttgagatgtatcgataacttctataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="25237" stop="26368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25537" g_stop="25584" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25585" i_stop="25735" i_length="151">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25736" g_stop="26068" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="381" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E212406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25537" e_stop="25584"/>
          <exon e_start="25736" e_stop="26068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAGGTATTGTCCTTTACCATCCGATTAATTAAAAGAATTAGTGATTACTACATTCTTAATAAAAAAAATTATGCTTTCTGATGATATGTTTTGCTGTGATTTTCGTAAATTGGCATTTGCAGCTAGTAACATGATCTTTTTCTGGACCATTTAGGTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAA</genome_strand>
        <mrna_strand>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAG.......................................................................................................................................................GTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269608" ref_strand="+" ref_description="SGN-E269608 [cLEM-2-H21]">
      <seq>tgattcgtctacttgctcgttcatttatttcaaagactcccttgtctgatgtgtttctgcccaagcaaaaacaaagaagggcacaagtagacattgtaacaatgtccgagtctggaaatttgtcgtccatttctgaaaatggaacgagtaatagcaccaagaagttggagctgaagctaacagtaaggaagtctacaaagaaggtcttgtgtgcagaagcagacaatgattttattgattttctcttcaacttcttgacgattcctataggatcaattgaagatgttctaaaagggagttctggcttgagatgtatcgataacttctataaaagtgtggaggctttagattcgaaatggttcaatatgcctccaaagcagaatagttaccatagtgaggatacatctaatgacaactttaagacagtattactcaagcccaatgttgccacacattataattctgagtatcagctgctacagatttcagaaggaaaatcagaattttacaatttgtatgatccaaggcaacatataaggggtagtcatgttcccaaatttcgtaagttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="25437" stop="26607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25737" g_stop="26307" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E269608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25737" e_stop="26307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</genome_strand>
        <mrna_strand>TGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344378" ref_strand="+" ref_description="SGN-E344378 [cTOF-16-L22]">
      <seq>cccacacccacagcaaatggcgtgtgagaagataatctcctacatatcttacagtatatgactatgtactttcttcttcattaaggcacaaattggtttatatatcatgtggatagagggattatgttaaaatctactatttgaactgtgatctgagtcttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38182" stop="41500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38482" g_stop="38681" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="422" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="489" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41200" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="689" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E344378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38482" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCG</genome_strand>
        <mrna_strand>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302370" ref_strand="+" ref_description="SGN-E302370 [cLEW-27-K20]">
      <seq>tgagaagataatctcctacatatcttacagggtatgactatgtactttcttcttcattaaggcacaaattggtttatatatcatgtggatagagggattatgttaaaatctactatttgaactgtgatctgagtcttaaatttgttggggagcaatggagcaaccactgttgatagggaaagtatctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctttacatgcccccttgatcagctcaactaaatcccaatcccagccacagttttatgaacaagggattgtatatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38206" stop="40999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38506" g_stop="38681" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="398" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="465" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E302370" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38506" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG</genome_strand>
        <mrna_strand>TGAGAAGATAATCTCCTACATATCTTACAGGGTATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAACCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTATCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTTTACATGCCCCCTTGATCAGCTCAACTAAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTATATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544815" ref_strand="+" ref_description="SGN-E544815 [TUS-67-F12]">
      <seq>catgtggatagagggattatgttaaaatctactatttgaactgtgatctgagtcttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggatatgcaagtgggactactggtgatcaaccgaagcaagtgctagacgaggtagaagtacaagagttgcttatagatcatgttggccatcgctgctgttgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38287" stop="41370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38587" g_stop="38681" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="317" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="384" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41070" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="454" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E544815" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38587" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGA</genome_strand>
        <mrna_strand>CATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGATATGCAAGTGGGACTACTGGTGATCAACCGAA.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACAAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207568" ref_strand="+" ref_description="SGN-E207568 [cLEC-32-E21]">
      <seq>tgagtcttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38335" stop="41418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38635" g_stop="38681" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="269" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="336" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41118" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="454" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E207568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38635" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAAT</genome_strand>
        <mrna_strand>TGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206642" ref_strand="+" ref_description="SGN-E206642 [cLEC-31-P3]">
      <seq>ttaaatttgttggggagcaatggagcacccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttgcttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacagagatgcaagtgggactactggtgatcaacggaggcaagtgctatgacgaggtagaagtacaagagttgcttatagatcatgttggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38341" stop="41355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38641" g_stop="38681" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="263" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="330" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41055" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="386" r_length="56" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E206642" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38641" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTA-GACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCAT</genome_strand>
        <mrna_strand>TTAAATTTGTTGGGGAGCAATGGAGCACCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTGCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACAGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTATGACGAGGTAGAAGTACAAGAGTTGCTTATAGATCATGTTGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237823" ref_strand="+" ref_description="SGN-E237823 [cLED-18-B15]">
      <seq>ttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttcttttcatgcccccttgatcagctttcctcaatcccaatcccagccacagttttatgaacaagggattggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38341" stop="40097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38641" g_stop="38681" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="263" r_length="222" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E237823" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38641" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG</genome_strand>
        <mrna_strand>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTTTTCATGCCCCCTTGATCAGCTTTCCTCAATCCCAATCCCAGCCACAGTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746415" ref_strand="+" ref_description="SGN-E746415 [GI|47105547]">
      <seq>gggggagcaatggagcagccactgttgatagcagggaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcatcgaaggaaaggacaagggacctgaaacaggaatatgggagctagatttaaggtctgagtttcctgttttatttgtaccttacaaggaatcaaggctgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggtggtggttctcttttgacacagaaagtagctgttgttagatggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactatccttctaggttttgttggggcctttgcccttgcctggaatggttgaagttataattcaagaactggatttgttgttgtcatcattggtttgagtttgtcccaagtgttcaaggggacaaaatgttggtttttgtgtagaataatatgctttatgatttgcactgttcccaaataaaaagaaaaaaaaaagttgtcttcctaacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38352" stop="43519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38651" g_stop="38681" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39572" i_length="891">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.361" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39573" g_stop="39797" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="255" r_length="224" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="322" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41332" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="654" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41491" g_stop="41632" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="796" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41839" g_stop="41964" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="922" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42681" g_stop="43235" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1477" r_length="555" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E746415" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1478</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38651" e_stop="38681"/>
          <exon e_start="39573" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41332"/>
          <exon e_start="41491" e_stop="41632"/>
          <exon e_start="41839" e_stop="41964"/>
          <exon e_start="42681" e_stop="43235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAAAAAAAAGTTGTCTTCCTATCAATAATTGTCATGATAGGAAA</genome_strand>
        <mrna_strand>GGGGGAGCAATGGAGCAGCCACTGTTGATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGG-AAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAAAAAAAAGTTGTCTTCCTAACAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364852" ref_strand="+" ref_description="SGN-E364852 [cLPT-4-B21]">
      <seq>gcaatggagcagccactgttgatagggaacgtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttggctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttatagagaaggagctgtactccggtggcagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38357" stop="41500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38657" g_stop="38681" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="247" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="314" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41200" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="514" r_length="200" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364852" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38657" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCG</genome_strand>
        <mrna_strand>GCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTGGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTATAGAGAAGGAGCTGTACTCCGGTGGCAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208089" ref_strand="+" ref_description="SGN-E208089 [cLEC-34-N15]">
      <seq>gcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtggggactctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="38357" stop="41439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38657" g_stop="38681" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="247" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="314" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41139" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="453" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E208089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38657" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAA</genome_strand>
        <mrna_strand>GCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGGACTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359036" ref_strand="+" ref_description="SGN-E359036 [cLHT-11-K1]">
      <seq>gagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgtaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcattgaaggaaaggacaagggacctgaaacaggaatatgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="39274" stop="41539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="241" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="308" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41001" g_stop="41239" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="547" r_length="239" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E359036" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGC</genome_strand>
        <mrna_strand>GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGTAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATTGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347973" ref_strand="+" ref_description="SGN-E347973 [cTOF-31-H12]">
      <seq>tggggttcttacgagtatgtgggaagggcctggctctgtgattcccacgacttccttagctggatcagaaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatccaangtgggtggttctcttttgacacagaaagtagcntgttgttagatggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaaggagnttcagttgtgcaataaccaacttaccagtgcacgccagcctactttgctgattcgtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="39317" stop="43125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39617" g_stop="39797" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40625" g_stop="40656" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="215" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40657" i_stop="41524" i_length="868">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41525" g_stop="41632" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="323" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41839" g_stop="41964" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="450" r_length="127" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716">
            <donor d_prob="0.937" d_score="0.90"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42681" g_stop="42825" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="594" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E347973" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39617" e_stop="39797"/>
          <exon e_start="40625" e_stop="40656"/>
          <exon e_start="41525" e_stop="41632"/>
          <exon e_start="41839" e_stop="41964"/>
          <exon e_start="42681" e_stop="42825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTCTTATGAGTATGTGGGAAGGG-CTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAG-AAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGT-GGTGGTTCTCTTTTGACACAGAAAGTAGC-TGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTC</genome_strand>
        <mrna_strand>TGGGGTTCTTACGAGTATGTGGGAAGGGCCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACAT-CCAANGTGGGTGGTTCTCTTTTGACACAGAAAGTAGCNTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGAGNTTCAGTTGTGCAATAACCAA-CTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207728" ref_strand="+" ref_description="SGN-E207728 [cLEC-32-M13]">
      <seq>tttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcatcgaaggaaaggacaagggacctgaaacaggaatatgggagctagatttaaggtctgagtttcctgttttatttgtaccttacaaggaatcaaggctgagaattcctcattcagaaactattgagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="40324" stop="41626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="73" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41001" g_stop="41326" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="399" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E207728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAAT</genome_strand>
        <mrna_strand>AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356335" ref_strand="+" ref_description="SGN-E356335 [cTOS-20-I4]">
      <seq>tgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaaggcttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="40994" stop="43281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41294" g_stop="41332" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41491" g_stop="41632" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="181" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41839" g_stop="41921" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="264" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41922" i_stop="42680" i_length="759">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42681" g_stop="42981" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="565" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E356335" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41294" e_stop="41332"/>
          <exon e_start="41491" e_stop="41632"/>
          <exon e_start="41839" e_stop="41921"/>
          <exon e_start="42681" e_stop="42981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</genome_strand>
        <mrna_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAAGGCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349280" ref_strand="+" ref_description="SGN-E349280 [cTOS-2-H12]">
      <seq>tgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaagatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="40994" stop="43257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41294" g_stop="41332" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41491" g_stop="41632" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="181" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41839" g_stop="41921" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="264" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41922" i_stop="42680" i_length="759">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42681" g_stop="42957" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="541" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E349280" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41294" e_stop="41332"/>
          <exon e_start="41491" e_stop="41632"/>
          <exon e_start="41839" e_stop="41921"/>
          <exon e_start="42681" e_stop="42957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCC</genome_strand>
        <mrna_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAAGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273027" ref_strand="+" ref_description="SGN-E273027 [cLEM-25-P11]">
      <seq>tttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtaccgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggtggtggttctcttttgacacagaaagtagctgttgttagatggaggacgccttcaaccaggaaagttaatgctacaagcggagcaacttctgttccagacgacctgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="41215" stop="43311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41515" g_stop="41632" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41839" g_stop="41964" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="245" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42681" g_stop="43011" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="576" r_length="331" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E273027" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41515" e_stop="41632"/>
          <exon e_start="41839" e_stop="41964"/>
          <exon e_start="42681" e_stop="43011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTA-CGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTAT</genome_strand>
        <mrna_strand>TTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACCGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCCTTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAACTTCTGTTCCAGACGACCTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544814" ref_strand="+" ref_description="SGN-E544814 [TUS-67-F12](-)">
      <seq>gttttatttggacacagaaattagctgttgttagatggaggacgcattcaaccaggaaagttaatgttacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttggtgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactatccttctaggttttgttggggcctttgcccttgcctggaatggttgaagttataattcaagaactggatttgttgttgtcatcattggtttgagtttgtcccaagtgttcaaggggacacaaatgttggtttttgtgtagaataatatgctttatgatttgcactgttcccaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="41628" stop="43495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41928" g_stop="41964" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42681" g_stop="43194" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="552" r_length="515" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E544814" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41928" e_stop="41964"/>
          <exon e_start="42681" e_stop="43194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACA-AAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAA</genome_strand>
        <mrna_strand>GTTTTATTTGGACACAGAAATTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGTTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGGTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACACAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291211" ref_strand="+" ref_description="SGN-E291211 [cLET-2-A20]">
      <seq>ggttacctgaacttcaatctcatttttgagttgaatttttatctcattagttatgattcgattctccacctttgtaatcctctttccaattaccctttgtagctaccctgttttattttatttttaaaaagttaatataatgtcataattgtttttcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="43037" stop="43797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43337" g_stop="43505" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E291211" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43337" e_stop="43505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAGTGCAAGT</genome_strand>
        <mrna_strand>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214796" ref_strand="+" ref_description="SGN-E214796 [cLEC-79-F15]">
      <seq>tttctttctttgtgtttttagtctaaaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttgccatccaaaagcttaaacgtaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45039" stop="46287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45339" g_stop="45987" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E214796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45339" e_stop="45987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACAC</genome_strand>
        <mrna_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTGCCATCCAAAAGCTTAAACGTAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211750" ref_strand="+" ref_description="SGN-E211750 [cLEC-66-A10]">
      <seq>tttctttctttgtgtttttagtctaaaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45039" stop="46093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45339" g_stop="45793" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E211750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45339" e_stop="45793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAA</genome_strand>
        <mrna_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214709" ref_strand="+" ref_description="SGN-E214709 [cLEC-79-N23]">
      <seq>tttctttgtgtttttagtctaaaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45043" stop="46287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45343" g_stop="45987" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E214709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45343" e_stop="45987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACAC</genome_strand>
        <mrna_strand>TTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205572" ref_strand="+" ref_description="SGN-E205572 [cLEC-21-C6]">
      <seq>aaagttatttcttttcttctctctcttattaaagaaggaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatttccccaaaactcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45064" stop="46069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45364" g_stop="45769" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E205572" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45364" e_stop="45769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAA--T---C---A-TCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACA</genome_strand>
        <mrna_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAGGAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATTTCCCCAAAACTCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205863" ref_strand="+" ref_description="SGN-E205863 [cLEC-20-H11]">
      <seq>aaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaaatttnnnccnnatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45064" stop="46068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45364" g_stop="45768" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E205863" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45364" e_stop="45768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTC-AA--T----C--ATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGAC</genome_strand>
        <mrna_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAAATTTNNNCCNNATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206687" ref_strand="+" ref_description="SGN-E206687 [cLEC-31-G17]">
      <seq>aaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcattaccaccgcctactctttcctcttcgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataaccagctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45064" stop="46037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45364" g_stop="45737" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E206687" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45364" e_stop="45737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAA</genome_strand>
        <mrna_strand>AAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATTACCACCGCCTACTCTTTCCTCTTCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACCAGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207225" ref_strand="+" ref_description="SGN-E207225 [cLEC-30-B4]">
      <seq>tatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttttcctttttttttttttaagatcctaatgacttatgtgaacaacatcctgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45069" stop="46206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45369" g_stop="45865" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E207225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45369" e_stop="45865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTT</genome_strand>
        <mrna_strand>TATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208192" ref_strand="+" ref_description="SGN-E208192 [cLEC-37-O23]">
      <seq>cttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45074" stop="45840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45374" g_stop="45540" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E208192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45374" e_stop="45540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTC</genome_strand>
        <mrna_strand>CTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200934" ref_strand="+" ref_description="SGN-E200934 [cLEC-5-J14]">
      <seq>accagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtnatcttgatgaaatctaaccagacttgataatttaaaatcattagttttcgaatatcgaaaatcatcattaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45217" stop="45963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45517" g_stop="45710" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E200934" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="1.066" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45517" e_stop="45710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCC</genome_strand>
        <mrna_strand>ACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGT-NATCTTGATGA-AATCTAACCAGACTTGAT-AA-TTT-AAAATCATT-AGT-TTTCGAATATC---GAAAAT-CATCATT-AATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211022" ref_strand="+" ref_description="SGN-E211022 [cLEC-69-E23]">
      <seq>tatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttggtaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45230" stop="46563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45530" g_stop="46263" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E211022" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45530" e_stop="46263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGAT</genome_strand>
        <mrna_strand>TATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGGTAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278706" ref_strand="+" ref_description="SGN-E278706 [cLER-2-C13]">
      <seq>caactcggtttcatcaccaccggctactcttccctatccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacaacattaaatcccctcttatggtccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45235" stop="46102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45535" g_stop="45802" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E278706" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45535" e_stop="45802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCA</genome_strand>
        <mrna_strand>CAACTCGGTTTCATCACCACCGGCTACTCTTCCCTATCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACAACATTAAATCCCCTCTTATGGTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241586" ref_strand="+" ref_description="SGN-E241586 [cLED-36-G1]">
      <seq>gcctactctttcctctccgtgcccaaaatagcgacttaactacaggcaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45256" stop="46386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45556" g_stop="46086" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E241586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45556" e_stop="46086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTG</genome_strand>
        <mrna_strand>GCCTACTCTTTCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGGCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207936" ref_strand="+" ref_description="SGN-E207936 [cLEC-34-F9]">
      <seq>aaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45392" stop="46582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45692" g_stop="46282" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E207936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45692" e_stop="46282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATAC</genome_strand>
        <mrna_strand>AAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284432" ref_strand="+" ref_description="SGN-E284432 [cLER-16-J13]">
      <seq>ttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactgtgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagcggtaaagacaattggaaaggactaccatttatgtatgactaagttagaattggacaagaagagtcacgaattaaaagagtcaacatttttatcaacatctttgttaaagaaggttgtagaatggttgaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45568" stop="46530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45868" g_stop="46230" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E284432" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45868" e_stop="46230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGA</genome_strand>
        <mrna_strand>TTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTGTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGCGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACTAAGTTAGAATTGGACAAGAAGAGTCACGAATTAAAAGAGTCAACATTTTTATCAACATCTTTGTTAAAGAAGGTTGTAGAATGGTTGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279840" ref_strand="+" ref_description="SGN-E279840 [cLER-8-J5]">
      <seq>tcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatactattggaagaatgttacaaagacttgggacacaaacaactcctataaacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45654" stop="46635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45954" g_stop="46335" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E279840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45954" e_stop="46335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAA</genome_strand>
        <mrna_strand>TCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233168" ref_strand="+" ref_description="SGN-E233168 [cLED-6-O24]">
      <seq>cggagttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaaaacttggccaaataattcccttttcaaactatccaatgctggatttagtttctttaacccccccattgaattattgttttacataaacaaaccacaatgcaaatcaaaactttcactagttgttttctccatcaaattcaacaaactttcatatccttttgggtttataggagttgtttgggccccaagtctttggaacattcttccaatagtatgtgtaataaattgggatccagcagcatacttggcatgttcactacaactcattttaaccattctacaacctttttttacaaaaatggtgataaaattggtgactcttttaattcttgacttttcttggccaattctaactttggcatacataaatggggggcctttccaattggctttaccacttgttggaccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="135401" stop="45782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47357" g_stop="47315" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.674"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47314" i_stop="46515" i_length="800">
            <donor d_prob="0.000" d_score="0.67"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46082" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="476" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E233168" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47357" e_stop="47315"/>
          <exon e_start="46514" e_stop="46082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTTATTTTGTATAAATTGATTCATTCAATTTTTTTTTTGGTAGAAAAGTATATTGCTTATATATGGTTAAAATAATTTTATATGTATATAATAGATGTTGTACTCTCTTCGACTATTTCATGTGTCTATTCTTACAATTTTTAAATTATCTTATTGAAAATTTTAGTTCCACCCCTATGACCAAGTTTGGTAAATACTATATTATTTCACTTCAATTCACTTTTCTCTTCTTTTATTTCATGATTGGTATGACAAATAAATATTATTCATAGAAATTATTTTCTTAGTCACTTATTTTCTACTGTATGATAAAAGAAGTGAGAAAATATTATTTCAATAACATTTATATTATCTAGCAAACTATTATAGAGATATAGTGAGATGTACAGTAGAGGCTCAATTATAATTTTGATCTAAAATAAATTTTAGATGTTTATATATTGCTATAAATTATTTCATAAATGGTAAAAAATTTTAGTTATTAATAATTATAAAAAGATAAAATTTATTTGCAGAACAAACTAAAAAAGAAAACGTGTCTTTCGAACAGAAAGAACAATATATCAACTCTTATTATACAAAATTACAAATCTTTGTTGTTTTATTAGAAAAAGATAAAAATTATTACACAAATCAACCACTCTACTTGTTCAGGACAAATGAGATCTTCGGCCTGCATGCCTGGAAGCAGCTCAAACAAAGAAGAGTCTGGTCCGATCTGAATTCAGGCACGGCTAGTATCAAGAAAGTGCCTCTAGTTCCTTCCTCTCAACTTTCAATTTTTCAATTTTCTTACTAAAATCAGGAGTAGGTAAAGCTAACCTACTTCCCTTTTCCACTCTTTTCTCCAACTTTTGAAGAACTTGTCCAAATAATTCCCTTTTCAAACTATCCAATGCTGCATCTAGTTTCTCTAACACCTCCATTGAATTATTGTTATACATAAACAAACCACAATACAAATCAAAACTATCACTAGTTGTATTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGTGTTTATAGGAGTTGTTTGTGTCCCAAGTCTTTGTAACATTCTTCCAATAGTATGTGTAATAAATTGTGATCCAGCAGCATACTTGTCATGTTCACTACAACTCATTTCAACCATTCTACAACCTTCTTTTACAAAAATGTTGATAAAATTGTTGACTCTTTTAATTCTTGACTCTTCTTGTCCAATTCTAACTTTGTCATACATAAATGGTAGTCCTTTCCAATTGTCTTTACCACTTGTTGGACCAAAC</genome_strand>
        <mrna_strand>CGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTAAAAACTTGGCCAAATAATTCCCTTTTCAAACTATCCAATGCTGGATTTAGTTTCTTTAACCCCCCCATTGAATTATTGTTTTACATAAACAAACCACAATGCAAATCAAAACTTTCACTAGTTGTTTTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGGGTTTATAGGAGTTGTTTGGGCCCCAAGTCTTTGGAACATTCTTCCAATAGTATGTGTAATAAATTGGGATCCAGCAGCATACTTGGCATGTTCACTACAACTCATTTTAACCATTCTACAACCTTTTTTTACAAAAATGGTGATAAAATTGGTGACTCTTTTAATTCTTGACTTTTCTTGGCCAATTCTAACTTTGGCATACATAAATGGGGGGCCTTTCCAATTGGCTTTACCACTTGTTGGACCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389540" ref_strand="+" ref_description="SGN-E389540 [TUS-4-F1](-)">
      <seq>gtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatactattggaagaatgttacaaagacttgggacacaaacaactcctataaacacaaaaggatatgaaagtttgttgaattggaaagagaatacaactagtgatagttttgatttgtattgtggtttgtttatgtataacaagaattcaatggaggtgttagagaaactagagacagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45782" stop="46758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46082" g_stop="46459" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E389540" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46082" e_stop="46459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATT</genome_strand>
        <mrna_strand>GTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTGGAAAGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAAGAATTCAATGGAGGTGTTAGAGAAACTAGAGACAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377910" ref_strand="-" ref_description="SGN-E377910 [TUS-20-J4](-)">
      <seq>aagtggtaaagacaattttttttgactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatactattggaagaatgttacaaagacttgggacacaaacaactcctataaacacaaaaggatatgaaagtttgttgaatttgatggagaatacaactagtgatagttttgatttgtattgtggtttgtttatgtataacaataattcaatggaggtgttagagaaactagatgcagcattggatagtttgaaaagggaattatttggacaagttcttaaaaaaaaaaaaaaaaaaaaaaataaaataacaacactaaaaaaaaaaaagtctttttccaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45817" stop="135416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46094" g_stop="46514" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46515" i_stop="47426" i_length="912">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47427" g_stop="47465" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="459" r_length="38" r_score="0.590"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47466" i_stop="47615" i_length="150">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47616" g_stop="47626" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="470" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E377910" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377910" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46094" e_stop="46514"/>
          <exon e_start="47427" e_stop="47465"/>
          <exon e_start="47616" e_stop="47626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAGGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAGAGGCACTTTCTTGATACTAGCCGTGCCTGAATTCAGATCGGACCAGACTCTTCTTTGTTTGAGCTGCTTCCAGGCATGCAGGCCGAAGATCTCATTTGTCCTGAACAAGTAGAGTGGTTGATTTGTGTAATAATTTTTATCTTTTTCTAATAAAACAACAAAGATTTGTAATTTTGTATAATAAGAGTTGATATATTGTTCTTTCTGTTCGAAAGACACGTTTTCTTTTTTAGTTTGTTCTGCAAATAAATTTTATCTTTTTATAATTATTAATAACTAAAATTTTTTACCATTTATGAAATAATTTATAGCAATATATAAACATCTAAAATTTATTTTAGATCAAAATTATAATTGAGCCTCTACTGTACATCTCACTATATCTCTATAATAGTTTGCTAGATAATATAAATGTTATTGAAATAATATTTTCTCACTTCTTTTATCATACAGTAGAAAATAAGTGACTAAGAAAATAATTTCTATGAATAATATTTATTTGTCATACCAATCATGAAATAAAAGAAGAGAAAAGTGAATTGAAGTGAAATAATATAGTATTTACCAAACTTGGTCATAGGGGTGGAACTAAAATTTTCAATAAGATAATTTAAAAATTGTAAGAATAGACACATGAAATAGTCGAAGAGAGTACAACATCTATTATATACATATAAAATTATTTTAACCATATATAAGCAATATACTTTTCTACCAAAAAAAAAATTGAATGAATCAATTTATACAAAATAACTCCGTCCCTACTGTATCACGTTATGTTTCTTAAATATGAAATATAATATTCATAAAATTTTGGAACTTGCTAGGAATATGACACGACAGCCACTTGTGAATAAAAATAATTTAGCAACCTTGGAATTTGACATAACATCGTGCTAATAAGGTTTTCTCTATTTTAATTTGTTTATTTAATTTTAATTTAATATAAAAAAAATAAAGTAAATATTTAGAGTTGTAATTTTTTAATTTTTTTTGTCTTTTTGCTATGCATAAAGTTCCAAAGCAA</genome_strand>
        <mrna_strand>AAGTGGTAAAGACAATTTTTTTTGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATAAAATAACA-ACACTAAAAAAAAAAAAGTCTTT......................................................................................................................................................TTCCAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285494" ref_strand="+" ref_description="SGN-E285494 [cLES-10-C23]">
      <seq>aagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatactattggaagaatgttacaaagacttgggacacaaacaactcctataaacacaaaaggatatgaaagtttgttgaatttgatggagaatacaactagtgatagttttgatttgtattgtggtttgcttatgtataacaataattcaatggaggtgttagagaaactagatgcagcattggatagtttgaaaagggaattatttggacaagttcttcaaaagttggagaaaagagtggaaaagggaagtaagttagctttacctactcctgattttagtaagaaaattgaaaaattgaaagttgagaggaaggaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="45863" stop="46899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46163" g_stop="46599" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E285494" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46163" e_stop="46599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAGGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</genome_strand>
        <mrna_strand>AAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGCTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAAGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="49061" stop="49957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49361" g_stop="49683" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49361" e_stop="49683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGTATAATTATATGTGTATAGCAAGAAGACATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAATCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAGTTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTACATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTATGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="55402" stop="54502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55102" g_stop="54802" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55102" e_stop="54802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCCCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGTTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTTAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="55829" stop="54743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55529" g_stop="55043" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55529" e_stop="55043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCATAACATCTCCAGCCTGATCCGTTTTGGATCCTTCCCGGCCACCCCCAAATCACCACCGCCCGTGCCACTCCCCAATACTCATCTCATGTTAACCCATGGCAAAGCCGATATCTTTAAACCCAAAAACCTTTCAGGCTACCATACTACCAAATACACCCCCTTTCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTGTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGAATGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCTAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCC-AAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233486" ref_strand="+" ref_description="SGN-E233486 [cLED-9-C19]">
      <seq>gagtttggaaagaagttggttgatagacttagagatattggtgaaccatttatcgctctccatttaagatacgagaaagacatgctagcgtttactggctgcagcaacaatttgactattgaagaggctgaagaacttcgtacgatgaggtatgaagtgaaacattggaaggagaaagagatagacagcaaggaaaagcgactccagggaggctgccccatgtcccctagggaggctgctttatttctcaaagcgatgggatatctgtccacgaccagaatatacattgttgcaggggaaatttatggcaacaacagcatggatgaattccgttctcattacccgaatgtgtactctcactcaacccttgcaacaaatgaagaacttgaggctttcaagaattatcaaaaccgtcttgctgcagtagactacatggtagcccttgaaagcgatgtttttgcttacacttacgatggcaatatggcgaaggccgtgcaaggtcatagacgatttgaaggatttcggaagaccattaacccggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="65802" stop="67033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66102" g_stop="66169" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66170" i_stop="66257" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66258" g_stop="66733" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="544" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E233486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66102" e_stop="66169"/>
          <exon e_start="66258" e_stop="66733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAGGTAATCTATCTAAACACTTTTGTGTTTCTTCTTCTATTCTTTAACCAATTGATCTATGAGTAACTTGGTATATTGCTCAATTGTACAGATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</genome_strand>
        <mrna_strand>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAG........................................................................................ATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374975" ref_strand="+" ref_description="SGN-E374975 [TUS-36-A17]">
      <seq>ttttcatcacttgaatcaaaaccaacaataatactgatacattttcttcattttttcaggttcaactttgtaagattgatcgactcgttagataaaggtgaaatctcttgggaagagtttgcttcaaaagttaaggccttacaatccaacagattaggagcaccttacctaagacaagccggtgaatcaccacgattagaggagaacttttacgcaaatcctttaccaggttgcttgtgtaatcgatcacacgaagaagccagtaaacaactcaacaagagaccaagactgagggttgcttcacaaagataggtactttcaatgatcataatgtggtagattagttcaatatcaatatacatgttctacaaatggcctataaggggttgccagaagtcgggtttttcatcgcccttcacactgcgcagcgagcagaaagaaagagagattgttgtaagaagcaaagcagtacttggaagcagagatatgatggtttataagatggacaaaagaaagcatatacacaaaccagagagatgtactcaaaaatcattctttagggtggaatataaaaattcatttattttttttattttttttttctgagttagttttatgatttaggttcaacaaggattgatcatatatgtattaccaattcatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="66472" stop="67740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66772" g_stop="67440" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E374975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66772" e_stop="67440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</genome_strand>
        <mrna_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228095" ref_strand="+" ref_description="SGN-E228095 [cLED-2-J23]">
      <seq>ttttcatcacttgaatcaaaaccaacaataatactgatacattttcttcattttttcaggttcaactttgtaagattgatcgactcgttagataaaggtgaaatctcttgggaagagtttgcttcaaaagttaaggccttacaatccaacagattaggagcaccttacctaagacaagccggtgaatcaccacgattagaggagaacttttacgcaaatcctttaccaggttgcttgtgtaatcgatcacacgaagaagccagtaaacaactcaacaagagaccaagactgagggttgcttcacaaagataggtactttcaatgatcataatgtggtagattagttcaatatcaatatacatgttctacaaatggcctataaggggttgccagaagtcgggtttttcatcgcccttcacactgcgcagcgagcagaaagaaagagagattgttgtaagaagcaaagcagtacttggaagcagagatatgatggtttataagatggacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="66472" stop="67583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66772" g_stop="67283" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E228095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66772" e_stop="67283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAG</genome_strand>
        <mrna_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239463" ref_strand="+" ref_description="SGN-E239463 [cLED-23-H11]">
      <seq>ttttcatcacttgaatcaaaacctacaataatactgatacattttcttcattttttcaggttcaactttgtaagattgatcgactcgttagataaaggtgaaatctcttgggaagagtttgcttcaaaagttaaggccttacaatccaacagattaggagcaccttacctaagacaagccggtgaatcaccacgattagaggagaacttttacgcaaatcctttaccaggttgcttgtgtaatcgatcacacgaagaagccagtaaacaactcaacaagagaccaagactgagggttgcttcacaaagataggtactttcaatgatcataatgtggtagattagttcaatatcaatatacatgttctacaaatggcctataaggggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="66472" stop="67460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66772" g_stop="67160" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E239463" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66772" e_stop="67160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTG</genome_strand>
        <mrna_strand>TTTTCATCACTTGAATCAAAACCTACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368667" ref_strand="+" ref_description="SGN-E368667 [TUS-22-J24](-)">
      <seq>taccacgatcaaaatgttctaaagagacagcttcgctttgctattgcagcaggcataatatcccagtggacaataggtgctgttagaggttttcctactgaaagcgccacacagaatctcaaagagcaggtttatgtaccatcgatgtggtagtagtgccataatgccaattctcaggaccttgttttctgcaaaagttactacttaaacgtagatttcgttgtaattaatccgacaaattataggttcttgaggaaagatccatagtgtttttgtaagtgcatgatctttgtaaaccagtcccatttgtaactcaaaatcagttaatttgattgtgcatctcatggttaaaggatgttatatagattcttcactgttgtaatgagtaggcagttttcacttttcccttttatatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="71717" stop="70701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71417" g_stop="71007" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="426"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E368667" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71417" e_stop="71007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACGATCAAGATGTTCTAGAGAGACAGCTTCGCTTTGCTATTGCAGCAGGCATAATATCCCAGTGGACAATAGGTGCTGTTAGAGGTTTTCCTACTGAAAGCGCCACACAGAATCTCAAAGAGCAGGTTTATGTACCATCGATGTGGTAGTAGTGCCATAATGCCAATTCTCAGGACCTTGTTTTCTGCAGAAGTTACTACTTAAACGTAGATTTCGTTGTAATTAATCCGACAAATTATAGGTTCTTGAGGAAAGATCCATAGTGTTTTTGTAAGTGCATGATCTTTGTAAACCAGTCCCATTTGTAACTCAAAATCAGTTAATTTGATTGTGCATCTCATGGTTAAAGGATGTTATATAGATTCTTCACTGTTGTAATGAGTAGGCAGTTTTCACTTTTCACTATT</genome_strand>
        <mrna_strand>TACCACGATCAAAATGTTCTAAAGAGACAGCTTCGCTTTGCTATTGCAGCAGGCATAATATCCCAGTGGACAATAGGTGCTGTTAGAGGTTTTCCTACTGAAAGCGCCACACAGAATCTCAAAGAGCAGGTTTATGTACCATCGATGTGGTAGTAGTGCCATAATGCCAATTCTCAGGACCTTGTTTTCTGCAAAAGTTACTACTTAAACGTAGATTTCGTTGTAATTAATCCGACAAATTATAGGTTCTTGAGGAAAGATCCATAGTGTTTTTGTAAGTGCATGATCTTTGTAAACCAGTCCCATTTGTAACTCAAAATCAGTTAATTTGATTGTGCATCTCATGGTTAAAGGATGTTATATAGATTCTTCACTGTTGTAATGAGTAGGCAGTTTTCACTTTTCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368668" ref_strand="+" ref_description="SGN-E368668 [TUS-22-J24]">
      <seq>ccgaattgaatcttgatgttctgaaagaggctaggatgttccactttaattctgaagtcttgacatcttcatctatgcgttcaactctttttaaagcaattacattgtcaaagaagtttggtggtcttgtattttttgacttaaatctgccattgcctctgtggagatcacgtgacgaaacaagggatttgatcaaggaagcctggcagcaagctaacatcattgaggtttcgaggcaagagcttgaatttcttcttgacgaagagcattacgagaggaaaaggaattatagacctcaatactttgcggagaattacgaacaaaccaaacaaagaagaaattattatcactatactcctgaggaaattgctcccttgtggcacgacggactgaaacttctgtttgttacagatgggacacttaggattcattactattccccttcttttgatggggtggttgttggtacagaagatgtgctcataacaccgtttacttgggataaaactggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="73389" stop="71171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73089" g_stop="73061" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73060" i_stop="71958" i_length="1103">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71957" g_stop="71471" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="516" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E368668" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73089" e_stop="73061"/>
          <exon e_start="71957" e_stop="71471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATTGAATCTTGATGTTCTGAAAGAGGTATGTGGAAGTGTTGTTATTAAAAGTAAAGATATATTTTTATTTATGGATAGATTAAGCATGTTGTTGTTTCTATTTGTGTAGTGATGTTTGGCTTTAAATGTTAATAGAGGATGCATGAATCTAATTTGCTATGTGATTGGTATTAAACTATGTTGCGCAAAATGGCTTATGAAAGAACCCCATGGCTGCTTTTCTTAAGATATCGTCTGACCCGCTGGGGTCGTTGCTCTTATCTTGTTCTCCCGTTGTGAAACCAGTTCATTTCGTAGTTGTTAGTTTTGGAATTCCGCTGATTCCAAGTACTCTACTTTATACCTACTATTTCGTCTTGTTTTTGGTTTCTAGTCTTATTTTACCATCTCCATCATCGCACATAGGAATGTAGAGAGTAACACTAATATTCCCCATAAATGCTTATTAGTAGGTATATTGAAGTCAGACTGCTGGAGAAGCTCACTATTTATCAGTAGACACTATTGTGCTGTCGTTAACAGTTTTATTGCTCTCTCCAGCTCTGAAGTTTGCTTGATCTCTTCACTCTGATGACATTTCTTTGCAATGACACATTTGTTTCGTAAAACCAATTGACGAAAGATGCATAGTTCTCGTCAATTTATTTATTTGAGTTTGACTTGTGCTAATCGTATATACTCCTTTTAGTTGCGAGGTAGTGGAAGTGTAGTTACCTATCATTAAAAAAATCTAGTGTCCTGACAACTAGTTATCATTTGGAGCAGCAAATTGCTTTGTCGTTTCATGCTTGACTAGTTACTCATCTTCCTGAAACTGTCGGTCTTTTAGCTTGAGACTGGTTGATCCTTAAACCGTGAAAGCTGAAAAATGATTCAATATATCATCAGTTCTCATTCTCTTGTTTGGTAGGGAAATTGTTTTTTTCGATTGGTATGAACCAGAAGTAAGATGTTAAATTCATGATGGATATTTTTCATACAGTGCTTGAACCTCCACTATGGAGAAGAATATATCTTCTATCAGTTTTATCCTTTCCGGAATTTACTTGCTTCAATAATTGTGTCAGGGTGATGATGGGAAACTATTATTAACAAATTTCGTGGATGCTTTTGCTTTCTGTTTTGCAGGCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGTGATAGAACTGGTTCTG</genome_strand>
        <mrna_strand>CCGAATTGAATCTTGATGTTCTGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGGGATAAAACTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237745" ref_strand="+" ref_description="SGN-E237745 [cLED-19-J22]">
      <seq>ccgaattgaatcttgatgttctgaaagaggctaggatgttccactttaattctgaagtcttgacatcttcatctatgcgttcaactctttttaaagcaattacattgtcaaagaagtttggtggtcttgtattttttgacttaaatctgccattgcctctgtggagatcacgtgacgaaacaagggatttgatcaaggaagcctggcagcaagctaacatcattgaggtttcgaggcaagagcttgaatttcttcttgacgaagagcattacgagaggaaaaggaattatagacctcaatactttgcggagaattacgaacaaaccaaacaaagaagaaattattatcactatactcctgaggaaattgctcccttgtggcacgacggactgaaacttctgtttgttacagatgggacacttaggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="73389" stop="71257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73089" g_stop="73061" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73060" i_stop="71958" i_length="1103">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71957" g_stop="71557" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="430" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E237745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73089" e_stop="73061"/>
          <exon e_start="71957" e_stop="71557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATTGAATCTTGATGTTCTGAAAGAGGTATGTGGAAGTGTTGTTATTAAAAGTAAAGATATATTTTTATTTATGGATAGATTAAGCATGTTGTTGTTTCTATTTGTGTAGTGATGTTTGGCTTTAAATGTTAATAGAGGATGCATGAATCTAATTTGCTATGTGATTGGTATTAAACTATGTTGCGCAAAATGGCTTATGAAAGAACCCCATGGCTGCTTTTCTTAAGATATCGTCTGACCCGCTGGGGTCGTTGCTCTTATCTTGTTCTCCCGTTGTGAAACCAGTTCATTTCGTAGTTGTTAGTTTTGGAATTCCGCTGATTCCAAGTACTCTACTTTATACCTACTATTTCGTCTTGTTTTTGGTTTCTAGTCTTATTTTACCATCTCCATCATCGCACATAGGAATGTAGAGAGTAACACTAATATTCCCCATAAATGCTTATTAGTAGGTATATTGAAGTCAGACTGCTGGAGAAGCTCACTATTTATCAGTAGACACTATTGTGCTGTCGTTAACAGTTTTATTGCTCTCTCCAGCTCTGAAGTTTGCTTGATCTCTTCACTCTGATGACATTTCTTTGCAATGACACATTTGTTTCGTAAAACCAATTGACGAAAGATGCATAGTTCTCGTCAATTTATTTATTTGAGTTTGACTTGTGCTAATCGTATATACTCCTTTTAGTTGCGAGGTAGTGGAAGTGTAGTTACCTATCATTAAAAAAATCTAGTGTCCTGACAACTAGTTATCATTTGGAGCAGCAAATTGCTTTGTCGTTTCATGCTTGACTAGTTACTCATCTTCCTGAAACTGTCGGTCTTTTAGCTTGAGACTGGTTGATCCTTAAACCGTGAAAGCTGAAAAATGATTCAATATATCATCAGTTCTCATTCTCTTGTTTGGTAGGGAAATTGTTTTTTTCGATTGGTATGAACCAGAAGTAAGATGTTAAATTCATGATGGATATTTTTCATACAGTGCTTGAACCTCCACTATGGAGAAGAATATATCTTCTATCAGTTTTATCCTTTCCGGAATTTACTTGCTTCAATAATTGTGTCAGGGTGATGATGGGAAACTATTATTAACAAATTTCGTGGATGCTTTTGCTTTCTGTTTTGCAGGCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCA</genome_strand>
        <mrna_strand>CCGAATTGAATCTTGATGTTCTGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316608" ref_strand="+" ref_description="SGN-E316608 [cTOA-25-L22]">
      <seq>atacattttcttcctcaatctcttcctcatcatcattctcacaattcactaaaccccaccattttcttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcatttatggggaaagttgggagtgatgagttaggacaagaaatggttttgttaatgaataaagagaaagtgcaaacaagggctgtcaaatttagtgatagtatgaggactggatgtagttatatggaaattaagtttaaagatgggaaaatgagggtggagaaagttcagactctgctgangatcactgcttagctccgaattgaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="74095" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73795" g_stop="73075" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E316608" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73795" e_stop="73075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTCAAGACTCTGCTGAGGATTCACTGCTTAGCTCCGAATTGAATCTTG</genome_strand>
        <mrna_strand>ATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTC-AGACTCTGCTGANGA-TCACTGCTTAGCTCCGAATTGAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316396" ref_strand="+" ref_description="SGN-E316396 [cTOA-25-F1]">
      <seq>aacaatacattttcttcctcaatctcttcctcatcatcattctcacaattcactaaaccccaccattttcttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcatttatggggaaagttgggagtgatgagttaggacnagaaatggttttgttaatgaataaagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="74099" stop="72920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73799" g_stop="73220" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E316396" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73799" e_stop="73220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAA</genome_strand>
        <mrna_strand>AACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACNAGAAATGGTTTTGTTAATGAATAAAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300743" ref_strand="+" ref_description="SGN-E300743 [cLEW-8-D24]">
      <seq>acatagcaaaaacaccatggcaacaatacattttcttcctcaatctcttcctcatcatcattctcacaattcactaaaccccaccattttcttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcatttatggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="74120" stop="72975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73820" g_stop="73275" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E300743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73820" e_stop="73275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAA</genome_strand>
        <mrna_strand>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317881" ref_strand="+" ref_description="SGN-E317881 [cTOA-30-N10]">
      <seq>cttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcattatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="74030" stop="72978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73730" g_stop="73278" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E317881" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73730" e_stop="73278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGG-AATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGG</genome_strand>
        <mrna_strand>CTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCA-TTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733788" ref_strand="+" ref_description="SGN-E733788 [LB10DG09]">
      <seq>cggttagttctgttaaattggggctaatgaatagtggtgaaaagatgcaatcttggattgattatgaagcaagttcaaagagattagaaatcaggttgagcaaattaggtgacataaagccagttgatacattactttcttgccctattgatatgtcacaaatgtggaaagaggatgaattgtttgtggggttaagttcttcaagtgggaattccactcagaaatgcaatatctattcattgagctttaacacaaggactgcacctcattggatgcactcagaaccattagatccacaagcatttgttgagaaaaaagaagagatgaaagttcatagcagaagtgattgtgctttgaggattcttggtgcattgcttttcggtacgggatgtggagcattaggggcattagttgttgtgattgtgtggactgtgttagggagtagaaggccagtggcaccagaggatcatcctgcagtaatggaacttcataagaaggaattcgacgagtataaaaagttcatagtagttgtagataaagctatggaagatggtaaggttaagaattaggtaaaacttgattgaagtgggaatttagttttgttggttatgtaaaaatcatctttgttaagttttgtgctttttgttcttgttatgttgtgtagctgtaatttaatgatttactattcaaagtgtactaattgctcagtatggtcattaaaatacagcttcagattggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="78333" stop="76989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78035" g_stop="77287" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E733788" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78035" e_stop="77287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATTGTTTGTGGGGTTAAGTTCTTCAAGTGGGAATTCCACTCAGAAATGCAATATCTATTCATTGAGCTTTAACACAAGGACTGCACCTCATTGGATGCACTCAGAACCATTAGATCCACAAGCATTTGTTGAGAAAAAAGAAGAGATGAAAGTTCATAGCAGAAGTGATTGTGCTTTGAGGATTCTTGGTGCATTGCTTTTCGGTACGGGATGTGGAGCATTAGGGGCATTAGTTGTTGTGATTGTGTGGACTGTGTTAGGGAGTAGAAGGCCAGTGGCACCAGAGGATCATCCTGCAGTAATGGAACTTCATAAGAAGGAATTCGACGAGTATAAAAAGTTCATAGTAGTTGTAGATAAAGCTATGGAAGATGGTAAGGTTAAGAATTAGGTAAAACTTGATTGAAGTGGGAATTTAGTTTTGTTGGTTATGTAAAAATCATCTTTGTTAAGTTTTGTGCTTTTTGTTCTTGTTATGTTGTGTAGCTGTAATTTAATGATTTACTATTCAAAGTGTACTAATTGCTCAGTATGGTCATTAAAATACAGCTTCAGATTGGTAGACACAAGT</genome_strand>
        <mrna_strand>CGGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATTGTTTGTGGGGTTAAGTTCTTCAAGTGGGAATTCCACTCAGAAATGCAATATCTATTCATTGAGCTTTAACACAAGGACTGCACCTCATTGGATGCACTCAGAACCATTAGATCCACAAGCATTTGTTGAGAAAAAAGAAGAGATGAAAGTTCATAGCAGAAGTGATTGTGCTTTGAGGATTCTTGGTGCATTGCTTTTCGGTACGGGATGTGGAGCATTAGGGGCATTAGTTGTTGTGATTGTGTGGACTGTGTTAGGGAGTAGAAGGCCAGTGGCACCAGAGGATCATCCTGCAGTAATGGAACTTCATAAGAAGGAATTCGACGAGTATAAAAAGTTCATAGTAGTTGTAGATAAAGCTATGGAAGATGGTAAGGTTAAGAATTAGGTAAAACTTGATTGAAGTGGGAATTTAGTTTTGTTGGTTATGTAAAAATCATCTTTGTTAAGTTTTGTGCTTTTTGTTCTTGTTATGTTGTGTAGCTGTAATTTAATGATTTACTATTCAAAGTGTACTAATTGCTCAGTATGGTCATTAAAATACAGCTTCAGATTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340629" ref_strand="+" ref_description="SGN-E340629 [cTOF-1-I22]">
      <seq>tttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgttaatggtggtatacaaatgagtggttcaatgggttttagtgctggaagaatcttgaacaagaaaccctttaagctaattgatggaaatccaagaaaaatggtgtctttttcattgcattttgtgttttcattgtcaagagaaaatggggatggatttgcttttgtgatggtacctattggatatccttttgatgtgtttgatggtggctcatttgggctattgggtaatagaaaaatgaagtttcttgctgtagaatttgatacatttatggatgagaaatatggtgatgtgaatgataaccatgttggtgttgatttaagcagctttatatctgtgaaagtgagtaatgttagttctgttaaattggggctaatgaatagtggtgaaaagatgcaatcttggattgattatgaagcaagttcaaagagattagaaatcaggttgagcaaattaggtgacataaagccagttgatacattacttttcttgccctattgatatgtcacaaatgtggaaagaggatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="78807" stop="77555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78507" g_stop="77855" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E340629" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78507" e_stop="77855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTAC-TTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATT</genome_strand>
        <mrna_strand>TTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708728" ref_strand="+" ref_description="SGN-E708728 [FA36CD11]">
      <seq>aaagagtaaaatcttattcaattttcacaaccttcaaagccaaatccaccactccccatcaccccccaccccccccatcactcaccaacctctgttacccatttccccaagcaattcccctctactcctttctcaatactcatcacaaaccctagaaattctttgagataaaatacctcaaaatcatataaaaatttaatctttcttgaaattctatacatgggttcatttaagaagaaatcttgataagtcccagttgaaaaaagagtacaaagtttacagctttctatagctaaagttgagccaagatcaagaatgggtactttgccagcttccaggtatcttatggtgttgtttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgttaatggtggtatacaaatgagtggttcaatgggttttagtgctggaagaatcttgaacaagaaaccctttaagctaattgatggaaatccaagaaaaatggtgtctttttcattgcattttgtgttttcattgtcaagagaaaatggggatggatttgcttttgtgatggtacctattggatatccttttgatgtgtttgatggtggctcatttgggctattgggtaatagaaaaatgaagtttcttgctgtagaatttgatacatttatggatgagaaatatggtgatgtgaatgataaccatgttggtgttgatttaagcaactttatatctgtgaaagtgagtaatgttagttctgttaaattggggctaatgaatagtggtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="79161" stop="77694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78861" g_stop="77994" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="868" r_length="868" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E708728" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78861" e_stop="77994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAA</genome_strand>
        <mrna_strand>AAAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGCCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAACTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706527" ref_strand="+" ref_description="SGN-E706527 [FA30AH04]">
      <seq>cggtaaaatcttattcaattttcacaaccttcaaagccaaatccaccactccccatcaccccccaccccccccatcactcaccaacctctgttacccatttccccaagcaattcccctctactcctttctcaatactcatcacaaaccctagaaattctttgagataaaatacctcaaaatcatataaaaatttaatctttcttgaaattctatacatgggttcatttaagaagaaatcttgataagtcccagttgaaaaaagagtacaaagtttacagctttctatagctaaagttgagccaagatcaagaatgggtactttgtcagcttccaggtatcttatggtgttgtttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgttaatggtggtatacaaatgagtggttcaatgggttttagtgctggaagaatcttgaacaagaaaccctttaagctaattgatggaaatccaagaaaaatggtgtctttttcattgcattttgtgttttcattgtcaagagaaaatggggatggatttgcttttgtgatggtacctattggatatccttttgatgtgtttgatggtggctcatttgggctattgggtaatagaaaaatgaagtttcttgctgtagaatttgatacatttatggatgagaaatatggtgatgtgaatgataaccatgttggtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="79156" stop="77768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78858" g_stop="78068" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E706527" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78858" e_stop="78068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGA</genome_strand>
        <mrna_strand>CGGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348262" ref_strand="+" ref_description="SGN-E348262 [cTOF-27-K8]">
      <seq>tgttacccatttccccaagcaattcccctctactcctttctcaatactcatcacaaaccctagaaattctttgagataaaatacctcaaaatcatataaaaatttaatctttcttgaaattctatacatgggttcatttaagaagaaatcttgataagtcccagttgaaaaaagagtacaaagtttacagctttctatagctaaagttgagccaagatcaagaatgggtactttgtcagcttccaggtatcttatggtgttgtttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgttaatggtggtatacaaatgagtggttcaatgggttttagtgctggaagaatcttgaacaagaaaccctttaagctaattgatggaaatccaagaaaaatggtgtctttttcattgcattttgtggtttcattggcaagagaaaatggggatggatttgcttttgtgatggtacctattggatatccttttgatgtggttgatggtggctcatttgggctattgggtaatagaaaaatgaagtttcttgctgtagaatttgatacatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="79069" stop="77812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78769" g_stop="78112" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E348262" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78769" e_stop="78112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATG</genome_strand>
        <mrna_strand>TGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGGTTTCATTGGCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGGTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725416" ref_strand="+" ref_description="SGN-E725416 [LA03AC10]">
      <seq>gaattcggcacgaggattcccctctactcctttctcaatactcatcacaaaccctagaaattctttgagataaaatacctcaaaatcatataaaaatttaatctttcttgaaattctatacatgggttcatttaagaagaaatcttgataagtcccagttgaaaaaagagtacaaagtttacagctttctatagctaaagttgagccaagatcaagaatgggtactttgtcagcttccaggtatcttatggtgttgtttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgataatggcggtatacaaatgagtggttcaatgggttttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="79048" stop="78043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78748" g_stop="78343" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="421" r_length="406" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E725416" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78748" e_stop="78343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGT</genome_strand>
        <mrna_strand>ATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGATAATGGCGGTATACAAATGAGTGGTTCAATGGGTTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254276" ref_strand="+" ref_description="SGN-E254276 [cLEG-27-M20]">
      <seq>acagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagaggatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagcctgtcaatctgttatgaaattagttgcaagttcttggagtttaatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="90452" stop="89577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="89868" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E254276" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="89868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</genome_strand>
        <mrna_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254379" ref_strand="+" ref_description="SGN-E254379 [cLEG-27-M21]">
      <seq>acagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagaggatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagcctgtcaatctgttatgaaattagttgcaagttcttggagtttaatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="90452" stop="89577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="89868" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E254379" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="89868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</genome_strand>
        <mrna_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375464" ref_strand="+" ref_description="SGN-E375464 [TUS-34-H6](-)">
      <seq>cacagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagaggatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagcctgtcaatctgttatgaaattagttgcaagttcttggagtttaatctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="90453" stop="89577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="89869" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E375464" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="89869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTA</genome_strand>
        <mrna_strand>CACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694365" ref_strand="+" ref_description="SGN-E694365 [LH_Ea03L19](-)">
      <seq>gcgaaggaagagcaagagaaagctgatcaagcttttgaagaagaggaacaaggagaaggaggtttagattccaagctgacaaaaaactctagtatagctacccttgacgacaaagttgtgcccaaaaaacgaggaaggcaatctaaaaaagcttcagacctgcttgcaggtgatgcgttgagaggatcagatgataaatctttaataccagggtcaactattgaagttgtgtccggagcctttgctggattttcagggattctcaagaaggttgatagcaaggcaggattggcaactgttggattttctctgtttggcaaggagactctagctgatatagatgtcaaagaaattgtagcagaggttggctgacctgtttaggctgtggatacttttttgtctgagatgggacaagcaaaatattatgatgagtcaacagtaggcagcaggatattagagcaaaggtctacaagtgattaaagctaaggcatgttttaagctaatttgcctaggggattccacaatcaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatgcatgaatgtgtcaaataaaagaggatgagaaatcttcttcgcagctctcataaattgaagttgtcgtgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagtctgtcaatctgttaagaaattagttgcaagttctcggagtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="93742" stop="89581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93442" g_stop="93152" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93151" i_stop="92780" i_length="372">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92779" g_stop="92663" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="408" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92662" i_stop="90270" i_length="2393">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90269" g_stop="89882" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="803" r_length="395" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="825"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E694365" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93442" e_stop="93152"/>
          <exon e_start="92779" e_stop="92663"/>
          <exon e_start="90269" e_stop="89882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGCTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGTTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTGGTATGCCTAGAACACTATCCTTGTGTTATTTCGGGGTAGGGGAGAGTGGGCAAGGGAAAGCATAGTTATAAAAGTCCTGGAGCTCAGCCAAAAAAAGAGAAAAATTTGAGTTATTAACAGCTTATGTCTTCAATTTTTCCTAACATCACGCTCCCCCGCCCTCTTGGGCCTCTTCCCCCCTTGCAATGCAAAAAAGATAATACTTTGGTTATCTCCTTTATCCTGTACAGTTTGAAAGCTTATTGGTGCTAATTGCTCTCGCTACACAGTATCTTCCATTTTCTGTATGAGACTGTTCTTCTGTTACTTCACCCAAGCCAACTGAAAAATCAAAGTTTGTTCTTGACATTTAATGTGGAATTTTTCTTGCAGGCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATGGTAAGTCTTGCACTGAGTGATCACTATTCTAAAAAATATTGGTGTCCTCACTCAAGGTTCACATTGTATGTATGTAGAAGATGCATCTGCTCACTGAAATAAGATGTGATGTCTTACCAGGATAATGGTGTACCTAGGGAATACCAGGCTAGTTTAAAATAAGTAGTTGTTATCCAAATGTTCGCGTGATTTCGTCTTTTCTAATTCTTCTCCAAACATTCTTTTGGCCCCATGCTGATATATTTTACACTGTATGCTTTAATGTTTCGTATGTGTGGCATCCTTCCTCATTTGATAATATAGCCATGTAGCACAAAGATTGGCTGGCAGTCTTTTTGGGCCAGAGAATGCAAATGCGTGATGGAGATTATATGTTAAGCCCAAGACTAATAATTTATTAACATGACTGTCAAATATATGAACAAAGAAAAATAGAAAACTAATTATGATAAAGTGAAATATCAATTGTTTAGTGTCGTCTAGGTTCATTGGCAAGGAAAAATATGTATTAAACTTGATGACGACACTGAAACCGCACATTGAGTGAGGTAAATCGCTCAACATGTTTTGAGCCTCACTTCAGGGCTTAAGCACACATATGATGACACTGATGTTATGTTATCCAGAAGCAGGACAAGTCAGCTTTATAAGGATGGTCTTACTCATTTTTGAAGTTATTTTGGGGTTAAGCGTCAATTGGAGGAGGATTTATATTTTCCCTATTAAAGAAGTGGTCCAAATGGAGGAGCTGGCTGGGATTTTGGGGTGGAAGATTGAATAGCTTCCCACAACCTACTTAGGCATGCCTCTGGCCAACAAGCACTACGAGTTAGTTATCTAAGATGAGATTATCGAGAAGACAGACATGGAATTCTCAAAGTGGAAGTAGGAATTAGATTGTTTTTGATGAATGCAGTATTAGATTCCTTACATACTTGTGTGATGTCTATGTTTCCTATTCCAGTTGGGCTGGTAGATAAACTTGACAAGCTCAGAAGGGACTTTCTATGGAATGGAAATGAGGAGGATAAGGGTTTTCATTTTGTGAAATGGGATGATTTCGACTTGATAAGAATCAGGGGGTCTTGGTATCAGAAATCTGAAATTACACAATAGTTGTCTATTGATGAAGTATTTATGGAAGGAGGTAATCATGAAGAAATATGGACAGACAAGTGAATGATGCACCGATGAAGTGGTCAACACTTATAGTCTTAACAAACATGTTGTCATAAGGTGGGTGATGGCACAAAAACTATGTTCAGAAAGGAATCCCGGAACGGGCAAGTGCCTTTGATGACTATTTTCCCGGCTTTATTTTCCATATGCAGCAACCCTGAAGCGCTTCGCCACTGTGTCAGACTCTTGGACTCCTCAAGGGTTTAATATATATATGCTTCAAAAGGAACCTAAATGACTGGAAAATTGATAGGGTGGTTGATCTTTTGTAGGAAGTTGATATGTTGAGAGACACTTCCCAGCCCCAAATGCAATCAAGTAGAAACATACCAATGACGGGAGGTTCTCTATTTAACAGAGTGTATAAATTGGAAGTTTTGGGGCAACCAGGAGACAGAACAGGTCCGTGGACAAAGGTATAAAAAAGTCTAGTGCCATCCAAAATCAAGTGCTTCACTTGGTTAGTGACAGAAGAGCCTGCTTCACTGTTATGAGGCTGCAGAGACCAGCAGTCATTTATTTCTGCACTGTAAATGGTCCCTTTTCTTCAGCCTCGCCGGTAACAGTTGGACGATGTCAGAACGCACATCAGATCTTCTAAGCTGCTGGATCAGGAGAGGAAGTAGCATGTCCCCGAAGAGATGGTGTAGAGTAGTTCCATCATGTATTTGGTGGACAGTGTGGAATGAAAGAAATGGGAGGTGTTTTGAGGATAGATTTAATACTTTGCAGAAAATTAAGTGGAATTGTATTGTAAATTTTTATTTTTGGTGTAAAGAAGCAAGTGTAGAGGATACAATCTTCTAGACTCTATAATTAGCCCTTGGTTCATAGCTCTCTGTTGATAACTTTTTGGAGATCTGTATGTTGAGAAGTACAACTTACCAGTTTTTCTTAGAAAAAGAGATGAATCTCTATAGAAAAATGACAGTACAAGCTGGTTGAACTTCCAAATGGTAAAATATATAGTATACCTACCAAAAAACTACTTATAAGACTATAATAGTCCTCAGATGTTGCTTTAGAGCTCTCTAACTTTTGAAGATTTCTCCATCTTGCCATAAAACATATACAAAGGGCCTATATTTCTTTCTCAACCCCAATTTCCTCTATCGATGTTCTTTGATGCAGTATATTTACTTATCTTCCATCATATATGTTTTGTTGTTTCATGATGATTTCTATTGCATTGCGACATTTGGATTTGACTCCAGGGACAAGCAAAATCTTATGATGAGTCAACAGTAGGCAGCAGGATATTAGGGCAAAGGTCTGCAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGGATTTTATTCCACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAAT-AAA-A-GA-G-G--A------T-GCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTA</genome_strand>
        <mrna_strand>GCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGTTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGGTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTG....................................................................................................................................................................................................................................................................................................................................................................................GCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCAAAATATTATGATGAGTCAACAGTAGGCAGCAGGATATTAGAGCAAAGGTCTACAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGG-----ATTCCACAATCAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAG-T-TATGCATGAATGTGTCAAATAAAAGAGGATGAGAAATCTTCTTCGCAGCTCTCATAAATTGAAGTTGTCGTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGTCTGTCAATCTGTTAAGAAATTAGTTGCAAGTTCTCGGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375465" ref_strand="+" ref_description="SGN-E375465 [TUS-34-H6]">
      <seq>acagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagatgatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="90452" stop="89650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="89950" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E375465" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="89950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTT</genome_strand>
        <mrna_strand>ACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGATGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690525" ref_strand="+" ref_description="SGN-E690525 [LH_Ea03L19]">
      <seq>cgtctagagttaatggtcatgaaactgctgaacggatggctcgtgctcttgctaggaacttccctgatattgattttcaggtatacattccatctgtacaagtcaaaaggaaattaaaaaatggaacactttcaattaaaccaaaaccccttttcccaggatgtgtgtttctgagatgtgtactgaacaaggaaatacatgatttcattcgagaatgtactggaattggaggttttgttggatccaaggttggaaatacaaaacggcagatcaacaaacccagacctgttgatgaggatgacctggaggccatattcaaacaagcgaaggaagagcaagagaaagctgatcaagcttttgaagaagaggaacaaggagaaggaggtttagattccaagctgacaaaaaactctagtatagctacccttgacgacaaagttgtgcccaaaaaacgaggaaggcaatctaaaaaagcttcagacctgcttgcaggtgatgcgttgagaggatcagatgataaatctttaataccagggtcaactattgaagttgtgtccggagcctttgctggattttcagggattctcaagaaggttgatagcaaggcaggattggcaactgttggattttctctgtttggcaaggagactctagctgatatagatgtcaaagaaattgtagcagaggttggctgacctgtttaggctgtggatacttttttgtctgagatgggacaagcaaaatattatgatgagtcaacagtaggcagcaggatattagagcaaaggtctacaagtgattaaagctaaggcatgttttaagctaatttgcctaggggattcccacaatcacttgggtatcgaactgctgcaattttgatggagtatactgttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="96055" stop="89799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95757" g_stop="95678" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95677" i_stop="94478" i_length="1200">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94477" g_stop="94299" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="259" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94298" i_stop="93507" i_length="792">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93506" g_stop="93152" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="614" r_length="355" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93151" i_stop="92780" i_length="372">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92779" g_stop="92663" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="731" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92662" i_stop="90270" i_length="2393">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90269" g_stop="90099" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="897" r_length="166" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E690525" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95757" e_stop="95678"/>
          <exon e_start="94477" e_stop="94299"/>
          <exon e_start="93506" e_stop="93152"/>
          <exon e_start="92779" e_stop="92663"/>
          <exon e_start="90269" e_stop="90099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTTCCTGATATTGATTTTCAGGTAATAAAGATTTGTGCTTTATTGTTTGGTTTGATGGTGAAGTTCTTAATTTGGTGGTTTTGTAATTACTCTTGTGCATTACTCCTGAAATTAGAAAATCAACTCCTGAATGCATTCGAGTTTGATGTCAATATCGAAAAGGTCAAGCTGTCTATTTAGTTTCCACCATTTGATAGGGACCATTAGAATTTAGTTTGCACATAATTTAGCTCCAACTAGCAAACTAGCTTAGTTCAATCATGAAAAACATTCATTCCATTAACATGAATATGAAGAATGTAAAATGTTCAAGTATGATGAGTTATGGATGTTCATGAAAATAGGGATGTCATAGTAATCCAGCAAGAATGCGTTTAGAGTATACAACAACTACGCCTCTGTCCCAAACAAGTTGGCTCCGCATATGATTGCTCACTGAACATGTTTCTCCATTTAAGCTTTAACTCATGCTTCATTATACGGTGCGTTTAGAGGATAGTTGTGGAAAAATATAGTTTGGAGGAAGAGAGTAGGAACTAGCAAGGCGAGTGAACTATAGGCCTTAGAAACAGTATTCATTTTTTCTTTGGATAATTTTGGTGCCCGAGCCAGCTTGTAAGCACCTCAGTTAAGCCACCCACCATTACCTATAACTTCCAACCAACACAGATACTGGTATGACCTACCATTTCCCCCCCATTACAGTATTCATTTTTACAAGTAGACGAGAGCATAAGAGAAGTTCGTGAAGCCCTCATAGCAGTATATATATAGTTGCAGAGCTTGCATAATTTCCAGTTACCATGGAACTTCCAGATCATTTCTGTTGTATCAGAATGGAAGTCGTGGACCTGAAGATAACCATATTATAAAGTATAAACAGCCGTCTATCAGTTTTTGTATTGCTGTAAAAATTTTCTTTAGAGAAAATTTTTCCTCCAATACTCGTCTCAGTTTTCACTATTGATTTCCTTTGCTTGAAATCATAGTCTTTGTATTGTTTGTGTGTGTCTGTGTTTGTGGTGGTAGGGGGAGTGTTCAGTTTGCTTGCAATCATGATTGATTCTGCTCCAACCAATGTGGGCTTCCCTATTAGTTAATTTTAGGACAGTTGGAGGTTGGATTACCTCGAAATGCAAGGGTATGAAAAGTATTTAACTAATTTAGGAATTGATTTTTCAATATTTTTTGAGTTTTGACTCACTGTAAAAGTTTCTGCAGGTATACATTCCATCCGTACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAGCCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGCTTTGTTGGATCCAAGGTTGGAAATACGTAAGCATTCATTGTTGTCCCTATCACAAATAACAAGTTTACGAAGATTACTTCTTATCATCTGTGGTGGACAGAGTTACCCAATACATGTGTTGGTAGGAGGTAGCAGGTACCCTTGGAAATAGTCGATGTGTGTGCAAGTTGGCTCGGATAACATGGTTATAAAGAAAGTTTACAAGTTTTACTCAGTCAAGAAAGAGGAGGTCTTTGATTTGTTTGATATGTCAATGCAATTTTCTTTGACCTCTGGGAACTCTGTCTTTTAAACGAACAAAGACCCATGGTGTATGTGTCTGACCCGATGGAACATATGTCAATTAATATATTAACATAAAATGAGTGGAATATCCTAAGCTAACTTGGCCTAAGATTGGAATTTTTCATTTTAAAATCACTTGCACTCTAATTGTGTATAGCTTATAAAATGTGTTGGCCTAAGTTCCGAATTTTTTTACTTAATATTCACTCCCTATCTAATTATGTGTAGCTTGTAAATATGTTCATTCAGTCAGCTACTATAAGGTCTTTCTGCGAGATTAGTGATGAATGCTATTTCTGCTTGACAAAATTTCAGAATACTTATCAAATTTATGCTAATAGGTCAAGTGAATTTTGCAAGGATATCTAATTACTAGCTGCCTTTAGTTGATATCTACCATTTGATCTCTCTTGATATGACTTTTCTGTTACTTGTGTCTACGTACCCATTTTATTATTTAAAGGGATAACTTACAACATACCTGAGGTCATTTTTGATTTTTCTCAGTTGCTAAAAGTGTAGAACATTTGCAGAAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGCTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGTTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTGGTATGCCTAGAACACTATCCTTGTGTTATTTCGGGGTAGGGGAGAGTGGGCAAGGGAAAGCATAGTTATAAAAGTCCTGGAGCTCAGCCAAAAAAAGAGAAAAATTTGAGTTATTAACAGCTTATGTCTTCAATTTTTCCTAACATCACGCTCCCCCGCCCTCTTGGGCCTCTTCCCCCCTTGCAATGCAAAAAAGATAATACTTTGGTTATCTCCTTTATCCTGTACAGTTTGAAAGCTTATTGGTGCTAATTGCTCTCGCTACACAGTATCTTCCATTTTCTGTATGAGACTGTTCTTCTGTTACTTCACCCAAGCCAACTGAAAAATCAAAGTTTGTTCTTGACATTTAATGTGGAATTTTTCTTGCAGGCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATGGTAAGTCTTGCACTGAGTGATCACTATTCTAAAAAATATTGGTGTCCTCACTCAAGGTTCACATTGTATGTATGTAGAAGATGCATCTGCTCACTGAAATAAGATGTGATGTCTTACCAGGATAATGGTGTACCTAGGGAATACCAGGCTAGTTTAAAATAAGTAGTTGTTATCCAAATGTTCGCGTGATTTCGTCTTTTCTAATTCTTCTCCAAACATTCTTTTGGCCCCATGCTGATATATTTTACACTGTATGCTTTAATGTTTCGTATGTGTGGCATCCTTCCTCATTTGATAATATAGCCATGTAGCACAAAGATTGGCTGGCAGTCTTTTTGGGCCAGAGAATGCAAATGCGTGATGGAGATTATATGTTAAGCCCAAGACTAATAATTTATTAACATGACTGTCAAATATATGAACAAAGAAAAATAGAAAACTAATTATGATAAAGTGAAATATCAATTGTTTAGTGTCGTCTAGGTTCATTGGCAAGGAAAAATATGTATTAAACTTGATGACGACACTGAAACCGCACATTGAGTGAGGTAAATCGCTCAACATGTTTTGAGCCTCACTTCAGGGCTTAAGCACACATATGATGACACTGATGTTATGTTATCCAGAAGCAGGACAAGTCAGCTTTATAAGGATGGTCTTACTCATTTTTGAAGTTATTTTGGGGTTAAGCGTCAATTGGAGGAGGATTTATATTTTCCCTATTAAAGAAGTGGTCCAAATGGAGGAGCTGGCTGGGATTTTGGGGTGGAAGATTGAATAGCTTCCCACAACCTACTTAGGCATGCCTCTGGCCAACAAGCACTACGAGTTAGTTATCTAAGATGAGATTATCGAGAAGACAGACATGGAATTCTCAAAGTGGAAGTAGGAATTAGATTGTTTTTGATGAATGCAGTATTAGATTCCTTACATACTTGTGTGATGTCTATGTTTCCTATTCCAGTTGGGCTGGTAGATAAACTTGACAAGCTCAGAAGGGACTTTCTATGGAATGGAAATGAGGAGGATAAGGGTTTTCATTTTGTGAAATGGGATGATTTCGACTTGATAAGAATCAGGGGGTCTTGGTATCAGAAATCTGAAATTACACAATAGTTGTCTATTGATGAAGTATTTATGGAAGGAGGTAATCATGAAGAAATATGGACAGACAAGTGAATGATGCACCGATGAAGTGGTCAACACTTATAGTCTTAACAAACATGTTGTCATAAGGTGGGTGATGGCACAAAAACTATGTTCAGAAAGGAATCCCGGAACGGGCAAGTGCCTTTGATGACTATTTTCCCGGCTTTATTTTCCATATGCAGCAACCCTGAAGCGCTTCGCCACTGTGTCAGACTCTTGGACTCCTCAAGGGTTTAATATATATATGCTTCAAAAGGAACCTAAATGACTGGAAAATTGATAGGGTGGTTGATCTTTTGTAGGAAGTTGATATGTTGAGAGACACTTCCCAGCCCCAAATGCAATCAAGTAGAAACATACCAATGACGGGAGGTTCTCTATTTAACAGAGTGTATAAATTGGAAGTTTTGGGGCAACCAGGAGACAGAACAGGTCCGTGGACAAAGGTATAAAAAAGTCTAGTGCCATCCAAAATCAAGTGCTTCACTTGGTTAGTGACAGAAGAGCCTGCTTCACTGTTATGAGGCTGCAGAGACCAGCAGTCATTTATTTCTGCACTGTAAATGGTCCCTTTTCTTCAGCCTCGCCGGTAACAGTTGGACGATGTCAGAACGCACATCAGATCTTCTAAGCTGCTGGATCAGGAGAGGAAGTAGCATGTCCCCGAAGAGATGGTGTAGAGTAGTTCCATCATGTATTTGGTGGACAGTGTGGAATGAAAGAAATGGGAGGTGTTTTGAGGATAGATTTAATACTTTGCAGAAAATTAAGTGGAATTGTATTGTAAATTTTTATTTTTGGTGTAAAGAAGCAAGTGTAGAGGATACAATCTTCTAGACTCTATAATTAGCCCTTGGTTCATAGCTCTCTGTTGATAACTTTTTGGAGATCTGTATGTTGAGAAGTACAACTTACCAGTTTTTCTTAGAAAAAGAGATGAATCTCTATAGAAAAATGACAGTACAAGCTGGTTGAACTTCCAAATGGTAAAATATATAGTATACCTACCAAAAAACTACTTATAAGACTATAATAGTCCTCAGATGTTGCTTTAGAGCTCTCTAACTTTTGAAGATTTCTCCATCTTGCCATAAAACATATACAAAGGGCCTATATTTCTTTCTCAACCCCAATTTCCTCTATCGATGTTCTTTGATGCAGTATATTTACTTATCTTCCATCATATATGTTTTGTTGTTTCATGATGATTTCTATTGCATTGCGACATTTGGATTTGACTCCAGGGACAAGCAAAATCTTATGATGAGTCAACAGTAGGCAGCAGGATATTAGGGCAAAGGTCTGCAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGGATTTTATTCCACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTG</genome_strand>
        <mrna_strand>CGTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTCCCTGATATTGATTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATTCCATCTGTACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAACCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGTTTTGTTGGATCCAAGGTTGGAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGTTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGGTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTG....................................................................................................................................................................................................................................................................................................................................................................................GCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCAAAATATTATGATGAGTCAACAGTAGGCAGCAGGATATTAGAGCAAAGGTCTACAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGGA---T-TCCCACA-ATCACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366895" ref_strand="+" ref_description="SGN-E366895 [cLPT-6-C15]">
      <seq>gaagagaatttgctaacagctaaagagagaaggcaaatgagaaatgcgagaagagagagtaaaacaggttacagttggagagaagaagtagaggaaaagcttatcaagaaacctaagaagcaatacaagtcctggactgaagagcttaatcttgataaccttgctaaattgggtcctcaatggtgggttgttagagtttctagagttaatggtcatgaaactgctgaacggatggctcgtgctcttgctaggaactttcctgatattgattttcaggtatacattccatctatacaagtcaaaaggaaattaaaaaatggaacactttcaattaagccaaaaccccttttcccaggatgtgtgtttctgagatgtgtactgaacaaggaaatacatgatttcattcgagaatgtactggaattggaggctttgttggatccaaggttggaaatacaaaacggcagatcaacaaacccagacctgttgatgaggatgacctggaggccatattcaaacaagcgaaggaagagcaagagaaagctgatcaagcttttgaagaagaggaacaaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="96253" stop="93087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95953" g_stop="95678" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95677" i_stop="94478" i_length="1200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94477" g_stop="94299" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="455" r_length="179" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94298" i_stop="93507" i_length="792">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93506" g_stop="93387" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="575" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E366895" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95953" e_stop="95678"/>
          <exon e_start="94477" e_stop="94299"/>
          <exon e_start="93506" e_stop="93387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAATTTGCTAACAGCTAAAGAGAGAAGGCAAATGAGAAATGAGAGAAGAGAGAGTAAAACAGGTTACAATTGGAGAGAAGAAGTAGAGGAAAAGCTTATTAAGAAACCTAAGAAGCAATACAAGTCCTGGACTGAAGAGCTTAATCTTGATAACCTTGCTAAATTGGGTCCTCAATGGTGGGTTGTTAGAGTTTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTTCCTGATATTGATTTTCAGGTAATAAAGATTTGTGCTTTATTGTTTGGTTTGATGGTGAAGTTCTTAATTTGGTGGTTTTGTAATTACTCTTGTGCATTACTCCTGAAATTAGAAAATCAACTCCTGAATGCATTCGAGTTTGATGTCAATATCGAAAAGGTCAAGCTGTCTATTTAGTTTCCACCATTTGATAGGGACCATTAGAATTTAGTTTGCACATAATTTAGCTCCAACTAGCAAACTAGCTTAGTTCAATCATGAAAAACATTCATTCCATTAACATGAATATGAAGAATGTAAAATGTTCAAGTATGATGAGTTATGGATGTTCATGAAAATAGGGATGTCATAGTAATCCAGCAAGAATGCGTTTAGAGTATACAACAACTACGCCTCTGTCCCAAACAAGTTGGCTCCGCATATGATTGCTCACTGAACATGTTTCTCCATTTAAGCTTTAACTCATGCTTCATTATACGGTGCGTTTAGAGGATAGTTGTGGAAAAATATAGTTTGGAGGAAGAGAGTAGGAACTAGCAAGGCGAGTGAACTATAGGCCTTAGAAACAGTATTCATTTTTTCTTTGGATAATTTTGGTGCCCGAGCCAGCTTGTAAGCACCTCAGTTAAGCCACCCACCATTACCTATAACTTCCAACCAACACAGATACTGGTATGACCTACCATTTCCCCCCCATTACAGTATTCATTTTTACAAGTAGACGAGAGCATAAGAGAAGTTCGTGAAGCCCTCATAGCAGTATATATATAGTTGCAGAGCTTGCATAATTTCCAGTTACCATGGAACTTCCAGATCATTTCTGTTGTATCAGAATGGAAGTCGTGGACCTGAAGATAACCATATTATAAAGTATAAACAGCCGTCTATCAGTTTTTGTATTGCTGTAAAAATTTTCTTTAGAGAAAATTTTTCCTCCAATACTCGTCTCAGTTTTCACTATTGATTTCCTTTGCTTGAAATCATAGTCTTTGTATTGTTTGTGTGTGTCTGTGTTTGTGGTGGTAGGGGGAGTGTTCAGTTTGCTTGCAATCATGATTGATTCTGCTCCAACCAATGTGGGCTTCCCTATTAGTTAATTTTAGGACAGTTGGAGGTTGGATTACCTCGAAATGCAAGGGTATGAAAAGTATTTAACTAATTTAGGAATTGATTTTTCAATATTTTTTGAGTTTTGACTCACTGTAAAAGTTTCTGCAGGTATACATTCCATCCGTACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAGCCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGCTTTGTTGGATCCAAGGTTGGAAATACGTAAGCATTCATTGTTGTCCCTATCACAAATAACAAGTTTACGAAGATTACTTCTTATCATCTGTGGTGGACAGAGTTACCCAATACATGTGTTGGTAGGAGGTAGCAGGTACCCTTGGAAATAGTCGATGTGTGTGCAAGTTGGCTCGGATAACATGGTTATAAAGAAAGTTTACAAGTTTTACTCAGTCAAGAAAGAGGAGGTCTTTGATTTGTTTGATATGTCAATGCAATTTTCTTTGACCTCTGGGAACTCTGTCTTTTAAACGAACAAAGACCCATGGTGTATGTGTCTGACCCGATGGAACATATGTCAATTAATATATTAACATAAAATGAGTGGAATATCCTAAGCTAACTTGGCCTAAGATTGGAATTTTTCATTTTAAAATCACTTGCACTCTAATTGTGTATAGCTTATAAAATGTGTTGGCCTAAGTTCCGAATTTTTTTACTTAATATTCACTCCCTATCTAATTATGTGTAGCTTGTAAATATGTTCATTCAGTCAGCTACTATAAGGTCTTTCTGCGAGATTAGTGATGAATGCTATTTCTGCTTGACAAAATTTCAGAATACTTATCAAATTTATGCTAATAGGTCAAGTGAATTTTGCAAGGATATCTAATTACTAGCTGCCTTTAGTTGATATCTACCATTTGATCTCTCTTGATATGACTTTTCTGTTACTTGTGTCTACGTACCCATTTTATTATTTAAAGGGATAACTTACAACATACCTGAGGTCATTTTTGATTTTTCTCAGTTGCTAAAAGTGTAGAACATTTGCAGAAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGA</genome_strand>
        <mrna_strand>GAAGAGAATTTGCTAACAGCTAAAGAGAGAAGGCAAATGAGAAATGCGAGAAGAGAGAGTAAAACAGGTTACAGTTGGAGAGAAGAAGTAGAGGAAAAGCTTATCAAGAAACCTAAGAAGCAATACAAGTCCTGGACTGAAGAGCTTAATCTTGATAACCTTGCTAAATTGGGTCCTCAATGGTGGGTTGTTAGAGTTTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTTCCTGATATTGATTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATTCCATCTATACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAGCCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGCTTTGTTGGATCCAAGGTTGGAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356891" ref_strand="+" ref_description="SGN-E356891 [cTOS-22-K16]">
      <seq>caaattttaagcccagttaaaaatatcagaagcttgaaggattagaagatctttgtgcaagaaatcgatgaatacttacaccgatgactatgacagttgactgaattcatcaaatttagttttacatagtaactgtccattcattagcaaaaaagtgcaagtgcactggattaggatttatttccataggattaacagctgcaggcctagccagtatattgattatatatagcttatgtctaagcatattaggggaatttgataaatatatttgacatgaccaagcttatagcaaatttgattatgagaaatatctgattattgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="105060" stop="106071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105360" g_stop="105375" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105376" i_stop="105460" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105461" g_stop="105773" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="329" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E356891" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105360" e_stop="105375"/>
          <exon e_start="105461" e_stop="105773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTAAGCCCAGGTAACTTTTCAACCGTCTATTTTCTCCTTTTCAATTTGCAAAAAGCACAAACTGAAGATACAATTCCATGCCTTCATTTTTGCAGTTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTATG</genome_strand>
        <mrna_strand>CAAATTTTAAGCCCAG.....................................................................................TTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357732" ref_strand="+" ref_description="SGN-E357732 [cTOS-24-B22]">
      <seq>caaattttaagcccagttaaaaatatcagaagcttgaaggattagaagatctttgtgcaagaaatcgatgaatacttacaccgatgactatgacagttgactgaattcatcaaatttagttttacatagtaactgtccattcattagcaaaaaagtgcaagtgcactggattaggatttatttccataggattaacagctgcaggcctagccagtatattgattatatatagcttatgtctaagcatattaggggaatttgataaatatatttgacatgaccaagcttatagcaaatttgattatgagaaatatctgattattgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="105060" stop="106071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105360" g_stop="105375" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105376" i_stop="105460" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105461" g_stop="105773" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="329" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E357732" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105360" e_stop="105375"/>
          <exon e_start="105461" e_stop="105773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTAAGCCCAGGTAACTTTTCAACCGTCTATTTTCTCCTTTTCAATTTGCAAAAAGCACAAACTGAAGATACAATTCCATGCCTTCATTTTTGCAGTTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTATG</genome_strand>
        <mrna_strand>CAAATTTTAAGCCCAG.....................................................................................TTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539935" ref_strand="+" ref_description="SGN-E539935 [TUS-59-P7](-)">
      <seq>tactcccccttgggaaaatggcgttttttccttttacttggatcccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcattcaatgaaggaaactaccagctctgggatgacaagttgaaaaaatatatcgatgacttgaaagaccctggtcctagtggcaagccttactctgcaaggtacattggtagtttggtaggtgacttccatagaactcttctatatggtggcatttatggttatcctagagacagaaagagcaagaatggaaagttgaggcttttgtacgaatgtgctcccatgagcttcattgtggaacaagctggtggcaaaggatccgatggtcaccaaagagttctcgatatccaaccaactgagatacatcaacgagttccattgtacattggaagcacagaagaagttgaaaaattggagaagtacttgtcttaattccaaaatcaagacgagactgtgaatttgtaatactcgaaagaaattcttttcacaagaagtctaggaaccaattgctaaagtcattatggttcaaagctttgcggtgattcaattcataaaacaatgtaaaggtttttccatatctaaaatctgtcatcctctttcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="107186" stop="105837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106886" g_stop="106480" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106382" g_stop="106130" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="663" r_length="253" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E539935" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106886" e_stop="106480"/>
          <exon e_start="106382" e_stop="106130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCA-CCTTGGG-AAATGGCGTTTTTTCCTTTAACTTGGAT-CCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAGGTAAAAACCCCAATAGCTAAGTTAAATCTGTAACCAACAAGTGAGTATATATATCAGTCAATTGATTTTGGTGTTTCTTTTGTTTCTAACTTTGCAGATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAAATGTTTGT</genome_strand>
        <mrna_strand>TACTCCCCCTTGGGAAAATGGCGTTTTTTCCTTTTACTTGGATCCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG.................................................................................................ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292496" ref_strand="+" ref_description="SGN-E292496 [cLET-16-D8]">
      <seq>agctctgggatgacaagttgaaaaaatatatcgatgacttgaaagaccctggtcctagtggcaagccttactctgcaaggtacattggtagtttggtaggtgacttccatagaactcttctatatggtggcatttatggttatcctagagacagaaagagcaagaatggaaagttgaggcttttgtacgaatgtgctcccatgagcttcattgtggaacaagctggtggcaaaggatccgatggtcaccaaagagttctcgatatccaaccaactgagatacatcaacgagttccattgtacattggaagcacagaagaagttgaaaaattggagaagtacttgtcttaattccaaaatcaagacgagactgtgaatttgtaatactcgaaagaaattcttttcacaagaagtctaggaaccaattgctaaagtcattatggttcaaagctttgcggtgattcaattcataaaacaatgtaaaggtttttccatatctaaaatctgtcatcctctttcttgnnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="107057" stop="105840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106757" g_stop="106480" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106382" g_stop="106138" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="523" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="543"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E292496" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106757" e_stop="106480"/>
          <exon e_start="106382" e_stop="106138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAGGTAAAAACCCCAATAGCTAAGTTAAATCTGTAACCAACAAGTGAGTATATATATCAGTCAATTGATTTTGGTGTTTCTTTTGTTTCTAACTTTGCAGATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAA</genome_strand>
        <mrna_strand>AGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG.................................................................................................ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219398" ref_strand="+" ref_description="SGN-E219398 [cLEL-11-J16](-)">
      <seq>gcatttatggttatcctagagacagaaagagcaagaatggaaagttgaggcttttgtacgaatgtgctcccatgagcttcattgtggaacaagctggtggcaaaggatccgatggtcaccaaagagttctcgatatccaaccaactgagatacatcacacgagttcccttgtacattggaagcccagaagaagttgaaaaattggagaagtacttgtcttaattccaaaatcaaaacgagactgtgaatttgtaatactcgaaaaaaattcttttcccaaaaagtctaggaacccattgctaaagtcattatggttcaaagctttgcggtgattccattcataaaacaatgtaaaggtttttccatatctaaaatctgtcatcccctttcttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="106928" stop="105837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106628" g_stop="106480" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106382" g_stop="106138" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="395" r_length="246" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="427"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E219398" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106628" e_stop="106480"/>
          <exon e_start="106382" e_stop="106138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAGGTAAAAACCCCAATAGCTAAGTTAAATCTGTAACCAACAAGTGAGTATATATATCAGTCAATTGATTTTGGTGTTTCTTTTGTTTCTAACTTTGCAGATACATCA-ACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAA</genome_strand>
        <mrna_strand>GCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG.................................................................................................ATACATCACACGAGTTCCCTTGTACATTGGAAGCCCAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAAACGAGACTGTGAATTTGTAATACTCGAAAAAAATTCTTTTCCCAAAAAGTCTAGGAACCCATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCCATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCCCTTTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745344" ref_strand="+" ref_description="SGN-E745344 [GI|47105734]">
      <seq>gaaactgagaaattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcattcaatgaaggaaactaccagctctgggatgacaagttgaaaaaatatatcgatgacttgaaagaccctggtcctagtggcaagccttactctgcaaggtacattggtagtttggtaggtgacttccatagaactcttctatatggtggcatttatggttatcctagagacagaaagagcaagaatggaaagttgaggcttttgtacgaatgtgctcccatgagcttcattgtggaacaagctggtggcaaaggatccgatggtcaccaaagagttctcgatatccaaccaactgagatacatcaacgagttccattgtacattggaagcacagaagaagttgaaaaattggagaagtacttgtcttaattccaaaatcaagacgagactgtgaatttgtaatactcgaaagaaattcttttcacaagaagtctaggaaccaattgctaaagtcattatggttcaaagctttgcggtgattcaattcataaaacaatgtaaaggtttttccatatctaaaatctgtcatcctctttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108994" stop="105843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108695" g_stop="108242" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="679" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106986" g_stop="106480" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="1186" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106382" g_stop="106143" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1187" r_stop="1426" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1428" polyA_stop="1443"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E745344" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108695" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106480"/>
          <exon e_start="106382" e_stop="106143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAGGTAAAAACCCCAATAGCTAAGTTAAATCTGTAACCAACAAGTGAGTATATATATCAGTCAATTGATTTTGGTGTTTCTTTTGTTTCTAACTTTGCAGATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTC</genome_strand>
        <mrna_strand>GAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG.................................................................................................ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277478" ref_strand="+" ref_description="SGN-E277478 [cLER-3-G18]">
      <seq>agatatggaaaaacctttacattgttttatgaattgaatcaccgcaaagctttgaaccataatgactttagcaattggttcctagacttcttgtgaaaagaatttctttcgagtattacaaattcacagtctcgtcttgattttggaattaagacaagtacttctccaatttttcaacttcttctgtgcttccaatgtacaatggaactcgttgatgtatctcagttggttggatatcgagaactctttggtgaccatcggatcctttgccaccagcttgttccacaatgaagctcatgggagcacattcgtacaaaagcctcaactttccattcttgctctttctgtctctaggataaccataaatgccaccatatagaagagttctatggaagtcacctaccaaactaccaatgtaccttgcagagtaaggcttgccactaggaccagggtctttcaagtcatcgatatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="105863" stop="107035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106163" g_stop="106389" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106390" i_stop="106484" i_length="95">
            <donor d_prob="0.747" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106485" g_stop="106735" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="476" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E277478" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106163" e_stop="106389"/>
          <exon e_start="106485" e_stop="106735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATGGAAAAACCTTTACATTGTTTTATGAATTGAATCACCGCAAAGCTTTGAACCATAATGACTTTAGCAATTGGTTCCTAGACTTCTTGTGAAAAGAATTTCTTTCGAGTATTACAAATTCACAGTCTCGTCTTGATTTTGGAATTAAGACAAGTACTTCTCCAATTTTTCAACTTCTTCTGTGCTTCCAATGTACAATGGAACTCGTTGATGTATCTGCAAAGTTAGAAACAAAAGAAACACCAAAATCAATTGACTGATATATATACTCACTTGTTGGTTACAGATTTAACTTAGCTATTGGGGTTTTTACCTCAGTTGGTTGGATATCGAGAACTCTTTGGTGACCATCGGATCCTTTGCCACCAGCTTGTTCCACAATGAAGCTCATGGGAGCACATTCGTACAAAAGCCTCAACTTTCCATTCTTGCTCTTTCTGTCTCTAGGATAACCATAAATGCCACCATATAGAAGAGTTCTATGGAAGTCACCTACCAAACTACCAATGTACCTTGCAGAGTAAGGCTTGCCACTAGGACCAGGGTCTTTCAAGTCATCGATATATTTT</genome_strand>
        <mrna_strand>AGATATGGAAAAACCTTTACATTGTTTTATGAATTGAATCACCGCAAAGCTTTGAACCATAATGACTTTAGCAATTGGTTCCTAGACTTCTTGTGAAAAGAATTTCTTTCGAGTATTACAAATTCACAGTCTCGTCTTGATTTTGGAATTAAGACAAGTACTTCTCCAATTTTTCAACTTCTTCTGTGCTTCCAATGTACAATGGAACTCGTTGATGTATCT-C-AG...............................................................................................TTGGTTGGATATCGAGAACTCTTTGGTGACCATCGGATCCTTTGCCACCAGCTTGTTCCACAATGAAGCTCATGGGAGCACATTCGTACAAAAGCCTCAACTTTCCATTCTTGCTCTTTCTGTCTCTAGGATAACCATAAATGCCACCATATAGAAGAGTTCTATGGAAGTCACCTACCAAACTACCAATGTACCTTGCAGAGTAAGGCTTGCCACTAGGACCAGGGTCTTTCAAGTCATCGATATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292497" ref_strand="+" ref_description="SGN-E292497 [cLET-16-D20]">
      <seq>agctctgggatgacttgttgaaaaattatatcgatgacttgaaagaccctggtcctagtggcaagccttactctgcaaggtacattggtagtttggtaggtgacttccatagaactcttctatatggtggcatttatggttatcctagagacagaaagagcaagaatggaaagttgaggcttttgtacgaatgtgctcccatgagcttcattgtggaacaagctggtggcaaaggatccgatggtcaccaaagagttctcgatatccaaccaactgagatacatcaacgagttccattgtacattggaagcacagaagaagttgaaaaattggagaagtacttgtcttaattccaaaatcaagacgagactgtgaatttgtaatactcgaaagaaattcttttcacaagaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="107057" stop="105946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106757" g_stop="106480" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106382" g_stop="106246" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="415" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E292497" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106757" e_stop="106480"/>
          <exon e_start="106382" e_stop="106246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAGGTAAAAACCCCAATAGCTAAGTTAAATCTGTAACCAACAAGTGAGTATATATATCAGTCAATTGATTTTGGTGTTTCTTTTGTTTCTAACTTTGCAGATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCT</genome_strand>
        <mrna_strand>AGCTCTGGGATGACTTGTTGAAAAATTATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG.................................................................................................ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298488" ref_strand="+" ref_description="SGN-E298488 [cLET-41-C8]">
      <seq>ggaatatacagcccgaatgatgagtgtctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcattcaatgaaggaaactaccagctctgggatgacaagttgaaaaaatatatcgatgacttgaaagaccctggtcctagtggcaagccttactctgcaaggtacattggtagtttggtaggtgacttccatagaactcttctatatggtggcatttatggctatcctagagacagaaagagcaagaatggaaagttgaggcttttgtacgaatgtgctcccatgagcttcattgtggaacaagctggtggcaaaggatccgatggtcaccaaagagttctcgatatccaaccaactgagatacatcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="107634" stop="106175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107334" g_stop="107281" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106986" g_stop="106480" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="561" r_length="507" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106382" g_stop="106372" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="572" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E298488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107334" e_stop="107281"/>
          <exon e_start="106986" e_stop="106480"/>
          <exon e_start="106382" e_stop="106372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAGGTAAAAACCCCAATAGCTAAGTTAAATCTGTAACCAACAAGTGAGTATATATATCAGTCAATTGATTTTGGTGTTTCTTTTGTTTCTAACTTTGCAGATACATCAACG</genome_strand>
        <mrna_strand>GGAATATACAGCCCGAATGATGAGTGTCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGCTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG.................................................................................................ATACATCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265754" ref_strand="+" ref_description="SGN-E265754 [cLEI-11-O10]">
      <seq>acggagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcattcaatgaaggaaactaccagctctgggatgacaagttgaaaaaatatatcgatgacttgaaagaccctggtcctagtggcaagccttactctgcaaggtacattggtagtttggtaggtgacttccatagaactcttctatatggtggcatttatggttatcctagagacagaaagagcaagaatggaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="107754" stop="106283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107456" g_stop="107281" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106986" g_stop="106583" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="580" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E265754" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107456" e_stop="107281"/>
          <exon e_start="106986" e_stop="106583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTT</genome_strand>
        <mrna_strand>ACGGAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738150" ref_strand="+" ref_description="SGN-E738150 [LC12CC09]">
      <seq>gtaaactgagaaattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcatttcatgaaagaaactaccagctctgggatgacaagttgaaaaaatatatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108996" stop="106422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108696" g_stop="108242" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="680" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106986" g_stop="106722" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="945" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E738150" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108696" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATG</genome_strand>
        <mrna_strand>GTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTTCATGAAAGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738354" ref_strand="+" ref_description="SGN-E738354 [LC13BD09]">
      <seq>ccctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattncattcatgaaggaaactaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108964" stop="106456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108665" g_stop="108242" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="649" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106986" g_stop="106756" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="880" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E738354" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108665" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATT-CATTCAATGAAGGAAACTACCAG</genome_strand>
        <mrna_strand>CCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTNCATTC-ATGAAGGAAACTACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339951" ref_strand="+" ref_description="SGN-E339951 [cTOF-3-J20]">
      <seq>tcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcattcaatgaaagaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108965" stop="106460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108665" g_stop="108421" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108420" i_stop="108269" i_length="152">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108268" g_stop="108242" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="272" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="497" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106986" g_stop="106760" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="724" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E339951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108665" e_stop="108421"/>
          <exon e_start="108268" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTA</genome_strand>
        <mrna_strand>TCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGAC........................................................................................................................................................AAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAAGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739839" ref_strand="+" ref_description="SGN-E739839 [LC19AC12]">
      <seq>gcatactgagaaattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108996" stop="106479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108696" g_stop="108242" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="680" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106986" g_stop="106779" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="888" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E739839" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108696" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATT</genome_strand>
        <mrna_strand>GCATACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293752" ref_strand="+" ref_description="SGN-E293752 [cLET-21-M15]">
      <seq>agcttcaggtgttacacattaccattaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgaactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108775" stop="106527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108494" g_stop="108242" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="479" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106986" g_stop="106827" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="639" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E293752" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108494" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCAGGTGTTACACA-AACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTG</genome_strand>
        <mrna_strand>AGCTTCAGGTGTTACACATTACCATTAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGAACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348400" ref_strand="+" ref_description="SGN-E348400 [cTOF-27-L17]">
      <seq>cagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaattagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcangatactgcatgtactcaagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108945" stop="106597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108645" g_stop="108242" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="629" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106986" g_stop="106897" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="718" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E348400" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108645" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCT</genome_strand>
        <mrna_strand>CAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAAT-TAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCANGATACTGCATGTACTCAAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272565" ref_strand="+" ref_description="SGN-E272565 [cLEM-21-K22]">
      <seq>gaaaatcacaatggcagcaacagcaacagcttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108959" stop="106996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108659" g_stop="108242" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107296" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="628" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E272565" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108659" e_stop="108242"/>
          <exon e_start="107505" e_stop="107296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTT</genome_strand>
        <mrna_strand>GAAAATCACAATGGCAGCAACAGCAACAGCTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281727" ref_strand="+" ref_description="SGN-E281727 [cLER-14-E1]">
      <seq>tcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaagcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108790" stop="106996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108490" g_stop="108242" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107296" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="459" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E281727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108490" e_stop="108242"/>
          <exon e_start="107505" e_stop="107296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTT</genome_strand>
        <mrna_strand>TCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAAGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288232" ref_strand="+" ref_description="SGN-E288232 [cLES-16-C17]">
      <seq>aatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggntctatctttggaatatacagcccgaatgatgagtgcctagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108967" stop="106999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108667" g_stop="108242" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107299" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="633" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E288232" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108667" e_stop="108242"/>
          <exon e_start="107505" e_stop="107299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGAT</genome_strand>
        <mrna_strand>AATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGNTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270764" ref_strand="+" ref_description="SGN-E270764 [cLEM-6-L4]">
      <seq>tttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttgggtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccgggtctatctttggaatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108974" stop="107026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108674" g_stop="108242" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107326" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="613" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E270764" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108674" e_stop="108242"/>
          <exon e_start="107505" e_stop="107326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATAC</genome_strand>
        <mrna_strand>TTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTGGGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGGTCTATCTTTGGAATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342540" ref_strand="+" ref_description="SGN-E342540 [cTOF-8-N16]">
      <seq>agaaaatacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagaaagttactcaggcaactacattggggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggntctatctttgggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108960" stop="107029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108660" g_stop="108242" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107329" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="595" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E342540" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108660" e_stop="108242"/>
          <exon e_start="107505" e_stop="107329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATA</genome_strand>
        <mrna_strand>AGAAAAT-ACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAAAGTTACTCAGGCAACTACATTGGGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGNTCTATCTTTGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298382" ref_strand="+" ref_description="SGN-E298382 [cLET-41-B20]">
      <seq>aaactgagaaattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108994" stop="107101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108694" g_stop="108242" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107401" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="558" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E298382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108694" e_stop="108242"/>
          <exon e_start="107505" e_stop="107401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATT</genome_strand>
        <mrna_strand>AAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278687" ref_strand="+" ref_description="SGN-E278687 [cLER-10-J16]">
      <seq>caatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108951" stop="107142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108651" g_stop="108242" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107442" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="474" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E278687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108651" e_stop="108242"/>
          <exon e_start="107505" e_stop="107442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATG</genome_strand>
        <mrna_strand>CAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319888" ref_strand="+" ref_description="SGN-E319888 [cTOB-12-G18]">
      <seq>aatgaacttgtaaactgagaaattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="109005" stop="107156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108705" g_stop="108242" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107456" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="514" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E319888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108705" e_stop="108242"/>
          <exon e_start="107505" e_stop="107456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATC</genome_strand>
        <mrna_strand>AATGAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283046" ref_strand="+" ref_description="SGN-E283046 [cLER-17-N3]">
      <seq>aattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108985" stop="107157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108685" g_stop="108242" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107457" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="493" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E283046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108685" e_stop="108242"/>
          <exon e_start="107505" e_stop="107457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCAT</genome_strand>
        <mrna_strand>AATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281147" ref_strand="+" ref_description="SGN-E281147 [cLER-7-L1]">
      <seq>gaacttgtaaactgagaaattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="109002" stop="107934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108702" g_stop="108242" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E281147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108702" e_stop="108242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG</genome_strand>
        <mrna_strand>GAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291394" ref_strand="+" ref_description="SGN-E291394 [cLET-2-F24]">
      <seq>aaaatgacaatgggaggaacagcgacaacttcatatttaagggctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacagagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaagggcttgcaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcagggcgctgccaatattcaaggagaagatcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108958" stop="107968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108658" g_stop="108268" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E291394" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108658" e_stop="108268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGA</genome_strand>
        <mrna_strand>AAAATGACAATGGGAGGAACAGCGACAACTTCATATTTAAGGGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAGAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAAGGGCTTGCAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAGGGCGCTGCCAATATTCAAGGAGAAGATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279153" ref_strand="+" ref_description="SGN-E279153 [cLEL-4-L9](-)">
      <seq>aatacttgaaattactatggtaagttcagcatcaataactccagcttgttcttgtctcaatagccaacttgttaaagtttgtaactcatagccactctttttcttggtttgtgtaacacctgaagctgtctctattgccatgcacttaactcctccattaaatgaccttctctttgtgctgttttttgggcataaaaatgaagtctttttgtccaaggcaaataacaatggagtctttttgtctagagcacttaaatatgaagttgttgcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="108068" stop="108943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108368" g_stop="108637" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E279153" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108368" e_stop="108637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTGAAATTACTATGGTAAGTTCAGCATCAATAACTCCAGCTTGTTCTTGTCTCAATAGCCAACTTGTTAAAGTTTGTAACTCATAGCCACTCTTTTTCTTGGTTTGTGTAACACCTGAAGCTGTCTCTATTGCCATGCACTTAACTCCTCCATTAAATGACCTTCTCTTTGTGCTGTTTTTTGGGCATAAAAATGGAGTCTTTTTGTCCAAGGCAAATAAAAATGGAGTCTTTTTGTCTAGAGCACTTAAATATGAAGTTGTTGC</genome_strand>
        <mrna_strand>AATACTTGAAATTACTATGGTAAGTTCAGCATCAATAACTCCAGCTTGTTCTTGTCTCAATAGCCAACTTGTTAAAGTTTGTAACTCATAGCCACTCTTTTTCTTGGTTTGTGTAACACCTGAAGCTGTCTCTATTGCCATGCACTTAACTCCTCCATTAAATGACCTTCTCTTTGTGCTGTTTTTTGGGCATAAAAATGAAGTCTTTTTGTCCAAGGCAAATAACAATGGAGTCTTTTTGTCTAGAGCACTTAAATATGAAGTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364334" ref_strand="+" ref_description="SGN-E364334 [cLPP-20-J24]">
      <seq>taaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110674" stop="111988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110976" g_stop="111103" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111688" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="237" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364334" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110976" e_stop="111103"/>
          <exon e_start="111579" e_stop="111688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATT</genome_strand>
        <mrna_strand>TAAAAAAAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549547" ref_strand="+" ref_description="SGN-E549547 [TUS-71-G20]">
      <seq>agaaacatttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataattgtttttttacaaacaattattgttgtttgtgaagatattgcactaaaatgtttagttcttttgggttgctgaaatttttctttgtactaattcttttgtcactgagaaattataaggattnnctctcttttacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110635" stop="112689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="177" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="513" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112409" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="798" r_length="285" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E549547" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAAT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAATTGTTTTTTTACAAACAA--TTATTGTTGTTTGTGAAGATATTGCACTAAAATGTTTAGTTCTTTTGGGTTGCTGAAATTTTTCTTTGTACTAATTCTTTTGTCACTGAGAAATT-ATAAGGATTNNCTCTCTTTTACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547835" ref_strand="+" ref_description="SGN-E547835 [TUS-71-O18]">
      <seq>ctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaataaaaaatatataagtaattgtttttttacaacaattattgttgtttgtgaagatattgcacttaatgttttagttcttggggttgctgaaattttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110647" stop="112651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="167" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="503" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112351" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="727" r_length="224" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E547835" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACC-TTTTCAATAAAAA-ATATATAAGTAATTGTTTTTTTAC-AACAA--TTATTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAGTTC-TTGGGGTTGCTGAAA-TTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359972" ref_strand="+" ref_description="SGN-E359972 [cLPP-9-A10]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagaagcagtggtgctgctgaagaatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaaatataattaanttgtttttttacaaacattatttgttgtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="170" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="506" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112300" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="685" r_length="179" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E359972" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAG-AGTAGTGGTGCTGCTGAAG-ATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAAGCAGTGGTGCTGCTGAAGAATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAAAATATA-ATTAANTTGTTTTTTTACAAAC-ATTAT-TTGTTGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365006" ref_strand="+" ref_description="SGN-E365006 [cLPP-17-L17]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataattgtttttttacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="170" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="506" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112280" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="665" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E365006" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAAC</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAATTGTTTTTTTACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365148" ref_strand="+" ref_description="SGN-E365148 [cLPP-17-B21]">
      <seq>tttctccattttttctccaacacaaaaaaaaagaaaaatttaaaaagaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattataaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcaatggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataattgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110647" stop="112574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="166" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="502" r_length="336" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112274" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="655" r_length="153" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E365148" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTT</genome_strand>
        <mrna_strand>AGAAAATCAAAAA-TCACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTATAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAATGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAATTGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360437" ref_strand="+" ref_description="SGN-E360437 [cLPP-8-G11]">
      <seq>catttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110640" stop="112564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="172" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="508" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112264" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="651" r_length="143" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E360437" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362949" ref_strand="+" ref_description="SGN-E362949 [cLPP-2-A4]">
      <seq>aacatttctttctccattttttccccaacccataaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110638" stop="112564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="174" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="510" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112264" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="653" r_length="143" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362949" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360383" ref_strand="+" ref_description="SGN-E360383 [cLPP-8-D2]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcaatggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="170" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="506" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112251" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="637" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E360383" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAATGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363612" ref_strand="+" ref_description="SGN-E363612 [cLPP-3-I24]">
      <seq>tttctttctccatttttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="171" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="507" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112245" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="632" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E363612" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362777" ref_strand="+" ref_description="SGN-E362777 [cLPP-2-K9]">
      <seq>ttttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110655" stop="112541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="158" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="494" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112242" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="616" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362777" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362319" ref_strand="+" ref_description="SGN-E362319 [cLPP-10-J14]">
      <seq>aacatttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110638" stop="112496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="174" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="510" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112194" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="584" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362319" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGAT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360198" ref_strand="+" ref_description="SGN-E360198 [cLPP-14-M1]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="170" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="506" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112160" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="546" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E360198" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363073" ref_strand="+" ref_description="SGN-E363073 [cLPP-2-J18]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgatgaaggagcatacttgccagacctatgcaacaagaacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="171" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="507" r_length="336" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112156" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="543" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E363073" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGATGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362697" ref_strand="+" ref_description="SGN-E362697 [cLPP-1-K4]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="170" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="506" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112155" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="541" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362697" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAAT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360558" ref_strand="+" ref_description="SGN-E360558 [cLPP-8-D18]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagagaacatatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="171" r_length="121" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="507" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112152" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="539" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E360558" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAAC</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAGAACATATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362563" ref_strand="+" ref_description="SGN-E362563 [cLPP-1-I14]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="172" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="508" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112144" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="532" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362563" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361847" ref_strand="+" ref_description="SGN-E361847 [cLPP-12-L13]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="170" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="506" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112128" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="514" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E361847" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATAC</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364094" ref_strand="+" ref_description="SGN-E364094 [cLPP-16-A9]">
      <seq>tttctttctccattttttccccaacacaaaaaaaaaagaaaagtttattttaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110642" stop="112215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="171" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="507" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112128" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="515" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364094" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATAC</genome_strand>
        <mrna_strand>AAAAA-TCAAAAA-TCACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364196" ref_strand="+" ref_description="SGN-E364196 [cLPP-16-D20]">
      <seq>tttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaagtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacacgaaaaaggtgtgtattagaaaaagcacaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcaaaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgatatcaacaatgtcccaatattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110647" stop="112182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="166" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111882" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="470" r_length="304" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364196" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAAGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACACGAAAAAGGTGTGTATTAGAAAAAGCACAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAAAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGATATCAACAATGTCCCAATATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361706" ref_strand="+" ref_description="SGN-E361706 [cLPP-12-N5]">
      <seq>tttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaagtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110647" stop="112178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="166" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111878" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="466" r_length="300" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E361706" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAAGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361867" ref_strand="+" ref_description="SGN-E361867 [cLPP-12-F4]">
      <seq>ctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110647" stop="112178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="167" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111878" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="467" r_length="300" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E361867" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362029" ref_strand="+" ref_description="SGN-E362029 [cLPP-11-F24]">
      <seq>tccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110650" stop="112178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="162" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111878" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="462" r_length="300" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362029" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362069" ref_strand="+" ref_description="SGN-E362069 [cLPP-11-E11]">
      <seq>ctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110649" stop="112155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="163" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111855" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="440" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362069" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGC</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364470" ref_strand="+" ref_description="SGN-E364470 [cLPP-18-K13]">
      <seq>ccaacacataaaaaaagagaaagttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaagtcacttatgctgtgtataagactgaagtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110675" stop="112073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="150" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111773" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="345" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364470" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAAGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364368" ref_strand="+" ref_description="SGN-E364368 [cLPP-20-I13]">
      <seq>ccaacacaaaagaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcatgtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtattgaatatgaatgcaagacatcagaatttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110675" stop="112071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="150" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111771" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="343" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364368" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATC</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCATGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTATTGAATATGAATGCAAGACATCAGAATTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360623" ref_strand="+" ref_description="SGN-E360623 [cLPP-7-I22]">
      <seq>aaaatcacaacacaatacaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcatgtcacttatgctgtgtataagactgaggtgaaacgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggagtgtattagaaaaagcaaaaacaccaaaagatgacttagttaatagtgaatatgaatgcaagacatcataagttatggttcaaaacatgaaggaacacattgaaacatatgaatgtatagaatcttgtgggcttaatagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110692" stop="112090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110992" g_stop="111103" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111790" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="324" r_length="212" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E360623" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110992" e_stop="111103"/>
          <exon e_start="111579" e_stop="111790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAAT</genome_strand>
        <mrna_strand>AAAATCACAACACAATACAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCATGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAACGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGAGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAGTTAATAGTGAATATGAATGCAAGACATCATAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACATATGAATGTATAGAATCTTGTGGGCTTAATAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547834" ref_strand="+" ref_description="SGN-E547834 [TUS-71-O18](-)">
      <seq>cccaaaaaaaagaaaaattttaaaaaaaaatccaaaatcccaccaaaataaaagagaaacannatggcctcatcaatgaaatcatctttgatccttttctagacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataattgtttttttacaaacaattattgttgtttgtgaagatattgcacttaatgttttaattctttgggtttgctgaaatttttctttgtactaattcttttgtcactgagaatttaataaagattcttcttcttttacaaggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110679" stop="112708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111003" g_stop="111103" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="145" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="481" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112407" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="765" r_length="284" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="776"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E547834" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111003" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGA</genome_strand>
        <mrna_strand>AAAATAAAAGAGAAACANNATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTAGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAATTGTTTTTTTACAAACAA--TTATTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCTTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547508" ref_strand="+" ref_description="SGN-E547508 [TUS-71-G20](-)">
      <seq>tttttccccacacaaaaaaaaagaaaattttaaaaaaaaatcaaaactcccacaaaaataaaagagaaaacaatgggcctcatcaatgaaatcatctttgatccttttctgnacatgttcccttttcctcagggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataattgtttttttacaaacaattattgttgtttgtgaagatattgcacttaatgttttaattctttgggtttgctgaaatttttctttgtactaattcttttgtcactgagaatttaataaagattcttcttcttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110656" stop="112703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111003" g_stop="111103" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="155" r_length="101" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="491" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112402" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="770" r_length="279" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="771" polyA_stop="780"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E547508" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111003" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTAC</genome_strand>
        <mrna_strand>AAAATAAAAGAGAAAACAATGGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTGNACATGTTCCCTTTTCCTCAGGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAATTGTTTTTTTACAAACAA--TTATTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCTTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364421" ref_strand="+" ref_description="SGN-E364421 [cLPP-20-O24]">
      <seq>tgaaatcatctttgagccttttggggacatgttcccttttcctccaagtcgcttatgccgtatataaaactgaggtaaaatgtgagagtttaccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatgggtcaaaacatgaaggaacacattgaaacagatgaatggattgaatcttgggggcttaatagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110760" stop="112088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111035" g_stop="111103" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="0.82"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111788" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="279" r_length="210" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364421" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111035" e_stop="111103"/>
          <exon e_start="111579" e_stop="111788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAA</genome_strand>
        <mrna_strand>TGAAATCATCTTTGAGCCTTTTGGGGACATGTTCCCTTTTCCTCCAAGTCGCTTATGCCGTATATAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGGTCAAAACATGAAGGAACACATTGAAACAGATGAATGGATTGAATCTTGGGGGCTTAATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374067" ref_strand="-" ref_description="SGN-E374067 [TUS-33-M19]">
      <seq>tgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttttgatgatttgcttgagcctcaatttgtctccaaattatgggcccctgcttgttatcaacaatgtcccaatattggtgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggggctgctgaaaaagggggtgatgctcctgctccatctcctttttcattttaaatatttttgccccctttcaaataaaaaaaatataaataattggttttttacaaacaattattgttgtttgtgaagataatgcccttaaagttttaattctttggggttgctgaaatttttctttggactaattcttttgtccctgagaatttaataaagattttttttctttttcaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="111400" stop="135408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111700" g_stop="111914" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112121" g_stop="112407" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="499" r_length="284" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112408" i_stop="113459" i_length="1052">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113460" g_stop="113502" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="542" r_length="43" r_score="0.651"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E374067" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111700" e_stop="111914"/>
          <exon e_start="112121" e_stop="112407"/>
          <exon e_start="113460" e_stop="113502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAATTTGTTGTTTAATTGTTATTGTTTGATTTTTTTTAATTGTTGAATGAGTGAATAGAGATTTTATGGAAATAATATAATTGACTTAACAAGTTTCAAATTTTAAATCTTAAACATTATTACACAACCAAAAAAAAAAAGCCATAAGTAATTATGTACATGGCTAGACTTCTTACAACAATATGAAAGATAGAAAGAAGGCATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAATTCTAAACTTGATTTTAAATTTCAACTTTACCCTTCAACTTTCATAATGCACGAACATGCATTTTAACTATCCAACTTTTAAATAAATAAACACATGAGTCCTACATGACACAATACCCATAGGACACCATGTAGGATAAAAAATGACATGTAGGACACGTGTGTCTATTTGTTCAACTTCATAAAAATTTAACTATCTACTTGTGGACACTCAAAGTTGAAGATCCTACATGTAATTCGAAACCAAGTTAAAGGACATATTTATGTATTACGCCTAGAAAGAATAACAAATTAACAATTAATTATGATGATTGAGAGAGCCACAATACACATTAGATTCTTTTAAGGTATAAGGCATATGAGTTTTCTCATTTATATATATACTAGATAAATAATGCCCGTGCTGCGCACAGGCCTAACAATTTTAATAGATTATTTAAACTGTATAATCTTTTGTTATGATCTCATAAATACATAAATAATTTCAACTTCGATAATACTATCAAATAAAACGAAGAATTTCATTTTGTATTCGATATATTCAAAAAAAATTCATTTTGTATTTGATATATCCAACGGATGCTCATGCCTCTCAATGACGACCATGTATATATCCATTCAACATGAATTCAGTAGCGCACCTTATGTTGTGTAGAATTTAGTGGCACACACTTGTGTATGTTATATCTAACAGAGTTATATCTTCTAATGAGCTTACAATAATTTAACACAACCAAGATAACTTCAGCAAAATCTTGTGTTTCAATAGTTACTACTTGAAAAAAGAAAAGAAAAAAAAATAGTTACTACATAAAAAGAGATGA</genome_strand>
        <mrna_strand>TGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTTTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGGGCCCCTGCTTGTTATCAACAATGTCCCAATATTGGTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGGGCTGCTGAAAAAGGGGGTGATGCTCCTGCTCCATCTCCTTTTTCATTTTAAATATTTTTGCCCCCTTTCAAATAAAAA-AAATATAAATAATTGGTTTTTTACAAACAA--TTATTGTTGTTTGTGAAGATAATGCCCTTAAAGTTTTAATTCTTTGGGGTTGCTGAAATTTTTCTTTGGACTAATTCTTTTGTCCCTGAGAATTTAATAAAGATTTTTTTTCTTTTTCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228631" ref_strand="+" ref_description="SGN-E228631 [cLEL-29-P22](-)">
      <seq>aatttcatctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgccccaatattgttgacctctacttcaacttggctgttgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagtagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcacctttttaaataaaaatatatataaatgattgtttttttacaaacaattttagtgttgtttgtgaagatattgcacttaatgttttaattctttgggtttgctgaaatttttccttgtactaattcttttgtcactgagaatttaataaagattcttcttcttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="111499" stop="135401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111799" g_stop="111914" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112121" g_stop="112401" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="397" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112402" i_stop="113457" i_length="1056">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113458" g_stop="113478" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="418" r_length="21" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E228631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111799" e_stop="111914"/>
          <exon e_start="112121" e_stop="112401"/>
          <exon e_start="113458" e_stop="113478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAATTTGTTGTTTAATTGTTATTGTTTGATTTTTTTTAATTGTTGAATGAGTGAATAGAGATTTTATGGAAATAATATAATTGACTTAACAAGTTTCAAATTTTAAATCTTAAACATTATTACACAACCAAAAAAAAAAAGCCATAAGTAATTATGTACATGGCTAGACTTCTTACAACAATATGAAAGATAGAAAGAAGGCATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAATTCTAAACTTGATTTTAAATTTCAACTTTACCCTTCAACTTTCATAATGCACGAACATGCATTTTAACTATCCAACTTTTAAATAAATAAACACATGAGTCCTACATGACACAATACCCATAGGACACCATGTAGGATAAAAAATGACATGTAGGACACGTGTGTCTATTTGTTCAACTTCATAAAAATTTAACTATCTACTTGTGGACACTCAAAGTTGAAGATCCTACATGTAATTCGAAACCAAGTTAAAGGACATATTTATGTATTACGCCTAGAAAGAATAACAAATTAACAATTAATTATGATGATTGAGAGAGCCACAATACACATTAGATTCTTTTAAGGTATAAGGCATATGAGTTTTCTCATTTATATATATACTAGATAAATAATGCCCGTGCTGCGCACAGGCCTAACAATTTTAATAGATTATTTAAACTGTATAATCTTTTGTTATGATCTCATAAATACATAAATAATTTCAACTTCGATAATACTATCAAATAAAACGAAGAATTTCATTTTGTATTCGATATATTCAAAAAAAATTCATTTTGTATTTGATATATCCAACGGATGCTCATGCCTCTCAATGACGACCATGTATATATCCATTCAACATGAATTCAGTAGCGCACCTTATGTTGTGTAGAATTTAGTGGCACACACTTGTGTATGTTATATCTAACAGAGTTATATCTTCTAATGAGCTTACAATAATTTAACACAACCAAGATAACTTCAGCAAAATCTTGTGTTTCAATAGTTACTACTTGAAAAAAGAAAAGAAAAAAAAA</genome_strand>
        <mrna_strand>AATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229303" ref_strand="+" ref_description="SGN-E229303 [cLEL-29-P22](-)">
      <seq>aatttgtctccaaattatgtgcccctgcttgttatcaacaatgccccaatattgttgacctctacttcaacttggctgttgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagtagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcacccttttaaataaaaatatatataaatgattgtttttttacaaacaattttagtgttgtttgtgaagatattgcacttaatgttttaattctttgggtttgctgaaatttttccttgtactaattcttttgtcactgagaatttaataaagattcttcttcttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="111528" stop="135401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111828" g_stop="111914" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112121" g_stop="112401" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="368" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112402" i_stop="113457" i_length="1056">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113458" g_stop="113478" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="389" r_length="21" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E229303" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111828" e_stop="111914"/>
          <exon e_start="112121" e_stop="112401"/>
          <exon e_start="113458" e_stop="113478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAATTTGTTGTTTAATTGTTATTGTTTGATTTTTTTTAATTGTTGAATGAGTGAATAGAGATTTTATGGAAATAATATAATTGACTTAACAAGTTTCAAATTTTAAATCTTAAACATTATTACACAACCAAAAAAAAAAAGCCATAAGTAATTATGTACATGGCTAGACTTCTTACAACAATATGAAAGATAGAAAGAAGGCATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAATTCTAAACTTGATTTTAAATTTCAACTTTACCCTTCAACTTTCATAATGCACGAACATGCATTTTAACTATCCAACTTTTAAATAAATAAACACATGAGTCCTACATGACACAATACCCATAGGACACCATGTAGGATAAAAAATGACATGTAGGACACGTGTGTCTATTTGTTCAACTTCATAAAAATTTAACTATCTACTTGTGGACACTCAAAGTTGAAGATCCTACATGTAATTCGAAACCAAGTTAAAGGACATATTTATGTATTACGCCTAGAAAGAATAACAAATTAACAATTAATTATGATGATTGAGAGAGCCACAATACACATTAGATTCTTTTAAGGTATAAGGCATATGAGTTTTCTCATTTATATATATACTAGATAAATAATGCCCGTGCTGCGCACAGGCCTAACAATTTTAATAGATTATTTAAACTGTATAATCTTTTGTTATGATCTCATAAATACATAAATAATTTCAACTTCGATAATACTATCAAATAAAACGAAGAATTTCATTTTGTATTCGATATATTCAAAAAAAATTCATTTTGTATTTGATATATCCAACGGATGCTCATGCCTCTCAATGACGACCATGTATATATCCATTCAACATGAATTCAGTAGCGCACCTTATGTTGTGTAGAATTTAGTGGCACACACTTGTGTATGTTATATCTAACAGAGTTATATCTTCTAATGAGCTTACAATAATTTAACACAACCAAGATAACTTCAGCAAAATCTTGTGTTTCAATAGTTACTACTTGAAAAAAGAAAAGAAAAAAAAA</genome_strand>
        <mrna_strand>AATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCCTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337576" ref_strand="+" ref_description="SGN-E337576 [cTOE-11-B3]">
      <seq>ccagtagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="117968" stop="118879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118268" g_stop="118579" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E337576" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118268" e_stop="118579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTAATCGTATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTC-ATCGATTGCACGACCATCGTGCCGACGACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGAT</genome_strand>
        <mrna_strand>CCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGAT-AAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337619" ref_strand="+" ref_description="SGN-E337619 [cTOE-11-P21]">
      <seq>gtagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="117971" stop="118967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118271" g_stop="118667" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E337619" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118271" e_stop="118667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCGTATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTC-ATCGATTGCACGACCATCGTGCCGACGACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGATAATAGGATAGTGGCCTACCATGGTAGTGACAGGTGACAGAGAATTAGGGTTTGATTCCGGAGAAGGATCCTGAGAAACGGCTACCACA</genome_strand>
        <mrna_strand>GTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGAT-AAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336892" ref_strand="+" ref_description="SGN-E336892 [cTOE-5-J3]">
      <seq>tagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctgacacggggaggtagtgacaataaataacaataccgggctctatgagtctggtaattggaatgagtacaatctaaatcccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="117972" stop="119089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118272" g_stop="118789" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E336892" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118272" e_stop="118789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCGTATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTC-ATCGATTGCACGACCATCGTGCCGACGACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGATAATAGGATAGTGGCCTACCATGGTAGTGACAGGTGACAGAGAATTAGGGTTTGATTCCGGAGAAGGATCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGTAGGCGTGCAAATTACCTAATCTTGACAGGGGGAGGTAATGACAATTAATAAAAATACCCGGCTCTATGAGTCTGATAATTGGAATGAGTACAATCTAAATCCCTTAA</genome_strand>
        <mrna_strand>TAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGAT-AAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336916" ref_strand="+" ref_description="SGN-E336916 [cTOE-5-L16]">
      <seq>tagtcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="117972" stop="118955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118272" g_stop="118655" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E336916" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118272" e_stop="118655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCGTATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTC-ATCGATTGCACGACCATCGTGCCGACGACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGATAATAGGATAGTGGCCTACCATGGTAGTGACAGGTGACAGAGAATTAGGGTTTGATTCCGGAGAAGGATCCTGAGAA</genome_strand>
        <mrna_strand>TAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGAT-AAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337007" ref_strand="+" ref_description="SGN-E337007 [cTOE-20-J3]">
      <seq>tcatatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggctgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctgacacggtgaggtagtgacaataaataacaataccgggctctatgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="117975" stop="119111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118275" g_stop="118811" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E337007" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118275" e_stop="118811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTC-ATCGATTGCACGACCATCGTGCCGAC-GACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGATAATAGGATAGTGGCCTACCATGGTAGTGACAGGTGACAGAGAATTAGGGTTTGATTCCGGAGAAGGATCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGTAGGCGTGCAAATTACCTAATCTTGACAGGGGGAGGTAATGACAATTAATAAAAATACCCGGCTCTATGAGTCTGATAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAG</genome_strand>
        <mrna_strand>TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGAT-AAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCTGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGTGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338003" ref_strand="+" ref_description="SGN-E338003 [cTOE-14-E10]">
      <seq>atatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctaccatggtggtgacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctgacacggggaggtagtgacaataaataacaataccgggctctatgagtctggtaattggaatgagtacaatctaaatccctttggatcttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="117978" stop="119087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118277" g_stop="118787" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E338003" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118277" e_stop="118787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTC-ATCGATTGCACGACCATCGTGCCGACGACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGATAATAGGATAGTGGCCTACCATGGTAGTGACAGGTGACAGAGAATTAGGGTTTGATTCCGGAGAAGGATCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGTAGGCGTGCAAATTACCTAATCTTGACAGGGGGAGGTAATGACAATTAATAAAAATACCCGGCTCTATGAGTCTGATAATTGGAATGAGTACAATCTAAATCCCTT</genome_strand>
        <mrna_strand>ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGAT-AAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336957" ref_strand="+" ref_description="SGN-E336957 [cTOE-5-K16]">
      <seq>tatgcttgtctcaaagattaagccatgcatgtgtaagtatgaacaaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtatctactactcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttctggaagggatgcatttattagataaaaggtcgacgcgggctctgcccgttgctgcgatgattcatgataactcgacggatcgcacggccatcgtgccggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatagtggcctacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="117978" stop="118899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118278" g_stop="118599" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E336957" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118278" e_stop="118599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTC-ATCGATTGCACGACCATCGTGCCGACGACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGATAATAGGATAGTGGCCTACCA</genome_strand>
        <mrna_strand>TATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGAT-AAAAGGTCGACGCGGGCTCTGCCCGTTGCTGCGATGATTCATGATAACTCGACGGATCGCACGGCCATCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362458" ref_strand="+" ref_description="SGN-E362458 [cLPP-1-O6]">
      <seq>tttctccatttcttttttccaacaacataaaaaaaatatgcaaaaaaaaatcaaattcccaactaaacaaaagagaaaaacaagaaaaataaatgggttcatcaatgaaatcatctttgatccttttttttacatgttcccttttcctccaagtcgcttatgccgtatataaaactgaggtaaaatgtgagagtttaccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcatctgatgatttgcttgagcctcaatttgtttccaagttatgtgcccctgcttgttatcaacaatgccccaatattgttgacctttacttcaacttggctgctggtgaaggagcatacttgccagacatatgcaacaagaacaaaggaaaaatgaaaatagtggtgctgctgaaaaaggtgttgatgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="120376" stop="122264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120676" g_stop="120851" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493">
            <donor d_prob="0.685" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121345" g_stop="121680" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="510" r_length="336" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121885" g_stop="121958" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="586" r_length="76" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E362458" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120676" e_stop="120851"/>
          <exon e_start="121345" e_stop="121680"/>
          <exon e_start="121885" e_stop="121958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCATTTTCTTTTTTCCAACAACAAAAAAAAAATATACAAAAAAATAATCAAATTCCCAACTAAACAAAAGAGAAAAACAAGAAAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAAGTGAGTTAGTTGATTTCTTTACTAATCGTGAAAATAATATATTTAGTTGAATCTCATCAATTTTTCTTAATCAATATTATGAAAAAACAATTTGTTGAATTGAATCTCGTCTTTATTCATGCATGAACATATAATTTGGATTTATTGATTTGTTAATAATAATTCTGAAAACACTGAACTCAGTTGAATCACTCTTGATCAATCTCTCTTAATGCACATTATTCTTGTACTCCACTCTCCATCAATCTTCACACTTTTCTTAAGTCTGTCTCTAAAAAGAATATTACATTTTTTTAATCATAAATAACTTTAACTTTAAAATATTAATTTATTATCTTTACCGAATGATTCATAGCCACACATATTCTAAGATTTATTTTAGACAACAAATTGATTTATTTTTCTTTAACTTTATATGTACTTTAGTTAAACTGTGTCGCATAAATTGAAACAGAACGAACAACTACCTAACCATTCTCTTTCTTTTTTGTAGCTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAGGTAAATCTAACGACTTTACGATTCAGTGCTGATGTATTACTCGTTAAAAAATATAAAACATAGGTATACTTTTGTTGTCTAATAAATGACGCATAGTACAAAATATGTATAATTTGTTAGACAATAAAAATATATATATGCATTATTTTTTTATTATTATAATCGTCTTAATTATTTCGAGATTTTGTATTTATTTATGTGTAGGAGCATACTTGCCAGACATATGCAACAAGAAC-AA-GAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGAT</genome_strand>
        <mrna_strand>TTTCTCCA-TTTCTTTTTTCCAACAACATAAAAAAAATATGCAAAAAAA-AATCAAATTCCCAACTAAACAAAAGAGAAAAACAAGAAAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCCGTATATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTTTCCAAGTTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAG............................................................................................................................................................................................................GAGCATACTTGCCAGACATATGCAACAAGAACAAAGGAAAAATGAAAATAGTGGTGCTGCTGAAAAAGGTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363556" ref_strand="+" ref_description="SGN-E363556 [cLPP-3-C19]">
      <seq>aaaataaatgggttcatcaatgaaatcatctttgatccttttttttacatgttcccttttcctccaagtcgcttatgccgtatataaaactgaggtaaaatgtgagagtttaccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcatctgatgatttgcttgagcctcaatttgtttccaagttatgtgcccctgcttgttatcaacaatgccccaatattgttgacctttacttcaacttggctgctggtgaaggagcatacttgccagacatatgcaacaagaacaagaaattgaagagtagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcatttttctaaaattatttttacaccctattataaaaatatatatatatatgaataatttcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="120463" stop="122331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120763" g_stop="120851" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493">
            <donor d_prob="0.685" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121345" g_stop="121680" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="425" r_length="336" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121885" g_stop="122040" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="585" r_length="160" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E363556" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120763" e_stop="120851"/>
          <exon e_start="121345" e_stop="121680"/>
          <exon e_start="121885" e_stop="122040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAAGTGAGTTAGTTGATTTCTTTACTAATCGTGAAAATAATATATTTAGTTGAATCTCATCAATTTTTCTTAATCAATATTATGAAAAAACAATTTGTTGAATTGAATCTCGTCTTTATTCATGCATGAACATATAATTTGGATTTATTGATTTGTTAATAATAATTCTGAAAACACTGAACTCAGTTGAATCACTCTTGATCAATCTCTCTTAATGCACATTATTCTTGTACTCCACTCTCCATCAATCTTCACACTTTTCTTAAGTCTGTCTCTAAAAAGAATATTACATTTTTTTAATCATAAATAACTTTAACTTTAAAATATTAATTTATTATCTTTACCGAATGATTCATAGCCACACATATTCTAAGATTTATTTTAGACAACAAATTGATTTATTTTTCTTTAACTTTATATGTACTTTAGTTAAACTGTGTCGCATAAATTGAAACAGAACGAACAACTACCTAACCATTCTCTTTCTTTTTTGTAGCTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAGGTAAATCTAACGACTTTACGATTCAGTGCTGATGTATTACTCGTTAAAAAATATAAAACATAGGTATACTTTTGTTGTCTAATAAATGACGCATAGTACAAAATATGTATAATTTGTTAGACAATAAAAATATATATATGCATTATTTTTTTATTATTATAATCGTCTTAATTATTTCGAGATTTTGTATTTATTTATGTGTAGGAGCATACTTGCCAGACATATGCAACAAGAACAAGAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTATAAAATTATTTTTACACCTTATTAT--AAA-ATA-ATATATATGAATAATTTCTTTTTA</genome_strand>
        <mrna_strand>AAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCCGTATATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTTTCCAAGTTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAG............................................................................................................................................................................................................GAGCATACTTGCCAGACATATGCAACAAGAACAAGAAATTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTCTAAAATTATTTTTACACCCTATTATAAAAATATATATATATATGAATAATTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547850" ref_strand="+" ref_description="SGN-E547850 [TUS-71-P3]">
      <seq>atgaaatcatctttgatccttttttttacatgttcccttttcctccaagtcgcttatgccgtatataaaactgaggtaaaatgtgagagtttaccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcatctgatgatttgcttgagcctcaatttgtttccaagttatgtgcccctgcttgttatcaacaatgccccaatattgttgacctttacttcaacttggctgctggtgaaggagcatacttgccagacatatgcaacaagaacaagaaattgaagagtagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcatttttctaaaattatttttacaccttattataaaaatatatatatatatgaataatttctttttacaagaagatattaaattttttttcattttttaattttttgtaccaattattttttcagtgaaaatttaataaagatcctccttttttttaaaanaaaaaaaanaaannaaaaannaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="120482" stop="122437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120782" g_stop="120851" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493">
            <donor d_prob="0.685" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121345" g_stop="121680" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="406" r_length="336" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121885" g_stop="122138" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="658" r_length="252" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="692"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E547850" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120782" e_stop="120851"/>
          <exon e_start="121345" e_stop="121680"/>
          <exon e_start="121885" e_stop="122138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAAGTGAGTTAGTTGATTTCTTTACTAATCGTGAAAATAATATATTTAGTTGAATCTCATCAATTTTTCTTAATCAATATTATGAAAAAACAATTTGTTGAATTGAATCTCGTCTTTATTCATGCATGAACATATAATTTGGATTTATTGATTTGTTAATAATAATTCTGAAAACACTGAACTCAGTTGAATCACTCTTGATCAATCTCTCTTAATGCACATTATTCTTGTACTCCACTCTCCATCAATCTTCACACTTTTCTTAAGTCTGTCTCTAAAAAGAATATTACATTTTTTTAATCATAAATAACTTTAACTTTAAAATATTAATTTATTATCTTTACCGAATGATTCATAGCCACACATATTCTAAGATTTATTTTAGACAACAAATTGATTTATTTTTCTTTAACTTTATATGTACTTTAGTTAAACTGTGTCGCATAAATTGAAACAGAACGAACAACTACCTAACCATTCTCTTTCTTTTTTGTAGCTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAGGTAAATCTAACGACTTTACGATTCAGTGCTGATGTATTACTCGTTAAAAAATATAAAACATAGGTATACTTTTGTTGTCTAATAAATGACGCATAGTACAAAATATGTATAATTTGTTAGACAATAAAAATATATATATGCATTATTTTTTTATTATTATAATCGTCTTAATTATTTCGAGATTTTGTATTTATTTATGTGTAGGAGCATACTTGCCAGACATATGCAACAAGAACAAGAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTATAAAATTATTTTTACACCTTATTAT--AAA-ATA-ATATATATGAATAATTTCTTTTTACAAGAAGATATTAGAATTTTTTTCCATGTGACGTTTTAATTTTTTGTACCAATTATTTTTTCAGTGAAAATTTAATAAAGACTCTCCTTTTTTTTTAC</genome_strand>
        <mrna_strand>ATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCCGTATATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTTTCCAAGTTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAG............................................................................................................................................................................................................GAGCATACTTGCCAGACATATGCAACAAGAACAAGAAATTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTCTAAAATTATTTTTACACCTTATTATAAAAATATATATATATATGAATAATTTCTTTTTACAAGAAGATATTA-AATTTTTTTTCAT-T----TTTTAATTTTTTGTACCAATTATTTTTTCAGTGAAAATTTAATAAAGATCCTCCTTTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364305" ref_strand="+" ref_description="SGN-E364305 [cLPP-20-O12]">
      <seq>tgaaatcatctttgatccttttttgtacatgttcccttttcctccaagtcgcttatgccgtatataaaactgaggtaaaatgtgagagtttaccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaataaaaatttctttggaatttcatctgatgatttgcttgagcctcaatttgttttcaagttatgtgcccctgcttgttatcaacaatgccccaatattggtgacctttacttcaacttggctgctggtgaaggagcatacttgccagacatatgcaacaagaacaagaaattgaagagtagtggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="120483" stop="122239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120783" g_stop="120851" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493">
            <donor d_prob="0.685" d_score="0.96"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121345" g_stop="121680" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="405" r_length="336" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121885" g_stop="121939" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="460" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364305" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120783" e_stop="120851"/>
          <exon e_start="121345" e_stop="121680"/>
          <exon e_start="121885" e_stop="121939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAAGTGAGTTAGTTGATTTCTTTACTAATCGTGAAAATAATATATTTAGTTGAATCTCATCAATTTTTCTTAATCAATATTATGAAAAAACAATTTGTTGAATTGAATCTCGTCTTTATTCATGCATGAACATATAATTTGGATTTATTGATTTGTTAATAATAATTCTGAAAACACTGAACTCAGTTGAATCACTCTTGATCAATCTCTCTTAATGCACATTATTCTTGTACTCCACTCTCCATCAATCTTCACACTTTTCTTAAGTCTGTCTCTAAAAAGAATATTACATTTTTTTAATCATAAATAACTTTAACTTTAAAATATTAATTTATTATCTTTACCGAATGATTCATAGCCACACATATTCTAAGATTTATTTTAGACAACAAATTGATTTATTTTTCTTTAACTTTATATGTACTTTAGTTAAACTGTGTCGCATAAATTGAAACAGAACGAACAACTACCTAACCATTCTCTTTCTTTTTTGTAGCTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAGGTAAATCTAACGACTTTACGATTCAGTGCTGATGTATTACTCGTTAAAAAATATAAAACATAGGTATACTTTTGTTGTCTAATAAATGACGCATAGTACAAAATATGTATAATTTGTTAGACAATAAAAATATATATATGCATTATTTTTTTATTATTATAATCGTCTTAATTATTTCGAGATTTTGTATTTATTTATGTGTAGGAGCATACTTGCCAGACATATGCAACAAGAACAAGAAGTTGAAGAGTAGTGGTGC</genome_strand>
        <mrna_strand>TGAAATCATCTTTGATCCTTTTTTGTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCCGTATATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAAAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTTTTCAAGTTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGGTGACCTTTACTTCAACTTGGCTGCTGGTGAAG............................................................................................................................................................................................................GAGCATACTTGCCAGACATATGCAACAAGAACAAGAAATTGAAGAGTAGTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364421" ref_strand="+" ref_description="SGN-E364421 [cLPP-20-O24]">
      <seq>tgaaatcatctttgagccttttggggacatgttcccttttcctccaagtcgcttatgccgtatataaaactgaggtaaaatgtgagagtttaccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatgggtcaaaacatgaaggaacacattgaaacagatgaatggattgaatcttgggggcttaatagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="110760" stop="121854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120783" g_stop="120851" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493">
            <donor d_prob="0.685" d_score="0.90"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121345" g_stop="121554" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="279" r_length="210" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E364421" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120783" e_stop="120851"/>
          <exon e_start="121345" e_stop="121554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAAGTGAGTTAGTTGATTTCTTTACTAATCGTGAAAATAATATATTTAGTTGAATCTCATCAATTTTTCTTAATCAATATTATGAAAAAACAATTTGTTGAATTGAATCTCGTCTTTATTCATGCATGAACATATAATTTGGATTTATTGATTTGTTAATAATAATTCTGAAAACACTGAACTCAGTTGAATCACTCTTGATCAATCTCTCTTAATGCACATTATTCTTGTACTCCACTCTCCATCAATCTTCACACTTTTCTTAAGTCTGTCTCTAAAAAGAATATTACATTTTTTTAATCATAAATAACTTTAACTTTAAAATATTAATTTATTATCTTTACCGAATGATTCATAGCCACACATATTCTAAGATTTATTTTAGACAACAAATTGATTTATTTTTCTTTAACTTTATATGTACTTTAGTTAAACTGTGTCGCATAAATTGAAACAGAACGAACAACTACCTAACCATTCTCTTTCTTTTTTGTAGCTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAA</genome_strand>
        <mrna_strand>TGAAATCATCTTTGAGCCTTTTGGGGACATGTTCCCTTTTCCTCCAAGTCGCTTATGCCGTATATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGGTCAAAACATGAAGGAACACATTGAAACAGATGAATGGATTGAATCTTGGGGGCTTAATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547849" ref_strand="+" ref_description="SGN-E547849 [TUS-71-P3](-)">
      <seq>ttcccttttcctccaagtggcttatgcggtatataaaactgaggtaaaatgtgagagtttcccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatggttcaaaacatgaaggaacccattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcatctgatgatttgcttgagcctcaatttgtttccaagttatgtgcccctgcttgttatcaacaatgccccaatattgttgacctttacttcaacttggctgctggtgaaggagcatacttgccagacatatgcaacaagaacaagaaattgaagagtagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcatttttctaaaattatttttaccccttattataaaaatatatatatatatgaataatttctttttacaagaagatattaaattttttttcattttttaattttttgtaccaattattttttcagtgaaaatttaataaagatcctccttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="120514" stop="135401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120814" g_stop="120851" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493">
            <donor d_prob="0.685" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121345" g_stop="121680" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="374" r_length="336" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121885" g_stop="122138" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="626" r_length="252" r_score="0.913"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122139" i_stop="123398" i_length="1260">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123399" g_stop="123434" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="662" r_length="36" r_score="0.694"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E547849" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120814" e_stop="120851"/>
          <exon e_start="121345" e_stop="121680"/>
          <exon e_start="121885" e_stop="122138"/>
          <exon e_start="123399" e_stop="123434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAAGTGAGTTAGTTGATTTCTTTACTAATCGTGAAAATAATATATTTAGTTGAATCTCATCAATTTTTCTTAATCAATATTATGAAAAAACAATTTGTTGAATTGAATCTCGTCTTTATTCATGCATGAACATATAATTTGGATTTATTGATTTGTTAATAATAATTCTGAAAACACTGAACTCAGTTGAATCACTCTTGATCAATCTCTCTTAATGCACATTATTCTTGTACTCCACTCTCCATCAATCTTCACACTTTTCTTAAGTCTGTCTCTAAAAAGAATATTACATTTTTTTAATCATAAATAACTTTAACTTTAAAATATTAATTTATTATCTTTACCGAATGATTCATAGCCACACATATTCTAAGATTTATTTTAGACAACAAATTGATTTATTTTTCTTTAACTTTATATGTACTTTAGTTAAACTGTGTCGCATAAATTGAAACAGAACGAACAACTACCTAACCATTCTCTTTCTTTTTTGTAGCTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAGGTAAATCTAACGACTTTACGATTCAGTGCTGATGTATTACTCGTTAAAAAATATAAAACATAGGTATACTTTTGTTGTCTAATAAATGACGCATAGTACAAAATATGTATAATTTGTTAGACAATAAAAATATATATATGCATTATTTTTTTATTATTATAATCGTCTTAATTATTTCGAGATTTTGTATTTATTTATGTGTAGGAGCATACTTGCCAGACATATGCAACAAGAACAAGAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTATAAAATTATTTTTACACCTTATTAT--AAA-ATA-ATATATATGAATAATTTCTTTTTACAAGAAGATATTAGAATTTTTTTCCATGTGACGTTTTAATTTTTTGTACCAATTATTTTTTCAGTGAAAATTTAATAAAGACTCTCCTTTTTTTTTACGTGAGATTTATTGTTTAATTGTGTATTTAAACAAGAATTTAAAGAAAATTGTTAGTGAACTTTGAAAAATGAAAAGAAAGAAAATTATGCCTAATTATTAAATTAATTAAAATTGGTTATACGAATTCTCGTTAGATTATATGTAAATTTAAGCTTAGCTAATAAAACACTATACTAATTAATGGGTGGATTGTAACTTACAATTTTTTTAAAAGTATGACGTATTATGTTTTTGCACCATCTCCTTTAGTACTAATTTAAACCTAGTTTAGAGTGAAAATATTTTTAAATTTTTTGTTTATTATAGTTGGGCATTATTTTATATGCATATAGATTTTGATAGTAGATCATGAAACTTTTTTTGAAAATTCCAATAACAAATATAATTTCAATTAAAATTAAAAATTTAAAAATATTTGAATATCAATTTAAAATGTATGATAAAACAGAACTTTTCATCATTTTATATACTCATGATAATGGTAAATATAACTAAACAAATAAAGATACGTGGAAGACTCTAAAAAGAATATCAAAATTGAATGAAATGGTCCACAAGACCAAATTTTTTATAAATAGGCTAAAAAAACATAAAATGTTAATTTTATCCTTCGAACAATAAATACACATATTAACAGAGTGTTGCTTCTTATTCACTTTTATTAGATAGTAAAATGAAAAATACTCTGCATATCAAGCATTTTTCCATATTAATAAAAATAATTTCAAGTAATTTGATGTAAATAATAAAAATTAAAATTTTGCTTTATCTGAATTGAGTTTAGATTAATCAAAGTAAAAAAAAATAATATTTCTTTTAGTTTTTCATTTGATATTCAGAGTCTAAATTAGAGCTCTAATTAAATTTAAATCTCGTATTACATGATCAATCTGAGGGTAACGTTCTCAAAATAATTTTCTCCATATCAAAAGTCAAATATGAGACTGGCCTATAATTAATTAAGGACGGAATATTCTCAATATCACACTATAACTCAAGTTGCTAAAAAAGCTTTTTTGAATGTATTGTATGTGTCAAACATAGTTCCTTTTTTTAAAAAATTATGGACGATATTTTCTAAGAGTTGGAGCAATTTTTTTAAAAAAAATATGGACGATATTTTCAAAGAGTTTGAACAACAACGTAGGTTACAAGGGTAAAAATGGAAAAACAAACAAATTTCGAAGTAACTAGCTGTCTTCACTCTCTCTATATACCTACCTTCGTCTATTTTGCAGTTGTACTTAGGCGGGTACCCAAAACAACATAAAATCAAAATTTTAAAACACAAAAAA</genome_strand>
        <mrna_strand>TTCCCTTTTCCTCCAAGTGGCTTATGCGGTATATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTCCCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGTTCAAAACATGAAGGAACCCATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTTTCCAAGTTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAG............................................................................................................................................................................................................GAGCATACTTGCCAGACATATGCAACAAGAACAAGAAATTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTCTAAAATTATTTTTACCCCTTATTATAAAAATATATATATATATGAATAATTTCTTTTTACAAGAAGATATTA-AATTTTTTTTCAT-T----TTTTAATTTTTTGTACCAATTATTTTTTCAGTGAAAATTTAATAAAGATCCTCCTTTTTTTTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344541" ref_strand="+" ref_description="SGN-E344541 [cTOF-14-N18]">
      <seq>tcaaaactcaaaaccctcacaagtcctctttctcttctttgcgcctctcattcttggattcactttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatggaggacttgatgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144870" stop="150970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145170" g_stop="145270" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="142" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="195" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="234" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="304" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150677" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="539" r_length="235" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E344541" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145170" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTCAAAACCCTCACAAGTCCTCTTTCTCTTCTTTGCGCCTCTCATTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGA</genome_strand>
        <mrna_strand>TCAAAACTCAAAACCCTCACAAGTCCTCTTTCTCTTCTTTGCGCCTCTCATTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718784" ref_strand="+" ref_description="SGN-E718784 [FC05DC03]">
      <seq>tctttctcttctttgcgcctctcattcttggattcactttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatgggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144896" stop="150957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145196" g_stop="145270" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="116" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="169" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="208" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="278" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150653" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="489" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="520"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E718784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145196" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCTTCTTTGCGCCTCTCATTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGG</genome_strand>
        <mrna_strand>TCTTTCTCTTCTTTGCGCCTCTCATTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732416" ref_strand="+" ref_description="SGN-E732416 [LB02AE01]">
      <seq>ctctcattcttggattcactttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatggaggacttgatgttaagagttgtgagcatgtctctataataagctatgtacccaaatcaaatcatatttggtctctgtgcaagttaaatccacaacaaagttcatactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144914" stop="151062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145214" g_stop="145270" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="98" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="151" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="190" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="260" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150751" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="569" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="588"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E732416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145214" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAA</genome_strand>
        <mrna_strand>CTCTCATTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347124" ref_strand="+" ref_description="SGN-E347124 [cTOF-25-A17]">
      <seq>ttcttggattcactttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatggaggacttgatgttaagagttgtgagcatgtctctataataagctatgtacccaaatcaaatcatatttggtctctgtgcaagttaaatccacaacaaagttcatacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144920" stop="151062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145220" g_stop="145270" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="92" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="145" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="184" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="254" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150751" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="563" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="583"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E347124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145220" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAA</genome_strand>
        <mrna_strand>TTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734985" ref_strand="+" ref_description="SGN-E734985 [LB14AE04]">
      <seq>cttggattcactttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatggaggacttgatgttaagagttgtgagcatgtctctataataagctatgtacccaaatcaaatcatatttggtctctgtgcaagttaaatccacaacaaagttcatacttannaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144922" stop="151062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145222" g_stop="145270" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="90" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="143" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="182" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="252" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150764" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="574" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="601"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E734985" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145222" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAAGTTCATACTTATC</genome_strand>
        <mrna_strand>CTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAAGTTCATACTTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281785" ref_strand="+" ref_description="SGN-E281785 [cLER-14-H11]">
      <seq>ttggattcactttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatggaggacttgatgttaagagttgtgagcatgtctctataataagctatgtacccaaatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144923" stop="151018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145223" g_stop="145270" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="89" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="142" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="181" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="251" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150712" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="521" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="533"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E281785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145223" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAA</genome_strand>
        <mrna_strand>TTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301437" ref_strand="+" ref_description="SGN-E301437 [cLEX-8-M2]">
      <seq>actttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttggtgttctcgatacatagtatacatgtctttgacaactggttgtgatggtattatcaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144931" stop="150951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145231" g_stop="145270" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="81" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="134" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="173" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="243" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150651" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="452" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E301437" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145231" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGAT</genome_strand>
        <mrna_strand>ACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGGTGTTCTCGATACATAGTATACATGTCTTTGACAACTGGTTGTGATGGTATTATCAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747544" ref_strand="+" ref_description="SGN-E747544 [GI|5107179]">
      <seq>ctttctggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcatggagaacattaaagaagagattgataatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144932" stop="150867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145232" g_stop="145270" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="80" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="133" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="172" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="242" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150567" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="367" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E747544" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145232" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTC</genome_strand>
        <mrna_strand>CTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCATGGAGAACATTAAAGAAGAGATTGATAATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237943" ref_strand="+" ref_description="SGN-E237943 [cLED-18-G24]">
      <seq>ggggtttcacctaattttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaacagatattctctatggcagagaaagagatggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcatggagaacattaaagaagagattgataatccttctcgttctaaggtccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144938" stop="150883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145238" g_stop="145270" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="74" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="127" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="166" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="236" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150583" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="378" r_length="142" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E237943" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145238" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTCACCTAATTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCT-AGTTCCATA</genome_strand>
        <mrna_strand>GGGGTTTCACCTAATTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCATGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAAGGTCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280280" ref_strand="+" ref_description="SGN-E280280 [cLER-1-E7](-)">
      <seq>ttttccattcttgaaaaggttataatggctggtgttccttctaaccttgaaagagaccagatattctctatggcagagaaagagatggagtatagagtgcagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatggaggacttgatgttaagagttgtgagcatgtctctataataagctatgtacccaaatcaaatcatatttggtctctgtgcaagttaaatccacaacaaagttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="144952" stop="151058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145252" g_stop="145270" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145345" g_stop="145385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="60" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145503" g_stop="145555" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="113" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="152" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="222" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="150443" g_stop="150751" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="531" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="549"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E280280" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145252" e_stop="145270"/>
          <exon e_start="145345" e_stop="145385"/>
          <exon e_start="145503" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCATTCTTGAAAAGGGTATGTAAAGTTCAAATCTTTTTTGGGTTTTCAGTTTATATATGTATGTATCTAATCTCTCTTTACTCTTACAGTTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAGGTTTTTTTTTTTTATTAACTATATGCTATTTATTGCTTCTGTCTTAATGGGGTTTGTTTTTGATCTATTTGTGTTTTCTTGAAACTAAAGTCTTGATTTTTATTTGGGTGAGAGCAGATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAA</genome_strand>
        <mrna_strand>TTTTCCATTCTTGAAAAGG..........................................................................TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGACCAG.....................................................................................................................ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGCAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715748" ref_strand="+" ref_description="SGN-E715748 [FB15AF09]">
      <seq>cgggagtatagagtggagatgtttaacaagcttacgcatacatgcttcaaaaaatgcgtcgagaacaagtacaaggactcggagttgaacatgggtgaaaatagttgtattgaccgatgcgtttcaaagtactggcaggtgactaaccttgtggggacgcttcttgggaacactcgacccatgtaacattttcccattgtctacttcgtggtgttcgaataatctatcagggagaacattaaagaagagattgataatccttctcgttctagttccatatttgttgttctcgatacatagtatacatgtctttgacaactgtttgtgatggtattatcaaatttgatggaggacttgatgttaagagttgtgagcatgtctctataataagctatgtacccaaatcaaatcatatttggtctctgtgcaagttaaatccacaacaaagttcatacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="145229" stop="151062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145527" g_stop="145555" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146758" g_stop="146796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="68" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146904" g_stop="146973" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="138" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="150443" g_stop="150772" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="468" r_length="330" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-E715748" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145527" e_stop="145555"/>
          <exon e_start="146758" e_stop="146796"/>
          <exon e_start="146904" e_stop="146973"/>
          <exon e_start="150443" e_stop="150772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGTATAGAGTGGAGATGTTTAACAAGTAGGTATCTTTTAGCTTTCTTGAATGTTTGGAAGTATACTCATTTGCTTGATTTTGCTCTAGCTAATTGTGTAAAGGATGATTTGTCTATGTGTGGTATTGGTATATTGAAATAAGTAATACCTGGTGTAATCTCACAAATTGGGTCGAGGAAGTAGGAAGGTTGGTGTGTACGCAGCCTTACCCGACCTTGAGAAGGTAGAAAGGTTGTTTTCGACAGACCTTAGTTCAAGTAAAACTTATAAAAATCAAGTATGTAAATAGAATACTGTTGTGAAGTAGTGAAGAATCCATGATTAAAACAATGAGAAGGCAGTGGTAGGAACAACAAATAATATGATAACCTAAGCCAAATGAGATAATAAAGTCAAAGAAAAAGATAGGAGAGTAATTAAAAAAACACTAATAAGGAAACTGGAAACTACACAATGCTCGATTACCTAGTAACCTTCTATCATAATACTCTACCTCCAAATCTTCCTATCTAGGTCCGAGTCCTCCGTATGTTGTAGGTGTGTCATGTCTTATCTCATCATTTCACCTCACTACTTAAATAAGTAAGTACCTGAAAATTATATGCTAATTCTTTGGTGTACACAACTTTTTACTACTAATATGTGTGTTGGGAACTGGGATTTATGATGCCTGTCGTTTTGAACATCAAATGTTCCAGATATAAAGTTAATGAGGAAGACCTGCTGTGAATTGTGTAAACCTTCTTATATAGTTAGAGAGGGGAAAACTTTGCTTATTAATTTGTAAATATTATATACAGTTTTCACATGTGAGTTGTGACCTAATTCTTTTTCTTGGGACAAGTACACAAACATACTTTGTTGACGGATGGTGAGAGCTATGCTGTTTCCACAGTACCTGTTGAGGGAATTGAGTGGGGAATGTTTATACATCTAAAGGCCTAAATTAATCAAAGAGAAGTTCATTCATGAGGCGGTTTACATAATTTGACATTGTAATCAAGTCGCTCAAAAGGTGCCGAAGGAACATTAGAAATGCTAGTTTATAATATATGGTACAAAATTCTTAACATAATGTTTGGAAGTAATTTTTGTCACTGCATAAAGGTAGTGTTATCTGTTTTCTAGTTTTTGTCTTGATTTGCTGGGCTTTAGTTCATATTTCGCATCCTGTCTACTTCTCTGATTTCTTACCAGCTCTTTTTTCCTTTTAAAACTATAATTCAGGCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAAGTATGTTACTCATTCTTCTTATTCTTCTGGCCTAATATATGTTTTGTGCATCATTTTCTCAAGATTTAGTTTCTTGGCTGACAATGCATTTGTAAATGGCTTTACAGGTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAGGTAAGCCATGGCTGTGCGTTCCCACTTCACTAAATCTTGGAGTTAACCTGGTACATGTAAATGTAATAAATACACATATATTTACTTTCAAGTGGTAAAATTATGTTGGTTGCATTAGCCATATCATCTTACTTTGTCTAATGGAAATGGGTTAACCTTTTCTGAACAAATTAAGTAGTTATACTAACTTTGAAGAGACGAGTAATCTTTTCTACTGACAAAATTCTGTGACCTTTGGTAGTTCTCTGGTTTAATCATAATTGTTTTTCCTCTATTCTTCATTTCACATATTATGTTGATGCGTGAAAGATATATTTTAACCAAATTACTTTAATAGAATAGATGACTCACTGCTTAAAGTGGATTAATAGCCTGGGTGGCCAAGCATTTGGGACTTGGGAGACCAGAAGTGCCTGTTTTTAGAAAGTGAAGTGTTTAGCAAGCTTTTAGGAGAAAATCAGTTCTTTTGATGAGTAGCATTAGCTGCTTTTCAGAAGATAAACAATTTAGGAACCTAGTTCATGAAGGTGAAGTGAGGGGTTTCAATGCTTATATAACTTACTACCATGGCTGAATGGAAAGTAGTTGGCAGGTGGTACACTTGGTCAAATGGCCTGGCTTTATAGTAGGATCGATAGGGACCTGTGTATCCAAGTTTACTCATAACTTCTGCCCAAAATGAAGTAGTGGTGATGGACCCAGGGTCCTCTGACCACACACCATTAATTATCACCTTTGACTAAGATAAGACATGACCCTAAACCATTTAGGTTTTTCAATTGCTTTGCTAAGCTCAAAGACTTCCTGCTACTGTCAAAGATGTTTAAGATACTCCAACCAGGTTTGATTATAAGGGGGCTGGCTATGGTAGAAACTGAAGCTGGTGAAACAAGGTCTAAAACACCTTAATCGGAAGGAATTTAATTATGTGGATATCAGAGTCCCTAACAATGCATACAAAGACTAGCTGATGCACAAGCACAAACAAGGGACCATAACCATTCATCTGAACTGTTTAATGAAGAAAATTCACTCAAATTGAGTTTGAGAAGTATAGTATAGTGGAGGAAAGAAAGCATATTAAAACAGAAGTCTAGGACTAAATGGCTGCAACTTGGTGAAGATAACACTGCATATTTCTATGCCACCTTTAAATGCGGATAAGTCCAGAATAGAATTAAATGCCTTGTATATTAGCCAAAGTCAGATCCTGCAACATCCAAATGAATTTGAAGGCGAGATAATGAGAATCTACAAAGATCCAAACATCATGTAAAATGGATTGCAAATCTTGAGAGCAACAATCGGATTTGATTGCCCCTGTCCCAAGGAAGAGGTGTATGCCCTGATGAGTATTGATCATCAGAAGGCCTCTGGTTGTGATGGTTTTAGTGCCCACTTCTTCAAAAGAGCATTGGGGAGGAGGTTAATCGGCAGTAGTAAGTTTCTTTGATCATGGTGACATGCAAAGACCTATACTACATTATTTTTTCAAAAAAATTAAGAAAAAGAGATTGAGACAGATTCACTGACCCAATATATGCCAAAAGGTGCTCTGTTACTGTTCCCATCAGTCAAGTCTACAGTAGATGCATAATATTTCTTTGCCGTTTGAAATTTTTATTATACCAACACCTGTTAAAGTCATGATGTGAGTGATTATTTTATGTCTAGTATTAGAAAAATGCATGCAATGGGGCATTGCTATCGGCGAAGCAAGTTCTGCATAAAATCAGAAAATTAACATGCAATCCAAAACACCCTTATTCTTAAGCATCAGCCAGATGGTCCAGGAGATCACCAAAGTAATATGACTCTTAATCCAAAATATTGAAGCAGATATCAGAAATCCTTTCCATTTTTCATGTGTAAGAAACTTCTTGAAGGTATTTGCAAGCAAAATTACTTCCTAGGTTAACCATTTACCCAGTATCAGCATTTTCATCCTCTTTTTATTTGAGGAAGAGAGTTTTTTTTTTTAGAAAGAAAAAGTAAATAGAATCATTGCCTGACCCATTTATCAGTTGGCTCACTTTGCTTCGCACCACAGCTGCCACCATCCAAGCTCCCTTAATCAGCCCCTCCTCTCCCTTACCGTCCGACATCACTCCATCCTCATCCCACCCAGCCAGTACCAGGCCTTTCTCTTCTGTCCCAACTTGCCTCCAACTTCACCCTCTCCCGTTCTCCATTCAAACAGCCACCCCTTCACAGCAAGTCACTCCCATATCCCACCCCACCAACGCTTCCCTAGAGTCCCATCAAACCTCTCTTGCACTTCATCCAGGCTCCAGCACCCATTCATTCTCCACCTCACTTCCCTCTATTCTTCCTCCTCTGCTTGGTCCCCTCTTTCTGTTACCAATCCTCCCTCAGGACCCTAAAAGTTCCTACTGTTACCATCCTTCCTACTTCCTCTTTTCCTTTTTTTTGTGAGGGTGGGGTGAGGATTGATTTCTTTTCTTCTCCTTTAGATTATTATCTTTTCTTGACAAGGTAAATAGTTTTATCAGTAATCGAGGGAAACCCTATATCCAAGTCATATGCCATAAGGATAACTTTAGGTTTCTCTGAAGCATTCGTGGATCCAATCCACATTTTTTTGCTATCATATCAAAAGACTTTTCGAGTTAGCTTCAAAAATTGACTCCCTCAACTTCTGTAATCAAAGAGGCAGTGGTCTTACACATTTCTCTAACTAGAAGAAAGATACATTTTGTTCAATAACTAGGTCCAAGTAACTGTTCCAAAAAACCCACTTGTTCTTGATATTTTTGTGCCTAAGCAAGTTTGGGTCCCAAGAAGTTGGAATATGAAGCTTATATTTGAGGTTGAAATTAAAGTGAAGAACATATCCACTCTGCGAGCCCCAAGTCTGCATAACGAGAAAATATCTAGAGAATCAGATTGAAGTCCAAAAAATTCTCCTCTCATCATCTCCCTATTTCTGCACATTGATGGCTTTTTTAAAACATCCAGCTATCACGTCAATGTTAATTTCTAGTTAACTTCTGAGTAAGCATAATAATGTGCTCTGACAACTTCCCTTGTATATACTGCTGTTTTTAAGTGTCTCCCTCCCTGCTTCACCAAAATTTTCACTCGAGATTTTAGTGAATGAGGTGATGATAATCTTCTTGAGCCGAGGGTCTAGCAGAAACCACCCCTCTACCCACAAAGGTAGAGGGGTAAGCTCTATGTACACCCTACCTCTCCAGACCACACTTATGGGATTATACTGGGTATTGTTAGTGTTGTTGAGGTGGTGATAATCTTGATATTCATTAAATTTCTGCGCATCTTATTACTGCTAAATGAATTTAGGTAGTTACGGCAGTGTGGTAGTTGCAGTAATATTGGTTTGGTATCTATGCTCCTTTAACTTCAAGATATTTAGTTGAGGTTGTTGTACTTCTTTTTCTTCAAGATCCAACAATAACTAAGCACGCCATTTCAATATTTTCTGCAGGTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAAGTTCATACTTATCATCTCTCA</genome_strand>
        <mrna_strand>CGGGAGTATAGAGTGGAGATGTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA...........................................................................................................GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAAGTTCATACTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279884" ref_strand="+" ref_description="SGN-E279884 [cLER-8-I1]">
      <seq>ttttttttaagtatgaactttgttgtggatttaacttgcacagagaccaaatatgatttgatttgggtacatagcttattatagagacatgctcacaactcttaacatcaagtcctccatcaaatttgataataccatcacaaacagttgtcaaagacatgtatactatgtatcgagaacaacaaatatggaactagaacgagaaggattatcaatctcttctttaatgttctccctgatagattattcgaacaccacgaagtagacaatgggaaaatgttacatgggtcgagtgttcccaagaagcgttcccacaaggttagtcacctgccagtactttgaaacgcatcggtcaatacaactattttcacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="151062" stop="146626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150769" g_stop="150452" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150451" i_stop="149849" i_length="603">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149848" g_stop="149842" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="325" r_length="7" r_score="0.286"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149841" i_stop="146976" i_length="2866">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146975" g_stop="146926" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="375" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E279884" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150769" e_stop="150452"/>
          <exon e_start="149848" e_stop="149842"/>
          <exon e_start="146975" e_stop="146926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATAAGTATGAACTTTGTTGTGGATTTAACTTGCACAGAGACCAAATATGATTTGATTTGGGTACATAGCTTATTATAGAGACATGCTCACAACTCTTAACATCAAGTCCTCCATCAAATTTGATAATACCATCACAAACAGTTGTCAAAGACATGTATACTATGTATCGAGAACAACAAATATGGAACTAGAACGAGAAGGATTATCAATCTCTTCTTTAATGTTCTCCCTGATAGATTATTCGAACACCACGAAGTAGACAATGGGAAAATGTTACATGGGTCGAGTGTTCCCAAGAAGCGTCCCCACAAGGTTAGTCACCTGCAGAAAATATTGAAATGGCGTGCTTAGTTATTGTTGGATCTTGAAGAAAAAGAAGTACAACAACCTCAACTAAATATCTTGAAGTTAAAGGAGCATAGATACCAAACCAATATTACTGCAACTACCACACTGCCGTAACTACCTAAATTCATTTAGCAGTAATAAGATGCGCAGAAATTTAATGAATATCAAGATTATCACCACCTCAACAACACTAACAATACCCAGTATAATCCCATAAGTGTGGTCTGGAGAGGTAGGGTGTACATAGAGCTTACCCCTCTACCTTTGTGGGTAGAGGGGTGGTTTCTGCTAGACCCTCGGCTCAAGAAGATTATCATCACCTCATTCACTAAAATCTCGAGTGAAAATTTTGGTGAAGCAGGGAGGGAGACACTTAAAAACAGCAGTATATACAAGGGAAGTTGTCAGAGCACATTATTATGCTTACTCAGAAGTTAACTAGAAATTAACATTGACGTGATAGCTGGATGTTTTAAAAAAGCCATCAATGTGCAGAAATAGGGAGATGATGAGAGGAGAATTTTTTGGACTTCAATCTGATTCTCTAGATATTTTCTCGTTATGCAGACTTGGGGCTCGCAGAGTGGATATGTTCTTCACTTTAATTTCAACCTCAAATATAAGCTTCATATTCCAACTTCTTGGGACCCAAACTTGCTTAGGCACAAAAATATCAAGAACAAGTGGGTTTTTTGGAACAGTTACTTGGACCTAGTTATTGAACAAAATGTATCTTTCTTCTAGTTAGAGAAATGTGTAAGACCACTGCCTCTTTGATTACAGAAGTTGAGGGAGTCAATTTTTGAAGCTAACTCGAAAAGTCTTTTGATATGATAGCAAAAAAATGTGGATTGGATCCACGAATGCTTCAGAGAAACCTAAAGTTATCCTTATGGCATATGACTTGGATATAGGGTTTCCCTCGATTACTGATAAAACTATTTACCTTGTCAAGAAAAGATAATAATCTAAAGGAGAAGAAAAGAAATCAATCCTCACCCCACCCTCACAAAAAAAAGGAAAAGAGGAAGTAGGAAGGATGGTAACAGTAGGAACTTTTAGGGTCCTGAGGGAGGATTGGTAACAGAAAGAGGGGACCAAGCAGAGGAGGAAGAATAGAGGGAAGTGAGGTGGAGAATGAATGGGTGCTGGAGCCTGGATGAAGTGCAAGAGAGGTTTGATGGGACTCTAGGGAAGCGTTGGTGGGGTGGGATATGGGAGTGACTTGCTGTGAAGGGGTGGCTGTTTGAATGGAGAACGGGAGAGGGTGAAGTTGGAGGCAAGTTGGGACAGAAGAGAAAGGCCTGGTACTGGCTGGGTGGGATGAGGATGGAGTGATGTCGGACGGTAAGGGAGAGGAGGGGCTGATTAAGGGAGCTTGGATGGTGGCAGCTGTGGTGCGAAGCAAAGTGAGCCAACTGATAAATGGGTCAGGCAATGATTCTATTTACTTTTTCTTTCTAAAAAAAAAAACTCTCTTCCTCAAATAAAAAGAGGATGAAAATGCTGATACTGGGTAAATGGTTAACCTAGGAAGTAATTTTGCTTGCAAATACCTTCAAGAAGTTTCTTACACATGAAAAATGGAAAGGATTTCTGATATCTGCTTCAATATTTTGGATTAAGAGTCATATTACTTTGGTGATCTCCTGGACCATCTGGCTGATGCTTAAGAATAAGGGTGTTTTGGATTGCATGTTAATTTTCTGATTTTATGCAGAACTTGCTTCGCCGATAGCAATGCCCCATTGCATGCATTTTTCTAATACTAGACATAAAATAATCACTCACATCATGACTTTAACAGGTGTTGGTATAATAAAAATTTCAAACGGCAAAGAAATATTATGCATCTACTGTAGACTTGACTGATGGGAACAGTAACAGAGCACCTTTTGGCATATATTGGGTCAGTGAATCTGTCTCAATCTCTTTTTCTTAATTTTTTTGAAAAAATAATGTAGTATAGGTCTTTGCATGTCACCATGATCAAAGAAACTTACTACTGCCGATTAACCTCCTCCCCAATGCTCTTTTGAAGAAGTGGGCACTAAAACCATCACAACCAGAGGCCTTCTGATGATCAATACTCATCAGGGCATACACCTCTTCCTTGGGACAGGGGCAATCAAATCCGATTGTTGCTCTCAAGATTTGCAATCCATTTTACATGATGTTTGGATCTTTGTAGATTCTCATTATCTCGCCTTCAAATTCATTTGGATGTTGCAGGATCTGACTTTGGCTAATATACAAGGCATTTAATTCTATTCTGGACTTATCCGCATTTAAAGGTGGCATAGAAATATGCAGTGTTATCTTCACCAAGTTGCAGCCATTTAGTCCTAGACTTCTGTTTTAATATGCTTTCTTTCCTCCACTATACTATACTTCTCAAACTCAATTTGAGTGAATTTTCTTCATTAAACAGTTCAGATGAATGGTTATGGTCCCTTGTTTGTGCTTGTGCATCAGCTAGTCTTTGTATGCATTGTTAGGGACTCTGATATCCACATAATTAAATTCCTTCCGATTAAGGTGTTTTAGACCTTGTTTCACCAGCTTCAGTTTCTACCATAGCCAGCCCCCTTATAATCAAACCTGGTTGGAGTATCTTAAACATCTTTGACAGTAGCAGGAAGTCTTTGAGCTTAGCAAAGCAATTGAAAAACCTAAATGGTTTAGGGTCATGTCTTATCTTAGTCAAAGGTGATAATTAATGGTGTGTGGTCAGAGGACCCTGGGTCCATCACCACTACTTCATTTTGGGCAGAAGTTATGAGTAAACTTGGATACACAGGTCCCTATCGATCCTACTATAAAGCCAGGCCATTTGACCAAGTGTACCACCTGCCAACTACTTTCCATTCAGCCATGGTAGTAAGTTATATAAGCATTGAAACCCCTCACTTCACCTTCATGAACTAGGTTCCTAAATTGTTTATCTTCTGAAAAGCAGCTAATGCTACTCATCAAAAGAACTGATTTTCTCCTAAAAGCTTGCTAAACACTTCACTTTCTAAAAACAGGCACTTCTGGTCTCCCAAGTCCCAAATGCTTGGCCACCCAGGCTATTAATCCACTTTAAGCAGTGAGTCATCTATTCTATTAAAGTAATTTGGTTAAAATATATCTTTCACGCATCAACATAATATGTGAAATGAAGAATAGAGGAAAAACAATTATGATTAAACCAGAGAACTACCAAAGGTCACAGAATTTTGTCAGTAGAAAAGATTACTCGTCTCTTCAAAGTTAGTATAACTACTTAATTTGTTCAGAAAAGGTTAACCCATTTCCATTAGACAAAGTAAGATGATATGGCTAATGCAACCAACATAATTTTACCACTTGAAAGTAAATATATGTGTATTTATTACATTTACATGTACCAGGTTAACTCCAAGATTTAGTGAAGTGGGAACGCACAGCCATGGCTTACCTGCCAGTACTTTGAAACGCATCGGTCAATACAACTATTTTCACCCAT</genome_strand>
        <mrna_strand>TTTTTTTTAAGTATGAACTTTGTTGTGGATTTAACTTGCACAGAGACCAAATATGATTTGATTTGGGTACATAGCTTATTATAGAGACATGCTCACAACTCTTAACATCAAGTCCTCCATCAAATTTGATAATACCATCACAAACAGTTGTCAAAGACATGTATACTATGTATCGAGAACAACAAATATGGAACTAGAACGAGAAGGATTATCAATCTCTTCTTTAATGTTCTCCCTGATAGATTATTCGAACACCACGAAGTAGACAATGGGAAAATGTTACATGGGTCGAGTGTTCCCAAGAAGCGTTCCCACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGCCAGTACTTTGAAACGCATCGGTCAATACAACTATTTTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377543" ref_strand="+" ref_description="SGN-E377543 [TUS-20-D19]">
      <seq>tagaatcttattcgatcaggatggtaatcctagactctcttgctttggcttgatgaagaacagtagagacgggaagagttatagtacaaacttggctttcactcccccagagtacttgaaaacaggaagagtgacccctgaaagtgtagtttacagctttggaacaatgttgctagatcttttgagtggaaagcatattcctccaagccatgcacttgatctaattcgagggaagaattttttgatgcttatggattcttgtttggagggtcatttttcaaatgatgatggaagtgagcttgttcggctagccactcgttgtttacaatatgaggcacgtgagaggccaaatgcaaaatctctcgtcacttcacttatgtctcttcagaaagaaacagaggtgccatcacatgttttgttgggtattccacatggaactgaaaccccacctcagccattattattgactccaatgggtgaagcatgcttgagaaaggatcttactgcccttcatgaaatattggaaaagagtgggtacaaggatgatgaaggaattgccaatgagctttcgtttcaaatgtggacaaatcagatgcaggaaaccttgaattctaagaagcatggtgatgctgctttccgagccaaggatttcattactgctattgactgctacacacagttcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="154217" stop="151252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153917" g_stop="153899" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="153898" i_stop="153815" i_length="84">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="153814" g_stop="153709" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="125" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="153708" i_stop="153518" i_length="191">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="153517" g_stop="153432" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="211" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="153431" i_stop="153301" i_length="131">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="153300" g_stop="153112" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="400" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="153111" i_stop="152744" i_length="368">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="152743" g_stop="152579" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="565" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="152578" i_stop="151669" i_length="910">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="151668" g_stop="151555" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="679" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="151554" i_stop="151361" i_length="194">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="151360" g_stop="151351" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="689" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E377543" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153917" e_stop="153899"/>
          <exon e_start="153814" e_stop="153709"/>
          <exon e_start="153517" e_stop="153432"/>
          <exon e_start="153300" e_stop="153112"/>
          <exon e_start="152743" e_stop="152579"/>
          <exon e_start="151668" e_stop="151555"/>
          <exon e_start="151360" e_stop="151351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCTTATTCGATCAGGTAAATATTGATTCTACTGCAATTTTTGTTATAACTAGGTTGTGTTAGGTGTAGTGCGCCTTACATTGGTTAGCTTTTTCGCAGGATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAGGTCAAATATGATTTTTTTGTCAATCCAAAGTGTTGTGAGATGGAATTTTGTTGTTCACCGCAAAGCTTTAGTATCAAGAAAGATCTGCTTAAATAATTTACCAATAAGTTCAGGCATTTCTTTAAGTATTATGCTACTGTCTTTTCCTTAATTCAGCATAAGTGAAGTTGAAATGTGTTAATGATTGGCAGGAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCATGTAAGTTGCAAAAGATTTTGGACCTAAGGATGTGCACTATATGAAATCCTGTATAAATTGAACTTTGTTTATCGACTCTATTACTTGAGTTCCTGAACTTGAAGAGCACGGTTTCTTCTACCTTCTCGTAGGCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAGGTATGCCTATGCCCCTTGACTTACATACAGATCACAAAAACATTTAAAGAACTGCTTCTAACCTTCTTTCATTTGTGAGATCAAAAATTGATCAATGCCAAACAGATAAACACCTTCTTTTTACATTGTGTTATTTGGTTGTCTAGGAACACACTATAGTAAGGTTGATTATGTTACTATAGTGTGGATATATCCCATGTCTTTTGCTATCTCATATTTTCTATTTAGTTAACAACGGAAACTGAAACCTTCAAGGGAACATATTATATTTTAATTGCTATGTATTCTTCAGATGAATCACCTTGGTTTCTCCTTAATTTTGTTTTATATAATGCTTGGAGCCCATGTTTGCCATTGATATAATCCAGGTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAGGTCTTCCTTTTCTTTACTCAATTTAACTATTTCATTAGCAGCTTTGTTTCTTAAAAATATATAAAAGAAGATGTTTTCTGGCTTAGATATTCTTTTCACAACCTAATACAATTAACCCTCTCTTTAGCACCTTGGATGAATGACATGTTTCTACTCCCTCTCCTTTTTAGTCGGTTTAAAAAAGATTTGATTTTTTTCCATTTCTGTGAACACTTTAATTTCAACTTTCCGTGTGATATGTTTAAGACCACACGATTAAAGGACATTTTTGGTACGTTCTGCCCATGTTTGGTTAAGACCACAAGTTTCAAAAGTCTTTTTTGTTCTCTTAAACTCCGTTCCAAGTCAAAACCTGTCAAACAAATTGAAACGGAGGGAGAATTTCCATAATAGTTTCTTATCATGGTATTCTTGATAAGGAACCACTTTTAAAAGGTTAATTTTAGATGCAGAAGATTTACCTCCTGCCCAAAAGAAGATCTAAGATAATAATACCTCATTGAGAGAGGTAAGTAAGATGTTAATGATCCAACTTTAATATCATGCTTTTGTTCCTCTAATTATTACCAAAAAGAGAGTCCACTATGTTTTGCCTTTTAAAATTTACTTACTCTGTTTCTTTTTCCATCAATTAGCAAAGGGCCTACCTGGTGTCATCATCTAAGCCCATGTGGTATCCTTTCAGTAAAAGTCTTAGATCTTCTGTCTGTTGATTGTCAAACAAAAGGATTACAATAAACCAATATAAGATATCTTAACATTTTGTGATAATTTACAAGTTCAGTATTATACTGTTTGTTTGTTATATGTGTTTTCATCTTCATATCTCAATTGCCCCACAACTAAATCATGTCTTATTTTTATTGGTATGACTTGATCTTGATTTTGTTATTTTGCGATTCCATTACAGCTTTCGTTCCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACACAGGTTTGACCATAGCAAATATGTTTGTTTATGTTAATGGCTAAAATGCGGATGCTTTTATCATAGTCGTAAAACAATTGCAGCAAGACTTGATTAAATTCCTCAGTAAAAGCTCAAAATGAAAAATGTCTCTTAAAAGTATTCAGCTATTTGAACAAGACAAGGCAGACTTACATGTTTTTCTGTTTAATATATAGTTCATTGATG</genome_strand>
        <mrna_strand>TAGAATCTTATTCGATCAG....................................................................................GATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAG...............................................................................................................................................................................................GAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCAT...................................................................................................................................GCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAG................................................................................................................................................................................................................................................................................................................................................................................GTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGTTTCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACACAG..................................................................................................................................................................................................TTCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305904" ref_strand="+" ref_description="SGN-E305904 [cLEY-17-N15]">
      <seq>ttggaacaatgttgctagatcttttgagtggaaagcatattcctccaagccatgcacttgatctaattcgagggaagaattttttgatgcttatggattcttgtttggagggtcatttttcaaatgatgatggaagtgagcttgttcggctagccactcgttgtttacaatatgaggcacgtgagaggccaaatgcaaaatctctcgtcacttcacttatgtctcttcagaaagaaacagaggtgccatcacatgttttgttgggtattccacatggaactgaaaccccacctcagccattattattgactccaatgggtgaagcatgcttgagaaaggatcttactgcccttcatgaaatattggaaaagagtgggtacaaggatgatgaaggaattgccaatgagctttcgttccaaatgtggacaaatcagatgcaggaaaccttgaattctaagaagcatggtgatgctgctttccgagccaaggatttcattactgctattgactgctacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="153784" stop="151257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153484" g_stop="153432" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="153431" i_stop="153301" i_length="131">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="153300" g_stop="153112" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="242" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="153111" i_stop="152744" i_length="368">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="152743" g_stop="152579" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="407" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="152578" i_stop="151669" i_length="910">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="151668" g_stop="151557" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="519" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E305904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153484" e_stop="153432"/>
          <exon e_start="153300" e_stop="153112"/>
          <exon e_start="152743" e_stop="152579"/>
          <exon e_start="151668" e_stop="151557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCATGTAAGTTGCAAAAGATTTTGGACCTAAGGATGTGCACTATATGAAATCCTGTATAAATTGAACTTTGTTTATCGACTCTATTACTTGAGTTCCTGAACTTGAAGAGCACGGTTTCTTCTACCTTCTCGTAGGCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAGGTATGCCTATGCCCCTTGACTTACATACAGATCACAAAAACATTTAAAGAACTGCTTCTAACCTTCTTTCATTTGTGAGATCAAAAATTGATCAATGCCAAACAGATAAACACCTTCTTTTTACATTGTGTTATTTGGTTGTCTAGGAACACACTATAGTAAGGTTGATTATGTTACTATAGTGTGGATATATCCCATGTCTTTTGCTATCTCATATTTTCTATTTAGTTAACAACGGAAACTGAAACCTTCAAGGGAACATATTATATTTTAATTGCTATGTATTCTTCAGATGAATCACCTTGGTTTCTCCTTAATTTTGTTTTATATAATGCTTGGAGCCCATGTTTGCCATTGATATAATCCAGGTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAGGTCTTCCTTTTCTTTACTCAATTTAACTATTTCATTAGCAGCTTTGTTTCTTAAAAATATATAAAAGAAGATGTTTTCTGGCTTAGATATTCTTTTCACAACCTAATACAATTAACCCTCTCTTTAGCACCTTGGATGAATGACATGTTTCTACTCCCTCTCCTTTTTAGTCGGTTTAAAAAAGATTTGATTTTTTTCCATTTCTGTGAACACTTTAATTTCAACTTTCCGTGTGATATGTTTAAGACCACACGATTAAAGGACATTTTTGGTACGTTCTGCCCATGTTTGGTTAAGACCACAAGTTTCAAAAGTCTTTTTTGTTCTCTTAAACTCCGTTCCAAGTCAAAACCTGTCAAACAAATTGAAACGGAGGGAGAATTTCCATAATAGTTTCTTATCATGGTATTCTTGATAAGGAACCACTTTTAAAAGGTTAATTTTAGATGCAGAAGATTTACCTCCTGCCCAAAAGAAGATCTAAGATAATAATACCTCATTGAGAGAGGTAAGTAAGATGTTAATGATCCAACTTTAATATCATGCTTTTGTTCCTCTAATTATTACCAAAAAGAGAGTCCACTATGTTTTGCCTTTTAAAATTTACTTACTCTGTTTCTTTTTCCATCAATTAGCAAAGGGCCTACCTGGTGTCATCATCTAAGCCCATGTGGTATCCTTTCAGTAAAAGTCTTAGATCTTCTGTCTGTTGATTGTCAAACAAAAGGATTACAATAAACCAATATAAGATATCTTAACATTTTGTGATAATTTACAAGTTCAGTATTATACTGTTTGTTTGTTATATGTGTTTTCATCTTCATATCTCAATTGCCCCACAACTAAATCATGTCTTATTTTTATTGGTATGACTTGATCTTGATTTTGTTATTTTGCGATTCCATTACAGCTTTCGTTCCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACAC</genome_strand>
        <mrna_strand>TTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCAT...................................................................................................................................GCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAG................................................................................................................................................................................................................................................................................................................................................................................GTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGTTCCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232946" ref_strand="+" ref_description="SGN-E232946 [cLED-6-I19]">
      <seq>tagaatcttattcgatcaggatggtaatcctagactctcttgctttggcttgatgaagaacagtagagacgggaagagttatagtacaaacttggctttcactcccccagagtacttgaaaacaggaagagtgacccctgaaagtgtagtttacagctttggaacaatgttgctagatcttttgagtggaaagcatattcctccaagccatgcacttgatctaattcgagggaagaattttttgatgcttatggattcttgtttggagggtcatttttcaaatgatgatggaagtgagcttgttcggctagccactcgttgtttacaatatgaggcacgtgagaggccaaatgcaaaatctctcgtcacttcacttatgtctcttcagaaagaaacagaggtgccatcacatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026P14-G3fM4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 upload_account_name:spain">
        <position start="154217" stop="152810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153917" g_stop="153899" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="153898" i_stop="153815" i_length="84">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="153814" g_stop="153709" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="125" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="153708" i_stop="153518" i_length="191">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="153517" g_stop="153432" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="211" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="153431" i_stop="153301" i_length="131">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="153300" g_stop="153112" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="400" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-E232946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153917" e_stop="153899"/>
          <exon e_start="153814" e_stop="153709"/>
          <exon e_start="153517" e_stop="153432"/>
          <exon e_start="153300" e_stop="153112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCTTATTCGATCAGGTAAATATTGATTCTACTGCAATTTTTGTTATAACTAGGTTGTGTTAGGTGTAGTGCGCCTTACATTGGTTAGCTTTTTCGCAGGATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAGGTCAAATATGATTTTTTTGTCAATCCAAAGTGTTGTGAGATGGAATTTTGTTGTTCACCGCAAAGCTTTAGTATCAAGAAAGATCTGCTTAAATAATTTACCAATAAGTTCAGGCATTTCTTTAAGTATTATGCTACTGTCTTTTCCTTAATTCAGCATAAGTGAAGTTGAAATGTGTTAATGATTGGCAGGAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCATGTAAGTTGCAAAAGATTTTGGACCTAAGGATGTGCACTATATGAAATCCTGTATAAATTGAACTTTGTTTATCGACTCTATTACTTGAGTTCCTGAACTTGAAGAGCACGGTTTCTTCTACCTTCTCGTAGGCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAG</genome_strand>
        <mrna_strand>TAGAATCTTATTCGATCAG....................................................................................GATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAG...............................................................................................................................................................................................GAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCAT...................................................................................................................................GCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>168</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2328" PGL_stop="8601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2328" e_stop="2378"/>
            <exon e_start="2601" e_stop="2647"/>
            <exon e_start="4431" e_stop="4593"/>
            <exon e_start="4716" e_stop="4853"/>
            <exon e_start="4985" e_stop="5107"/>
            <exon e_start="5212" e_stop="5310"/>
            <exon e_start="5676" e_stop="5765"/>
            <exon e_start="6074" e_stop="6155"/>
            <exon e_start="7519" e_stop="7649"/>
            <exon e_start="7801" e_stop="8256"/>
            <exon e_start="8578" e_stop="8601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.091" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.261" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2328" e_stop="2378" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.091" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2379" i_stop="2600" i_length="222"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2601" e_stop="2647" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="2648" i_stop="4430" i_length="1783"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4431" e_stop="4593" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.622" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4594" i_stop="4715" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4716" e_stop="4853" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4854" i_stop="4984" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4985" e_stop="5107" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.972">
            <gDNA_intron_boundary i_start="5108" i_stop="5211" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5212" e_stop="5310" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="5311" i_stop="5675" i_length="365"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5676" e_stop="5765" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.741" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5766" i_stop="6073" i_length="308"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6074" e_stop="6155" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.261" acc_prob="0.968">
            <gDNA_intron_boundary i_start="6156" i_stop="7518" i_length="1363"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="7519" e_stop="7649" e_length="131"/>
          </exon>
          <intron i_serial="9" don_prob="0.874" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7650" i_stop="7800" i_length="151"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7801" e_stop="8256" e_length="456"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8257" i_stop="8577" i_length="321"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="8578" e_stop="8601" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2328" stop="2378"/>
              <exon start="2601" stop="2647"/>
              <exon start="4431" stop="4593"/>
              <exon start="4716" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2341" stop="2378"/>
              <exon start="2601" stop="2647"/>
              <exon start="4431" stop="4593"/>
              <exon start="4716" stop="4801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2610" stop="2647"/>
              <exon start="4431" stop="4593"/>
              <exon start="4716" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4506" stop="4593"/>
              <exon start="4716" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5310"/>
              <exon start="5676" stop="5765"/>
              <exon start="6074" stop="6155"/>
              <exon start="7519" stop="7590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4844" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5310"/>
              <exon start="5676" stop="5765"/>
              <exon start="6074" stop="6155"/>
              <exon start="7519" stop="7557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4844" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5310"/>
              <exon start="5676" stop="5697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5746" stop="5765"/>
              <exon start="6074" stop="6155"/>
              <exon start="7519" stop="7649"/>
              <exon start="7801" stop="8036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7611" stop="7649"/>
              <exon start="7801" stop="8256"/>
              <exon start="8578" stop="8601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7611" stop="7649"/>
              <exon start="7801" stop="8256"/>
              <exon start="8578" stop="8601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG : GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG : GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA : GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG : CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG : GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG : GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG : GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG : ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG : GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATCA : TCAAAAAAACAAACTGAAAACTAA</gDNA_template>
            <first_frame> Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  :  G  R  G  P  Q  F  P  G  S  H  P  V  S  L  D  R :   E  N  L  Q  L  L  R  Q  R  Y  Y  Y  A  T  W  K  A  D  G  T  R  Y  M  M  L  I  T  M  D  G  C  F  L  I  D  R  H  F  N  F  R  R  V  Q  M  R  F  P  C  R  H  T  N  E  :  G  L  A  E  K  T  H  H  F  T  L  L  D  G  E  M  V  I  D  T  L  P  D  T  Q  K  Q  E  R  R  Y  L  I  Y  D  M  I  A  L  N  Q  L  S  V  I  E  :  R  P  F  Y  E  R  W  R  M  I  D  K  E  V  I  G  P  R  N  Y  E  R  Q  H  I  Y  Q  S  R  N  P  Y  Y  R  Y  E  L  E  P  F  R  :  V  R  R  K  D  F  F  L  L  S  T  V  T  K  L  L  K  E  F  I  P  K  L  S  H  E  A  D  G  L  I  F  Q  :  G  W  D  D  P  Y  V  P  R  T  H  E  G  L  L  K  W  K  Y  P  E  M  N  S  V  D  F  L  F  E  :  V  V  D  D  R  E  L  L  Y  L  H  E  R  G  K  K  K  L  M  E  G  S  R  V  V  F  P   : D  G  S  D  P  S  A  Y  S  G  K  I  I  E  C  S  F  D  T  D  D  Q  K  W  I  W  M  R  T  R  V  D  K  G  T  P  N  D  Y  N  T  Y  R  K  :  V  M  R  S  I  T  D  N  I  T  E  E  V  L  L  N  E  I  Y  E  I  I  R  L  P  M  Y  A  D  R  I  Q  S  D  S  K  A  H  V  R  R  R  *  M  N  *  C  L  A  V  F  I  *  Y  H  *  K  G  M  Y  K  Q  P  *  F  L  G  V  F  C  V  L  Y  W  V  C  Y  M  D  P  V  G  T  L  *  T  *  W  S  M  T  R  A  L  C  F  F  F  V  S  D  E  V  V  L  Y  I  I  V  V  L  V  H  F  F  F  T  W  L  L  L  C  C  L  R  *  V  L  N  F  Q  A  L  C  D  L  F  P  C  E  Y  K  I  V  L  L  V  I  S  S  L  S  :  S  K  K  Q  T  E  N  * </first_frame>
            <second_frame>  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G :   V  E  A  H  N  F  L  A  H  I  Q  S  L  L  T   : G  K  T  C  S  Y  *  G  S  V  T  T  M  P  L  G  R  L  M  G  H  G  I  *  C  *  S  R  W  M  V  V  S  *  L  I  G  I  S  T  F  G  G  F  R  *  D  F  L  A  D  T  L  M  K :   V  *  P  K  R  P  T  T  S  L  Y  L  M  E  R  W  *  L  I  L  C  L  T  H  R  S  R  K  G  D  T  *  F  M  I  *  L  L  *  T  N  C  L  S  L  S :   D  P  F  M  N  G  G  E  *  S  T  K  K  *  L  V  Q  G  I  M  N  V  N  I  Y  T  R  V  E  T  L  I  I  D  M  S  W  S  L  S  G :   *  G  G  R  I  F  F  C  S  L  L  S  R  N  F  S  K  N  L  S  Q  S  F  H  M  K  L  M  V  L  F  F  R :   V  G  M  I  L  M  F  L  V  R  M  R  V  S  *  S  G  N  T  L  K  *  T  R  S  T  F  S  L  R :   W  L  T  I  V  N  C  F  I  Y  M  N  E  G  R  R  N  *  W  R  G  V  E  L  F  S  Q  :  M  V  L  I  H  Q  L  T  P  V  K  *  *  S  A  L  L  T  L  M  T  K  N  G  Y  G  *  G  P  E  S  T  K  E  L  R  M  T  T  I  R  T  E  R :   *  *  E  V  L  P  T  T  S  L  K  K  C  C  *  M  R  F  M  R  S  F  D  C  Q  C  M  R  I  G  Y  R  V  I  A  K  L  M  Y  D  A  D  E  *  I  D  A  *  L  C  S  S  N  I  I  R  R  A  C  T  S  S  L  S  S  *  A  C  F  V  C  Y  T  G  F  V  I  W  I  Q  L  A  H  C  K  L  S  G  P  *  L  G  P  C  V  F  S  S  L  A  M  R  L  S  C  I  L  *  L  F  *  F  T  F  F  L  P  G  Y  C  Y  V  V  *  G  R  F  *  T  F  K  L  Y  A  I  Y  S  L  V  N  T  K  L  F  Y  *  L  F  L  V  Y  H :   Q  K  N  K  L  K  T   </second_frame>
            <third_frame>   K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R   : G  *  R  P  T  I  S  W  L  T  S  S  L  S  *  Q  :  G  K  L  A  V  I  K  A  A  L  L  L  C  H  L  E  G  *  W  D  T  V  Y  D  A  D  H  D  G  W  L  F  L  N  *  *  A  F  Q  L  S  E  G  S  D  E  I  S  L  Q  T  H  *  *   : R  F  S  R  K  D  P  P  L  H  F  T  *  W  R  D  G  N  *  Y  F  A  *  H  T  E  A  G  K  E  I  P  N  L  *  Y  D  C  F  E  P  I  V  C  H  *   : A  T  L  L  *  T  V  E  N  D  R  Q  R  S  D  W  S  K  E  L  *  T  S  T  Y  I  P  E  *  K  P  L  L  *  I  *  V  G  A  F  Q   : G  E  E  E  G  F  F  S  A  L  Y  C  H  E  T  S  Q  R  I  Y  P  K  A  F  T  *  S  *  W  S  Y  F  S   : G  L  G  *  S  L  C  S  S  Y  A  *  G  S  L  E  V  E  I  P  *  N  E  L  G  R  L  S  L  *   : G  G  *  R  S  *  I  A  L  S  T  *  T  R  E  E  E  T  N  G  G  E  *  S  C  F  P  R :   W  F  *  S  I  S  L  L  R  *  N  N  R  V  L  F  *  H  *  *  P  K  M  D  M  D  E  D  Q  S  R  Q  R  N  S  E  *  L  Q  Y  V  Q  K   : G  D  E  K  Y  Y  R  Q  H  H  *  R  S  V  V  E  *  D  L  *  D  H  S  T  A  N  V  C  G  *  D  T  E  *  *  Q  S  S  C  T  T  Q  M  N  E  L  M  L  S  C  V  H  L  I  S  L  E  G  H  V  Q  A  A  L  V  P  R  R  V  L  C  A  I  L  G  L  L  Y  G  S  S  W  H  T  V  N  L  V  V  H  D  S  G  L  V  F  F  L  R  *  R  *  G  C  L  V  Y  Y  S  C  F  S  S  L  F  F  Y  L  V  T  V  M  L  S  K  V  G  F  K  L  S  S  S  M  R  S  I  P  L  *  I  Q  N  C  S  T  S  Y  F  *  F  I   : I  K  K  T  N  *  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2328" stop="2378"/>
                    <exon start="2601" stop="2647"/>
                    <exon start="4431" stop="4593"/>
                    <exon start="4716" stop="4853"/>
                    <exon start="4985" stop="5107"/>
                    <exon start="5212" stop="5310"/>
                    <exon start="5676" stop="5765"/>
                    <exon start="6074" stop="6155"/>
                    <exon start="7519" stop="7649"/>
                    <exon start="7801" stop="7929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNHLRQFCYQALKMTPGGRGPQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRHFNFRRVQMRFPCRHTNEGLAEKTHHFTLLDGEMVIDTLPDTQKQERRYLIYDMIALNQLSVIERPFYERWRMIDKEVIGPRNYERQHIYQSRNPYYRYELEPFRVRRKDFFLLSTVTKLLKEFIPKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVVDDRELLYLHERGKKKLMEGSRVVFPDGSDPSAYSGKIIECSFDTDDQKWIWMRTRVDKGTPNDYNTYRKVMRSITDNITEEVLLNEIYEIIRLPMYADRIQSDSKAHVRRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7905" stop="8099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSCTTQMNELMLSCVHLISLEGHVQAALVPRRVLCAILGLLYGSSWHTVNLVVHDSGLVFFLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2328" e_stop="2378"/>
            <exon e_start="2601" e_stop="2647"/>
            <exon e_start="4431" e_stop="4593"/>
            <exon e_start="4716" e_stop="4853"/>
            <exon e_start="4985" e_stop="5107"/>
            <exon e_start="5212" e_stop="5310"/>
            <exon e_start="5676" e_stop="5765"/>
            <exon e_start="6074" e_stop="6379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.091" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.834" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.998" e_score="0.989"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2328" e_stop="2378" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.091" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2379" i_stop="2600" i_length="222"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2601" e_stop="2647" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="2648" i_stop="4430" i_length="1783"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4431" e_stop="4593" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.622" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4594" i_stop="4715" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="4716" e_stop="4853" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4854" i_stop="4984" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4985" e_stop="5107" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.972">
            <gDNA_intron_boundary i_start="5108" i_stop="5211" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5212" e_stop="5310" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="5311" i_stop="5675" i_length="365"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="5676" e_stop="5765" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.741" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5766" i_stop="6073" i_length="308"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="6074" e_stop="6379" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2328" stop="2378"/>
              <exon start="2601" stop="2647"/>
              <exon start="4431" stop="4593"/>
              <exon start="4716" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2341" stop="2378"/>
              <exon start="2601" stop="2647"/>
              <exon start="4431" stop="4593"/>
              <exon start="4716" stop="4801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2610" stop="2647"/>
              <exon start="4431" stop="4593"/>
              <exon start="4716" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4844" stop="4853"/>
              <exon start="4985" stop="5107"/>
              <exon start="5212" stop="5310"/>
              <exon start="5676" stop="5697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5224" stop="5310"/>
              <exon start="5676" stop="5765"/>
              <exon start="6074" stop="6379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG : GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG : GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA : GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG : CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG : GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG : GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG : GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGA</gDNA_template>
            <first_frame> Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  :  G  R  G  P  Q  F  P  G  S  H  P  V  S  L  D  R :   E  N  L  Q  L  L  R  Q  R  Y  Y  Y  A  T  W  K  A  D  G  T  R  Y  M  M  L  I  T  M  D  G  C  F  L  I  D  R  H  F  N  F  R  R  V  Q  M  R  F  P  C  R  H  T  N  E  :  G  L  A  E  K  T  H  H  F  T  L  L  D  G  E  M  V  I  D  T  L  P  D  T  Q  K  Q  E  R  R  Y  L  I  Y  D  M  I  A  L  N  Q  L  S  V  I  E  :  R  P  F  Y  E  R  W  R  M  I  D  K  E  V  I  G  P  R  N  Y  E  R  Q  H  I  Y  Q  S  R  N  P  Y  Y  R  Y  E  L  E  P  F  R  :  V  R  R  K  D  F  F  L  L  S  T  V  T  K  L  L  K  E  F  I  P  K  L  S  H  E  A  D  G  L  I  F  Q  :  G  W  D  D  P  Y  V  P  R  T  H  E  G  L  L  K  W  K  Y  P  E  M  N  S  V  D  F  L  F  E  :  V  V  D  D  R  E  L  L  Y  L  H  E  R  G  K  K  K  L  M  E  G  S  R  V  V  F  P  G  Q  K  S  P  V  I  S  V  V  Y  L  R  C  H  E  G  M  F  P  L  I  G  V  *  L  G  I  *  E  T  N  I  I  H  S  P  H  S  L  I  L  S  F  W  N  C  E  L  V  K  I  L  L  L  S  C  I  L  T  E  P  G  G  C  F  F  L  I  K  F  Y  C  G  G </first_frame>
            <second_frame>  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G :   V  E  A  H  N  F  L  A  H  I  Q  S  L  L  T   : G  K  T  C  S  Y  *  G  S  V  T  T  M  P  L  G  R  L  M  G  H  G  I  *  C  *  S  R  W  M  V  V  S  *  L  I  G  I  S  T  F  G  G  F  R  *  D  F  L  A  D  T  L  M  K :   V  *  P  K  R  P  T  T  S  L  Y  L  M  E  R  W  *  L  I  L  C  L  T  H  R  S  R  K  G  D  T  *  F  M  I  *  L  L  *  T  N  C  L  S  L  S :   D  P  F  M  N  G  G  E  *  S  T  K  K  *  L  V  Q  G  I  M  N  V  N  I  Y  T  R  V  E  T  L  I  I  D  M  S  W  S  L  S  G :   *  G  G  R  I  F  F  C  S  L  L  S  R  N  F  S  K  N  L  S  Q  S  F  H  M  K  L  M  V  L  F  F  R :   V  G  M  I  L  M  F  L  V  R  M  R  V  S  *  S  G  N  T  L  K  *  T  R  S  T  F  S  L  R :   W  L  T  I  V  N  C  F  I  Y  M  N  E  G  R  R  N  *  W  R  G  V  E  L  F  S  Q  V  R  N  P  Q  L  Y  Q  L  Y  T  *  G  V  M  K  E  C  F  P  *  L  G  F  S  W  E  Y  K  R  L  I  S  S  T  V  H  T  H  *  F  Y  L  F  G  T  V  N  S  L  R  F  Y  C  C  L  V  Y  L  L  S  R  V  D  V  F  S  *  *  N  F  I  V  G   </second_frame>
            <third_frame>   K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R   : G  *  R  P  T  I  S  W  L  T  S  S  L  S  *  Q  :  G  K  L  A  V  I  K  A  A  L  L  L  C  H  L  E  G  *  W  D  T  V  Y  D  A  D  H  D  G  W  L  F  L  N  *  *  A  F  Q  L  S  E  G  S  D  E  I  S  L  Q  T  H  *  *   : R  F  S  R  K  D  P  P  L  H  F  T  *  W  R  D  G  N  *  Y  F  A  *  H  T  E  A  G  K  E  I  P  N  L  *  Y  D  C  F  E  P  I  V  C  H  *   : A  T  L  L  *  T  V  E  N  D  R  Q  R  S  D  W  S  K  E  L  *  T  S  T  Y  I  P  E  *  K  P  L  L  *  I  *  V  G  A  F  Q   : G  E  E  E  G  F  F  S  A  L  Y  C  H  E  T  S  Q  R  I  Y  P  K  A  F  T  *  S  *  W  S  Y  F  S   : G  L  G  *  S  L  C  S  S  Y  A  *  G  S  L  E  V  E  I  P  *  N  E  L  G  R  L  S  L  *   : G  G  *  R  S  *  I  A  L  S  T  *  T  R  E  E  E  T  N  G  G  E  *  S  C  F  P  R  S  E  I  P  S  Y  I  S  C  I  L  E  V  S  *  R  N  V  S  L  N  W  G  L  V  G  N  I  R  D  *  Y  H  P  Q  S  T  L  I  N  F  I  F  L  E  L  *  T  R  *  D  F  I  A  V  L  Y  T  Y  *  A  G  W  M  F  F  L  N  K  I  L  L  W  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2328" stop="2378"/>
                    <exon start="2601" stop="2647"/>
                    <exon start="4431" stop="4593"/>
                    <exon start="4716" stop="4853"/>
                    <exon start="4985" stop="5107"/>
                    <exon start="5212" stop="5310"/>
                    <exon start="5676" stop="5765"/>
                    <exon start="6074" stop="6229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNHLRQFCYQALKMTPGGRGPQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRHFNFRRVQMRFPCRHTNEGLAEKTHHFTLLDGEMVIDTLPDTQKQERRYLIYDMIALNQLSVIERPFYERWRMIDKEVIGPRNYERQHIYQSRNPYYRYELEPFRVRRKDFFLLSTVTKLLKEFIPKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVVDDRELLYLHERGKKKLMEGSRVVFPGQKSPVISVVYLRCHEGMFPLIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20304" PGL_stop="15153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20304" e_stop="20024"/>
            <exon e_start="18845" e_stop="18627"/>
            <exon e_start="18537" e_stop="18459"/>
            <exon e_start="18216" e_stop="18083"/>
            <exon e_start="17438" e_stop="17340"/>
            <exon e_start="17216" e_stop="17112"/>
            <exon e_start="16148" e_stop="16074"/>
            <exon e_start="15763" e_stop="15677"/>
            <exon e_start="15502" e_stop="15153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.937" e_score="0.982"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="20304" e_stop="20024" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.937">
            <gDNA_intron_boundary i_start="20023" i_stop="18846" i_length="1178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18845" e_stop="18627" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="18626" i_stop="18538" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18537" e_stop="18459" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18458" i_stop="18217" i_length="242"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18216" e_stop="18083" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18082" i_stop="17439" i_length="644"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17438" e_stop="17340" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17339" i_stop="17217" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17216" e_stop="17112" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.973">
            <gDNA_intron_boundary i_start="17111" i_stop="16149" i_length="963"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16148" e_stop="16074" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.770" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16073" i_stop="15764" i_length="310"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15763" e_stop="15677" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.965" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15676" i_stop="15503" i_length="174"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15502" e_stop="15153" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20304" stop="20024"/>
              <exon start="18845" stop="18627"/>
              <exon start="18537" stop="18459"/>
              <exon start="18216" stop="18083"/>
              <exon start="17438" stop="17340"/>
              <exon start="17216" stop="17112"/>
              <exon start="16148" stop="16074"/>
              <exon start="15763" stop="15677"/>
              <exon start="15502" stop="15153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18676" stop="18627"/>
              <exon start="18537" stop="18459"/>
              <exon start="18216" stop="18083"/>
              <exon start="17438" stop="17349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACAAGCACAGCAGCAGCCCGTTTTCGCATTTCCCAAGATTCTCTGCAAAATCTTTATATAATTGCCCCTAAAACCCCATTTTTTACATACCCATTTCTTCTTCTTCAATATCTTGCTCTGTGATCATCTGTACTCATCTAGTAGAACCCTTTTAGCTTCTCTTTGTTTTGTTTTTTTTGGGTCAATTTAGTCATGGGAGGAGGAGATCACGGCGGCAAATCGGATATCTCATTCGCCGGAATATTCGCAAGTAGCGCCTTTGCTGCTTGTTTCGCTGAG : GCGTGTACTTTACCATTGGATACTGCTAAAGTTAGACTTCAGCTTCAAAAGAAGGCAGTTGAAGGGGATGGGCTAGGTTTACCTAAATATAGGGGATTATTAGGTACTGTTGGGACCATTGCAAAGGAAGAAGGAGTAGCTTCACTATGGAAGGGTATCGTACCTGGGTTACATCGTCAATGTATATACGGAGGTCTTCGGATTGGGATGTATGAACCT : GTTAAAAACTTATATGTTGGCAAAGATCATGTTGGGGATGTGCCATTGTCTAAGAAAATACTTGCTGCACTTACAACTG : GTGCGTTGGGCATTACAGTTGCAAATCCTACAGATCTAGTTAAAGTACGTCTTCAAGCTGAAGGGAAATTGCCAGCAGGCGTGCCAAGGCGTTATTCTGGAGCTCTAAATGCTTACTCAACTATAGTGAAACAG : GAAGGAGTTCGAGCTCTGTGGACTGGTCTTGGACCCAATATTGGGCGGAATGCCATCATCAATGCAGCTGAATTAGCAAGTTATGATCAAGTGAAGGAG : GCTGTTCTCAGGATTCCTGGGTTCACAGACAATGTTGTTACTCATTTGATTGCGGGGCTTGGAGCTGGATTTTTTGCAGTTTGCATAGGGTCCCCTGTTGATGTG : GTAAAGTCAAGAATGATGGGAGATTCCGCATACAAAAACACTCTTGATTGTTTTGTCAAGACATTGAAGAATGAT : GGGCCTTTGGCTTTCTATAAAGGCTTTATCCCAAATTTTGGACGCTTGGGATCGTGGAATGTCATTATGTTTCTAACATTGGAGCAG : GCGAAGAAGTTCGTTAAAAATTTAGAATCACCTTGATGTCAAAGAGGGATGGATCATCAAACAGAGGATTACTAATTTACATGAAACATGGATTTTCATTACAAGATGGAATCGAACAAAGATATTTTTCAATATTCCCCTTCTTTTGTTTTTCGCGAATAATTCCCATTGGAGAGAACCCATAGAAACCAGCTCAGAAGCATTTAGTTTTTCCATTTTTTAGGGGACCTTACTCTTACTATTCTTAGACTGCAAAATGTTTGTCCTTCCTTCTGGTTGCCAGGGGATTCTATTACTGATTCATGGAATTGACTCCATTTATAAACAATGAAGATTGAACTTGAGCTGTG</gDNA_template>
            <first_frame> G  Q  A  Q  Q  Q  P  V  F  A  F  P  K  I  L  C  K  I  F  I  *  L  P  L  K  P  H  F  L  H  T  H  F  F  F  F  N  I  L  L  C  D  H  L  Y  S  S  S  R  T  L  L  A  S  L  C  F  V  F  F  G  S  I  *  S  W  E  E  E  I  T  A  A  N  R  I  S  H  S  P  E  Y  S  Q  V  A  P  L  L  L  V  S  L  R :   R  V  L  Y  H  W  I  L  L  K  L  D  F  S  F  K  R  R  Q  L  K  G  M  G  *  V  Y  L  N  I  G  D  Y  *  V  L  L  G  P  L  Q  R  K  K  E  *  L  H  Y  G  R  V  S  Y  L  G  Y  I  V  N  V  Y  T  E  V  F  G  L  G  C  M  N  L :   L  K  T  Y  M  L  A  K  I  M  L  G  M  C  H  C  L  R  K  Y  L  L  H  L  Q  L  :  V  R  W  A  L  Q  L  Q  I  L  Q  I  *  L  K  Y  V  F  K  L  K  G  N  C  Q  Q  A  C  Q  G  V  I  L  E  L  *  M  L  T  Q  L  *  *  N  R :   K  E  F  E  L  C  G  L  V  L  D  P  I  L  G  G  M  P  S  S  M  Q  L  N  *  Q  V  M  I  K  *  R  R :   L  F  S  G  F  L  G  S  Q  T  M  L  L  L  I  *  L  R  G  L  E  L  D  F  L  Q  F  A  *  G  P  L  L  M  W :   *  S  Q  E  *  W  E  I  P  H  T  K  T  L  L  I  V  L  S  R  H  *  R  M  M :   G  L  W  L  S  I  K  A  L  S  Q  I  L  D  A  W  D  R  G  M  S  L  C  F  *  H  W  S  R :   R  R  S  S  L  K  I  *  N  H  L  D  V  K  E  G  W  I  I  K  Q  R  I  T  N  L  H  E  T  W  I  F  I  T  R  W  N  R  T  K  I  F  F  N  I  P  L  L  L  F  F  A  N  N  S  H  W  R  E  P  I  E  T  S  S  E  A  F  S  F  S  I  F  *  G  T  L  L  L  L  F  L  D  C  K  M  F  V  L  P  S  G  C  Q  G  I  L  L  L  I  H  G  I  D  S  I  Y  K  Q  *  R  L  N  L  S  C  </first_frame>
            <second_frame>  D  K  H  S  S  S  P  F  S  H  F  P  R  F  S  A  K  S  L  Y  N  C  P  *  N  P  I  F  Y  I  P  I  S  S  S  S  I  S  C  S  V  I  I  C  T  H  L  V  E  P  F  *  L  L  F  V  L  F  F  L  G  Q  F  S  H  G  R  R  R  S  R  R  Q  I  G  Y  L  I  R  R  N  I  R  K  *  R  L  C  C  L  F  R  *   : G  V  Y  F  T  I  G  Y  C  *  S  *  T  S  A  S  K  E  G  S  *  R  G  W  A  R  F  T  *  I  *  G  I  I  R  Y  C  W  D  H  C  K  G  R  R  S  S  F  T  M  E  G  Y  R  T  W  V  T  S  S  M  Y  I  R  R  S  S  D  W  D  V  *  T   : C  *  K  L  I  C  W  Q  R  S  C  W  G  C  A  I  V  *  E  N  T  C  C  T  Y  N  W :   C  V  G  H  Y  S  C  K  S  Y  R  S  S  *  S  T  S  S  S  *  R  E  I  A  S  R  R  A  K  A  L  F  W  S  S  K  C  L  L  N  Y  S  E  T   : G  R  S  S  S  S  V  D  W  S  W  T  Q  Y  W  A  E  C  H  H  Q  C  S  *  I  S  K  L  *  S  S  E  G   : G  C  S  Q  D  S  W  V  H  R  Q  C  C  Y  S  F  D  C  G  A  W  S  W  I  F  C  S  L  H  R  V  P  C  *  C   : G  K  V  K  N  D  G  R  F  R  I  Q  K  H  S  *  L  F  C  Q  D  I  E  E  *   : W  A  F  G  F  L  *  R  L  Y  P  K  F  W  T  L  G  I  V  E  C  H  Y  V  S  N  I  G  A   : G  E  E  V  R  *  K  F  R  I  T  L  M  S  K  R  D  G  S  S  N  R  G  L  L  I  Y  M  K  H  G  F  S  L  Q  D  G  I  E  Q  R  Y  F  S  I  F  P  F  F  C  F  S  R  I  I  P  I  G  E  N  P  *  K  P  A  Q  K  H  L  V  F  P  F  F  R  G  P  Y  S  Y  Y  S  *  T  A  K  C  L  S  F  L  L  V  A  R  G  F  Y  Y  *  F  M  E  L  T  P  F  I  N  N  E  D  *  T  *  A  V </second_frame>
            <third_frame>   T  S  T  A  A  A  R  F  R  I  S  Q  D  S  L  Q  N  L  Y  I  I  A  P  K  T  P  F  F  T  Y  P  F  L  L  L  Q  Y  L  A  L  *  S  S  V  L  I  *  *  N  P  F  S  F  S  L  F  C  F  F  W  V  N  L  V  M  G  G  G  D  H  G  G  K  S  D  I  S  F  A  G  I  F  A  S  S  A  F  A  A  C  F  A  E  :  A  C  T  L  P  L  D  T  A  K  V  R  L  Q  L  Q  K  K  A  V  E  G  D  G  L  G  L  P  K  Y  R  G  L  L  G  T  V  G  T  I  A  K  E  E  G  V  A  S  L  W  K  G  I  V  P  G  L  H  R  Q  C  I  Y  G  G  L  R  I  G  M  Y  E  P  :  V  K  N  L  Y  V  G  K  D  H  V  G  D  V  P  L  S  K  K  I  L  A  A  L  T  T   : G  A  L  G  I  T  V  A  N  P  T  D  L  V  K  V  R  L  Q  A  E  G  K  L  P  A  G  V  P  R  R  Y  S  G  A  L  N  A  Y  S  T  I  V  K  Q  :  E  G  V  R  A  L  W  T  G  L  G  P  N  I  G  R  N  A  I  I  N  A  A  E  L  A  S  Y  D  Q  V  K  E  :  A  V  L  R  I  P  G  F  T  D  N  V  V  T  H  L  I  A  G  L  G  A  G  F  F  A  V  C  I  G  S  P  V  D  V  :  V  K  S  R  M  M  G  D  S  A  Y  K  N  T  L  D  C  F  V  K  T  L  K  N  D  :  G  P  L  A  F  Y  K  G  F  I  P  N  F  G  R  L  G  S  W  N  V  I  M  F  L  T  L  E  Q  :  A  K  K  F  V  K  N  L  E  S  P  *  C  Q  R  G  M  D  H  Q  T  E  D  Y  *  F  T  *  N  M  D  F  H  Y  K  M  E  S  N  K  D  I  F  Q  Y  S  P  S  F  V  F  R  E  *  F  P  L  E  R  T  H  R  N  Q  L  R  S  I  *  F  F  H  F  L  G  D  L  T  L  T  I  L  R  L  Q  N  V  C  P  S  F  W  L  P  G  D  S  I  T  D  S  W  N  *  L  H  L  *  T  M  K  I  E  L  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20158" stop="20024"/>
                    <exon start="18845" stop="18627"/>
                    <exon start="18537" stop="18459"/>
                    <exon start="18216" stop="18083"/>
                    <exon start="17438" stop="17340"/>
                    <exon start="17216" stop="17112"/>
                    <exon start="16148" stop="16074"/>
                    <exon start="15763" stop="15677"/>
                    <exon start="15502" stop="15467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPFSFSLFCFFWVNLVMGGGDHGGKSDISFAGIFASSAFAACFAEACTLPLDTAKVRLQLQKKAVEGDGLGLPKYRGLLGTVGTIAKEEGVASLWKGIVPGLHRQCIYGGLRIGMYEPVKNLYVGKDHVGDVPLSKKILAALTTGALGITVANPTDLVKVRLQAEGKLPAGVPRRYSGALNAYSTIVKQEGVRALWTGLGPNIGRNAIINAAELASYDQVKEAVLRIPGFTDNVVTHLIAGLGAGFFAVCIGSPVDVVKSRMMGDSAYKNTLDCFVKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQAKKFVKNLESP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15477" stop="15280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHLDVKEGWIIKQRITNLHETWIFITRWNRTKIFFNIPLLLFFANNSHWREPIETSSEAFSFSIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22753" PGL_stop="23143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22753" e_stop="23143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="22753" e_stop="23143" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22753" stop="22978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22816" stop="23143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACACGTTTCTTGCTGAAAATGGCTATAAAAAGAAGTCAATTTTCATTTTTTAAAACACTAAAAATTTTCCTTCTTTGCATTTATTTTTCTCTCAAATAAAATTAAAGTGTCGATCGACTGAGTCTGTGTGACTTATTGTTGTTCTAAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTAGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATTTTATGTATTTTTTGCTTCTTCTTATTTCTGTTTCTATTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAAGAT</gDNA_template>
            <first_frame> R  H  V  S  C  *  K  W  L  *  K  E  V  N  F  H  F  L  K  H  *  K  F  S  F  F  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  Y  C  C  S  K  V  R  *  S  *  R  N  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  R  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  L  L  V  F  Y  V  F  F  A  S  S  Y  F  C  F  Y  L  L  T  L  *  I  Q  V  T  I  R  I  T  R  </first_frame>
            <second_frame>  D  T  F  L  A  E  N  G  Y  K  K  K  S  I  F  I  F  *  N  T  K  N  F  P  S  L  H  L  F  F  S  Q  I  K  L  K  C  R  S  T  E  S  V  *  L  I  V  V  L  K  F  V  E  V  K  E  I  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  Y  F  L  Y  F  M  Y  F  L  L  L  L  I  S  V  S  I  Y  *  P  Y  K  Y  R  L  L  *  E  *  Q  D </second_frame>
            <third_frame>   T  R  F  L  L  K  M  A  I  K  R  S  Q  F  S  F  F  K  T  L  K  I  F  L  L  C  I  Y  F  S  L  K  *  N  *  S  V  D  R  L  S  L  C  D  L  L  L  F  *  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  *  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  T  S  C  I  L  C  I  F  C  F  F  L  F  L  F  L  F  I  N  L  I  N  T  G  Y  Y  K  N  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25537" PGL_stop="26307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25537" e_stop="25584"/>
            <exon e_start="25736" e_stop="26307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25537" e_stop="25584" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.888">
            <gDNA_intron_boundary i_start="25585" i_stop="25735" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25736" e_stop="26307" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25537" stop="25584"/>
              <exon start="25736" stop="26068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25737" stop="26307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAG : GTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</gDNA_template>
            <first_frame> D  M  N  Q  I  K  E  M  N  V  E  V  G  R  N  E  :  V  I  R  L  L  A  R  S  F  I  S  K  T  P  L  S  D  V  F  L  P  K  Q  K  Q  R  R  A  Q  V  D  I  V  T  M  S  E  S  G  N  L  S  S  I  S  E  N  G  T  S  N  S  T  K  K  L  E  L  K  L  T  V  R  K  S  T  K  K  V  L  C  A  E  A  D  N  D  F  I  D  F  L  F  N  F  L  T  I  P  I  G  S  I  E  D  V  L  K  G  S  S  G  L  R  C  I  D  N  F  Y  K  S  V  E  A  L  D  S  K  W  F  N  M  P  P  K  Q  N  S  Y  H  S  E  D  T  S  N  D  N  F  K  T  V  L  L  K  P  N  V  A  T  H  Y  N  S  E  Y  Q  L  L  Q  I  S  E  G  K  S  E  F  Y  N  L  Y  D  P  R  Q  H  I  R  G  S  H  V  P  K  F  R  K  F   </first_frame>
            <second_frame>  I  *  I  R  L  R  R  *  M  *  K  L  A  G  T  R :   *  F  V  Y  L  L  V  H  L  F  Q  R  L  P  C  L  M  C  F  C  P  S  K  N  K  E  G  H  K  *  T  L  *  Q  C  P  S  L  E  I  C  R  P  F  L  K  M  E  R  V  I  A  P  R  S  W  S  *  S  *  Q  *  G  S  L  Q  R  R  S  C  V  Q  K  Q  T  M  I  L  L  I  F  S  S  T  S  *  R  F  L  *  D  Q  L  K  M  F  *  K  G  V  L  A  *  D  V  S  I  T  S  I  K  V  W  R  L  *  I  R  N  G  S  I  C  L  Q  S  R  I  V  T  I  V  R  I  H  L  M  T  T  L  R  Q  Y  Y  S  S  P  M  L  P  H  I  I  I  L  S  I  S  C  Y  R  F  Q  K  E  N  Q  N  F  T  I  C  M  I  Q  G  N  I  *  G  V  V  M  F  P  N  F  V  S  S  </second_frame>
            <third_frame>   Y  E  S  D  *  G  D  E  C  R  S  W  Q  E  R   : G  D  S  S  T  C  S  F  I  Y  F  K  D  S  L  V  *  C  V  S  A  Q  A  K  T  K  K  G  T  S  R  H  C  N  N  V  R  V  W  K  F  V  V  H  F  *  K  W  N  E  *  *  H  Q  E  V  G  A  E  A  N  S  K  E  V  Y  K  E  G  L  V  C  R  S  R  Q  *  F  Y  *  F  S  L  Q  L  L  D  D  S  Y  R  I  N  *  R  C  S  K  R  E  F  W  L  E  M  Y  R  *  L  L  *  K  C  G  G  F  R  F  E  M  V  Q  Y  A  S  K  A  E  *  L  P  *  *  G  Y  I  *  *  Q  L  *  D  S  I  T  Q  A  Q  C  C  H  T  L  *  F  *  V  S  A  A  T  D  F  R  R  K  I  R  I  L  Q  F  V  *  S  K  A  T  Y  K  G  *  S  C  S  Q  I  S  *  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25537" stop="25584"/>
                    <exon start="25736" stop="26305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMNQIKEMNVEVGRNEVIRLLARSFISKTPLSDVFLPKQKQRRAQVDIVTMSESGNLSSISENGTSNSTKKLELKLTVRKSTKKVLCAEADNDFIDFLFNFLTIPIGSIEDVLKGSSGLRCIDNFYKSVEALDSKWFNMPPKQNSYHSEDTSNDNFKTVLLKPNVATHYNSEYQLLQISEGKSEFYNLYDPRQHIRGSHVPKFRKF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="38482" PGL_stop="43235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38482" e_stop="38681"/>
            <exon e_start="39576" e_stop="39797"/>
            <exon e_start="40625" e_stop="40691"/>
            <exon e_start="41001" e_stop="41332"/>
            <exon e_start="41491" e_stop="41632"/>
            <exon e_start="41839" e_stop="41921"/>
            <exon e_start="42681" e_stop="42981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38482" e_stop="38681" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39576" e_stop="39797" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40625" e_stop="40691" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41001" e_stop="41332" e_length="332"/>
          </exon>
          <intron i_serial="4" don_prob="0.760" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41491" e_stop="41632" e_length="142"/>
          </exon>
          <intron i_serial="5" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41921" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.844" acc_prob="0.828">
            <gDNA_intron_boundary i_start="41922" i_stop="42680" i_length="759"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="42681" e_stop="42981" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38482" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38506" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38587" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38635" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38641" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38641" stop="38681"/>
              <exon start="39576" stop="39797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38657" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38657" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41294" stop="41332"/>
              <exon start="41491" stop="41632"/>
              <exon start="41839" stop="41921"/>
              <exon start="42681" stop="42981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41294" stop="41332"/>
              <exon start="41491" stop="41632"/>
              <exon start="41839" stop="41921"/>
              <exon start="42681" stop="42957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG : GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG : GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG : GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</gDNA_template>
            <first_frame> P  T  P  T  A  N  G  V  *  E  D  N  L  L  H  I  L  Q  Y  M  T  M  Y  F  L  L  H  *  G  T  N  W  F  I  Y  H  V  D  R  G  I  M  L  K  S  T  I  *  T  V  I  *  V  L  N  L  L  G  S  N  G  A  A  T  V  D  R :   E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  W  V  L  R  R  C  K  W  D  Y  W  *  S  T  E  :  A  S  A  R  R  G  R  S  T  R  V  A  Y  R  S  C  W  P  S  L  L  L  G  K  S  S  S  S  D  L  E  D  S  C  N  *  R  L  Q  C  L  C  G  N  S  G  N  F  H  G  R  E  R  Y  S  C  R  E  G  A  V  L  R  W  Q  H  R  R  K  G  Q  G  T  *  N  R  N  M  G  A  R  F  K  V  *  V  S  C  F  I  C  T  L  Q  G  I  K  A  E  N  S  S  F  R  N  Y  *  E  M  F  R :   L  *  W  S  R  Q  Y  S  L  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N </first_frame>
            <second_frame>  P  H  P  Q  Q  M  A  C  E  K  I  I  S  Y  I  S  Y  S  I  *  L  C  T  F  F  F  I  K  A  Q  I  G  L  Y  I  M  W  I  E  G  L  C  *  N  L  L  F  E  L  *  S  E  S  *  I  C  W  G  A  M  E  Q  P  L  L  I   : G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G  G  Y  Y  G  D  A  S  G  T  T  G  D  Q  R  R :   Q  V  L  D  E  V  E  V  R  E  L  L  I  D  H  V  G  H  R  C  C  W  G  S  R  P  A  R  T  W  K  I  H  A  I  E  D  C  N  V  Y  V  G  T  L  E  T  F  T  E  E  R  D  T  V  V  E  K  E  L  Y  S  G  G  S  I  E  G  K  D  K  G  P  E  T  G  I  W  E  L  D  L  R  S  E  F  P  V  L  F  V  P  Y  K  E  S  R  L  R  I  P  H  S  E  T  I  E  K  C  S   : G  C  D  G  R  G  N  T  V  C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E   </second_frame>
            <third_frame>   H  T  H  S  K  W  R  V  R  R  *  S  P  T  Y  L  T  V  Y  D  Y  V  L  S  S  S  L  R  H  K  L  V  Y  I  S  C  G  *  R  D  Y  V  K  I  Y  Y  L  N  C  D  L  S  L  K  F  V  G  E  Q  W  S  S  H  C  *  *  :  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  G  T  T  E  M  Q  V  G  L  L  V  I  N  G   : G  K  C  *  T  R  *  K  Y  E  S  C  L  *  I  M  L  A  I  A  A  V  G  E  V  V  Q  L  G  P  G  R  F  M  Q  L  K  T  A  M  S  M  W  E  L  W  K  L  S  R  K  R  E  I  Q  L  *  R  R  S  C  T  P  V  A  A  S  K  E  R  T  R  D  L  K  Q  E  Y  G  S  *  I  *  G  L  S  F  L  F  Y  L  Y  L  T  R  N  Q  G  *  E  F  L  I  Q  K  L  L  R  N  V  Q  :  V  V  M  V  E  A  I  Q  F  V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38645" stop="38681"/>
                    <exon start="39576" stop="39797"/>
                    <exon start="40625" stop="40691"/>
                    <exon start="41001" stop="41332"/>
                    <exon start="41491" stop="41632"/>
                    <exon start="41839" stop="41921"/>
                    <exon start="42681" stop="42829"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWGAMEQPLLIGKVASETGQRGSEKWGSYEYVGRAGSVIPTTSLAGSEVSVDEIRSAASMSVPYSPSLHAPLISSPQSQSQPQFYEQGIVYQGGYYGDASGTTGDQRRQVLDEVEVRELLIDHVGHRCCWGSRPARTWKIHAIEDCNVYVGTLETFTEERDTVVEKELYSGGSIEGKDKGPETGIWELDLRSEFPVLFVPYKESRLRIPHSETIEKCSGCDGRGNTVCPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGRIQPGKLMLQAEQLLFQTTCFTEQREFSCAITKLTSARQPTLLIRIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38651" e_stop="38681"/>
            <exon e_start="39573" e_stop="39797"/>
            <exon e_start="40625" e_stop="40691"/>
            <exon e_start="41001" e_stop="41332"/>
            <exon e_start="41491" e_stop="41632"/>
            <exon e_start="41839" e_stop="41964"/>
            <exon e_start="42681" e_stop="43235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.361" e_score="0.968"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="38651" e_stop="38681" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.361">
            <gDNA_intron_boundary i_start="38682" i_stop="39572" i_length="891"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39573" e_stop="39797" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40625" e_stop="40691" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41001" e_stop="41332" e_length="332"/>
          </exon>
          <intron i_serial="4" don_prob="0.760" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41491" e_stop="41632" e_length="142"/>
          </exon>
          <intron i_serial="5" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41964" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.937" acc_prob="0.828">
            <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="42681" e_stop="43235" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38651" stop="38681"/>
              <exon start="39573" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41332"/>
              <exon start="41491" stop="41632"/>
              <exon start="41839" stop="41964"/>
              <exon start="42681" stop="43235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41515" stop="41632"/>
              <exon start="41839" stop="41964"/>
              <exon start="42681" stop="43011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41928" stop="41964"/>
              <exon start="42681" stop="43194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGAGCAATGGAGCAGCCACTGTTGATAG : CAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG : GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG : GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAAAAAAAAGTTGTCTTCCTATCAATAATTGTCATGATAGGAAA</gDNA_template>
            <first_frame> W  G  A  M  E  Q  P  L  L  I   : A  G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G  G  Y  Y  G  D  A  S  G  T  T  G  D  Q  R  R :   Q  V  L  D  E  V  E  V  R  E  L  L  I  D  H  V  G  H  R  C  C  W  G  S  R  P  A  R  T  W  K  I  H  A  I  E  D  C  N  V  Y  V  G  T  L  E  T  F  T  E  E  R  D  T  V  V  E  K  E  L  Y  S  G  G  S  I  E  G  K  D  K  G  P  E  T  G  I  W  E  L  D  L  R  S  E  F  P  V  L  F  V  P  Y  K  E  S  R  L  R  I  P  H  S  E  T  I  E  K  C  S   : G  C  D  G  R  G  N  T  V  C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q  G  G  G  S  L  L  T  Q  K  V  A  V  V  R  W :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N  D  R  E  V  Y  M  K  D  Y  Y  P  S  R  F  C  W  G  L  C  P  C  L  E  W  L  K  L  *  F  K  N  W  I  C  C  C  H  H  W  F  E  F  V  P  S  V  Q  G  D  K  M  L  V  F  V  *  N  N  M  L  Y  D  L  H  C  S  Q  I  K  R  K  K  K  V  V  F  L  S  I  I  V  M  I  G   </first_frame>
            <second_frame>  G  E  Q  W  S  S  H  C  *  *  :  Q  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  G  T  T  E  M  Q  V  G  L  L  V  I  N  G   : G  K  C  *  T  R  *  K  Y  E  S  C  L  *  I  M  L  A  I  A  A  V  G  E  V  V  Q  L  G  P  G  R  F  M  Q  L  K  T  A  M  S  M  W  E  L  W  K  L  S  R  K  R  E  I  Q  L  *  R  R  S  C  T  P  V  A  A  S  K  E  R  T  R  D  L  K  Q  E  Y  G  S  *  I  *  G  L  S  F  L  F  Y  L  Y  L  T  R  N  Q  G  *  E  F  L  I  Q  K  L  L  R  N  V  Q  :  V  V  M  V  E  A  I  Q  F  V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  V  V  V  L  F  *  H  R  K  *  L  L  L  D   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E  M  T  E  R  F  I  *  K  T  T  I  L  L  G  F  V  G  A  F  A  L  A  W  N  G  *  S  Y  N  S  R  T  G  F  V  V  V  I  I  G  L  S  L  S  Q  V  F  K  G  T  K  C  W  F  L  C  R  I  I  C  F  M  I  C  T  V  P  K  *  K  E  K  K  K  L  S  S  Y  Q  *  L  S  *  *  E  </second_frame>
            <third_frame>   G  S  N  G  A  A  T  V  D  S :   R  E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  W  V  L  R  R  C  K  W  D  Y  W  *  S  T  E  :  A  S  A  R  R  G  R  S  T  R  V  A  Y  R  S  C  W  P  S  L  L  L  G  K  S  S  S  S  D  L  E  D  S  C  N  *  R  L  Q  C  L  C  G  N  S  G  N  F  H  G  R  E  R  Y  S  C  R  E  G  A  V  L  R  W  Q  H  R  R  K  G  Q  G  T  *  N  R  N  M  G  A  R  F  K  V  *  V  S  C  F  I  C  T  L  Q  G  I  K  A  E  N  S  S  F  R  N  Y  *  E  M  F  R :   L  *  W  S  R  Q  Y  S  L  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R  W  W  F  S  F  D  T  E  S  S  C  C  *  M  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  *  Q  R  G  L  Y  E  R  L  L  S  F  *  V  L  L  G  P  L  P  L  P  G  M  V  E  V  I  I  Q  E  L  D  L  L  L  S  S  L  V  *  V  C  P  K  C  S  R  G  Q  N  V  G  F  C  V  E  *  Y  A  L  *  F  A  L  F  P  N  K  K  K  K  K  S  C  L  P  I  N  N  C  H  D  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38651" stop="38681"/>
                    <exon start="39573" stop="39797"/>
                    <exon start="40625" stop="40691"/>
                    <exon start="41001" stop="41332"/>
                    <exon start="41491" stop="41632"/>
                    <exon start="41839" stop="41964"/>
                    <exon start="42681" stop="43065"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGAMEQPLLIAGKVASETGQRGSEKWGSYEYVGRAGSVIPTTSLAGSEVSVDEIRSAASMSVPYSPSLHAPLISSPQSQSQPQFYEQGIVYQGGYYGDASGTTGDQRRQVLDEVEVRELLIDHVGHRCCWGSRPARTWKIHAIEDCNVYVGTLETFTEERDTVVEKELYSGGSIEGKDKGPETGIWELDLRSEFPVLFVPYKESRLRIPHSETIEKCSGCDGRGNTVCPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGGSLLTQKVAVVRWRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGNDREVYMKDYYPSRFCWGLCPCLEWLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38641" e_stop="38681"/>
            <exon e_start="39576" e_stop="39797"/>
            <exon e_start="40625" e_stop="40656"/>
            <exon e_start="41525" e_stop="41632"/>
            <exon e_start="41839" e_stop="41964"/>
            <exon e_start="42681" e_stop="43194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.828" e_score="0.952"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38641" e_stop="38681" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="39576" e_stop="39797" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40625" e_stop="40656" e_length="32"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40657" i_stop="41524" i_length="868"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41525" e_stop="41632" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206"/>
          </intron>
          <exon e_serial="5" e_score="0.952">
            <gDNA_exon_boundary e_start="41839" e_stop="41964" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.828">
            <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="42681" e_stop="43194" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38641" stop="38681"/>
              <exon start="39576" stop="39797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39617" stop="39797"/>
              <exon start="40625" stop="40656"/>
              <exon start="41525" stop="41632"/>
              <exon start="41839" stop="41964"/>
              <exon start="42681" stop="42825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41928" stop="41964"/>
              <exon start="42681" stop="43194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG : GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTGGGTACTAC : TTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAA</gDNA_template>
            <first_frame> L  N  L  L  G  S  N  G  A  A  T  V  D  R :   E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  W  V  L   : L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  V  V  V  L  F  *  H  R  K  *  L  L  L  D   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E  M  T  E  R  F  I  *  K  T  T  I  L  L  G  F  V  G  A  F  A  L  A  W  N  G  *  S  Y  N  S  R  T  G  F  V  V  V  I  I  G  L  S  L  S  Q  V  F  K  G  T  K  C  W  F  L  C  R  I  I  C  F  M  I  C  T  V  P  K  *  K  E   </first_frame>
            <second_frame>  *  I  C  W  G  A  M  E  Q  P  L  L  I   : G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G  G  Y  Y  :  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R  W  W  F  S  F  D  T  E  S  S  C  C  *  M  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  *  Q  R  G  L  Y  E  R  L  L  S  F  *  V  L  L  G  P  L  P  L  P  G  M  V  E  V  I  I  Q  E  L  D  L  L  L  S  S  L  V  *  V  C  P  K  C  S  R  G  Q  N  V  G  F  C  V  E  *  Y  A  L  *  F  A  L  F  P  N  K  K  K  </second_frame>
            <third_frame>   K  F  V  G  E  Q  W  S  S  H  C  *  *  :  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  G  T  T :   C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q  G  G  G  S  L  L  T  Q  K  V  A  V  V  R  W :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N  D  R  E  V  Y  M  K  D  Y  Y  P  S  R  F  C  W  G  L  C  P  C  L  E  W  L  K  L  *  F  K  N  W  I  C  C  C  H  H  W  F  E  F  V  P  S  V  Q  G  D  K  M  L  V  F  V  *  N  N  M  L  Y  D  L  H  C  S  Q  I  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39759" stop="39797"/>
                    <exon start="40625" stop="40656"/>
                    <exon start="41525" stop="41632"/>
                    <exon start="41839" stop="41964"/>
                    <exon start="42681" stop="43065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SALLNPNPSHSFMNKGLFIRVGTTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGGSLLTQKVAVVRWRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGNDREVYMKDYYPSRFCWGLCPCLEWLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="43337" PGL_stop="43505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43337" e_stop="43505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="43337" e_stop="43505" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43337" stop="43505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAGTGCAAGT</gDNA_template>
            <first_frame> G  Y  L  N  F  N  L  I  F  E  L  N  F  Y  L  I  S  Y  D  S  I  L  H  L  C  N  P  L  S  N  Y  P  L  *  L  P  C  F  I  L  F  L  K  S  *  Y  N  V  I  I  V  F  R  K  C  K  </first_frame>
            <second_frame>  V  T  *  T  S  I  S  F  L  S  *  I  F  I  S  L  V  M  I  R  F  S  T  F  V  I  L  F  P  I  T  L  C  S  Y  P  V  L  F  Y  F  *  K  V  N  I  M  S  *  L  F  F  V  S  A  S </second_frame>
            <third_frame>   L  P  E  L  Q  S  H  F  *  V  E  F  L  S  H  *  L  *  F  D  S  P  P  L  *  S  S  F  Q  L  P  F  V  A  T  L  F  Y  F  I  F  K  K  L  I  *  C  H  N  C  F  S  *  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45339" PGL_stop="47626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45339" e_stop="46514"/>
            <exon e_start="47427" e_stop="47465"/>
            <exon e_start="47616" e_stop="47626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="0.590"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45339" e_stop="46514" e_length="1176"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="46515" i_stop="47426" i_length="912"/>
          </intron>
          <exon e_serial="2" e_score="0.590">
            <gDNA_exon_boundary e_start="47427" e_stop="47465" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="47466" i_stop="47615" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="0.818">
            <gDNA_exon_boundary e_start="47616" e_stop="47626" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45339" stop="45987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45339" stop="45793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45343" stop="45987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45364" stop="45769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45364" stop="45768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45364" stop="45737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45369" stop="45865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45374" stop="45540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45517" stop="45710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45530" stop="46263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45535" stop="45802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45556" stop="46086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45692" stop="46282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45868" stop="46230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45954" stop="46335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46082" stop="46459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46094" stop="46514"/>
              <exon start="47427" stop="47465"/>
              <exon start="47616" stop="47626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377910" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGA : GAATATGACACGACAGCCACTTGTGAATAAAAATAATTT : TTCCAAAGCAA</gDNA_template>
            <first_frame> F  L  S  L  C  F  *  S  K  S  Y  F  F  S  S  L  S  Y  *  R  K  K  I  I  R  G  R  K  *  I  S  H  S  T  M  F  S  L  S  S  I  Q  S  N  N  I  Q  S  Q  S  S  S  S  L  L  F  N  H  H  H  Q  H  S  T  I  S  T  R  F  H  H  H  R  L  L  F  P  L  R  A  Q  N  S  D  L  T  T  A  T  T  N  N  N  Y  V  D  L  D  D  N  L  T  R  L  D  K  F  S  K  S  L  S  I  S  N  I  E  E  N  T  S  L  N  P  L  L  C  S  N  N  K  L  K  I  A  I  I  G  F  G  N  F  G  Q  F  I  A  K  S  F  I  K  Q  G  H  V  V  L  A  H  S  R  S  D  Y  S  L  I  A  Q  S  L  N  V  H  F  F  Q  D  P  N  D  L  C  E  Q  H  P  D  V  I  L  L  C  T  S  I  N  S  L  E  N  V  I  R  S  L  P  I  Q  K  L  K  R  N  T  L  F  V  D  V  L  S  V  K  E  F  P  K  N  I  F  L  Q  S  L  P  K  E  F  D  I  L  C  T  H  P  M  F  G  P  T  S  G  K  D  N  W  K  G  L  P  F  M  Y  D  K  V  R  I  G  Q  E  E  S  R  I  K  R  V  N  N  F  I  N  I  F  V  K  E  G  C  R  M  V  E  M  S  C  S  E  H  D  K  Y  A  A  G  S  Q  F  I  T  H  T  I  G  R  M  L  Q  R  L  G  T  Q  T  T  P  I  N  T  K  G  Y  E  S  L  L  N  L  M  E  N  T  T  S  D  S  F  D  L  Y  C  G  L  F  M  Y  N  N  N  S  M  E  V  L  E  K  L  D  A  A  L  D  S  L  K  R  E  L  F  G  Q  V  L  Q  K  L  E  K  R  :  E  Y  D  T  T  A  T  C  E  *  K  *  F  :  F  Q  S   </first_frame>
            <second_frame>  F  F  L  C  V  F  S  L  K  V  I  S  F  L  L  S  L  I  K  E  K  K  *  *  E  G  E  N  K  F  H  I  Q  P  C  F  P  F  H  L  Y  N  L  T  I  F  N  L  N  H  L  R  R  Y  S  S  I  I  I  T  S  I  Q  L  F  Q  L  G  F  I  T  T  A  Y  S  S  L  S  V  P  K  I  A  T  *  L  Q  P  P  P  I  T  T  M  S  I  L  M  T  I  *  P  D  L  I  N  F  Q  N  H  *  V  F  R  I  S  K  K  I  H  H  *  I  P  S  Y  V  P  I  T  S  S  K  *  L  S  *  A  L  E  T  L  D  N  L  L  P  N  P  L  S  N  K  A  M  L  Y  *  L  I  H  V  V  I  I  P  S  *  H  N  P  L  M  S  T  S  F  K  I  L  M  T  Y  V  N  N  I  L  T  L  F  Y  F  A  H  P  S  I  H  S  K  T  S  F  V  P  F  P  S  K  S  L  N  V  T  H  F  S  *  T  Y  Y  Q  S  K  N  S  R  K  T  F  F  F  N  H  Y  Q  K  N  L  I  F  C  V  L  I  L  C  L  V  Q  Q  V  V  K  T  I  G  K  D  Y  H  L  C  M  T  K  L  E  L  D  K  K  S  Q  E  L  K  E  S  T  I  L  S  T  F  L  *  K  K  V  V  E  W  L  K  *  V  V  V  N  M  T  S  M  L  L  D  H  N  L  L  H  I  L  L  E  E  C  Y  K  D  L  G  H  K  Q  L  L  *  T  Q  K  D  M  K  V  C  *  I  *  W  R  I  Q  L  V  I  V  L  I  C  I  V  V  C  L  C  I  T  I  I  Q  W  R  C  *  R  N  *  M  Q  H  W  I  V  *  K  G  N  Y  L  D  K  F  F  K  S  W  R  K  E :   N  M  T  R  Q  P  L  V  N  K  N  N  F :   S  K  A  </second_frame>
            <third_frame>   S  F  F  V  F  L  V  *  K  L  F  L  F  F  S  L  L  L  K  K  K  N  N  K  R  E  K  I  N  F  T  F  N  H  V  F  P  F  I  Y  T  I  *  Q  Y  S  I  S  I  I  F  V  A  T  L  Q  S  S  S  P  A  F  N  Y  F  N  S  V  S  S  P  P  P  T  L  P  S  P  C  P  K  *  R  L  N  Y  S  H  H  Q  *  Q  L  C  R  S  *  *  Q  S  N  Q  T  *  *  I  F  K  I  I  K  Y  F  E  Y  R  R  K  Y  I  I  K  S  P  L  M  F  Q  *  Q  A  Q  N  S  Y  H  R  L  W  K  L  W  T  I  Y  C  Q  I  L  Y  Q  T  R  P  C  C  I  S  S  F  T  *  *  L  F  P  H  S  T  I  P  *  C  P  L  L  S  R  S  *  *  L  M  *  T  T  S  *  R  Y  F  T  L  H  I  H  Q  F  T  R  K  R  H  S  F  P  S  H  P  K  A  *  T  *  H  T  F  R  R  R  I  I  S  Q  R  I  P  E  K  H  F  S  S  I  T  T  K  R  I  *  Y  F  V  Y  S  S  Y  V  W  S  N  K  W  *  R  Q  L  E  R  T  T  I  Y  V  *  Q  S  *  N  W  T  R  R  V  K  N  *  K  S  Q  Q  F  Y  Q  H  F  C  K  R  R  L  *  N  G  *  N  E  L  *  *  T  *  Q  V  C  C  W  I  T  I  Y  Y  T  Y  Y  W  K  N  V  T  K  T  W  D  T  N  N  S  Y  K  H  K  R  I  *  K  F  V  E  F  D  G  E  Y  N  *  *  *  F  *  F  V  L  W  F  V  Y  V  *  Q  *  F  N  G  G  V  R  E  T  R  C  S  I  G  *  F  E  K  G  I  I  W  T  S  S  S  K  V  G  E  K   : R  I  *  H  D  S  H  L  *  I  K  I  I   : F  P  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45426" stop="46514"/>
                    <exon start="47427" stop="47456"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISHSTMFSLSSIQSNNIQSQSSSSLLFNHHHQHSTISTRFHHHRLLFPLRAQNSDLTTATTNNNYVDLDDNLTRLDKFSKSLSISNIEENTSLNPLLCSNNKLKIAIIGFGNFGQFIAKSFIKQGHVVLAHSRSDYSLIAQSLNVHFFQDPNDLCEQHPDVILLCTSINSLENVIRSLPIQKLKRNTLFVDVLSVKEFPKNIFLQSLPKEFDILCTHPMFGPTSGKDNWKGLPFMYDKVRIGQEESRIKRVNNFINIFVKEGCRMVEMSCSEHDKYAAGSQFITHTIGRMLQRLGTQTTPINTKGYESLLNLMENTTSDSFDLYCGLFMYNNNSMEVLEKLDAALDSLKRELFGQVLQKLEKREYDTTATCE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45339" e_stop="46599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45339" e_stop="46599" e_length="1261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45339" stop="45987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45339" stop="45793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45343" stop="45987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45364" stop="45769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45364" stop="45768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45364" stop="45737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45369" stop="45865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45374" stop="45540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45517" stop="45710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45530" stop="46263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45535" stop="45802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45556" stop="46086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45692" stop="46282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45868" stop="46230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45954" stop="46335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46082" stop="46459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46163" stop="46599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAGGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</gDNA_template>
            <first_frame> F  L  S  L  C  F  *  S  K  S  Y  F  F  S  S  L  S  Y  *  R  K  K  I  I  R  G  R  K  *  I  S  H  S  T  M  F  S  L  S  S  I  Q  S  N  N  I  Q  S  Q  S  S  S  S  L  L  F  N  H  H  H  Q  H  S  T  I  S  T  R  F  H  H  H  R  L  L  F  P  L  R  A  Q  N  S  D  L  T  T  A  T  T  N  N  N  Y  V  D  L  D  D  N  L  T  R  L  D  K  F  S  K  S  L  S  I  S  N  I  E  E  N  T  S  L  N  P  L  L  C  S  N  N  K  L  K  I  A  I  I  G  F  G  N  F  G  Q  F  I  A  K  S  F  I  K  Q  G  H  V  V  L  A  H  S  R  S  D  Y  S  L  I  A  Q  S  L  N  V  H  F  F  Q  D  P  N  D  L  C  E  Q  H  P  D  V  I  L  L  C  T  S  I  N  S  L  E  N  V  I  R  S  L  P  I  Q  K  L  K  R  N  T  L  F  V  D  V  L  S  V  K  E  F  P  K  N  I  F  L  Q  S  L  P  K  E  F  D  I  L  C  T  H  P  M  F  G  P  T  S  G  K  D  N  W  K  G  L  P  F  M  Y  D  K  V  R  I  G  Q  E  E  S  R  I  K  R  V  N  N  F  I  N  I  F  V  K  E  G  C  R  M  V  E  M  S  C  S  E  H  D  K  Y  A  A  G  S  Q  F  I  T  H  T  I  G  R  M  L  Q  R  L  G  T  Q  T  T  P  I  N  T  K  G  Y  E  S  L  L  N  L  M  E  N  T  T  S  D  S  F  D  L  Y  C  G  L  F  M  Y  N  N  N  S  M  E  V  L  E  K  L  D  A  A  L  D  S  L  K  R  E  L  F  G  Q  V  L  Q  K  L  E  K  R  V  E  K  G  S  R  L  A  L  P  T  P  D  F  S  K  K  I  E  K  L  K  V  E  R  K  E  L  </first_frame>
            <second_frame>  F  F  L  C  V  F  S  L  K  V  I  S  F  L  L  S  L  I  K  E  K  K  *  *  E  G  E  N  K  F  H  I  Q  P  C  F  P  F  H  L  Y  N  L  T  I  F  N  L  N  H  L  R  R  Y  S  S  I  I  I  T  S  I  Q  L  F  Q  L  G  F  I  T  T  A  Y  S  S  L  S  V  P  K  I  A  T  *  L  Q  P  P  P  I  T  T  M  S  I  L  M  T  I  *  P  D  L  I  N  F  Q  N  H  *  V  F  R  I  S  K  K  I  H  H  *  I  P  S  Y  V  P  I  T  S  S  K  *  L  S  *  A  L  E  T  L  D  N  L  L  P  N  P  L  S  N  K  A  M  L  Y  *  L  I  H  V  V  I  I  P  S  *  H  N  P  L  M  S  T  S  F  K  I  L  M  T  Y  V  N  N  I  L  T  L  F  Y  F  A  H  P  S  I  H  S  K  T  S  F  V  P  F  P  S  K  S  L  N  V  T  H  F  S  *  T  Y  Y  Q  S  K  N  S  R  K  T  F  F  F  N  H  Y  Q  K  N  L  I  F  C  V  L  I  L  C  L  V  Q  Q  V  V  K  T  I  G  K  D  Y  H  L  C  M  T  K  L  E  L  D  K  K  S  Q  E  L  K  E  S  T  I  L  S  T  F  L  *  K  K  V  V  E  W  L  K  *  V  V  V  N  M  T  S  M  L  L  D  H  N  L  L  H  I  L  L  E  E  C  Y  K  D  L  G  H  K  Q  L  L  *  T  Q  K  D  M  K  V  C  *  I  *  W  R  I  Q  L  V  I  V  L  I  C  I  V  V  C  L  C  I  T  I  I  Q  W  R  C  *  R  N  *  M  Q  H  W  I  V  *  K  G  N  Y  L  D  K  F  F  K  S  W  R  K  E  W  K  R  E  V  G  *  L  Y  L  L  L  I  L  V  R  K  L  K  N  *  K  L  R  G  R  N  * </second_frame>
            <third_frame>   S  F  F  V  F  L  V  *  K  L  F  L  F  F  S  L  L  L  K  K  K  N  N  K  R  E  K  I  N  F  T  F  N  H  V  F  P  F  I  Y  T  I  *  Q  Y  S  I  S  I  I  F  V  A  T  L  Q  S  S  S  P  A  F  N  Y  F  N  S  V  S  S  P  P  P  T  L  P  S  P  C  P  K  *  R  L  N  Y  S  H  H  Q  *  Q  L  C  R  S  *  *  Q  S  N  Q  T  *  *  I  F  K  I  I  K  Y  F  E  Y  R  R  K  Y  I  I  K  S  P  L  M  F  Q  *  Q  A  Q  N  S  Y  H  R  L  W  K  L  W  T  I  Y  C  Q  I  L  Y  Q  T  R  P  C  C  I  S  S  F  T  *  *  L  F  P  H  S  T  I  P  *  C  P  L  L  S  R  S  *  *  L  M  *  T  T  S  *  R  Y  F  T  L  H  I  H  Q  F  T  R  K  R  H  S  F  P  S  H  P  K  A  *  T  *  H  T  F  R  R  R  I  I  S  Q  R  I  P  E  K  H  F  S  S  I  T  T  K  R  I  *  Y  F  V  Y  S  S  Y  V  W  S  N  K  W  *  R  Q  L  E  R  T  T  I  Y  V  *  Q  S  *  N  W  T  R  R  V  K  N  *  K  S  Q  Q  F  Y  Q  H  F  C  K  R  R  L  *  N  G  *  N  E  L  *  *  T  *  Q  V  C  C  W  I  T  I  Y  Y  T  Y  Y  W  K  N  V  T  K  T  W  D  T  N  N  S  Y  K  H  K  R  I  *  K  F  V  E  F  D  G  E  Y  N  *  *  *  F  *  F  V  L  W  F  V  Y  V  *  Q  *  F  N  G  G  V  R  E  T  R  C  S  I  G  *  F  E  K  G  I  I  W  T  S  S  S  K  V  G  E  K  S  G  K  G  K  *  V  S  F  T  Y  S  *  F  *  *  E  N  *  K  I  E  S  *  E  E  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45426" stop="46598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISHSTMFSLSSIQSNNIQSQSSSSLLFNHHHQHSTISTRFHHHRLLFPLRAQNSDLTTATTNNNYVDLDDNLTRLDKFSKSLSISNIEENTSLNPLLCSNNKLKIAIIGFGNFGQFIAKSFIKQGHVVLAHSRSDYSLIAQSLNVHFFQDPNDLCEQHPDVILLCTSINSLENVIRSLPIQKLKRNTLFVDVLSVKEFPKNIFLQSLPKEFDILCTHPMFGPTSGKDNWKGLPFMYDKVRIGQEESRIKRVNNFINIFVKEGCRMVEMSCSEHDKYAAGSQFITHTIGRMLQRLGTQTTPINTKGYESLLNLMENTTSDSFDLYCGLFMYNNNSMEVLEKLDAALDSLKRELFGQVLQKLEKRVEKGSRLALPTPDFSKKIEKLKVERKEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47357" PGL_stop="46082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47357" e_stop="47315"/>
            <exon e_start="46514" e_stop="46082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.674"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.674">
            <gDNA_exon_boundary e_start="47357" e_stop="47315" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47314" i_stop="46515" i_length="800"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="46514" e_stop="46082" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47357" stop="47315"/>
              <exon start="46514" stop="46082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAGTTATTTTGTATAAATTGATTCATTCAATTTTTTTTTTG : TCTTTTCTCCAACTTTTGAAGAACTTGTCCAAATAATTCCCTTTTCAAACTATCCAATGCTGCATCTAGTTTCTCTAACACCTCCATTGAATTATTGTTATACATAAACAAACCACAATACAAATCAAAACTATCACTAGTTGTATTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGTGTTTATAGGAGTTGTTTGTGTCCCAAGTCTTTGTAACATTCTTCCAATAGTATGTGTAATAAATTGTGATCCAGCAGCATACTTGTCATGTTCACTACAACTCATTTCAACCATTCTACAACCTTCTTTTACAAAAATGTTGATAAAATTGTTGACTCTTTTAATTCTTGACTCTTCTTGTCCAATTCTAACTTTGTCATACATAAATGGTAGTCCTTTCCAATTGTCTTTACCACTTGTTGGACCAAAC</gDNA_template>
            <first_frame> R  S  Y  F  V  *  I  D  S  F  N  F  F  F   : V  F  S  P  T  F  E  E  L  V  Q  I  I  P  F  S  N  Y  P  M  L  H  L  V  S  L  T  P  P  L  N  Y  C  Y  T  *  T  N  H  N  T  N  Q  N  Y  H  *  L  Y  S  P  S  N  S  T  N  F  H  I  L  L  C  L  *  E  L  F  V  S  Q  V  F  V  T  F  F  Q  *  Y  V  *  *  I  V  I  Q  Q  H  T  C  H  V  H  Y  N  S  F  Q  P  F  Y  N  L  L  L  Q  K  C  *  *  N  C  *  L  F  *  F  L  T  L  L  V  Q  F  *  L  C  H  T  *  M  V  V  L  S  N  C  L  Y  H  L  L  D  Q   </first_frame>
            <second_frame>  G  V  I  L  Y  K  L  I  H  S  I  F  F  L  :  S  F  L  Q  L  L  K  N  L  S  K  *  F  P  F  Q  T  I  Q  C  C  I  *  F  L  *  H  L  H  *  I  I  V  I  H  K  Q  T  T  I  Q  I  K  T  I  T  S  C  I  L  H  Q  I  Q  Q  T  F  I  S  F  C  V  Y  R  S  C  L  C  P  K  S  L  *  H  S  S  N  S  M  C  N  K  L  *  S  S  S  I  L  V  M  F  T  T  T  H  F  N  H  S  T  T  F  F  Y  K  N  V  D  K  I  V  D  S  F  N  S  *  L  F  L  S  N  S  N  F  V  I  H  K  W  *  S  F  P  I  V  F  T  T  C  W  T  K  </second_frame>
            <third_frame>   E  L  F  C  I  N  *  F  I  Q  F  F  F  C :   L  F  S  N  F  *  R  T  C  P  N  N  S  L  F  K  L  S  N  A  A  S  S  F  S  N  T  S  I  E  L  L  L  Y  I  N  K  P  Q  Y  K  S  K  L  S  L  V  V  F  S  I  K  F  N  K  L  S  Y  P  F  V  F  I  G  V  V  C  V  P  S  L  C  N  I  L  P  I  V  C  V  I  N  C  D  P  A  A  Y  L  S  C  S  L  Q  L  I  S  T  I  L  Q  P  S  F  T  K  M  L  I  K  L  L  T  L  L  I  L  D  S  S  C  P  I  L  T  L  S  Y  I  N  G  S  P  F  Q  L  S  L  P  L  V  G  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46495" stop="46082"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTCPNNSLFKLSNAASSFSNTSIELLLYINKPQYKSKLSLVVFSIKFNKLSYPFVFIGVVCVPSLCNILPIVCVINCDPAAYLSCSLQLISTILQPSFTKMLIKLLTLLILDSSCPILTLSYINGSPFQLSLPLVGPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49361" PGL_stop="49683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49361" e_stop="49683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="49361" e_stop="49683" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49361" stop="49683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGTATAATTATATGTGTATAGCAAGAAGACATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAATCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAGTTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTACATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTATGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  Y  N  Y  M  C  I  A  R  R  H  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  N  L  E  K  I  V  F  H  C  N  C  I  I  H  S  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  H  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  M  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  C  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  I  *  K  K  L  Y  F  T  A  I  V  *  F  T  V  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  L  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  V  *  L  Y  V  Y  S  K  K  T  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  S  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  T  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  Y  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="55529" PGL_stop="54802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55529" e_stop="54802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="55529" e_stop="54802" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55529" stop="55043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55102" stop="54802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCATAACATCTCCAGCCTGATCCGTTTTGGATCCTTCCCGGCCACCCCCAAATCACCACCGCCCGTGCCACTCCCCAATACTCATCTCATGTTAACCCATGGCAAAGCCGATATCTTTAAACCCAAAAACCTTTCAGGCTACCATACTACCAAATACACCCCCTTTCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTGTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGAATGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCTAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCCCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGTTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTTAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  S  I  P  I  T  S  P  A  *  S  V  L  D  P  S  R  P  P  P  N  H  H  R  P  C  H  S  P  I  L  I  S  C  *  P  M  A  K  P  I  S  L  N  P  K  T  F  Q  A  T  I  L  P  N  T  P  P  F  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  V  V  P  K  P  H  G  R  H  P  V  E  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  K  Y  E  L  D  Y  S  E  T  F  S  P  V  I  R  K  E  T  I  R  L  V  L  S  L  A  V  P  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  F  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  *  H  L  Q  P  D  P  F  W  I  L  P  G  H  P  Q  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  K  P  F  R  L  P  Y  Y  Q  I  H  P  L  S  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  L  L  Y  L  S  P  M  G  G  T  Q  W  N  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  L  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  S  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  P  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  L  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  L  S  K  P  P  V  L  G  T  H  V  *  K  R  </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  L  H  T  H  N  I  S  S  L  I  R  F  G  S  F  P  A  T  P  K  S  P  P  P  V  P  L  P  N  T  H  L  M  L  T  H  G  K  A  D  I  F  K  P  K  N  L  S  G  Y  H  T  T  K  Y  T  P  F  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  C  C  T  *  A  P  W  A  A  P  S  G  M  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  *  V  Q  G  S  F  G  C  *  R  L  Q  S  E  V  *  A  *  L  L  R  D  I  Q  S  C  Y  S  E  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  V  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  S  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  *  A  S  P  P  C  L  V  H  T  F  E  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55373" stop="54804"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMAKPISLNPKTFQATILPNTPPFDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVVVPKPHGRHPVECKWVYKIKHNADGSISRYKARLVAKGYNQKYELDYSETFSPVIRKETIRLVLSLAVPNNWLINQLDVSNAFLHGMFDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPRAWYTRLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="66102" PGL_stop="66733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66102" e_stop="66169"/>
            <exon e_start="66258" e_stop="66733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66102" e_stop="66169" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66170" i_stop="66257" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66258" e_stop="66733" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66102" stop="66169"/>
              <exon start="66258" stop="66733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAG : ATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</gDNA_template>
            <first_frame> E  F  G  K  K  L  V  D  R  L  R  D  I  G  E  P  F  I  A  L  H  L  R :   Y  E  K  D  M  L  A  F  T  G  C  S  N  N  L  T  I  E  E  A  E  E  L  R  T  M  R  Y  E  V  K  H  W  K  E  K  E  I  D  S  K  E  K  R  L  Q  G  G  C  P  M  S  P  R  E  A  A  L  F  L  K  A  M  G  Y  L  S  T  T  R  I  Y  I  V  A  G  E  I  Y  G  N  N  S  M  D  E  F  R  S  H  Y  P  N  V  Y  S  H  S  T  L  A  T  N  E  E  L  E  A  F  K  N  Y  Q  N  R  L  A  A  V  D  Y  M  V  A  L  E  S  D  V  F  A  Y  T  Y  D  G  N  M  A  K  A  V  Q  G  H  R  R  F  E  G  F  R  K  T  I  N  P  D  </first_frame>
            <second_frame>  S  L  E  R  S  W  L  I  D  L  E  I  L  V  N  H  L  S  L  S  I  *   : D  T  R  K  T  C  *  R  L  L  A  A  A  T  I  *  L  L  K  R  L  K  N  F  V  R  *  G  M  K  *  N  I  G  R  R  K  R  *  T  A  R  K  S  D  S  R  E  A  A  P  C  P  L  G  R  L  L  Y  F  S  K  R  W  D  I  C  P  R  P  E  Y  T  L  L  Q  G  K  F  M  A  T  T  A  W  M  N  S  V  L  I  T  R  M  C  T  L  T  Q  P  L  Q  Q  M  K  N  L  R  L  S  R  I  I  K  T  V  L  L  Q  *  T  T  W  *  P  L  K  A  M  F  L  L  T  L  T  M  A  I  W  R  R  P  C  K  V  I  D  D  L  K  D  F  G  R  P  L  T  R  T </second_frame>
            <third_frame>   V  W  K  E  V  G  *  *  T  *  R  Y  W  *  T  I  Y  R  S  P  F  K  :  I  R  E  R  H  A  S  V  Y  W  L  Q  Q  Q  F  D  Y  *  R  G  *  R  T  S  Y  D  E  V  *  S  E  T  L  E  G  E  R  D  R  Q  Q  G  K  A  T  P  G  R  L  P  H  V  P  *  G  G  C  F  I  S  Q  S  D  G  I  S  V  H  D  Q  N  I  H  C  C  R  G  N  L  W  Q  Q  Q  H  G  *  I  P  F  S  L  P  E  C  V  L  S  L  N  P  C  N  K  *  R  T  *  G  F  Q  E  L  S  K  P  S  C  C  S  R  L  H  G  S  P  *  K  R  C  F  C  L  H  L  R  W  Q  Y  G  E  G  R  A  R  S  *  T  I  *  R  I  S  E  D  H  *  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66102" stop="66169"/>
                    <exon start="66258" stop="66732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFGKKLVDRLRDIGEPFIALHLRYEKDMLAFTGCSNNLTIEEAEELRTMRYEVKHWKEKEIDSKEKRLQGGCPMSPREAALFLKAMGYLSTTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTINPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="66772" PGL_stop="67440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66772" e_stop="67440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66772" e_stop="67440" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66772" stop="67440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66772" stop="67283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66772" stop="67160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</gDNA_template>
            <first_frame> F  S  S  L  E  S  K  P  T  I  I  L  I  H  F  L  H  F  F  R  F  N  F  V  R  L  I  D  S  L  D  K  G  E  I  S  W  E  E  F  A  S  K  V  K  A  L  Q  S  N  R  L  G  A  P  Y  L  R  Q  A  G  E  S  P  R  L  E  E  N  F  Y  A  N  P  L  P  G  C  L  C  N  R  S  H  E  E  A  S  K  Q  L  N  K  R  P  R  L  R  V  A  S  Q  R  *  V  L  S  M  I  I  M  W  *  I  S  S  I  S  I  Y  M  F  Y  K  W  P  I  R  G  C  Q  K  S  G  F  S  S  P  F  T  L  R  S  E  Q  K  E  R  E  I  V  V  R  S  K  A  V  L  G  S  R  D  M  M  V  Y  K  M  D  K  R  K  H  I  H  K  P  E  R  C  T  Q  K  S  F  F  R  V  E  Y  K  N  S  F  I  F  F  I  F  F  F  *  V  S  F  M  I  *  V  Q  Q  G  L  I  I  Y  V  L  P  I  H  E  K </first_frame>
            <second_frame>  F  H  H  L  N  Q  N  Q  Q  *  Y  *  Y  I  F  F  I  F  S  G  S  T  L  *  D  *  S  T  R  *  I  K  V  K  S  L  G  K  S  L  L  Q  K  L  R  P  Y  N  P  T  D  *  E  H  L  T  *  D  K  P  V  N  H  H  D  *  R  R  T  F  T  Q  I  L  Y  Q  V  A  C  V  I  D  H  T  K  K  P  V  N  N  S  T  R  D  Q  D  *  G  L  L  H  K  D  R  Y  F  Q  *  S  *  C  G  R  L  V  Q  Y  Q  Y  T  C  S  T  N  G  L  *  G  V  A  R  S  R  V  F  H  R  P  S  H  C  A  A  S  R  K  K  E  R  L  L  *  E  A  K  Q  Y  L  E  A  E  I  *  W  F  I  R  W  T  K  E  S  I  Y  T  N  Q  R  D  V  L  K  N  H  S  L  G  W  N  I  K  I  H  L  F  F  L  F  F  F  S  E  L  V  L  *  F  R  F  N  K  D  *  S  Y  M  Y  Y  Q  F  M  K   </second_frame>
            <third_frame>   F  I  T  *  I  K  T  N  N  N  T  D  T  F  S  S  F  F  Q  V  Q  L  C  K  I  D  R  L  V  R  *  R  *  N  L  L  G  R  V  C  F  K  S  *  G  L  T  I  Q  Q  I  R  S  T  L  P  K  T  S  R  *  I  T  T  I  R  G  E  L  L  R  K  S  F  T  R  L  L  V  *  S  I  T  R  R  S  Q  *  T  T  Q  Q  E  T  K  T  E  G  C  F  T  K  I  G  T  F  N  D  H  N  V  V  D  *  F  N  I  N  I  H  V  L  Q  M  A  Y  K  G  L  P  E  V  G  F  F  I  A  L  H  T  A  Q  R  A  E  R  K  R  D  C  C  K  K  Q  S  S  T  W  K  Q  R  Y  D  G  L  *  D  G  Q  K  K  A  Y  T  Q  T  R  E  M  Y  S  K  I  I  L  *  G  G  I  *  K  F  I  Y  F  F  Y  F  F  F  L  S  *  F  Y  D  L  G  S  T  R  I  D  H  I  C  I  T  N  S  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66772" stop="67083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLESKPTIILIHFLHFFRFNFVRLIDSLDKGEISWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEASKQLNKRPRLRVASQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67111" stop="67377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSISIYMFYKWPIRGCQKSGFSSPFTLRSEQKEREIVVRSKAVLGSRDMMVYKMDKRKHIHKPERCTQKSFFRVEYKNSFIFFIFFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71417" PGL_stop="71007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71417" e_stop="71007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="71417" e_stop="71007" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71417" stop="71007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCACGATCAAGATGTTCTAGAGAGACAGCTTCGCTTTGCTATTGCAGCAGGCATAATATCCCAGTGGACAATAGGTGCTGTTAGAGGTTTTCCTACTGAAAGCGCCACACAGAATCTCAAAGAGCAGGTTTATGTACCATCGATGTGGTAGTAGTGCCATAATGCCAATTCTCAGGACCTTGTTTTCTGCAGAAGTTACTACTTAAACGTAGATTTCGTTGTAATTAATCCGACAAATTATAGGTTCTTGAGGAAAGATCCATAGTGTTTTTGTAAGTGCATGATCTTTGTAAACCAGTCCCATTTGTAACTCAAAATCAGTTAATTTGATTGTGCATCTCATGGTTAAAGGATGTTATATAGATTCTTCACTGTTGTAATGAGTAGGCAGTTTTCACTTTTCACTATT</gDNA_template>
            <first_frame> Y  H  D  Q  D  V  L  E  R  Q  L  R  F  A  I  A  A  G  I  I  S  Q  W  T  I  G  A  V  R  G  F  P  T  E  S  A  T  Q  N  L  K  E  Q  V  Y  V  P  S  M  W  *  *  C  H  N  A  N  S  Q  D  L  V  F  C  R  S  Y  Y  L  N  V  D  F  V  V  I  N  P  T  N  Y  R  F  L  R  K  D  P  *  C  F  C  K  C  M  I  F  V  N  Q  S  H  L  *  L  K  I  S  *  F  D  C  A  S  H  G  *  R  M  L  Y  R  F  F  T  V  V  M  S  R  Q  F  S  L  F  T  I </first_frame>
            <second_frame>  T  T  I  K  M  F  *  R  D  S  F  A  L  L  L  Q  Q  A  *  Y  P  S  G  Q  *  V  L  L  E  V  F  L  L  K  A  P  H  R  I  S  K  S  R  F  M  Y  H  R  C  G  S  S  A  I  M  P  I  L  R  T  L  F  S  A  E  V  T  T  *  T  *  I  S  L  *  L  I  R  Q  I  I  G  S  *  G  K  I  H  S  V  F  V  S  A  *  S  L  *  T  S  P  I  C  N  S  K  S  V  N  L  I  V  H  L  M  V  K  G  C  Y  I  D  S  S  L  L  *  *  V  G  S  F  H  F  S  L   </second_frame>
            <third_frame>   P  R  S  R  C  S  R  E  T  A  S  L  C  Y  C  S  R  H  N  I  P  V  D  N  R  C  C  *  R  F  S  Y  *  K  R  H  T  E  S  Q  R  A  G  L  C  T  I  D  V  V  V  V  P  *  C  Q  F  S  G  P  C  F  L  Q  K  L  L  L  K  R  R  F  R  C  N  *  S  D  K  L  *  V  L  E  E  R  S  I  V  F  L  *  V  H  D  L  C  K  P  V  P  F  V  T  Q  N  Q  L  I  *  L  C  I  S  W  L  K  D  V  I  *  I  L  H  C  C  N  E  *  A  V  F  T  F  H  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="73820" PGL_stop="71471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73820" e_stop="73061"/>
            <exon e_start="71957" e_stop="71471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.996"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="73820" e_stop="73061" e_length="760"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73060" i_stop="71958" i_length="1103"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="71957" e_stop="71471" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73820" stop="73275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73799" stop="73220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73795" stop="73075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73089" stop="73061"/>
              <exon start="71957" stop="71471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73089" stop="73061"/>
              <exon start="71957" stop="71557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTCAAGACTCTGCTGAGGATTCACTGCTTAGCTCCGAATTGAATCTTGATGTTCTGAAAGAG : GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGTGATAGAACTGGTTCTG</gDNA_template>
            <first_frame> T  *  Q  K  H  H  G  N  N  T  F  S  S  S  I  S  S  S  S  S  F  S  Q  F  T  K  P  H  H  F  L  L  L  L  Q  I  S  L  Q  N  K  S  T  Q  V  H  H  Q  *  P  P  H  H  Y  P  R  T  P  Y  P  L  S  P  W  P  *  K  I  I  H  P  H  N  F  K  K  I  K  N  P  K  R  F  K  L  *  Y  Q  H  C  R  I  Q  H  P  N  G  R  N  *  *  L  *  *  W  G  *  F  S  I  P  K  P  T  F  G  L  L  F  W  C  S  A  E  G  V  C  A  N  S  E  S  I  T  R  A  N  G  *  R  *  V  F  R  V  E  N  V  A  V  E  S  T  *  V  C  *  S  S  W  W  T  S  I  *  C  C  Y  I  S  C  *  A  W  W  *  S  C  I  Y  G  E  S  W  E  *  *  V  R  T  R  N  G  F  V  N  E  *  R  E  S  A  N  K  G  C  Q  I  *  *  *  Y  E  D  W  M  *  L  Y  G  N  *  V  *  R  W  E  N  E  G  G  E  S  S  R  L  C  *  G  F  T  A  *  L  R  I  E  S  *  C  S  E  R   : G  *  D  V  P  L  *  F  *  S  L  D  I  F  I  Y  A  F  N  S  F  *  S  N  Y  I  V  K  E  V  W  W  S  C  I  F  *  L  K  S  A  I  A  S  V  E  I  T  *  R  N  K  G  F  D  Q  G  S  L  A  A  S  *  H  H  *  G  F  E  A  R  A  *  I  S  S  *  R  R  A  L  R  E  E  K  E  L  *  T  S  I  L  C  G  E  L  R  T  N  Q  T  K  K  K  L  L  S  L  Y  S  *  G  N  C  S  L  V  A  R  R  T  E  T  S  V  C  Y  R  W  D  T  *  D  S  L  L  F  P  F  F  *  W  G  G  C  W  Y  R  R  C  A  H  N  T  V  Y  L  *  *  N  W  F   </first_frame>
            <second_frame>  H  S  K  N  T  M  A  T  I  H  F  L  P  Q  S  L  P  H  H  H  S  H  N  S  L  N  P  T  I  F  F  S  S  S  K  F  P  Y  R  T  N  P  P  K  S  T  T  N  D  H  P  T  T  T  Q  E  P  P  T  P  S  R  R  G  R  K  K  S  S  T  P  T  T  S  K  K  S  R  T  P  K  D  S  N  F  D  I  N  I  A  E  S  N  T  Q  M  E  E  I  D  D  Y  D  D  G  V  D  F  P  Y  P  N  P  P  L  V  C  C  F  G  A  A  Q  K  E  F  V  P  T  V  R  V  S  P  E  Q  M  D  K  D  K  Y  S  E  W  K  M  L  Q  W  N  P  P  E  F  V  R  A  P  G  G  P  P  S  N  V  A  I  S  H  V  R  L  G  G  R  A  A  F  M  G  K  V  G  S  D  E  L  G  Q  E  M  V  L  L  M  N  K  E  K  V  Q  T  R  A  V  K  F  S  D  S  M  R  T  G  C  S  Y  M  E  I  K  F  K  D  G  K  M  R  V  E  K  V  Q  D  S  A  E  D  S  L  L  S  S  E  L  N  L  D  V  L  K  E  :  A  R  M  F  H  F  N  S  E  V  L  T  S  S  S  M  R  S  T  L  F  K  A  I  T  L  S  K  K  F  G  G  L  V  F  F  D  L  N  L  P  L  P  L  W  R  S  R  D  E  T  R  D  L  I  K  E  A  W  Q  Q  A  N  I  I  E  V  S  R  Q  E  L  E  F  L  L  D  E  E  H  Y  E  R  K  R  N  Y  R  P  Q  Y  F  A  E  N  Y  E  Q  T  K  Q  R  R  N  Y  Y  H  Y  T  P  E  E  I  A  P  L  W  H  D  G  L  K  L  L  F  V  T  D  G  T  L  R  I  H  Y  Y  S  P  S  F  D  G  V  V  V  G  T  E  D  V  L  I  T  P  F  T  C  D  R  T  G  S  </second_frame>
            <third_frame>   I  A  K  T  P  W  Q  Q  Y  I  F  F  L  N  L  F  L  I  I  I  L  T  I  H  *  T  P  P  F  S  S  P  P  P  N  F  L  T  E  Q  I  H  P  S  P  P  P  M  T  T  P  P  L  P  K  N  P  L  P  P  L  A  V  A  V  K  N  H  P  P  P  Q  L  Q  K  N  Q  E  P  Q  K  I  Q  T  L  I  S  T  L  Q  N  P  T  P  K  W  K  K  L  M  I  M  M  M  G  L  I  F  H  T  Q  T  H  L  W  S  V  V  L  V  Q  R  R  R  S  L  C  Q  Q  *  E  Y  H  P  S  K  W  I  K  I  S  I  Q  S  G  K  C  C  S  G  I  H  L  S  L  L  E  L  L  V  D  L  H  L  M  L  L  Y  L  M  L  G  L  V  V  E  L  H  L  W  G  K  L  G  V  M  S  *  D  K  K  W  F  C  *  *  I  K  R  K  C  K  Q  G  L  S  N  L  V  I  V  *  G  L  D  V  V  I  W  K  L  S  L  K  M  G  K  *  G  W  R  K  F  K  T  L  L  R  I  H  C  L  A  P  N  *  I  L  M  F  *  K  R :   L  G  C  S  T  L  I  L  K  S  *  H  L  H  L  C  V  Q  L  F  L  K  Q  L  H  C  Q  R  S  L  V  V  L  Y  F  L  T  *  I  C  H  C  L  C  G  D  H  V  T  K  Q  G  I  *  S  R  K  P  G  S  K  L  T  S  L  R  F  R  G  K  S  L  N  F  F  L  T  K  S  I  T  R  G  K  G  I  I  D  L  N  T  L  R  R  I  T  N  K  P  N  K  E  E  I  I  I  T  I  L  L  R  K  L  L  P  C  G  T  T  D  *  N  F  C  L  L  Q  M  G  H  L  G  F  I  T  I  P  L  L  L  M  G  W  L  L  V  Q  K  M  C  S  *  H  R  L  L  V  I  E  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73819" stop="73061"/>
                    <exon start="71957" stop="71472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSKNTMATIHFLPQSLPHHHSHNSLNPTIFFSSSKFPYRTNPPKSTTNDHPTTTQEPPTPSRRGRKKSSTPTTSKKSRTPKDSNFDINIAESNTQMEEIDDYDDGVDFPYPNPPLVCCFGAAQKEFVPTVRVSPEQMDKDKYSEWKMLQWNPPEFVRAPGGPPSNVAISHVRLGGRAAFMGKVGSDELGQEMVLLMNKEKVQTRAVKFSDSMRTGCSYMEIKFKDGKMRVEKVQDSAEDSLLSSELNLDVLKEARMFHFNSEVLTSSSMRSTLFKAITLSKKFGGLVFFDLNLPLPLWRSRDETRDLIKEAWQQANIIEVSRQELEFLLDEEHYERKRNYRPQYFAENYEQTKQRRNYYHYTPEEIAPLWHDGLKLLFVTDGTLRIHYYSPSFDGVVVGTEDVLITPFTCDRTGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="78861" PGL_stop="77287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78861" e_stop="77287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="78861" e_stop="77287" e_length="1575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78861" stop="77994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78858" stop="78068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78769" stop="78112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78748" stop="78343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78507" stop="77855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78035" stop="77287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATTGTTTGTGGGGTTAAGTTCTTCAAGTGGGAATTCCACTCAGAAATGCAATATCTATTCATTGAGCTTTAACACAAGGACTGCACCTCATTGGATGCACTCAGAACCATTAGATCCACAAGCATTTGTTGAGAAAAAAGAAGAGATGAAAGTTCATAGCAGAAGTGATTGTGCTTTGAGGATTCTTGGTGCATTGCTTTTCGGTACGGGATGTGGAGCATTAGGGGCATTAGTTGTTGTGATTGTGTGGACTGTGTTAGGGAGTAGAAGGCCAGTGGCACCAGAGGATCATCCTGCAGTAATGGAACTTCATAAGAAGGAATTCGACGAGTATAAAAAGTTCATAGTAGTTGTAGATAAAGCTATGGAAGATGGTAAGGTTAAGAATTAGGTAAAACTTGATTGAAGTGGGAATTTAGTTTTGTTGGTTATGTAAAAATCATCTTTGTTAAGTTTTGTGCTTTTTGTTCTTGTTATGTTGTGTAGCTGTAATTTAATGATTTACTATTCAAAGTGTACTAATTGCTCAGTATGGTCATTAAAATACAGCTTCAGATTGGTAGACACAAGT</gDNA_template>
            <first_frame> K  E  *  N  L  I  Q  F  S  Q  P  S  K  P  N  P  P  L  P  I  T  P  H  P  P  H  H  S  P  T  S  V  T  H  F  P  K  Q  F  P  S  T  P  F  S  I  L  I  T  N  P  R  N  S  L  R  *  N  T  S  K  S  Y  K  N  L  I  F  L  E  I  L  Y  M  G  S  F  K  K  K  S  *  *  V  P  V  E  K  R  V  Q  S  L  Q  L  S  I  A  K  V  E  P  R  S  R  M  G  T  L  S  A  S  R  Y  L  M  V  L  F  I  F  C  F  Y  F  R  T  I  Q  S  E  E  K  M  S  F  G  F  G  D  F  G  K  D  S  N  F  E  S  Q  I  A  L  Y  G  D  A  K  V  V  N  G  G  I  Q  M  S  G  S  M  G  F  S  A  G  R  I  L  N  K  K  P  F  K  L  I  D  G  N  P  R  K  M  V  S  F  S  L  H  F  V  F  S  L  S  R  E  N  G  D  G  F  A  F  V  M  V  P  I  G  Y  P  F  D  V  F  D  G  G  S  F  G  L  L  G  N  R  K  M  K  F  L  A  V  E  F  D  T  F  M  D  E  K  Y  G  D  V  N  D  N  H  V  G  V  D  L  S  S  F  I  S  V  K  V  S  N  V  S  S  V  K  L  G  L  M  N  S  G  E  K  M  Q  S  W  I  D  Y  E  A  S  S  K  R  L  E  I  R  L  S  K  L  G  D  I  K  P  V  D  T  L  L  S  C  P  I  D  M  S  Q  M  W  K  E  D  E  L  F  V  G  L  S  S  S  S  G  N  S  T  Q  K  C  N  I  Y  S  L  S  F  N  T  R  T  A  P  H  W  M  H  S  E  P  L  D  P  Q  A  F  V  E  K  K  E  E  M  K  V  H  S  R  S  D  C  A  L  R  I  L  G  A  L  L  F  G  T  G  C  G  A  L  G  A  L  V  V  V  I  V  W  T  V  L  G  S  R  R  P  V  A  P  E  D  H  P  A  V  M  E  L  H  K  K  E  F  D  E  Y  K  K  F  I  V  V  V  D  K  A  M  E  D  G  K  V  K  N  *  V  K  L  D  *  S  G  N  L  V  L  L  V  M  *  K  S  S  L  L  S  F  V  L  F  V  L  V  M  L  C  S  C  N  L  M  I  Y  Y  S  K  C  T  N  C  S  V  W  S  L  K  Y  S  F  R  L  V  D  T  S </first_frame>
            <second_frame>  K  S  K  I  L  F  N  F  H  N  L  Q  S  Q  I  H  H  S  P  S  P  P  T  P  P  I  T  H  Q  P  L  L  P  I  S  P  S  N  S  P  L  L  L  S  Q  Y  S  S  Q  T  L  E  I  L  *  D  K  I  P  Q  N  H  I  K  I  *  S  F  L  K  F  Y  T  W  V  H  L  R  R  N  L  D  K  S  Q  L  K  K  E  Y  K  V  Y  S  F  L  *  L  K  L  S  Q  D  Q  E  W  V  L  C  Q  L  P  G  I  L  W  C  C  L  S  S  V  F  T  S  E  L  S  N  L  R  R  K  C  H  L  V  L  E  I  L  V  K  I  Q  T  L  S  L  R  L  H  F  M  V  M  L  R  L  L  M  V  V  Y  K  *  V  V  Q  W  V  L  V  L  E  E  S  *  T  R  N  P  L  S  *  L  M  E  I  Q  E  K  W  C  L  F  H  C  I  L  C  F  H  C  Q  E  K  M  G  M  D  L  L  L  *  W  Y  L  L  D  I  L  L  M  C  L  M  V  A  H  L  G  Y  W  V  I  E  K  *  S  F  L  L  *  N  L  I  H  L  W  M  R  N  M  V  M  *  M  I  T  M  L  V  L  I  *  A  A  L  Y  L  *  K  *  V  M  L  V  L  L  N  W  G  *  *  I  V  V  K  R  C  N  L  G  L  I  M  K  Q  V  Q  R  D  *  K  S  G  *  A  N  *  V  T  *  S  Q  L  I  H  Y  F  L  A  L  L  I  C  H  K  C  G  K  R  M  N  C  L  W  G  *  V  L  Q  V  G  I  P  L  R  N  A  I  S  I  H  *  A  L  T  Q  G  L  H  L  I  G  C  T  Q  N  H  *  I  H  K  H  L  L  R  K  K  K  R  *  K  F  I  A  E  V  I  V  L  *  G  F  L  V  H  C  F  S  V  R  D  V  E  H  *  G  H  *  L  L  *  L  C  G  L  C  *  G  V  E  G  Q  W  H  Q  R  I  I  L  Q  *  W  N  F  I  R  R  N  S  T  S  I  K  S  S  *  *  L  *  I  K  L  W  K  M  V  R  L  R  I  R  *  N  L  I  E  V  G  I  *  F  C  W  L  C  K  N  H  L  C  *  V  L  C  F  L  F  L  L  C  C  V  A  V  I  *  *  F  T  I  Q  S  V  L  I  A  Q  Y  G  H  *  N  T  A  S  D  W  *  T  Q   </second_frame>
            <third_frame>   R  V  K  S  Y  S  I  F  T  T  F  K  A  K  S  T  T  P  H  H  P  P  P  P  P  S  L  T  N  L  C  Y  P  F  P  Q  A  I  P  L  Y  S  F  L  N  T  H  H  K  P  *  K  F  F  E  I  K  Y  L  K  I  I  *  K  F  N  L  S  *  N  S  I  H  G  F  I  *  E  E  I  L  I  S  P  S  *  K  K  S  T  K  F  T  A  F  Y  S  *  S  *  A  K  I  K  N  G  Y  F  V  S  F  Q  V  S  Y  G  V  V  Y  L  L  F  L  L  Q  N  Y  P  I  *  G  E  N  V  I  W  F  W  R  F  W  *  R  F  K  L  *  V  S  D  C  T  L  W  *  C  *  G  C  *  W  W  Y  T  N  E  W  F  N  G  F  *  C  W  K  N  L  E  Q  E  T  L  *  A  N  *  W  K  S  K  K  N  G  V  F  F  I  A  F  C  V  F  I  V  K  R  K  W  G  W  I  C  F  C  D  G  T  Y  W  I  S  F  *  C  V  *  W  W  L  I  W  A  I  G  *  *  K  N  E  V  S  C  C  R  I  *  Y  I  Y  G  *  E  I  W  *  C  E  *  *  P  C  W  C  *  F  K  Q  L  Y  I  C  E  S  E  *  C  *  F  C  *  I  G  A  N  E  *  W  *  K  D  A  I  L  D  *  L  *  S  K  F  K  E  I  R  N  Q  V  E  Q  I  R  *  H  K  A  S  *  Y  I  T  F  L  P  Y  *  Y  V  T  N  V  E  R  G  *  I  V  C  G  V  K  F  F  K  W  E  F  H  S  E  M  Q  Y  L  F  I  E  L  *  H  K  D  C  T  S  L  D  A  L  R  T  I  R  S  T  S  I  C  *  E  K  R  R  D  E  S  S  *  Q  K  *  L  C  F  E  D  S  W  C  I  A  F  R  Y  G  M  W  S  I  R  G  I  S  C  C  D  C  V  D  C  V  R  E  *  K  A  S  G  T  R  G  S  S  C  S  N  G  T  S  *  E  G  I  R  R  V  *  K  V  H  S  S  C  R  *  S  Y  G  R  W  *  G  *  E  L  G  K  T  *  L  K  W  E  F  S  F  V  G  Y  V  K  I  I  F  V  K  F  C  A  F  C  S  C  Y  V  V  *  L  *  F  N  D  L  L  F  K  V  Y  *  L  L  S  M  V  I  K  I  Q  L  Q  I  G  R  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78612" stop="77467"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPVEKRVQSLQLSIAKVEPRSRMGTLSASRYLMVLFIFCFYFRTIQSEEKMSFGFGDFGKDSNFESQIALYGDAKVVNGGIQMSGSMGFSAGRILNKKPFKLIDGNPRKMVSFSLHFVFSLSRENGDGFAFVMVPIGYPFDVFDGGSFGLLGNRKMKFLAVEFDTFMDEKYGDVNDNHVGVDLSSFISVKVSNVSSVKLGLMNSGEKMQSWIDYEASSKRLEIRLSKLGDIKPVDTLLSCPIDMSQMWKEDELFVGLSSSSGNSTQKCNIYSLSFNTRTAPHWMHSEPLDPQAFVEKKEEMKVHSRSDCALRILGALLFGTGCGALGALVVVIVWTVLGSRRPVAPEDHPAVMELHKKEFDEYKKFIVVVDKAMEDGKVKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="95953" PGL_stop="89868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95953" e_stop="95678"/>
            <exon e_start="94477" e_stop="94299"/>
            <exon e_start="93506" e_stop="93152"/>
            <exon e_start="92779" e_stop="92663"/>
            <exon e_start="90269" e_stop="89868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.989"/>
          <exon-intron don_prob="0.972" acc_prob="0.649" e_score="0.989"/>
          <exon-intron don_prob="0.198" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="95953" e_stop="95678" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="95677" i_stop="94478" i_length="1200"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="94477" e_stop="94299" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.649">
            <gDNA_intron_boundary i_start="94298" i_stop="93507" i_length="792"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="93506" e_stop="93152" e_length="355"/>
          </exon>
          <intron i_serial="3" don_prob="0.198" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93151" i_stop="92780" i_length="372"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92779" e_stop="92663" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92662" i_stop="90270" i_length="2393"/>
          </intron>
          <exon e_serial="5" e_score="0.884">
            <gDNA_exon_boundary e_start="90269" e_stop="89868" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95953" stop="95678"/>
              <exon start="94477" stop="94299"/>
              <exon start="93506" stop="93387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95678"/>
              <exon start="94477" stop="94299"/>
              <exon start="93506" stop="93152"/>
              <exon start="92779" stop="92663"/>
              <exon start="90269" stop="90099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93442" stop="93152"/>
              <exon start="92779" stop="92663"/>
              <exon start="90269" stop="89882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90153" stop="89869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="89868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="89868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="89950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGAATTTGCTAACAGCTAAAGAGAGAAGGCAAATGAGAAATGAGAGAAGAGAGAGTAAAACAGGTTACAATTGGAGAGAAGAAGTAGAGGAAAAGCTTATTAAGAAACCTAAGAAGCAATACAAGTCCTGGACTGAAGAGCTTAATCTTGATAACCTTGCTAAATTGGGTCCTCAATGGTGGGTTGTTAGAGTTTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTTCCTGATATTGATTTTCAG : GTATACATTCCATCCGTACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAGCCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGCTTTGTTGGATCCAAGGTTGGAAATAC : AAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGCTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGTTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTG : GCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATG : GGACAAGCAAAATCTTATGATGAGTCAACAGTAGGCAGCAGGATATTAGGGCAAAGGTCTGCAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGGATTTTATTCCACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</gDNA_template>
            <first_frame> E  E  N  L  L  T  A  K  E  R  R  Q  M  R  N  E  R  R  E  S  K  T  G  Y  N  W  R  E  E  V  E  E  K  L  I  K  K  P  K  K  Q  Y  K  S  W  T  E  E  L  N  L  D  N  L  A  K  L  G  P  Q  W  W  V  V  R  V  S  R  V  N  G  H  E  T  A  E  R  M  A  R  A  L  A  R  N  F  P  D  I  D  F  Q  :  V  Y  I  P  S  V  Q  V  K  R  K  L  K  N  G  T  L  S  I  K  P  K  P  L  F  P  G  C  V  F  L  R  C  V  L  N  K  E  I  H  D  F  I  R  E  C  T  G  I  G  G  F  V  G  S  K  V  G  N  T :   K  R  Q  I  N  K  P  R  P  V  D  E  D  D  L  E  A  I  F  K  Q  A  K  E  E  Q  E  K  A  D  Q  A  F  E  E  E  E  Q  G  E  G  G  L  D  S  K  L  T  K  N  S  S  I  A  T  L  D  D  K  A  V  P  K  K  R  G  R  Q  S  K  K  A  S  D  L  L  A  V  D  A  L  R  G  S  D  D  K  S  L  I  P  G  S  T  I  E  V  V  S  G  A  F  A  G  F  S  G  I  L  K  K  V  D  S  K  A  G  L  :  A  T  V  G  F  S  L  F  G  K  E  T  L  A  D  I  D  V  K  E  I  V  A  E  V  G  *  P  V  *  A  V  D  T  F  L  S  E  M  :  G  Q  A  K  S  Y  D  E  S  T  V  G  S  R  I  L  G  Q  R  S  A  S  D  *  S  *  G  M  F  *  A  N  L  P  R  G  F  Y  S  T  V  N  L  G  I  E  L  L  Q  F  *  W  S  I  L  L  L  K  N  E  H  S  G  A  D  Q  M  S  V  K  L  L  E  V  I  C  M  N  V  S  N  K  R  G  C  S  S  H  K  W  K  L  S  C  I  I  F  P  C  G  *  T  Y  S  C  F  F  L  F  V  G  C  I  R  S  L  S  I  C  Y  E  I  S  C  K  F  L  E  F  N  L  S  S  * </first_frame>
            <second_frame>  K  R  I  C  *  Q  L  K  R  E  G  K  *  E  M  R  E  E  R  V  K  Q  V  T  I  G  E  K  K  *  R  K  S  L  L  R  N  L  R  S  N  T  S  P  G  L  K  S  L  I  L  I  T  L  L  N  W  V  L  N  G  G  L  L  E  F  L  E  L  M  V  M  K  L  L  N  G  W  L  V  L  L  L  G  T  F  L  I  L  I  F  R :   Y  T  F  H  P  Y  K  S  K  G  N  *  K  M  E  H  F  Q  L  S  Q  N  P  F  S  Q  D  V  C  F  *  D  V  Y  *  T  R  K  Y  M  I  S  F  E  N  V  L  E  L  E  A  L  L  D  P  R  L  E  I   : Q  N  G  R  S  T  N  P  D  L  L  M  R  M  T  W  R  P  Y  S  N  K  R  R  K  S  K  R  K  L  I  K  L  L  K  K  R  N  K  E  K  E  V  *  I  P  S  *  Q  K  T  L  V  *  L  P  L  T  T  K  L  C  P  K  N  E  E  G  N  L  K  K  L  Q  T  C  L  Q  L  M  R  *  E  D  Q  M  I  N  L  *  Y  Q  G  Q  L  L  K  L  C  P  E  P  L  L  D  F  Q  G  F  S  R  R  L  I  A  R  Q  D  W :   Q  L  L  D  F  L  C  L  A  R  R  L  *  L  I  *  M  S  K  K  L  *  Q  R  L  A  D  L  F  R  L  W  I  L  F  C  L  R  W :   D  K  Q  N  L  M  M  S  Q  Q  *  A  A  G  Y  *  G  K  G  L  Q  V  I  K  A  K  A  C  F  K  L  I  C  L  G  D  F  I  P  Q  L  T  W  V  S  N  C  C  N  F  D  G  V  Y  C  C  *  R  M  N  I  R  V  Q  I  K  C  L  *  S  Y  L  K  L  Y  A  *  M  C  Q  I  K  E  D  A  A  L  I  N  G  S  C  L  V  L  F  F  L  V  D  E  H  T  R  V  F  F  S  L  *  A  V  F  E  A  C  Q  S  V  M  K  L  V  A  S  S  W  S  L  I  Y  H  P   </second_frame>
            <third_frame>   R  E  F  A  N  S  *  R  E  K  A  N  E  K  *  E  K  R  E  *  N  R  L  Q  L  E  R  R  S  R  G  K  A  Y  *  E  T  *  E  A  I  Q  V  L  D  *  R  A  *  S  *  *  P  C  *  I  G  S  S  M  V  G  C  *  S  F  *  S  *  W  S  *  N  C  *  T  D  G  S  C  S  C  *  E  L  S  *  Y  *  F  S   : G  I  H  S  I  R  T  S  Q  K  E  I  K  K  W  N  T  F  N  *  A  K  T  P  F  P  R  M  C  V  S  E  M  C  T  E  Q  G  N  T  *  F  H  S  R  M  Y  W  N  W  R  L  C  W  I  Q  G  W  K  Y  :  K  T  A  D  Q  Q  T  Q  T  C  *  *  G  *  P  G  G  H  I  Q  T  S  E  G  R  A  R  E  S  *  S  S  F  *  R  R  G  T  R  R  R  R  F  R  F  Q  A  D  K  K  L  *  Y  S  Y  P  *  R  Q  S  C  A  Q  K  T  R  K  A  I  *  K  S  F  R  P  A  C  S  *  C  V  E  R  I  R  *  *  I  F  N  T  R  V  N  Y  *  S  C  V  R  S  L  C  W  I  F  R  D  S  Q  E  G  *  *  Q  G  R  I   : G  N  C  W  I  F  S  V  W  Q  G  D  S  S  *  Y  R  C  Q  R  N  C  S  R  G  W  L  T  C  L  G  C  G  Y  F  F  V  *  D   : G  T  S  K  I  L  *  *  V  N  S  R  Q  Q  D  I  R  A  K  V  C  K  *  L  K  L  R  H  V  L  S  *  F  A  *  G  I  L  F  H  S  *  L  G  Y  R  T  A  A  I  L  M  E  Y  T  V  A  E  E  *  T  F  G  C  R  S  N  V  C  K  A  T  *  S  Y  M  H  E  C  V  K  *  K  R  M  Q  L  S  *  M  E  V  V  L  Y  Y  F  S  L  W  M  N  I  L  V  F  F  S  L  C  R  L  Y  S  K  P  V  N  L  L  *  N  *  L  Q  V  L  G  V  *  S  I  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95953" stop="95678"/>
                    <exon start="94477" stop="94299"/>
                    <exon start="93506" stop="93152"/>
                    <exon start="92779" stop="92699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENLLTAKERRQMRNERRESKTGYNWREEVEEKLIKKPKKQYKSWTEELNLDNLAKLGPQWWVVRVSRVNGHETAERMARALARNFPDIDFQVYIPSVQVKRKLKNGTLSIKPKPLFPGCVFLRCVLNKEIHDFIRECTGIGGFVGSKVGNTKRQINKPRPVDEDDLEAIFKQAKEEQEKADQAFEEEEQGEGGLDSKLTKNSSIATLDDKAVPKKRGRQSKKASDLLAVDALRGSDDKSLIPGSTIEVVSGAFAGFSGILKKVDSKAGLATVGFSLFGKETLADIDVKEIVAEVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="105360" PGL_stop="105773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105360" e_stop="105375"/>
            <exon e_start="105461" e_stop="105773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105360" e_stop="105375" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="105376" i_stop="105460" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="105461" e_stop="105773" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105360" stop="105375"/>
              <exon start="105461" stop="105773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105360" stop="105375"/>
              <exon start="105461" stop="105773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTTTAAGCCCAG : TTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTATG</gDNA_template>
            <first_frame> Q  I  L  S  P   : V  K  N  I  R  S  L  K  D  *  K  I  F  V  Q  E  I  D  E  Y  L  H  R  *  L  *  Q  L  T  E  F  I  K  F  S  F  T  *  *  L  S  I  H  *  Q  K  S  A  S  A  L  D  *  D  L  F  P  *  D  *  Q  L  Q  A  *  P  V  Y  *  L  Y  I  A  Y  V  *  A  Y  *  G  N  L  I  N  I  F  D  M  T  K  L  I  A  N  L  I  M  R  N  I  *  L  L  L   </first_frame>
            <second_frame>  K  F  *  A  Q  :  L  K  I  S  E  A  *  R  I  R  R  S  L  C  K  K  S  M  N  T  Y  T  D  D  Y  D  S  *  L  N  S  S  N  L  V  L  H  S  N  C  P  F  I  S  K  K  V  Q  V  H  W  I  R  I  Y  F  H  R  I  N  S  C  R  P  S  Q  Y  I  D  Y  I  *  L  M  S  K  H  I  R  G  I  *  *  I  Y  L  T  *  P  S  L  *  Q  I  *  L  *  E  I  S  D  Y  C  Y  </second_frame>
            <third_frame>   N  F  K  P  S :   *  K  Y  Q  K  L  E  G  L  E  D  L  C  A  R  N  R  *  I  L  T  P  M  T  M  T  V  D  *  I  H  Q  I  *  F  Y  I  V  T  V  H  S  L  A  K  K  C  K  C  T  G  L  G  F  I  S  I  G  L  T  A  A  G  L  A  S  I  L  I  I  Y  S  L  C  L  S  I  L  G  E  F  D  K  Y  I  *  H  D  Q  A  Y  S  K  F  D  Y  E  K  Y  L  I  I  V  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="108705" PGL_stop="106130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108705" e_stop="108242"/>
            <exon e_start="107505" e_stop="107281"/>
            <exon e_start="106986" e_stop="106480"/>
            <exon e_start="106382" e_stop="106130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108705" e_stop="108242" e_length="464"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107505" e_stop="107281" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.885" acc_prob="0.990">
            <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106986" e_stop="106480" e_length="507"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106382" e_stop="106130" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108705" stop="108242"/>
              <exon start="107505" stop="107456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108702" stop="108242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108696" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108696" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108695" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106480"/>
              <exon start="106382" stop="106143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108694" stop="108242"/>
              <exon start="107505" stop="107401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108685" stop="108242"/>
              <exon start="107505" stop="107457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108674" stop="108242"/>
              <exon start="107505" stop="107326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108667" stop="108242"/>
              <exon start="107505" stop="107299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108665" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108660" stop="108242"/>
              <exon start="107505" stop="107329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108659" stop="108242"/>
              <exon start="107505" stop="107296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108658" stop="108268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108651" stop="108242"/>
              <exon start="107505" stop="107442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108645" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108494" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108490" stop="108242"/>
              <exon start="107505" stop="107296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107456" stop="107281"/>
              <exon start="106986" stop="106583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107334" stop="107281"/>
              <exon start="106986" stop="106480"/>
              <exon start="106382" stop="106372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106886" stop="106480"/>
              <exon start="106382" stop="106130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106757" stop="106480"/>
              <exon start="106382" stop="106138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106757" stop="106480"/>
              <exon start="106382" stop="106246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106628" stop="106480"/>
              <exon start="106382" stop="106138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219398" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG : GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG : CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG : ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAAATGTTTGT</gDNA_template>
            <first_frame> N  E  L  V  N  *  E  I  L  V  I  S  R  I  L  R  K  S  Q  W  Q  Q  Q  Q  Q  L  H  I  *  V  L  *  T  K  R  L  H  F  Y  L  P  W  T  K  R  L  H  F  Y  A  Q  K  T  A  Q  R  E  G  H  L  M  E  E  L  S  A  W  Q  *  R  Q  L  Q  V  L  H  K  P  R  K  R  V  A  M  S  Y  K  L  *  Q  V  G  Y  *  D  K  N  K  L  E  L  L  M  L  N  L  P  *  *  F  Q  V  F  Q  W  L  V  N  R  L  L  L  W  S  K  E  L  E  F  L  T  L  L  E  F  K  V  L  S  I  F  K  E  K  I  R  R  N  L  M  L  S  L  M  R :   F  S  R  I  V  *  D  Q  V  E  G  L  G  L  *  H  Q  K  K  R  M  Y  L  W  Q  W  K  R  V  T  Q  A  T  T  L  W  C  L  I  L  L  M  D  H  Q  T  L  M  L  L  Y  L  P  V  L  S  L  E  Y  T  A  R  M  M  S  A  *  L  I  L  E  M  I  P  R :   L  T  I  *  S  K  S  A  S  *  M  Y  V  N  Q  G  Q  T  F  L  Q  Q  D  T  A  C  T  Q  A  L  *  F  S  Y  S  P  W  E  M  A  F  F  P  L  T  W  I  Q  C  M  E  N  L  F  *  L  K  K  M  S  K  Y  Q  S  L  E  R  S  I  H  S  M  K  E  T  T  S  S  G  M  T  S  *  K  N  I  S  M  T  *  K  T  L  V  L  V  A  S  L  T  L  Q  G  T  L  V  V  W  *  V  T  S  I  E  L  F  Y  M  V  A  F  M  V  I  L  E  T  E  R  A  R  M  E  S  *  G  F  C  T  N  V  L  P  *  A  S  L  W  N  K  L  V  A  K  D  P  M  V  T  K  E  F  S  I  S  N  Q  L  R :   Y  I  N  E  F  H  C  T  L  E  A  Q  K  K  L  K  N  W  R  S  T  C  L  N  S  K  I  K  T  R  L  *  I  C  N  T  R  K  K  F  F  S  Q  E  V  *  E  P  I  A  K  V  I  M  V  Q  S  F  A  V  I  Q  F  I  K  Q  C  K  G  F  S  I  S  K  I  C  H  P  L  S  *  N  V  C </first_frame>
            <second_frame>  M  N  L  *  T  E  K  F  *  *  F  Q  E  S  *  E  N  H  N  G  S  N  S  N  N  F  I  F  K  C  S  R  Q  K  D  S  I  F  I  C  L  G  Q  K  D  S  I  F  M  P  K  K  Q  H  K  E  K  V  I  *  W  R  S  *  V  H  G  N  R  D  S  F  R  C  Y  T  N  Q  E  K  E  W  L  *  V  T  N  F  N  K  L  A  I  E  T  R  T  S  W  S  Y  *  C  *  T  Y  H  S  N  F  K  Y  F  N  G  L  *  T  D  C  F  F  G  P  K  S  W  N  F  *  P  Y  W  S  S  R  C  C  Q  Y  S  R  R  R  S  E  E  T  *  C  C  L  *  *   : G  F  L  E  L  S  K  I  K  W  K  D  W  D  Y  S  I  R  R  R  G  C  T  C  G  S  G  R  E  L  L  R  Q  L  H  C  G  V  *  S  S  *  W  I  I  K  H  *  C  C  C  I  Y  R  F  Y  L  W  N  I  Q  P  E  *  *  V  P  S  *  S  W  R  *  F  H   : A  *  Q  Y  R  A  K  V  H  R  E  C  M  S  T  R  D  K  P  S  C  S  R  I  L  H  V  L  K  L  C  D  F  R  T  H  L  G  K  W  R  F  F  L  *  L  G  S  N  V  W  R  I  C  S  D  S  R  K  C  P  N  T  K  V  W  K  D  L  F  I  Q  *  R  K  L  P  A  L  G  *  Q  V  E  K  I  Y  R  *  L  E  R  P  W  S  *  W  Q  A  L  L  C  K  V  H  W  *  F  G  R  *  L  P  *  N  S  S  I  W  W  H  L  W  L  S  *  R  Q  K  E  Q  E  W  K  V  E  A  F  V  R  M  C  S  H  E  L  H  C  G  T  S  W  W  Q  R  I  R  W  S  P  K  S  S  R  Y  P  T  N  *   : D  T  S  T  S  S  I  V  H  W  K  H  R  R  S  *  K  I  G  E  V  L  V  L  I  P  K  S  R  R  D  C  E  F  V  I  L  E  R  N  S  F  H  K  K  S  R  N  Q  L  L  K  S  L  W  F  K  A  L  R  *  F  N  S  *  N  N  V  K  V  F  P  Y  L  K  S  V  I  L  F  L  E  M  F   </second_frame>
            <third_frame>   *  T  C  K  L  R  N  F  S  D  F  K  N  P  K  K  I  T  M  A  A  T  A  T  T  S  Y  L  S  A  L  D  K  K  T  P  F  L  F  A  L  D  K  K  T  P  F  L  C  P  K  N  S  T  K  R  R  S  F  N  G  G  V  K  C  M  A  I  E  T  A  S  G  V  T  Q  T  K  K  K  S  G  Y  E  L  Q  T  L  T  S  W  L  L  R  Q  E  Q  A  G  V  I  D  A  E  L  T  I  V  I  S  S  I  S  M  A  C  K  Q  I  A  S  L  V  Q  R  A  G  I  S  N  L  T  G  V  Q  G  A  V  N  I  Q  G  E  D  Q  K  K  L  D  V  V  S  N  E  :  V  F  S  N  C  L  R  S  S  G  R  T  G  I  I  A  S  E  E  E  D  V  P  V  A  V  E  E  S  Y  S  G  N  Y  I  V  V  F  D  P  L  D  G  S  S  N  I  D  A  A  V  S  T  G  S  I  F  G  I  Y  S  P  N  D  E  C  L  A  D  L  G  D  D  S  T  :  L  D  N  I  E  Q  K  C  I  V  N  V  C  Q  P  G  T  N  L  L  A  A  G  Y  C  M  Y  S  S  S  V  I  F  V  L  T  L  G  N  G  V  F  S  F  N  L  D  P  M  Y  G  E  F  V  L  T  Q  E  N  V  Q  I  P  K  S  G  K  I  Y  S  F  N  E  G  N  Y  Q  L  W  D  D  K  L  K  K  Y  I  D  D  L  K  D  P  G  P  S  G  K  P  Y  S  A  R  Y  I  G  S  L  V  G  D  F  H  R  T  L  L  Y  G  G  I  Y  G  Y  P  R  D  R  K  S  K  N  G  K  L  R  L  L  Y  E  C  A  P  M  S  F  I  V  E  Q  A  G  G  K  G  S  D  G  H  Q  R  V  L  D  I  Q  P  T  E  :  I  H  Q  R  V  P  L  Y  I  G  S  T  E  E  V  E  K  L  E  K  Y  L  S  *  F  Q  N  Q  D  E  T  V  N  L  *  Y  S  K  E  I  L  F  T  R  S  L  G  T  N  C  *  S  H  Y  G  S  K  L  C  G  D  S  I  H  K  T  M  *  R  F  F  H  I  *  N  L  S  S  S  F  L  K  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108700" stop="108242"/>
                    <exon start="107505" stop="107281"/>
                    <exon start="106986" stop="106480"/>
                    <exon start="106382" stop="106311"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCKLRNFSDFKNPKKITMAATATTSYLSALDKKTPFLFALDKKTPFLCPKNSTKRRSFNGGVKCMAIETASGVTQTKKKSGYELQTLTSWLLRQEQAGVIDAELTIVISSISMACKQIASLVQRAGISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADLGDDSTLDNIEQKCIVNVCQPGTNLLAAGYCMYSSSVIFVLTLGNGVFSFNLDPMYGEFVLTQENVQIPKSGKIYSFNEGNYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDRKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKLEKYLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108665" e_stop="108421"/>
            <exon e_start="108268" e_stop="108242"/>
            <exon e_start="107505" e_stop="107281"/>
            <exon e_start="106986" e_stop="106480"/>
            <exon e_start="106382" e_stop="106130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.998"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108665" e_stop="108421" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108420" i_stop="108269" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108268" e_stop="108242" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107505" e_stop="107281" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.885" acc_prob="0.990">
            <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="106986" e_stop="106480" e_length="507"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="106382" e_stop="106130" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108665" stop="108421"/>
              <exon start="108268" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107456" stop="107281"/>
              <exon start="106986" stop="106583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107334" stop="107281"/>
              <exon start="106986" stop="106480"/>
              <exon start="106382" stop="106372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106886" stop="106480"/>
              <exon start="106382" stop="106130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106757" stop="106480"/>
              <exon start="106382" stop="106138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106757" stop="106480"/>
              <exon start="106382" stop="106246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106628" stop="106480"/>
              <exon start="106382" stop="106138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219398" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGAC : AAGAAACTTGATGTTGTCTCTAATGAG : GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG : CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG : ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAAATGTTTGT</gDNA_template>
            <first_frame> S  *  E  N  H  N  G  S  N  S  N  N  F  I  F  K  C  S  R  Q  K  D  S  I  F  I  C  L  G  Q  K  D  S  I  F  M  P  K  K  Q  H  K  E  K  V  I  *  W  R  S  *  V  H  G  N  R  D  S  F  R  C  Y  T  N  Q  E  K  E  W  L  *  V  T  N  F  N  K  L  A  I  E  T :   R  N  L  M  L  S  L  M  R :   F  S  R  I  V  *  D  Q  V  E  G  L  G  L  *  H  Q  K  K  R  M  Y  L  W  Q  W  K  R  V  T  Q  A  T  T  L  W  C  L  I  L  L  M  D  H  Q  T  L  M  L  L  Y  L  P  V  L  S  L  E  Y  T  A  R  M  M  S  A  *  L  I  L  E  M  I  P  R :   L  T  I  *  S  K  S  A  S  *  M  Y  V  N  Q  G  Q  T  F  L  Q  Q  D  T  A  C  T  Q  A  L  *  F  S  Y  S  P  W  E  M  A  F  F  P  L  T  W  I  Q  C  M  E  N  L  F  *  L  K  K  M  S  K  Y  Q  S  L  E  R  S  I  H  S  M  K  E  T  T  S  S  G  M  T  S  *  K  N  I  S  M  T  *  K  T  L  V  L  V  A  S  L  T  L  Q  G  T  L  V  V  W  *  V  T  S  I  E  L  F  Y  M  V  A  F  M  V  I  L  E  T  E  R  A  R  M  E  S  *  G  F  C  T  N  V  L  P  *  A  S  L  W  N  K  L  V  A  K  D  P  M  V  T  K  E  F  S  I  S  N  Q  L  R :   Y  I  N  E  F  H  C  T  L  E  A  Q  K  K  L  K  N  W  R  S  T  C  L  N  S  K  I  K  T  R  L  *  I  C  N  T  R  K  K  F  F  S  Q  E  V  *  E  P  I  A  K  V  I  M  V  Q  S  F  A  V  I  Q  F  I  K  Q  C  K  G  F  S  I  S  K  I  C  H  P  L  S  *  N  V  C </first_frame>
            <second_frame>  P  K  K  I  T  M  A  A  T  A  T  T  S  Y  L  S  A  L  D  K  K  T  P  F  L  F  A  L  D  K  K  T  P  F  L  C  P  K  N  S  T  K  R  R  S  F  N  G  G  V  K  C  M  A  I  E  T  A  S  G  V  T  Q  T  K  K  K  S  G  Y  E  L  Q  T  L  T  S  W  L  L  R   : Q  E  T  *  C  C  L  *  *   : G  F  L  E  L  S  K  I  K  W  K  D  W  D  Y  S  I  R  R  R  G  C  T  C  G  S  G  R  E  L  L  R  Q  L  H  C  G  V  *  S  S  *  W  I  I  K  H  *  C  C  C  I  Y  R  F  Y  L  W  N  I  Q  P  E  *  *  V  P  S  *  S  W  R  *  F  H   : A  *  Q  Y  R  A  K  V  H  R  E  C  M  S  T  R  D  K  P  S  C  S  R  I  L  H  V  L  K  L  C  D  F  R  T  H  L  G  K  W  R  F  F  L  *  L  G  S  N  V  W  R  I  C  S  D  S  R  K  C  P  N  T  K  V  W  K  D  L  F  I  Q  *  R  K  L  P  A  L  G  *  Q  V  E  K  I  Y  R  *  L  E  R  P  W  S  *  W  Q  A  L  L  C  K  V  H  W  *  F  G  R  *  L  P  *  N  S  S  I  W  W  H  L  W  L  S  *  R  Q  K  E  Q  E  W  K  V  E  A  F  V  R  M  C  S  H  E  L  H  C  G  T  S  W  W  Q  R  I  R  W  S  P  K  S  S  R  Y  P  T  N  *   : D  T  S  T  S  S  I  V  H  W  K  H  R  R  S  *  K  I  G  E  V  L  V  L  I  P  K  S  R  R  D  C  E  F  V  I  L  E  R  N  S  F  H  K  K  S  R  N  Q  L  L  K  S  L  W  F  K  A  L  R  *  F  N  S  *  N  N  V  K  V  F  P  Y  L  K  S  V  I  L  F  L  E  M  F   </second_frame>
            <third_frame>   L  R  K  S  Q  W  Q  Q  Q  Q  Q  L  H  I  *  V  L  *  T  K  R  L  H  F  Y  L  P  W  T  K  R  L  H  F  Y  A  Q  K  T  A  Q  R  E  G  H  L  M  E  E  L  S  A  W  Q  *  R  Q  L  Q  V  L  H  K  P  R  K  R  V  A  M  S  Y  K  L  *  Q  V  G  Y  *  D  :  K  K  L  D  V  V  S  N  E  :  V  F  S  N  C  L  R  S  S  G  R  T  G  I  I  A  S  E  E  E  D  V  P  V  A  V  E  E  S  Y  S  G  N  Y  I  V  V  F  D  P  L  D  G  S  S  N  I  D  A  A  V  S  T  G  S  I  F  G  I  Y  S  P  N  D  E  C  L  A  D  L  G  D  D  S  T  :  L  D  N  I  E  Q  K  C  I  V  N  V  C  Q  P  G  T  N  L  L  A  A  G  Y  C  M  Y  S  S  S  V  I  F  V  L  T  L  G  N  G  V  F  S  F  N  L  D  P  M  Y  G  E  F  V  L  T  Q  E  N  V  Q  I  P  K  S  G  K  I  Y  S  F  N  E  G  N  Y  Q  L  W  D  D  K  L  K  K  Y  I  D  D  L  K  D  P  G  P  S  G  K  P  Y  S  A  R  Y  I  G  S  L  V  G  D  F  H  R  T  L  L  Y  G  G  I  Y  G  Y  P  R  D  R  K  S  K  N  G  K  L  R  L  L  Y  E  C  A  P  M  S  F  I  V  E  Q  A  G  G  K  G  S  D  G  H  Q  R  V  L  D  I  Q  P  T  E  :  I  H  Q  R  V  P  L  Y  I  G  S  T  E  E  V  E  K  L  E  K  Y  L  S  *  F  Q  N  Q  D  E  T  V  N  L  *  Y  S  K  E  I  L  F  T  R  S  L  G  T  N  C  *  S  H  Y  G  S  K  L  C  G  D  S  I  H  K  T  M  *  R  F  F  H  I  *  N  L  S  S  S  F  L  K  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108423" stop="108421"/>
                    <exon start="108268" stop="108242"/>
                    <exon start="107505" stop="107281"/>
                    <exon start="106986" stop="106480"/>
                    <exon start="106382" stop="106311"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADLGDDSTLDNIEQKCIVNVCQPGTNLLAAGYCMYSSSVIFVLTLGNGVFSFNLDPMYGEFVLTQENVQIPKSGKIYSFNEGNYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDRKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKLEKYLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108664" stop="108421"/>
                    <exon start="108268" stop="108258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKKITMAATATTSYLSALDKKTPFLFALDKKTPFLCPKNSTKRRSFNGGVKCMAIETASGVTQTKKKSGYELQTLTSWLLRQET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="106163" PGL_stop="106735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106163" e_stop="106389"/>
            <exon e_start="106485" e_stop="106735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.747" acc_prob="0.974" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="106163" e_stop="106389" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.747" acc_prob="0.974">
            <gDNA_intron_boundary i_start="106390" i_stop="106484" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106485" e_stop="106735" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106163" stop="106389"/>
              <exon start="106485" stop="106735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATATGGAAAAACCTTTACATTGTTTTATGAATTGAATCACCGCAAAGCTTTGAACCATAATGACTTTAGCAATTGGTTCCTAGACTTCTTGTGAAAAGAATTTCTTTCGAGTATTACAAATTCACAGTCTCGTCTTGATTTTGGAATTAAGACAAGTACTTCTCCAATTTTTCAACTTCTTCTGTGCTTCCAATGTACAATGGAACTCGTTGATGTATCTGCAAA : TTGGTTGGATATCGAGAACTCTTTGGTGACCATCGGATCCTTTGCCACCAGCTTGTTCCACAATGAAGCTCATGGGAGCACATTCGTACAAAAGCCTCAACTTTCCATTCTTGCTCTTTCTGTCTCTAGGATAACCATAAATGCCACCATATAGAAGAGTTCTATGGAAGTCACCTACCAAACTACCAATGTACCTTGCAGAGTAAGGCTTGCCACTAGGACCAGGGTCTTTCAAGTCATCGATATATTTT</gDNA_template>
            <first_frame> R  Y  G  K  T  F  T  L  F  Y  E  L  N  H  R  K  A  L  N  H  N  D  F  S  N  W  F  L  D  F  L  *  K  E  F  L  S  S  I  T  N  S  Q  S  R  L  D  F  G  I  K  T  S  T  S  P  I  F  Q  L  L  L  C  F  Q  C  T  M  E  L  V  D  V  S  A  N :   W  L  D  I  E  N  S  L  V  T  I  G  S  F  A  T  S  L  F  H  N  E  A  H  G  S  T  F  V  Q  K  P  Q  L  S  I  L  A  L  S  V  S  R  I  T  I  N  A  T  I  *  K  S  S  M  E  V  T  Y  Q  T  T  N  V  P  C  R  V  R  L  A  T  R  T  R  V  F  Q  V  I  D  I  F  </first_frame>
            <second_frame>  D  M  E  K  P  L  H  C  F  M  N  *  I  T  A  K  L  *  T  I  M  T  L  A  I  G  S  *  T  S  C  E  K  N  F  F  R  V  L  Q  I  H  S  L  V  L  I  L  E  L  R  Q  V  L  L  Q  F  F  N  F  F  C  A  S  N  V  Q  W  N  S  L  M  Y  L  Q   : I  G  W  I  S  R  T  L  W  *  P  S  D  P  L  P  P  A  C  S  T  M  K  L  M  G  A  H  S  Y  K  S  L  N  F  P  F  L  L  F  L  S  L  G  *  P  *  M  P  P  Y  R  R  V  L  W  K  S  P  T  K  L  P  M  Y  L  A  E  *  G  L  P  L  G  P  G  S  F  K  S  S  I  Y  F </second_frame>
            <third_frame>   I  W  K  N  L  Y  I  V  L  *  I  E  S  P  Q  S  F  E  P  *  *  L  *  Q  L  V  P  R  L  L  V  K  R  I  S  F  E  Y  Y  K  F  T  V  S  S  *  F  W  N  *  D  K  Y  F  S  N  F  S  T  S  S  V  L  P  M  Y  N  G  T  R  *  C  I  C  K  :  L  V  G  Y  R  E  L  F  G  D  H  R  I  L  C  H  Q  L  V  P  Q  *  S  S  W  E  H  I  R  T  K  A  S  T  F  H  S  C  S  F  C  L  *  D  N  H  K  C  H  H  I  E  E  F  Y  G  S  H  L  P  N  Y  Q  C  T  L  Q  S  K  A  C  H  *  D  Q  G  L  S  S  H  R  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106259" stop="106389"/>
                    <exon start="106485" stop="106638"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEFLSSITNSQSRLDFGIKTSTSPIFQLLLCFQCTMELVDVSANWLDIENSLVTIGSFATSLFHNEAHGSTFVQKPQLSILALSVSRITINATI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="108368" PGL_stop="108637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108368" e_stop="108637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="108368" e_stop="108637" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108368" stop="108637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACTTGAAATTACTATGGTAAGTTCAGCATCAATAACTCCAGCTTGTTCTTGTCTCAATAGCCAACTTGTTAAAGTTTGTAACTCATAGCCACTCTTTTTCTTGGTTTGTGTAACACCTGAAGCTGTCTCTATTGCCATGCACTTAACTCCTCCATTAAATGACCTTCTCTTTGTGCTGTTTTTTGGGCATAAAAATGGAGTCTTTTTGTCCAAGGCAAATAAAAATGGAGTCTTTTTGTCTAGAGCACTTAAATATGAAGTTGTTGC</gDNA_template>
            <first_frame> N  T  *  N  Y  Y  G  K  F  S  I  N  N  S  S  L  F  L  S  Q  *  P  T  C  *  S  L  *  L  I  A  T  L  F  L  G  L  C  N  T  *  S  C  L  Y  C  H  A  L  N  S  S  I  K  *  P  S  L  C  A  V  F  W  A  *  K  W  S  L  F  V  Q  G  K  *  K  W  S  L  F  V  *  S  T  *  I  *  S  C  C </first_frame>
            <second_frame>  I  L  E  I  T  M  V  S  S  A  S  I  T  P  A  C  S  C  L  N  S  Q  L  V  K  V  C  N  S  *  P  L  F  F  L  V  C  V  T  P  E  A  V  S  I  A  M  H  L  T  P  P  L  N  D  L  L  F  V  L  F  F  G  H  K  N  G  V  F  L  S  K  A  N  K  N  G  V  F  L  S  R  A  L  K  Y  E  V  V   </second_frame>
            <third_frame>   Y  L  K  L  L  W  *  V  Q  H  Q  *  L  Q  L  V  L  V  S  I  A  N  L  L  K  F  V  T  H  S  H  S  F  S  W  F  V  *  H  L  K  L  S  L  L  P  C  T  *  L  L  H  *  M  T  F  S  L  C  C  F  L  G  I  K  M  E  S  F  C  P  R  Q  I  K  M  E  S  F  C  L  E  H  L  N  M  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="110976" PGL_stop="113502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110976" e_stop="111103"/>
            <exon e_start="111579" e_stop="111914"/>
            <exon e_start="112121" e_stop="112409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.967"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="110976" e_stop="111103" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="111579" e_stop="111914" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="112121" e_stop="112409" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110976" stop="111103"/>
              <exon start="111579" stop="111688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110992" stop="111103"/>
              <exon start="111579" stop="111790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111003" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111003" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111035" stop="111103"/>
              <exon start="111579" stop="111788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAGAAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA : CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAG : GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAAT</gDNA_template>
            <first_frame> K  K  K  N  L  K  I  Y  N  K  I  K  E  K  T  N  G  L  I  N  E  I  I  F  D  P  F  L  D  M  F  P  F  P  S  G  H  L  C  C  V  *  D :   *  G  E  M  *  E  F  A  K  W  *  L  C  I  C  N  F  I  N  R  K  K  V  C  I  R  K  S  K  N  T  K  R  *  L  N  *  *  *  I  *  M  Q  D  I  R  S  Y  G  S  K  H  E  G  T  H  *  N  R  *  M  Y  *  I  L  W  S  *  *  K  F  L  W  N  F  I  *  *  F  A  *  A  S  I  C  L  Q  I  M  C  P  C  L  L  S  T  M  P  Q  Y  C  *  P  L  L  Q  L  G  C  C  *  R :   S  I  L  A  R  P  M  Q  Q  E  Q  *  V  E  E  *  W  C  C  *  R  W  C  *  C  S  C  S  I  S  F  F  I  L  N  I  F  A  P  F  *  I  K  I  Y  I  N  D  C  F  F  T  N  N  F  S  V  V  C  E  D  I  A  L  N  V  L  I  L  W  V  C  *  N  F  S  L  Y  *  F  F  C  H  *  E  F  N  K  D  S  S  S  F  T  W  N </first_frame>
            <second_frame>  R  R  K  I  *  K  F  T  T  K  *  K  R  K  Q  M  A  S  S  M  K  S  S  L  I  L  F  L  T  C  S  L  F  L  Q  V  T  Y  A  V  Y  K   : T  E  V  K  C  E  S  L  P  N  G  D  C  A  F  A  I  S  S  T  G  K  R  C  V  L  E  K  A  K  T  P  K  D  D  L  I  S  S  E  Y  E  C  K  T  S  E  V  M  V  Q  N  M  K  E  H  I  E  T  D  E  C  I  E  S  C  G  L  N  R  N  F  F  G  I  S  S  D  D  L  L  E  P  Q  F  V  S  K  L  C  A  P  A  C  Y  Q  Q  C  P  N  I  V  D  L  Y  F  N  L  A  V  A  E   : G  A  Y  L  P  D  L  C  N  K  N  N  K  L  K  S  S  G  A  A  E  D  G  V  D  A  P  A  P  S  P  S  S  F  *  I  F  L  H  L  F  K  *  K  Y  I  *  M  I  V  F  L  Q  T  I  L  V  L  F  V  K  I  L  H  L  M  F  *  F  F  G  F  A  E  I  F  P  C  T  N  S  F  V  T  E  N  L  I  K  I  L  L  L  L  H  G   </second_frame>
            <third_frame>   E  E  K  F  K  N  L  Q  Q  N  K  R  E  N  K  W  P  H  Q  *  N  H  L  *  S  F  S  *  H  V  P  F  S  F  R  S  L  M  L  C  I  R  :  L  R  *  N  V  R  V  C  Q  M  V  I  V  H  L  Q  F  H  Q  Q  E  K  G  V  Y  *  K  K  Q  K  H  Q  K  M  T  *  L  V  V  N  M  N  A  R  H  Q  K  L  W  F  K  T  *  R  N  T  L  K  Q  M  N  V  L  N  L  V  V  L  I  E  I  S  L  E  F  H  L  M  I  C  L  S  L  N  L  S  P  N  Y  V  P  L  L  V  I  N  N  A  P  I  L  L  T  S  T  S  T  W  L  L  L  K  :  E  H  T  C  Q  T  Y  A  T  R  T  I  S  *  R  V  V  V  L  L  K  M  V  L  M  L  L  L  H  L  L  L  H  S  K  Y  F  C  T  F  L  N  K  N  I  Y  K  *  L  F  F  Y  K  Q  F  *  C  C  L  *  R  Y  C  T  *  C  F  N  S  L  G  L  L  K  F  F  L  V  L  I  L  L  S  L  R  I  *  *  R  F  F  F  F  Y  M  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111010" stop="111103"/>
                    <exon start="111579" stop="111914"/>
                    <exon start="112121" stop="112224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKQMASSMKSSLILFLTCSLFLQVTYAVYKTEVKCESLPNGDCAFAISSTGKRCVLEKAKTPKDDLISSEYECKTSEVMVQNMKEHIETDECIESCGLNRNFFGISSDDLLEPQFVSKLCAPACYQQCPNIVDLYFNLAVAEGAYLPDLCNKNNKLKSSGAAEDGVDAPAPSPSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110976" e_stop="111103"/>
            <exon e_start="111579" e_stop="111914"/>
            <exon e_start="112121" e_stop="112407"/>
            <exon e_start="113460" e_stop="113502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.967"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-only e_score="0.651"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="110976" e_stop="111103" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="111579" e_stop="111914" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="112121" e_stop="112407" e_length="287"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112408" i_stop="113459" i_length="1052"/>
          </intron>
          <exon e_serial="4" e_score="0.651">
            <gDNA_exon_boundary e_start="113460" e_stop="113502" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110976" stop="111103"/>
              <exon start="111579" stop="111688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110992" stop="111103"/>
              <exon start="111579" stop="111790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111003" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111003" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111035" stop="111103"/>
              <exon start="111579" stop="111788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111700" stop="111914"/>
              <exon start="112121" stop="112407"/>
              <exon start="113460" stop="113502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374067" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAGAAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA : CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAG : GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGA : AAAAGAAAAGAAAAAAAAATAGTTACTACATAAAAAGAGATGA</gDNA_template>
            <first_frame> K  K  K  N  L  K  I  Y  N  K  I  K  E  K  T  N  G  L  I  N  E  I  I  F  D  P  F  L  D  M  F  P  F  P  S  G  H  L  C  C  V  *  D :   *  G  E  M  *  E  F  A  K  W  *  L  C  I  C  N  F  I  N  R  K  K  V  C  I  R  K  S  K  N  T  K  R  *  L  N  *  *  *  I  *  M  Q  D  I  R  S  Y  G  S  K  H  E  G  T  H  *  N  R  *  M  Y  *  I  L  W  S  *  *  K  F  L  W  N  F  I  *  *  F  A  *  A  S  I  C  L  Q  I  M  C  P  C  L  L  S  T  M  P  Q  Y  C  *  P  L  L  Q  L  G  C  C  *  R :   S  I  L  A  R  P  M  Q  Q  E  Q  *  V  E  E  *  W  C  C  *  R  W  C  *  C  S  C  S  I  S  F  F  I  L  N  I  F  A  P  F  *  I  K  I  Y  I  N  D  C  F  F  T  N  N  F  S  V  V  C  E  D  I  A  L  N  V  L  I  L  W  V  C  *  N  F  S  L  Y  *  F  F  C  H  *  E  F  N  K  D  S  S  S  F  T  W   : K  K  K  R  K  K  N  S  Y  Y  I  K  R  D   </first_frame>
            <second_frame>  R  R  K  I  *  K  F  T  T  K  *  K  R  K  Q  M  A  S  S  M  K  S  S  L  I  L  F  L  T  C  S  L  F  L  Q  V  T  Y  A  V  Y  K   : T  E  V  K  C  E  S  L  P  N  G  D  C  A  F  A  I  S  S  T  G  K  R  C  V  L  E  K  A  K  T  P  K  D  D  L  I  S  S  E  Y  E  C  K  T  S  E  V  M  V  Q  N  M  K  E  H  I  E  T  D  E  C  I  E  S  C  G  L  N  R  N  F  F  G  I  S  S  D  D  L  L  E  P  Q  F  V  S  K  L  C  A  P  A  C  Y  Q  Q  C  P  N  I  V  D  L  Y  F  N  L  A  V  A  E   : G  A  Y  L  P  D  L  C  N  K  N  N  K  L  K  S  S  G  A  A  E  D  G  V  D  A  P  A  P  S  P  S  S  F  *  I  F  L  H  L  F  K  *  K  Y  I  *  M  I  V  F  L  Q  T  I  L  V  L  F  V  K  I  L  H  L  M  F  *  F  F  G  F  A  E  I  F  P  C  T  N  S  F  V  T  E  N  L  I  K  I  L  L  L  L  H  G  :  K  R  K  E  K  K  I  V  T  T  *  K  E  M  </second_frame>
            <third_frame>   E  E  K  F  K  N  L  Q  Q  N  K  R  E  N  K  W  P  H  Q  *  N  H  L  *  S  F  S  *  H  V  P  F  S  F  R  S  L  M  L  C  I  R  :  L  R  *  N  V  R  V  C  Q  M  V  I  V  H  L  Q  F  H  Q  Q  E  K  G  V  Y  *  K  K  Q  K  H  Q  K  M  T  *  L  V  V  N  M  N  A  R  H  Q  K  L  W  F  K  T  *  R  N  T  L  K  Q  M  N  V  L  N  L  V  V  L  I  E  I  S  L  E  F  H  L  M  I  C  L  S  L  N  L  S  P  N  Y  V  P  L  L  V  I  N  N  A  P  I  L  L  T  S  T  S  T  W  L  L  L  K  :  E  H  T  C  Q  T  Y  A  T  R  T  I  S  *  R  V  V  V  L  L  K  M  V  L  M  L  L  L  H  L  L  L  H  S  K  Y  F  C  T  F  L  N  K  N  I  Y  K  *  L  F  F  Y  K  Q  F  *  C  C  L  *  R  Y  C  T  *  C  F  N  S  L  G  L  L  K  F  F  L  V  L  I  L  L  S  L  R  I  *  *  R  F  F  F  F  Y  M  E :   K  E  K  K  K  K  *  L  L  H  K  K  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111010" stop="111103"/>
                    <exon start="111579" stop="111914"/>
                    <exon start="112121" stop="112224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKQMASSMKSSLILFLTCSLFLQVTYAVYKTEVKCESLPNGDCAFAISSTGKRCVLEKAKTPKDDLISSEYECKTSEVMVQNMKEHIETDECIESCGLNRNFFGISSDDLLEPQFVSKLCAPACYQQCPNIVDLYFNLAVAEGAYLPDLCNKNNKLKSSGAAEDGVDAPAPSPSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110976" e_stop="111103"/>
            <exon e_start="111579" e_stop="111914"/>
            <exon e_start="112121" e_stop="112401"/>
            <exon e_start="113458" e_stop="113478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.967"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="110976" e_stop="111103" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="111579" e_stop="111914" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112121" e_stop="112401" e_length="281"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112402" i_stop="113457" i_length="1056"/>
          </intron>
          <exon e_serial="4" e_score="0.905">
            <gDNA_exon_boundary e_start="113458" e_stop="113478" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110976" stop="111103"/>
              <exon start="111579" stop="111688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110992" stop="111103"/>
              <exon start="111579" stop="111790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111035" stop="111103"/>
              <exon start="111579" stop="111788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111799" stop="111914"/>
              <exon start="112121" stop="112401"/>
              <exon start="113458" stop="113478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111828" stop="111914"/>
              <exon start="112121" stop="112401"/>
              <exon start="113458" stop="113478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAGAAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA : CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAG : GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTA : AAAAAAGAAAAGAAAAAAAAA</gDNA_template>
            <first_frame> K  K  K  N  L  K  I  Y  N  K  I  K  E  K  T  N  G  L  I  N  E  I  I  F  D  P  F  L  D  M  F  P  F  P  S  G  H  L  C  C  V  *  D :   *  G  E  M  *  E  F  A  K  W  *  L  C  I  C  N  F  I  N  R  K  K  V  C  I  R  K  S  K  N  T  K  R  *  L  N  *  *  *  I  *  M  Q  D  I  R  S  Y  G  S  K  H  E  G  T  H  *  N  R  *  M  Y  *  I  L  W  S  *  *  K  F  L  W  N  F  I  *  *  F  A  *  A  S  I  C  L  Q  I  M  C  P  C  L  L  S  T  M  P  Q  Y  C  *  P  L  L  Q  L  G  C  C  *  R :   S  I  L  A  R  P  M  Q  Q  E  Q  *  V  E  E  *  W  C  C  *  R  W  C  *  C  S  C  S  I  S  F  F  I  L  N  I  F  A  P  F  *  I  K  I  Y  I  N  D  C  F  F  T  N  N  F  S  V  V  C  E  D  I  A  L  N  V  L  I  L  W  V  C  *  N  F  S  L  Y  *  F  F  C  H  *  E  F  N  K  D  S  S  S  F   : K  K  R  K  E  K  K  </first_frame>
            <second_frame>  R  R  K  I  *  K  F  T  T  K  *  K  R  K  Q  M  A  S  S  M  K  S  S  L  I  L  F  L  T  C  S  L  F  L  Q  V  T  Y  A  V  Y  K   : T  E  V  K  C  E  S  L  P  N  G  D  C  A  F  A  I  S  S  T  G  K  R  C  V  L  E  K  A  K  T  P  K  D  D  L  I  S  S  E  Y  E  C  K  T  S  E  V  M  V  Q  N  M  K  E  H  I  E  T  D  E  C  I  E  S  C  G  L  N  R  N  F  F  G  I  S  S  D  D  L  L  E  P  Q  F  V  S  K  L  C  A  P  A  C  Y  Q  Q  C  P  N  I  V  D  L  Y  F  N  L  A  V  A  E   : G  A  Y  L  P  D  L  C  N  K  N  N  K  L  K  S  S  G  A  A  E  D  G  V  D  A  P  A  P  S  P  S  S  F  *  I  F  L  H  L  F  K  *  K  Y  I  *  M  I  V  F  L  Q  T  I  L  V  L  F  V  K  I  L  H  L  M  F  *  F  F  G  F  A  E  I  F  P  C  T  N  S  F  V  T  E  N  L  I  K  I  L  L  L  L  :  K  K  E  K  K  K  K </second_frame>
            <third_frame>   E  E  K  F  K  N  L  Q  Q  N  K  R  E  N  K  W  P  H  Q  *  N  H  L  *  S  F  S  *  H  V  P  F  S  F  R  S  L  M  L  C  I  R  :  L  R  *  N  V  R  V  C  Q  M  V  I  V  H  L  Q  F  H  Q  Q  E  K  G  V  Y  *  K  K  Q  K  H  Q  K  M  T  *  L  V  V  N  M  N  A  R  H  Q  K  L  W  F  K  T  *  R  N  T  L  K  Q  M  N  V  L  N  L  V  V  L  I  E  I  S  L  E  F  H  L  M  I  C  L  S  L  N  L  S  P  N  Y  V  P  L  L  V  I  N  N  A  P  I  L  L  T  S  T  S  T  W  L  L  L  K  :  E  H  T  C  Q  T  Y  A  T  R  T  I  S  *  R  V  V  V  L  L  K  M  V  L  M  L  L  L  H  L  L  L  H  S  K  Y  F  C  T  F  L  N  K  N  I  Y  K  *  L  F  F  Y  K  Q  F  *  C  C  L  *  R  Y  C  T  *  C  F  N  S  L  G  L  L  K  F  F  L  V  L  I  L  L  S  L  R  I  *  *  R  F  F  F  F  * :   K  K  K  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111010" stop="111103"/>
                    <exon start="111579" stop="111914"/>
                    <exon start="112121" stop="112224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKQMASSMKSSLILFLTCSLFLQVTYAVYKTEVKCESLPNGDCAFAISSTGKRCVLEKAKTPKDDLISSEYECKTSEVMVQNMKEHIETDECIESCGLNRNFFGISSDDLLEPQFVSKLCAPACYQQCPNIVDLYFNLAVAEGAYLPDLCNKNNKLKSSGAAEDGVDAPAPSPSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="118268" PGL_stop="118811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118268" e_stop="118811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="118268" e_stop="118811" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118268" stop="118579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118271" stop="118667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118272" stop="118789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118272" stop="118655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118275" stop="118811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118277" stop="118787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118278" stop="118599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGTAATCGTATGATTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACAAATTCAGACTGTGAAACTGCGAATGACTCATTAAATTAATTATAGTTTGTTTGATGGTATCTACTACTCGGATAACCATAGTAATTCTAGAGCTAATACATGCAACAAAACCCGACTTCCGGAAGGAATGCATTTATTAGATAAAAAGGTCGACGCTGGCTCTACCCGTTGCTGCGATGATTCATGATAACTCATCGATTGCACGACCATCGTGCCGACGACGCATCATTCAAATTTCTTCCCTTTCAAATTTTGATAATAGGATAGTGGCCTACCATGGTAGTGACAGGTGACAGAGAATTAGGGTTTGATTCCGGAGAAGGATCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGTAGGCGTGCAAATTACCTAATCTTGACAGGGGGAGGTAATGACAATTAATAAAAATACCCGGCTCTATGAGTCTGATAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAG</gDNA_template>
            <first_frame> P  V  I  V  *  L  S  Q  R  L  S  H  A  C  V  S  M  N  K  F  R  L  *  N  C  E  *  L  I  K  L  I  I  V  C  L  M  V  S  T  T  R  I  T  I  V  I  L  E  L  I  H  A  T  K  P  D  F  R  K  E  C  I  Y  *  I  K  R  S  T  L  A  L  P  V  A  A  M  I  H  D  N  S  S  I  A  R  P  S  C  R  R  R  I  I  Q  I  S  S  L  S  N  F  D  N  R  I  V  A  Y  H  G  S  D  R  *  Q  R  I  R  V  *  F  R  R  R  I  L  R  N  G  Y  H  I  Q  G  R  Q  *  A  C  K  L  P  N  L  D  R  G  R  *  *  Q  L  I  K  I  P  G  S  M  S  L  I  I  G  M  S  T  I  *  I  P  *  R  G  S  I  G  G  Q  </first_frame>
            <second_frame>  Q  *  S  Y  D  C  L  K  D  *  V  M  H  V  *  V  *  T  N  S  D  C  E  T  A  N  D  S  L  N  *  L  *  F  V  *  W  Y  L  L  L  G  *  P  *  *  F  *  S  *  Y  M  Q  Q  N  P  T  S  G  R  N  A  F  I  R  *  K  G  R  R  W  L  Y  P  L  L  R  *  F  M  I  T  H  R  L  H  D  H  R  A  D  D  A  S  F  K  F  L  P  F  Q  I  L  I  I  G  *  W  P  T  M  V  V  T  G  D  R  E  L  G  F  D  S  G  E  G  S  *  E  T  A  T  T  S  K  E  G  S  R  R  A  N  Y  L  I  L  T  G  G  G  N  D  N  *  *  K  Y  P  A  L  *  V  *  *  L  E  *  V  Q  S  K  S  L  N  E  D  P  L  E  G  K </second_frame>
            <third_frame>   S  N  R  M  I  V  S  K  I  K  S  C  M  C  K  Y  E  Q  I  Q  T  V  K  L  R  M  T  H  *  I  N  Y  S  L  F  D  G  I  Y  Y  S  D  N  H  S  N  S  R  A  N  T  C  N  K  T  R  L  P  E  G  M  H  L  L  D  K  K  V  D  A  G  S  T  R  C  C  D  D  S  *  *  L  I  D  C  T  T  I  V  P  T  T  H  H  S  N  F  F  P  F  K  F  *  *  *  D  S  G  L  P  W  *  *  Q  V  T  E  N  *  G  L  I  P  E  K  D  P  E  K  R  L  P  H  P  R  K  A  V  G  V  Q  I  T  *  S  *  Q  G  E  V  M  T  I  N  K  N  T  R  L  Y  E  S  D  N  W  N  E  Y  N  L  N  P  L  T  R  I  H  W  R  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="120676" PGL_stop="123434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120676" e_stop="120851"/>
            <exon e_start="121345" e_stop="121680"/>
            <exon e_start="121885" e_stop="122138"/>
            <exon e_start="123399" e_stop="123434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.685" acc_prob="0.954" e_score="0.972"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.694"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="120676" e_stop="120851" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.685" acc_prob="0.954">
            <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="121345" e_stop="121680" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="0.917">
            <gDNA_exon_boundary e_start="121885" e_stop="122138" e_length="254"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="122139" i_stop="123398" i_length="1260"/>
          </intron>
          <exon e_serial="4" e_score="0.694">
            <gDNA_exon_boundary e_start="123399" e_stop="123434" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120676" stop="120851"/>
              <exon start="121345" stop="121680"/>
              <exon start="121885" stop="121958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120763" stop="120851"/>
              <exon start="121345" stop="121680"/>
              <exon start="121885" stop="122040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120782" stop="120851"/>
              <exon start="121345" stop="121680"/>
              <exon start="121885" stop="122138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120783" stop="120851"/>
              <exon start="121345" stop="121680"/>
              <exon start="121885" stop="121939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120783" stop="120851"/>
              <exon start="121345" stop="121554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120814" stop="120851"/>
              <exon start="121345" stop="121680"/>
              <exon start="121885" stop="122138"/>
              <exon start="123399" stop="123434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCCATTTTCTTTTTTCCAACAACAAAAAAAAAATATACAAAAAAATAATCAAATTCCCAACTAAACAAAAGAGAAAAACAAGAAAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAA : CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAG : GAGCATACTTGCCAGACATATGCAACAAGAACAAGAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTATAAAATTATTTTTACACCTTATTATAAAATAATATATATGAATAATTTCTTTTTACAAGAAGATATTAGAATTTTTTTCCATGTGACGTTTTAATTTTTTGTACCAATTATTTTTTCAGTGAAAATTTAATAAAGACTCTCCTTTTTTTTTAC : AAACAACATAAAATCAAAATTTTAAAACACAAAAAA</gDNA_template>
            <first_frame> F  L  H  F  L  F  S  N  N  K  K  K  I  Y  K  K  I  I  K  F  P  T  K  Q  K  R  K  T  R  K  I  N  G  F  I  N  E  I  I  F  D  P  F  F  Y  M  F  P  F  P  P  S  R  L  C  G  I  *  N :   *  G  K  M  *  E  F  T  K  *  *  L  C  I  C  N  F  I  N  W  K  K  V  C  I  R  K  S  K  K  T  K  R  *  L  N  *  *  *  I  *  M  Q  D  I  R  S  Y  G  S  K  H  E  G  T  H  *  N  R  *  M  Y  *  I  L  W  S  *  *  K  F  L  W  N  F  I  *  *  F  A  *  A  S  I  C  F  Q  I  M  C  P  C  L  L  S  T  M  P  Q  Y  C  *  P  L  L  Q  L  G  C  W  *  R :   S  I  L  A  R  H  M  Q  Q  E  Q  E  V  E  E  *  W  C  C  *  R  W  C  *  C  S  C  S  I  S  F  I  F  I  K  L  F  L  H  L  I  I  K  *  Y  I  *  I  I  S  F  Y  K  K  I  L  E  F  F  S  M  *  R  F  N  F  L  Y  Q  L  F  F  Q  *  K  F  N  K  D  S  P  F  F  L   : Q  T  T  *  N  Q  N  F  K  T  Q  K  </first_frame>
            <second_frame>  F  S  I  F  F  F  P  T  T  K  K  K  Y  T  K  K  *  S  N  S  Q  L  N  K  R  E  K  Q  E  K  *  M  G  S  S  M  K  S  S  L  I  L  F  F  T  C  S  L  F  L  Q  V  A  Y  A  V  Y  K   : T  E  V  K  C  E  S  L  P  N  S  D  C  A  F  A  I  S  S  T  G  K  R  C  V  L  E  K  A  K  K  P  K  D  D  L  I  S  S  E  Y  E  C  K  T  S  E  V  M  V  Q  N  M  K  E  H  I  E  T  D  E  C  I  E  S  C  G  L  N  R  N  F  F  G  I  S  S  D  D  L  L  E  P  R  F  V  S  K  L  C  A  P  A  C  Y  Q  Q  C  P  N  I  V  D  L  Y  F  N  L  A  A  G  E   : G  A  Y  L  P  D  I  C  N  K  N  K  K  L  K  S  S  G  A  A  E  D  G  V  D  A  P  A  P  S  P  S  F  L  *  N  Y  F  Y  T  L  L  *  N  N  I  Y  E  *  F  L  F  T  R  R  Y  *  N  F  F  P  C  D  V  L  I  F  C  T  N  Y  F  F  S  E  N  L  I  K  T  L  L  F  F  Y  :  K  Q  H  K  I  K  I  L  K  H  K  K </second_frame>
            <third_frame>   S  P  F  S  F  F  Q  Q  Q  K  K  N  I  Q  K  N  N  Q  I  P  N  *  T  K  E  K  N  K  K  N  K  W  V  H  Q  *  N  H  L  *  S  F  F  L  H  V  P  F  S  S  K  S  L  M  R  Y  I  K  :  L  R  *  N  V  R  V  Y  Q  I  V  I  V  H  L  Q  F  H  Q  L  E  K  G  V  Y  *  K  K  Q  K  N  Q  K  M  T  *  L  V  V  N  M  N  A  R  H  Q  K  L  W  F  K  T  *  R  N  T  L  K  Q  M  N  V  L  N  L  V  V  L  I  E  I  S  L  E  F  H  L  M  I  C  L  S  L  D  L  F  P  N  Y  V  P  L  L  V  I  N  N  A  P  I  L  L  T  F  T  S  T  W  L  L  V  K  :  E  H  T  C  Q  T  Y  A  T  R  T  R  S  *  R  V  V  V  L  L  K  M  V  L  M  L  L  L  H  L  L  H  F  Y  K  I  I  F  T  P  Y  Y  K  I  I  Y  M  N  N  F  F  L  Q  E  D  I  R  I  F  F  H  V  T  F  *  F  F  V  P  I  I  F  S  V  K  I  *  *  R  L  S  F  F  F  T :   N  N  I  K  S  K  F  *  N  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120770" stop="120851"/>
                    <exon start="121345" stop="121680"/>
                    <exon start="121885" stop="121988"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGSSMKSSLILFFTCSLFLQVAYAVYKTEVKCESLPNSDCAFAISSTGKRCVLEKAKKPKDDLISSEYECKTSEVMVQNMKEHIETDECIESCGLNRNFFGISSDDLLEPRFVSKLCAPACYQQCPNIVDLYFNLAAGEGAYLPDICNKNKKLKSSGAAEDGVDAPAPSPSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="145170" PGL_stop="150772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145170" e_stop="145270"/>
            <exon e_start="145345" e_stop="145385"/>
            <exon e_start="145503" e_stop="145555"/>
            <exon e_start="146758" e_stop="146796"/>
            <exon e_start="146904" e_stop="146973"/>
            <exon e_start="150443" e_stop="150772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145170" e_stop="145270" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.913">
            <gDNA_intron_boundary i_start="145271" i_stop="145344" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="145345" e_stop="145385" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="145386" i_stop="145502" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="145503" e_stop="145555" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.927" acc_prob="0.934">
            <gDNA_intron_boundary i_start="145556" i_stop="146757" i_length="1202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="146758" e_stop="146796" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="146797" i_stop="146903" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="146904" e_stop="146973" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.958">
            <gDNA_intron_boundary i_start="146974" i_stop="150442" i_length="3469"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="150443" e_stop="150772" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145170" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145196" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145214" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145220" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145222" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145223" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145231" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145232" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145238" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145252" stop="145270"/>
              <exon start="145345" stop="145385"/>
              <exon start="145503" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145527" stop="145555"/>
              <exon start="146758" stop="146796"/>
              <exon start="146904" stop="146973"/>
              <exon start="150443" stop="150772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAACTCAAAACCCTCACAAGTCCTCTTTCTCTTCTTTGCGCCTCTCATTCTTGGATTCACTTTCTGGGGTTTCACCTAATTTTCCATTCTTGAAAAGG : TTATAATGGCTGGTGTTCCTTCTAACCTTGAAAGAGAACAG : ATATTCTCTATGGCAGAGAAAGAGATGGAGTATAGAGTGGAGATGTTTAACAA : GCTTACGCATACATGCTTCAAAAAATGCGTCGAGAACAA : GTACAAGGACTCGGAGTTGAACATGGGTGAAAATAGTTGTATTGACCGATGCGTTTCAAAGTACTGGCAG : GTGACTAACCTTGTGGGGACGCTTCTTGGGAACACTCGACCCATGTAACATTTTCCCATTGTCTACTTCGTGGTGTTCGAATAATCTATCAGGGAGAACATTAAAGAAGAGATTGATAATCCTTCTCGTTCTAGTTCCATATTTGTTGTTCTCGATACATAGTATACATGTCTTTGACAACTGTTTGTGATGGTATTATCAAATTTGATGGAGGACTTGATGTTAAGAGTTGTGAGCATGTCTCTATAATAAGCTATGTACCCAAATCAAATCATATTTGGTCTCTGTGCAAGTTAAATCCACAACAAAGTTCATACTTATCATCTCTCA</gDNA_template>
            <first_frame> S  K  L  K  T  L  T  S  P  L  S  L  L  C  A  S  H  S  W  I  H  F  L  G  F  H  L  I  F  H  S  *  K  G :   Y  N  G  W  C  S  F  *  P  *  K  R  T   : D  I  L  Y  G  R  E  R  D  G  V  *  S  G  D  V  *  Q  :  A  Y  A  Y  M  L  Q  K  M  R  R  E  Q  :  V  Q  G  L  G  V  E  H  G  *  K  *  L  Y  *  P  M  R  F  K  V  L  A   : G  D  *  P  C  G  D  A  S  W  E  H  S  T  H  V  T  F  S  H  C  L  L  R  G  V  R  I  I  Y  Q  G  E  H  *  R  R  D  *  *  S  F  S  F  *  F  H  I  C  C  S  R  Y  I  V  Y  M  S  L  T  T  V  C  D  G  I  I  K  F  D  G  G  L  D  V  K  S  C  E  H  V  S  I  I  S  Y  V  P  K  S  N  H  I  W  S  L  C  K  L  N  P  Q  Q  S  S  Y  L  S  S  L  </first_frame>
            <second_frame>  Q  N  S  K  P  S  Q  V  L  F  L  F  F  A  P  L  I  L  G  F  T  F  W  G  F  T  *  F  S  I  L  E  K   : V  I  M  A  G  V  P  S  N  L  E  R  E  Q  :  I  F  S  M  A  E  K  E  M  E  Y  R  V  E  M  F  N  K :   L  T  H  T  C  F  K  K  C  V  E  N  K :   Y  K  D  S  E  L  N  M  G  E  N  S  C  I  D  R  C  V  S  K  Y  W  Q  :  V  T  N  L  V  G  T  L  L  G  N  T  R  P  M  *  H  F  P  I  V  Y  F  V  V  F  E  *  S  I  R  E  N  I  K  E  E  I  D  N  P  S  R  S  S  S  I  F  V  V  L  D  T  *  Y  T  C  L  *  Q  L  F  V  M  V  L  S  N  L  M  E  D  L  M  L  R  V  V  S  M  S  L  *  *  A  M  Y  P  N  Q  I  I  F  G  L  C  A  S  *  I  H  N  K  V  H  T  Y  H  L  S </second_frame>
            <third_frame>   K  T  Q  N  P  H  K  S  S  F  S  S  L  R  L  S  F  L  D  S  L  S  G  V  S  P  N  F  P  F  L  K  R  :  L  *  W  L  V  F  L  L  T  L  K  E  N  R :   Y  S  L  W  Q  R  K  R  W  S  I  E  W  R  C  L  T   : S  L  R  I  H  A  S  K  N  A  S  R  T   : S  T  R  T  R  S  *  T  W  V  K  I  V  V  L  T  D  A  F  Q  S  T  G  R :   *  L  T  L  W  G  R  F  L  G  T  L  D  P  C  N  I  F  P  L  S  T  S  W  C  S  N  N  L  S  G  R  T  L  K  K  R  L  I  I  L  L  V  L  V  P  Y  L  L  F  S  I  H  S  I  H  V  F  D  N  C  L  *  W  Y  Y  Q  I  *  W  R  T  *  C  *  E  L  *  A  C  L  Y  N  K  L  C  T  Q  I  K  S  Y  L  V  S  V  Q  V  K  S  T  T  K  F  I  L  I  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145252" stop="145270"/>
                    <exon start="145345" stop="145385"/>
                    <exon start="145503" stop="145555"/>
                    <exon start="146758" stop="146796"/>
                    <exon start="146904" stop="146973"/>
                    <exon start="150443" stop="150490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSILEKVIMAGVPSNLEREQIFSMAEKEMEYRVEMFNKLTHTCFKKCVENKYKDSELNMGENSCIDRCVSKYWQVTNLVGTLLGNTRPM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150577" stop="150771"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHICCSRYIVYMSLTTVCDGIIKFDGGLDVKSCEHVSIISYVPKSNHIWSLCKLNPQQSSYLSSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="150769" PGL_stop="146926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150769" e_stop="150452"/>
            <exon e_start="149848" e_stop="149842"/>
            <exon e_start="146975" e_stop="146926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.947" e_score="0.978"/>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="0.286"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="150769" e_stop="150452" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.947">
            <gDNA_intron_boundary i_start="150451" i_stop="149849" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="0.286">
            <gDNA_exon_boundary e_start="149848" e_stop="149842" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="149841" i_stop="146976" i_length="2866"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="146975" e_stop="146926" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150769" stop="150452"/>
              <exon start="149848" stop="149842"/>
              <exon start="146975" stop="146926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATGATAAGTATGAACTTTGTTGTGGATTTAACTTGCACAGAGACCAAATATGATTTGATTTGGGTACATAGCTTATTATAGAGACATGCTCACAACTCTTAACATCAAGTCCTCCATCAAATTTGATAATACCATCACAAACAGTTGTCAAAGACATGTATACTATGTATCGAGAACAACAAATATGGAACTAGAACGAGAAGGATTATCAATCTCTTCTTTAATGTTCTCCCTGATAGATTATTCGAACACCACGAAGTAGACAATGGGAAAATGTTACATGGGTCGAGTGTTCCCAAGAAGCGTCCCCACAAG : ACTTGGG : ACCTGCCAGTACTTTGAAACGCATCGGTCAATACAACTATTTTCACCCAT</gDNA_template>
            <first_frame> E  M  I  S  M  N  F  V  V  D  L  T  C  T  E  T  K  Y  D  L  I  W  V  H  S  L  L  *  R  H  A  H  N  S  *  H  Q  V  L  H  Q  I  *  *  Y  H  H  K  Q  L  S  K  T  C  I  L  C  I  E  N  N  K  Y  G  T  R  T  R  R  I  I  N  L  F  F  N  V  L  P  D  R  L  F  E  H  H  E  V  D  N  G  K  M  L  H  G  S  S  V  P  K  K  R  P  H  K  :  T  W   : D  L  P  V  L  *  N  A  S  V  N  T  T  I  F  T  H </first_frame>
            <second_frame>  R  *  *  V  *  T  L  L  W  I  *  L  A  Q  R  P  N  M  I  *  F  G  Y  I  A  Y  Y  R  D  M  L  T  T  L  N  I  K  S  S  I  K  F  D  N  T  I  T  N  S  C  Q  R  H  V  Y  Y  V  S  R  T  T  N  M  E  L  E  R  E  G  L  S  I  S  S  L  M  F  S  L  I  D  Y  S  N  T  T  K  *  T  M  G  K  C  Y  M  G  R  V  F  P  R  S  V  P  T  R :   L  G  :  T  C  Q  Y  F  E  T  H  R  S  I  Q  L  F  S  P   </second_frame>
            <third_frame>   D  D  K  Y  E  L  C  C  G  F  N  L  H  R  D  Q  I  *  F  D  L  G  T  *  L  I  I  E  T  C  S  Q  L  L  T  S  S  P  P  S  N  L  I  I  P  S  Q  T  V  V  K  D  M  Y  T  M  Y  R  E  Q  Q  I  W  N  *  N  E  K  D  Y  Q  S  L  L  *  C  S  P  *  *  I  I  R  T  P  R  S  R  Q  W  E  N  V  T  W  V  E  C  S  Q  E  A  S  P  Q   : D  L  G :   P  A  S  T  L  K  R  I  G  Q  Y  N  Y  F  H  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150637" stop="150452"/>
                    <exon start="149848" stop="149842"/>
                    <exon start="146975" stop="146959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHHKQLSKTCILCIENNKYGTRTRRIINLFFNVLPDRLFEHHEVDNGKMLHGSSVPKKRPHKTWDLPVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150708" stop="150505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGYIAYYRDMLTTLNIKSSIKFDNTITNSCQRHVYYVSRTTNMELEREGLSISSLMFSLIDYSNTTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="153917" PGL_stop="151351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="153917" e_stop="153899"/>
            <exon e_start="153814" e_stop="153709"/>
            <exon e_start="153517" e_stop="153432"/>
            <exon e_start="153300" e_stop="153112"/>
            <exon e_start="152743" e_stop="152579"/>
            <exon e_start="151668" e_stop="151555"/>
            <exon e_start="151360" e_stop="151351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.783" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.154" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="153917" e_stop="153899" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="153898" i_stop="153815" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="153814" e_stop="153709" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.783" acc_prob="0.983">
            <gDNA_intron_boundary i_start="153708" i_stop="153518" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="153517" e_stop="153432" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.154">
            <gDNA_intron_boundary i_start="153431" i_stop="153301" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="153300" e_stop="153112" e_length="189"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="153111" i_stop="152744" i_length="368"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="152743" e_stop="152579" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="152578" i_stop="151669" i_length="910"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="151668" e_stop="151555" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.905">
            <gDNA_intron_boundary i_start="151554" i_stop="151361" i_length="194"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="151360" e_stop="151351" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153917" stop="153899"/>
              <exon start="153814" stop="153709"/>
              <exon start="153517" stop="153432"/>
              <exon start="153300" stop="153112"/>
              <exon start="152743" stop="152579"/>
              <exon start="151668" stop="151555"/>
              <exon start="151360" stop="151351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153917" stop="153899"/>
              <exon start="153814" stop="153709"/>
              <exon start="153517" stop="153432"/>
              <exon start="153300" stop="153112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153484" stop="153432"/>
              <exon start="153300" stop="153112"/>
              <exon start="152743" stop="152579"/>
              <exon start="151668" stop="151557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAATCTTATTCGATCAG : GATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAG : GAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCAT : GCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAG : GTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAG : CTTTCGTTCCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACACAG : TTCATTGATG</gDNA_template>
            <first_frame> *  N  L  I  R  S   : G  W  *  S  *  T  L  L  L  W  L  D  E  E  Q  *  R  R  E  E  L  *  Y  K  L  G  F  H  S  P  R  V  L  E  N  R :   K  S  D  P  *  K  C  S  L  Q  L  W  N  N  V  A  R  S  F  E  W  K  A  Y  S  S  K  P   : C  T  *  S  N  S  R  E  E  F  F  D  A  Y  G  F  L  F  G  G  S  F  F  K  *  *  W  K  *  A  C  S  A  S  H  S  L  F  T  I  *  G  T  *  E  A  K  C  K  I  S  R  H  F  T  Y  V  S  S  E  R  N  R   : G  A  I  T  C  F  V  G  Y  S  T  W  N  *  N  P  T  S  A  I  I  I  D  S  N  G  *  S  M  L  E  K  G  S  Y  C  P  S  *  N  I  G  K  E  W  V  Q  G  *  *  R  N  C  Q  *   : A  F  V  P  N  V  D  K  S  D  A  G  N  L  E  F  *  E  A  W  *  C  C  F  P  S  Q  G  F  H  Y  C  Y  *  L  L  H  T   : V  H  *   </first_frame>
            <second_frame>  R  I  L  F  D  Q  :  D  G  N  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  K  T   : G  R  V  T  P  E  S  V  V  Y  S  F  G  T  M  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  R  G  K  N  F  L  M  L  M  D  S  C  L  E  G  H  F  S  N  D  D  G  S  E  L  V  R  L  A  T  R  C  L  Q  Y  E  A  R  E  R  P  N  A  K  S  L  V  T  S  L  M  S  L  Q  K  E  T  E  :  V  P  S  H  V  L  L  G  I  P  H  G  T  E  T  P  P  Q  P  L  L  L  T  P  M  G  E  A  C  L  R  K  D  L  T  A  L  H  E  I  L  E  K  S  G  Y  K  D  D  E  G  I  A  N  E  :  L  S  F  Q  M  W  T  N  Q  M  Q  E  T  L  N  S  K  K  H  G  D  A  A  F  R  A  K  D  F  I  T  A  I  D  C  Y  T  Q  :  F  I  D  </second_frame>
            <third_frame>   E  S  Y  S  I  R :   M  V  I  L  D  S  L  A  L  A  *  *  R  T  V  E  T  G  R  V  I  V  Q  T  W  L  S  L  P  Q  S  T  *  K  Q  :  E  E  *  P  L  K  V  *  F  T  A  L  E  Q  C  C  *  I  F  *  V  E  S  I  F  L  Q  A  M :   H  L  I  *  F  E  G  R  I  F  *  C  L  W  I  L  V  W  R  V  I  F  Q  M  M  M  E  V  S  L  F  G  *  P  L  V  V  Y  N  M  R  H  V  R  G  Q  M  Q  N  L  S  S  L  H  L  C  L  F  R  K  K  Q  R :   C  H  H  M  F  C  W  V  F  H  M  E  L  K  P  H  L  S  H  Y  Y  *  L  Q  W  V  K  H  A  *  E  R  I  L  L  P  F  M  K  Y  W  K  R  V  G  T  R  M  M  K  E  L  P  M  S :   F  R  S  K  C  G  Q  I  R  C  R  K  P  *  I  L  R  S  M  V  M  L  L  S  E  P  R  I  S  L  L  L  L  T  A  T  H  S :   S  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="153916" stop="153899"/>
                    <exon start="153814" stop="153709"/>
                    <exon start="153517" stop="153432"/>
                    <exon start="153300" stop="153112"/>
                    <exon start="152743" stop="152579"/>
                    <exon start="151668" stop="151555"/>
                    <exon start="151360" stop="151352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLKTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGSELVRLATRCLQYEARERPNAKSLVTSLMSLQKETEVPSHVLLGIPHGTETPPQPLLLTPMGEACLRKDLTALHEILEKSGYKDDEGIANELSFQMWTNQMQETLNSKKHGDAAFRAKDFITAIDCYTQFID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 257 chains have been computed
$ 
$ memory statistics:
$ 1374848 bytes spliced alignments in total
$ 168 spliced alignments have been stored
$ 8183 bytes was the average size of a spliced alignment
$ 39672 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1525 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 292 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:38:26
-->
