<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:21:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320715" ref_strand="+" ref_description="SGN-U320715        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, contains Pfam profile PF00226 DnaJ domain | chr2:15049289-15050646 FORWARD | Aliases: T20F21.1, T20F21_1(evalue: 1e-40, score=162) genbank/nr: gi|18403957|ref|NP_565824.1| DnaJ domain-containing protein [Arabidopsis thaliana] gi|20197532|gb|AAM15117.1| expressed protein [Arabidopsis thaliana] gi|20197993|gb|AAM15345.1| expressed protein [Arabidopsis thaliana] gi|21536803|gb|AAM61135.1| DNAJ protein-like [Arabidopsis thaliana](evalue: 8e-39, score=162)">
      <seq>tacttcgttatattcaagctcttaggtgaagatcggaaaaaatggtcgcaccattagtagcaggaatggctatagccgctgctgcatatgcttcaaggtatggaatccaggcatggcaagcattcaaggccagacctcccactgtgagaatgcgcaagttttatgaaggaggttttcagcctaaaatgaacagaagggaagcagctctgattcttggagtcagggaaaacactgaagcaaataaagtgagggaagcacataggaaggtgatggtagctaaccatccagatgcaggaggtagtcactaccttgcttctaaaataaacgaggcgaaagacactttgcttggacagacgaagaacaatggatccgcgttctaggctacacgaaatttttgctggtgaaaggctctgcttacacaccatcctctccagacgttatgtcgttatcgtcatgtggcatttcactctatttgtataggtaatggggctgaggaattccagaaatattactaatagaaccagaaaatgtgtatacttccaaaatttgaatcacgtggctttgaagaccnnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="+" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="268" stop="2152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="569" g_stop="747" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="223" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="748" i_stop="1338" i_length="591">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1339" g_stop="1515" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="400" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1516" i_stop="1682" i_length="167">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1683" g_stop="1860" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="578" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="589"/>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="+" ref_id="SGN-U320715" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="569" e_stop="747"/>
          <exon e_start="1339" e_stop="1515"/>
          <exon e_start="1683" e_stop="1860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAGGTCTGTTCTGTCATTCATGTTAACGCGTTGCTGCAATTCCTATATGAGACGTTTTTTAAGTACTACACAAGTTAAATCTATCTCCTTGAATCAAAGGTCTATAAGAAACACTCTTCATAACCTCCCTAGACCCCACGTCTGGGAATCATGTTGGATATGTTGTTGCTACATAGGTTAAGTCGTTATATGAATACAATCTCTTCTCTCTACATTCTGAAAAATCCTTCGTTCTACATTGTGAGCATATTGGTCTGCTCGTAGTACTTCACTATCAAATCCACTTTCTCTGAAGGTACAGTTAGTACTATTCGTCTCAATTGTATGGAGGTAAACTACATAACACTATCCTTGAACATGTCAGGTTTACACCACATTTTTGGGGTTTTTGACTTTCGTTCTAACGCTATTATTTGTTCATGCTTGTATAGTGTAATGATATCTGAGTTCTTTGAGTTTTGGTCTAACGCTATTATTTGTTTGTGTTTATATAGTATAATGATATTCGATATATAAGAACAGTAGCACGAGTAGTCTTTTCTCCTCTGTTTTCCTTTCTGGATTTTGTTATATTGACATCAATATCTTCAACAGGGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACACCATCCTCTCCAGACGTTATGTCGTTATCGTCATGTGGCATTTCACTCTATTTGTATAGGTAATGGGGCTGAGGAATTCCAGAAATATTACTAATAGAACCAGAAAATGTGTATACTTCCAAAATTTGAATCACGTGGCTTTGAAGACCAGTTGCCA</genome_strand>
        <mrna_strand>GTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTG.......................................................................................................................................................................GTGAAAGGCTCTGCTTACACACCATCCTCTCCAGACGTTATGTCGTTATCGTCATGTGGCATTTCACTCTATTTGTATAGGTAATGGGGCTGAGGAATTCCAGAAATATTACTAATAGAACCAGAAAATGTGTATACTTCCAAAATTTGAATCACGTGGCTTTGAAGACCNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337198" ref_strand="+" ref_description="SGN-U337198        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, contains Pfam profile PF00226 DnaJ domain | chr2:15049289-15050646 FORWARD | Aliases: T20F21.1, T20F21_1(evalue: 2e-35, score=146) genbank/nr: gi|18403957|ref|NP_565824.1| DnaJ domain-containing protein [Arabidopsis thaliana] gi|20197532|gb|AAM15117.1| expressed protein [Arabidopsis thaliana] gi|20197993|gb|AAM15345.1| expressed protein [Arabidopsis thaliana] gi|21536803|gb|AAM61135.1| DNAJ protein-like [Arabidopsis thaliana](evalue: 1e-33, score=146)">
      <seq>gcaagcattcaaggccagacctcccactgtgagaatgcgcaagttttatgaaggaggttttcagcctaaaatgaacagaagggaagcagctctgattcttggagtcagggaaaacactgaagcaaataaagtgagggaagcacataggaaggtgatggtagctaaccatccagatgcaggaggtagtcactaccttgcttctaaaataaacgaggcgaaagacactttgcttggacagacgaagaacaatggatccgcgttctaggctacacgaaatttttgctggtacttagacatacccaaatccaagagtctttagtcaaaaaattagacactagaacattgagaatacatcataagatgtacaagttacaactagtttgttttaattctaagcaagcttgagaagtcgattatatgaattctcactattcatgtggcattttgggtaggtgaaaggctctgcttacacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="+" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="340" stop="2003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="640" g_stop="747" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="748" i_stop="1338" i_length="591">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1339" g_stop="1703" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="473" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="484"/>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="+" ref_id="SGN-U337198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="640" e_stop="747"/>
          <exon e_start="1339" e_stop="1703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAGGTCTGTTCTGTCATTCATGTTAACGCGTTGCTGCAATTCCTATATGAGACGTTTTTTAAGTACTACACAAGTTAAATCTATCTCCTTGAATCAAAGGTCTATAAGAAACACTCTTCATAACCTCCCTAGACCCCACGTCTGGGAATCATGTTGGATATGTTGTTGCTACATAGGTTAAGTCGTTATATGAATACAATCTCTTCTCTCTACATTCTGAAAAATCCTTCGTTCTACATTGTGAGCATATTGGTCTGCTCGTAGTACTTCACTATCAAATCCACTTTCTCTGAAGGTACAGTTAGTACTATTCGTCTCAATTGTATGGAGGTAAACTACATAACACTATCCTTGAACATGTCAGGTTTACACCACATTTTTGGGGTTTTTGACTTTCGTTCTAACGCTATTATTTGTTCATGCTTGTATAGTGTAATGATATCTGAGTTCTTTGAGTTTTGGTCTAACGCTATTATTTGTTTGTGTTTATATAGTATAATGATATTCGATATATAAGAACAGTAGCACGAGTAGTCTTTTCTCCTCTGTTTTCCTTTCTGGATTTTGTTATATTGACATCAATATCTTCAACAGGGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACA</genome_strand>
        <mrna_strand>GCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343512" ref_strand="+" ref_description="SGN-U343512        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, contains Interpro entry IPR000379 | chr5:694980-697635 FORWARD | Aliases: F9G14.280, F9G14_280(evalue: 2e-21, score=99.8) genbank/nr: gi|15242576|ref|NP_195917.1| esterase/lipase/thioesterase family [Arabidopsis thaliana] gi|11357915|pir||T48318 hypothetical protein F9G14.280 - Arabidopsis thaliana gi|7413572|emb|CAB86051.1| putative protein [Arabidopsis thaliana] gi|13605549|gb|AAK32768.1| AT5g02970/F9G14_280 [Arabidopsis thaliana] gi|30102478|gb|AAP21157.1| At5g02970/F9G14_280 [Arabidopsis thaliana](evalue: 2e-19, score=99.8)">
      <seq>tctccactaccccttttccggccaccgtgcaccgccactctcctccgcaaaatcaccggaacacggcggtgatcttccttcattcctcactttatcagtacaatcctacatatagtttttctaacactaaaatagatagtcagtctaacagttaccggaaaactcgaagtttatgttcatatttgcttcgtaatgtgtgtttgtatgtgtaaacagctcaactgaaaactcgtgtagctggtggaatttataggtgaagcacgtttgatggtgaaaaaacgatgaactacagctgatcaactagatatatattgagagataagacgtacaatggcggatgttgcagttgcgaagtcatggagagacgagctagcgagtttagtggaggatagtggaataaggtttgccggagaaatctctgctccgacgtattctacgccggcgtttgaggagaagagatcggtgtatgagtcgccggcgattgaggaggttgtggcggagccggagagttttaaggaccaaatcgaaggtttcgcgaaggcttggggagaaatgttgctggaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="7846" stop="6679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7546" g_stop="6979" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U343512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7546" e_stop="6979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCACTACCCCTTTTCCGGCCACCGTGCACCGCCACTCTCCTCCGCAAAATCACCGGAACACGGCGGTGATCTTCCTTCATTCCTCACTTTATCAGTACAATCCTACATATAGTTTTTCTAACACTAAAATAGATAGTCAGTCTAACAGTTACCGGAAAACTCGAAGTTTATGTTCATATTTGCTTCGTAATGTGTGTTTGTATGTGTAAACAGCTCAACTGAAAACTCGTGTAGCTGGTGGAATTTATAGGTGAAGCACGTTTGATGGTGAAAAAACGATGAACTACAGCTGATCAACTAGATATATATTGAGAGATAAGACGTACAATGGCGGATGTTGCAGTTGCGAAGTCATGGAGAGACGAGCTAGCGAGTTTAGTGGAGGATAGTGGAATAAGGTTTGCCGGAGAAATCTCTGCTCCGACGTATTCTACGCCGGCGTTTGAGGAGAAGAGATCGGTGTATGAGTCGCCGGCGATTGAGGAGGTTGTGGCGGAGCCGGAGAGTTTTAAGGACCAAATCGAAGGTTTCGCGAAGGCTTGGGGAGAAATGTTGCTGGAATTGA</genome_strand>
        <mrna_strand>TCTCCACTACCCCTTTTCCGGCCACCGTGCACCGCCACTCTCCTCCGCAAAATCACCGGAACACGGCGGTGATCTTCCTTCATTCCTCACTTTATCAGTACAATCCTACATATAGTTTTTCTAACACTAAAATAGATAGTCAGTCTAACAGTTACCGGAAAACTCGAAGTTTATGTTCATATTTGCTTCGTAATGTGTGTTTGTATGTGTAAACAGCTCAACTGAAAACTCGTGTAGCTGGTGGAATTTATAGGTGAAGCACGTTTGATGGTGAAAAAACGATGAACTACAGCTGATCAACTAGATATATATTGAGAGATAAGACGTACAATGGCGGATGTTGCAGTTGCGAAGTCATGGAGAGACGAGCTAGCGAGTTTAGTGGAGGATAGTGGAATAAGGTTTGCCGGAGAAATCTCTGCTCCGACGTATTCTACGCCGGCGTTTGAGGAGAAGAGATCGGTGTATGAGTCGCCGGCGATTGAGGAGGTTGTGGCGGAGCCGGAGAGTTTTAAGGACCAAATCGAAGGTTTCGCGAAGGCTTGGGGAGAAATGTTGCTGGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341540" ref_strand="+" ref_description="SGN-U341540        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribonuclease P family protein, similar to Ribonuclease P protein subunit p29 (EC 3.1.26.5) (hPOP4) (Swiss-Prot:O95707) (Homo sapiens) | chr2:17963062-17965118 FORWARD | Aliases: F14B2.13(evalue: 1e-22, score=103) genbank/nr: gi|18406178|ref|NP_565993.1| expressed protein [Arabidopsis thaliana] gi|20197152|gb|AAC64308.2| expressed protein [Arabidopsis thaliana] gi|21554179|gb|AAM63258.1| unknown [Arabidopsis thaliana](evalue: 1e-20, score=103)">
      <seq>agcaccctgcgcgtcttcttcttcttcttcttccttctccggcgaacgcgaacccagaccagtccatctcgccatcgccgtcgccgtcgccgtgagataatcgtgagacatattattaccaaatataaagcttgaaggagagaggggagcacaacaatggcgaatgaaacaatggctgaacaacaaaagaaacgaacgatggaggcattagagcgaagatttgctcaagcaaaagctgaaattcatcaacagcagcacaagaacaagagagtcgctgttactacaacaaaaactctagctgaaaacaacattggagtcaccacccagagtatcaattcttcgccttcgccactcaaatcaacgactacttcctcagctccgtcatccaaaaaaggccatatatctttttctggccatacatctgctcaagatgttgaactaaataatccagcataccttcagatatcccattcagtagacgataatcttctgaaaattaccactgagatttctggtaaaaacacgactgctaacgatattttgcacgatcttctccaacatggtgattcagctcagaaatatatgcaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="+" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="9491" stop="12392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9791" g_stop="9903" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9904" i_stop="10564" i_length="661">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10565" g_stop="10845" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="394" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10846" i_stop="11708" i_length="863">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11709" g_stop="11744" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="430" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11745" i_stop="11839" i_length="95">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11840" g_stop="11916" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="507" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11917" i_stop="12009" i_length="93">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12010" g_stop="12092" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="590" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="+" ref_id="SGN-U341540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9791" e_stop="9903"/>
          <exon e_start="10565" e_stop="10845"/>
          <exon e_start="11709" e_stop="11744"/>
          <exon e_start="11840" e_stop="11916"/>
          <exon e_start="12010" e_stop="12092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCCTGCGCGTCTTCTTCTTCTTCTTCTTCCTTCTCCGGCGAACGCGAACCCAGACCAGTCCATCTCGCCATCGCCGTCGCCGTCGCCGTGAGATAATCGTGAGACATATGTATTTATTTGAATTTGACAACTTGTATTTTAAATAATATTTGTGGATTTGTTGATATTTGCTTTCTTTCTAATCGGTCTGCTGAAACAAACAGAAGTACTGCTATATATATATATACATATTAATCACTGAATACAAGTTACAATGTAGAATACGCACAACAAAGTAAGGAGAGATTAACCGTAACCAGAAAGGGATGAGATACAAGACTACAGAAAGGAGATGAGAGGATTAGAAAGCCTAAGCTTCCACATAATAGTTTGCGTTACCGTTTGTTCCAACTCCTAGTCTTTTTGAGCGAATGGTGAATAATATTGTAGATTGTTGATATTTGGTTTCTTAAAGAGTTTTTCATCTAACTGTTATGCATAACTTACTTATAGGATAGGTGATATTGCCGAGCATTCATATTTGTATTTTCCACTTTTCAGTTTTCATAATGCTCAATAACTGTAATCAAAATCCCACACCATCTGTTTACAGAAGTGAATGCTTAGCTCCATTCATTTGTTTGCGATAATTAGGATATTTATAGTCATTGTTAAATCATATAAGATTTGTCTGGATTGTATCTTGGCCATTTAAGTGAATTGACCCAAACATTCTCATATCTATCAATTTAACACAATTTTGCTTAATTTTCAATTGTTATTATTATTAGTATTACCAAATATAAAGCTTGAAGGAGAGAGGGGAGCACAACAATGGCGAATGAAACAATGGCTGAACAACAAAAGAAACGAACGATGGAGGCATTAGAGCGAAGATTTGCTCAAGCAAAAGCTGAAATTCATCAACAGCAGCACAAGAACAAGAGAGTCGCTGTTACTACAACAAAAACTCTAGCTGAAAACAACATTGGAGTCACCACCCAGAGTATCAATTCTTCGCCTTCGCCACTCAAATCAACGACTACTTCCTCAGCTCCGTCATCCAAAAAAGGTTTCCTCTTTTATTTTTTTTCTCTGTTTCACTAGTTTTTAATATTTATCAGTCAACTATTGTGGCAGAGCCAAAATATTCATTAAAGGGTTCAAAATGAAGAATTAGGCCAAGGGGATAAAAAAATGTTTTTAGCCTTGTTTGTATATACAGGGTAATTTCTGTTGAATAAACCCCTTGCTTCTACCTGGCTCCACTCCTGAATTCAAGGAATCCTCTATATTCATGTTGTCTATGTTAATAATAGAATTCAACGTATTTTGTATTTTATGCCTGGATATCATAACCAGTATCTCGTTCATGTCTGTGCTTGCATTTGTTCACTCTCTTAGATGACAAAGTAGTTCTGCAAGTTTGAATTAGGTTCAAATATTCACCAAATTCAAATTTCTGTGCGAGATGCCCCGAATGCTCAATTGCTATACTTGAAGCCAATTCATATCCTTCTGTGATTCAAATAGGGTGAATATTATTATTGTAACAATCCTTGCTTGTTCTAGAATTGACTTAGCCATGAAAACAACTTCAATAATTCCATCACCAATTCTTGACTTTGCGCCAACTCAACCATCAAATTTGCAATCTGATTTCAATATATGGTTGCATCATCATTTCTGACATTGACATCCCTGTTAGGGTTCTGAAATCGGTGCTAAACTGTGAATTTTTCTTCTGATATTCTCTTTGATTTATCTGTAAACTTTTGGCATCCAAAAGCAGTGTAACAGTTGGCGTTTTCCAGGAATGTTAGTTAGACATTTTAATGTGATCCCTCTTAATTTCATCCTCCAAAAATAAAAATAAAAATAAAATGAACCCTTATTGATTTATCTCATCCAAACATTTTCCTGGTTTATTTGTAGGCCATATATCTTTTTCTGGCCATACATCTGCTCAAGGTACAACATTTCTCCGTATGCTTCTCTTGCATTTTATCTATAGAAAGGTATACATGAGACTAATCCAGGATGCTAAATTTTGTCCTACCACGTAGATGTTGAACTAAATAATCCAGCATACCTTCAGATATCCCATTCAGTAGACGATAATCTTCTGAAAATTACCACTGAGGTAAGAATAAACGTGATCAGTATGATGTTTCAAGGATGCACACAGCACACTATTAGTAAGTCGTTCATTGCTCATCCTGTTTGTTCGTTGCAGATTTCTGGTAAAAACACGACTGCTAACGATATTTTGCACGATCTTCTCCAACATGGTGATTCAGCTCAGAAATATATGCAGGG</genome_strand>
        <mrna_strand>AGCACCCTGCGCGTCTTCTTCTTCTTCTTCTTCCTTCTCCGGCGAACGCGAACCCAGACCAGTCCATCTCGCCATCGCCGTCGCCGTCGCCGTGAGATAATCGTGAGACATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACCAAATATAAAGCTTGAAGGAGAGAGGGGAGCACAACAATGGCGAATGAAACAATGGCTGAACAACAAAAGAAACGAACGATGGAGGCATTAGAGCGAAGATTTGCTCAAGCAAAAGCTGAAATTCATCAACAGCAGCACAAGAACAAGAGAGTCGCTGTTACTACAACAAAAACTCTAGCTGAAAACAACATTGGAGTCACCACCCAGAGTATCAATTCTTCGCCTTCGCCACTCAAATCAACGACTACTTCCTCAGCTCCGTCATCCAAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATATATCTTTTTCTGGCCATACATCTGCTCAAG...............................................................................................ATGTTGAACTAAATAATCCAGCATACCTTCAGATATCCCATTCAGTAGACGATAATCTTCTGAAAATTACCACTGAG.............................................................................................ATTTCTGGTAAAAACACGACTGCTAACGATATTTTGCACGATCTTCTCCAACATGGTGATTCAGCTCAGAAATATATGCAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324347" ref_strand="+" ref_description="SGN-U324347        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | myosin heavy chain-related, low similarity to myosin heavy chain (Rana catesbeiana) GI:4249701 | chr2:15588486-15592265 REVERSE | Aliases: T2N18.16, T2N18_16(evalue: 2e-137, score=487) genbank/nr: gi|18076679|emb|CAC84774.1| P70 protein [Nicotiana tabacum](evalue: 0, score=906)">
      <seq>gagagggagtgagaggagagtgagaaaaattaaagagaaatagtgtgtggtagtgtttttcatggggaactgtgtacactattactctcctctccttctcaggggttattgtaagctaaaatcttgagctcttcacctcactttttttctcctcttttaagggtgaactttagtacaaagctcatttagtttctcatttctacattttgctgctgagaggaaattgatatgcagacaccaaaaggaaggactgtttctgtggaagtgcctcaaaggatatctgctgctacactaaagacagctcgaaagctcaggactccagggtcagatgttgattctgtttcatctccgaatccagccaacaggacacctaaagataggagtccgaaagttgtttgtcgccggtcaccacggagtccagtgatagagaagaagcgtcctgtcaaagcatctgacttggaaacgcagcttgctcaactccaagatgagctaaagaaggcgaaggaccaactcagttcttctgaatcattgaagaaaagggctcaacaggatgctgatgaagctaaaaagcagcttgtggtcatgtcaggaaagctcgaggactctaagaagcagctgcttgatctctcagattcagaagaagctcgactgctggagttgcgcaagatatcacaggatcgagaccgagcatggcaatctgagcttgaggctatccagaagcagcatgagttggactctgctgctttggcctctgccatgaatgaaatacagaaacttaaacttcagctggaccgagtggctgattgtgaagccgctcaagctcatcatgctgagtcagcttatgttgagatacaaagcttaaggattgaacttacaaagacccttacattggttgataaactgagaaaccagcttaacgatagcaaggaatctgaggcttgttcatttgaagaagtgagcaaagctcagatgcagctggaagtggccaagataaccgaggatactctacgttctgaaggtttgaaagcaatggaggcttgcaggaccttgtctttggagttggaaaaatcaaaggatcgagtagcttcattggaggagcttgtcagaaaactccagtctggtccagtagactcttccgaaagttctgtagctgctgaaggaaacagctcaaatgtagaagctgataaactaaacattgagctgagtaccatccaagttgaggtaagtcaattaagagctgctttggaggattccgagagaaagtatcaggaagaatacatccagaacaccttgcagacacgaagtgcttatgaactggtggagcgcacaaaatccgaatcacttcagagggaggctgaatgggaaagaaaactaaatgaagcaaaatcggaagtggaagagttgaaagaaaaactgatgaatgttgaagctcaacttgttgatatttcagatgtgaataaggggctaagtctgcatgttgagcaaatgcagtcaactgataaagagtttgagttagctgctcaactaaagaactcagagtcagttttgggagatctgagagaaaatctattagataaagagacagagttgctgagtcttatggaggagaatgaacagttgaagtcggaaatcagtaagagggaatcggagagtaccaaagttaacaacgaggcacttgccttagtagaagaagcaaaaactgcagaaagagaggccctgatgaagctgggagatttgacggaggaagcagacaaaagcagcagaaaggtaactcgtgtcactgacgagctgaatgcagcacaggctgcaaactcggagatcgaaaccgagctaaggaggttaaaagtgcaatgtgatcaatggaggaaggctgctgaagcagctgcatctatgctttcaactggaaacaacgggaaatatgtcgagagaacaggttctttagactaccacactatcggtggaaagcttggttcaccactcttggatgacttggatgatgactcgccaaagaagaagaacaacaacatgttgaagaaactcggttttttattgaaaaagggacagaagtaaataacgcgctatcgtgcaggttgctttcacatgatcattgttccaattcttcagtaatcttgatcatgtaaacatttttcatcatttgttaataaatctactaagtttccttctcaggacttgctgagctgattcagccttcatggaattaatcgttttcgcggatttttgtatagctgtttggaaatctccagtttgtatggcaattgttatttttagatacagactgttgtattttccaagtatttgttgcaagtgtaatgatagctatgagagatgattaatggtaaaatttgctctttcatgtcatagatgacattttttataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="+" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="18563" stop="34194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18867" g_stop="18952" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="248" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18953" i_stop="19569" i_length="617">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19570" g_stop="19750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="429" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19751" i_stop="19878" i_length="128">
            <donor d_prob="0.597" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19879" g_stop="21841" g_length="1963"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="2392" r_length="1963" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21842" i_stop="22590" i_length="749">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.296" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22591" g_stop="22609" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="2393" r_stop="2411" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="+" ref_id="SGN-U324347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2249</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18867" e_stop="18952"/>
          <exon e_start="19570" e_stop="19750"/>
          <exon e_start="19879" e_stop="21841"/>
          <exon e_start="22591" e_stop="22609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACTTTAGTACAAAGCTCATTTAGTTTCTCATTTCTACATTTTGCTGCTGAGAGGAAATTGATATGCAGACACCAAAAGGAAGGTATTTTGCTTTGTTTGTCATCCGTAAACGTAGATAAATTTGTCAGTTCAAGAGTGTTTCAACTAAATAAGTTATCAACTACACTTTTTCATATTAAAGTGCAGTGCATTCATTCTCTAAGTCGAAGGAAATTGTTCGTCTAGAACTCAGTGGTCTTTTAGGCAAGAGTTAATACTGTTGAACTTTTGAAGAAATTTTTCTCGAAATGCTCGTAACTATACTATATCATGACATTCACATGGTATCGAGGTTGGAGATTGGCAGATCCATCTTTTTCTGTTAGGAAAAAAGAATTTAAGTGATGTGGCTTTGCAAGAAAGAAGTTAAAGCACTAGATCAGCTTAAGAAATGTCATATTAAAATTCTGTAACATATTAGTACTACTAATGAAATGGCTTTTAGACTCTTGATGTGTTCTAAATGAAGCCATTGGTGAAGTCTTCGTCAAAATATTTGGTGTGTTGTGCGATAAAAAGGAAACTTCACTTACATTATTAAAAATTACACGAATTGTACTTATTGGCGAGTCTGTACCGTCTATTTTGAGAAATAGAATATTATCATTATCTGCTCTAGTTGTTTAACTAACTTGTTCTCTTTCTCCCATTCTGCTGAAGGACTGTTTCTGTGGAAGTGCCTCAAAGGATATCTGCTGCTACACTAAAGACAGCTCGAAAGCTCAGGACTCCAGGGTCAGATGTTGATTCTGTTTCATCTCCGAATCCAGCCAACAGGACACCTAAAGATAGGAGTCCGAAAGTTGTTTGTCGCCGGTCACCACGGAGTCCAGTGATAGAGGTGCTTGAGTTATGTTATGTGTAAAATGTGCTAGCCACTTGTTTCTGTTTCTAATTATTCGTTCTTTTCGCTGTTAAAGGTACTTATAATATTATTCTAATGCTCAATGTTCTAATTTGACAACATAGAAGAAGCGTCCTGTCAAAGCATCTGACTTGGAAACGCAGCTTGCTCAACTCCAAGATGAGCTAAAGAAGGCGAAGGACCAACTCAGTTCTTCTGAATCATTGAAGAAAAGGGCTCAACAGGATGCTGATGAAGCTAAAAAGCAGCTTGTGGTCATGTCAGGAAAGCTCGAGGACTCTAAGAAGCAGCTGCTTGATCTCTCAGATTCAGAAGAAGCTCGACTGCTGGAGTTGCGCAAGATATCACAGGATCGAGACCGAGCATGGCAATCTGAGCTTGAGGCTATCCAGAAGCAGCATGAGTTGGACTCTGCTGCTTTGGCCTCTGCCATGAATGAAATACAGAAACTTAAACTTCAGCTGGACCGAGTGGCTGATTGTGAAGCCGCTCAAGCTCATCATGCTGAGTCAGCTTATGTTGAGATACAAAGCTTAAGGATTGAACTTACAAAGACCCTTACATTGGTTGATAAACTGAGAAACCAGCTTAACGATAGCAAGGAATCTGAGGCTTGTTCATTTGAAGAAGTGAGCAAAGCTCAGATGCAGCTGGAAGTGGCCAAGATAACCGAGGATACTCTACGTTCTGAAGGTTTGAAAGCAATGGAGGCTTGCAGGACCTTGTCTTTGGAGTTGGAAAAATCAAAGGATCGAGTAGCTTCATTGGAGGAGCTTGTCAGAAAACTCCAGTCTGGTCCAGTAGACTCTTCCGAAAGTTCTGTAGCTGCTGAAGGAAACAGCTCAAATGTAGAAGCTGATAAACTAAACATTGAGCTGAGTACCATCCAAGTTGAGGTAAGTCAATTAAGAGCTGCTTTGGAGGATTCCGAGAGAAAGTATCAGGAAGAATACATCCAGAACACCTTGCAGACACGAAGTGCTTATGAACTGGTGGAGCGCACAAAATCCGAATCACTTCAGAGGGAGGCTGAATGGGAAAGAAAACTAAATGAAGCAAAATCGGAAGTGGAAGAGTTGAAAGAAAAACTGATGAATGTTGAAGCTCAACTTGTTGATATTTCAGATGTGAATAAGGGGCTAAGTCTGCATGTTGAGCAAATGCAGTCAACTGATAAAGAGTTTGAGTTAGCTGCTCAACTAAAGAACTCAGAGTCAGTTTTGGGAGATCTGAGAGAAAATCTATTAGATAAAGAGACAGAGTTGCTGAGTCTTATGGAGGAGAATGAACAGTTGAAGTCGGAAATCAGTAAGAGGGAATCGGAGAGTACCAAAGTTAACAACGAGGCACTTGCCTTAGTAGAAGAAGCAAAAACTGCAGAAAGAGAGGCCCTGATGAAGCTGGGAGATTTGACGGAGGAAGCAGACAAAAGCAGCAGAAAGGTAACTCGTGTCACTGACGAGCTGAATGCAGCACAGGCTGCAAACTCGGAGATCGAAACCGAGCTAAGGAGGTTAAAAGTGCAATGTGATCAATGGAGGAAGGCTGCTGAAGCAGCTGCATCTATGCTTTCAACTGGAAACAACGGGAAATATGTCGAGAGAACAGGTTCTTTAGACTACCACACTATCGGTGGAAAGCTTGGTTCACCACTCTTGGATGACTTGGATGATGACTCGCCAAAGAAGAAGAACAACAACATGTTGAAGAAACTCGGTTTTTTATTGAAAAAGGGACAGAAGTAAATAACGCGCTATCGTGCAGGTTGCTTTCACATGATCATTGTTCCAATTCTTCAGTAATCTTGATCATGTAAACATTTTTCATCATTTGTTAATAAATCTACTAAGTTTCCTTCTCAGGACTTGCTGAGCTGATTCAGCCTTCATGGAATTAATCGTTTTCGCGGATTTTTGTATAGCTGTTTGGAAATCTCCAGTTTGTATGGCAATTGTTATTTTTAGATACAGACTGTTGTATTTTCCAAGTATTTGTTGCAAGTGTAATGATAGCTATGAGAGATGATTAATGGTAAAATTTGCTCTTTCATGTCATAGATGACATTTTTTTTTATCTATCTTTGCTGTGTAGAGTCCCACATTGGCCCTTTTAGTGGATGAGTGGTGTCTTTGATATGACTTGAGCTGATTTTCACATCTCGAATTAGTTTTTGGGTTGAATTTAACCTAATATTCATTTTTTAATATAATACCACAGAGCAGGACTCATCTCAATTTTCGGTTCTAATATCGCGTTTCCATATTAATTTGTTTACGTGTCATATGTCCAACCACAAGTGTATGAAGGGGTGTTAAGAGTCTCACATCGGCCCTTTAAGGGATAGACAGGGTAATTTTCATAAGTCATCTTTTGAGTCATTTCAATTCTCGGTTCTAATATTGTGTTTCTACATTAATTTGTTTACGTGTCATATGTCCAACCACAAGTGTGTGGAGGGGTGTAAATAGTCTCACATCGTCCCTTTAAGAGATAGATAGGGTAATTAATTCTCACTAGTCATCTTTTGAATTAATTTTTGAGGTTAAGTTTAACTCAAAATTTAATTTTCTACCTAAACTAACACTAAGTAAGTATCAATGTTGAATTGTTGATAGTTGACGTGCGTTTTAACTTTTAATAAACATTTAGTGATAATTCAGATAGAAAATTCATACACTAATATTATAATTGAGATATGGAGCTCAAATAATTATGATACTTTAGTCTTTGTTTACTTGTACTTTGTGATTTTTTGATTTGTTTTTACGTTGTTACTTGTTAGCAATTATTTTGGCTATTTTATTATAAATTTAAAGCCATGAAAGGTAAAAATTA</genome_strand>
        <mrna_strand>GTGAACTTTAGTACAAAGCTCATTTAGTTTCTCATTTCTACATTTTGCTGCTGAGAGGAAATTGATATGCAGACACCAAAAGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTTTCTGTGGAAGTGCCTCAAAGGATATCTGCTGCTACACTAAAGACAGCTCGAAAGCTCAGGACTCCAGGGTCAGATGTTGATTCTGTTTCATCTCCGAATCCAGCCAACAGGACACCTAAAGATAGGAGTCCGAAAGTTGTTTGTCGCCGGTCACCACGGAGTCCAGTGATAGAG................................................................................................................................AAGAAGCGTCCTGTCAAAGCATCTGACTTGGAAACGCAGCTTGCTCAACTCCAAGATGAGCTAAAGAAGGCGAAGGACCAACTCAGTTCTTCTGAATCATTGAAGAAAAGGGCTCAACAGGATGCTGATGAAGCTAAAAAGCAGCTTGTGGTCATGTCAGGAAAGCTCGAGGACTCTAAGAAGCAGCTGCTTGATCTCTCAGATTCAGAAGAAGCTCGACTGCTGGAGTTGCGCAAGATATCACAGGATCGAGACCGAGCATGGCAATCTGAGCTTGAGGCTATCCAGAAGCAGCATGAGTTGGACTCTGCTGCTTTGGCCTCTGCCATGAATGAAATACAGAAACTTAAACTTCAGCTGGACCGAGTGGCTGATTGTGAAGCCGCTCAAGCTCATCATGCTGAGTCAGCTTATGTTGAGATACAAAGCTTAAGGATTGAACTTACAAAGACCCTTACATTGGTTGATAAACTGAGAAACCAGCTTAACGATAGCAAGGAATCTGAGGCTTGTTCATTTGAAGAAGTGAGCAAAGCTCAGATGCAGCTGGAAGTGGCCAAGATAACCGAGGATACTCTACGTTCTGAAGGTTTGAAAGCAATGGAGGCTTGCAGGACCTTGTCTTTGGAGTTGGAAAAATCAAAGGATCGAGTAGCTTCATTGGAGGAGCTTGTCAGAAAACTCCAGTCTGGTCCAGTAGACTCTTCCGAAAGTTCTGTAGCTGCTGAAGGAAACAGCTCAAATGTAGAAGCTGATAAACTAAACATTGAGCTGAGTACCATCCAAGTTGAGGTAAGTCAATTAAGAGCTGCTTTGGAGGATTCCGAGAGAAAGTATCAGGAAGAATACATCCAGAACACCTTGCAGACACGAAGTGCTTATGAACTGGTGGAGCGCACAAAATCCGAATCACTTCAGAGGGAGGCTGAATGGGAAAGAAAACTAAATGAAGCAAAATCGGAAGTGGAAGAGTTGAAAGAAAAACTGATGAATGTTGAAGCTCAACTTGTTGATATTTCAGATGTGAATAAGGGGCTAAGTCTGCATGTTGAGCAAATGCAGTCAACTGATAAAGAGTTTGAGTTAGCTGCTCAACTAAAGAACTCAGAGTCAGTTTTGGGAGATCTGAGAGAAAATCTATTAGATAAAGAGACAGAGTTGCTGAGTCTTATGGAGGAGAATGAACAGTTGAAGTCGGAAATCAGTAAGAGGGAATCGGAGAGTACCAAAGTTAACAACGAGGCACTTGCCTTAGTAGAAGAAGCAAAAACTGCAGAAAGAGAGGCCCTGATGAAGCTGGGAGATTTGACGGAGGAAGCAGACAAAAGCAGCAGAAAGGTAACTCGTGTCACTGACGAGCTGAATGCAGCACAGGCTGCAAACTCGGAGATCGAAACCGAGCTAAGGAGGTTAAAAGTGCAATGTGATCAATGGAGGAAGGCTGCTGAAGCAGCTGCATCTATGCTTTCAACTGGAAACAACGGGAAATATGTCGAGAGAACAGGTTCTTTAGACTACCACACTATCGGTGGAAAGCTTGGTTCACCACTCTTGGATGACTTGGATGATGACTCGCCAAAGAAGAAGAACAACAACATGTTGAAGAAACTCGGTTTTTTATTGAAAAAGGGACAGAAGTAAATAACGCGCTATCGTGCAGGTTGCTTTCACATGATCATTGTTCCAATTCTTCAGTAATCTTGATCATGTAAACATTTTTCATCATTTGTTAATAAATCTACTAAGTTTCCTTCTCAGGACTTGCTGAGCTGATTCAGCCTTCATGGAATTAATCGTTTTCGCGGATTTTTGTATAGCTGTTTGGAAATCTCCAGTTTGTATGGCAATTGTTATTTTTAGATACAGACTGTTGTATTTTCCAAGTATTTGTTGCAAGTGTAATGATAGCTATGAGAGATGATTAATGGTAAAATTTGCTCTTTCATGTCATAGATGACATTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312754" ref_strand="+" ref_description="SGN-U312754        Tomato 200607 #1 [46 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S23 (RPS23B), ribosomal protein S23, Fragaria x ananassa, PIR:S56673 | chr5:693099-694483 REVERSE | Aliases: F9G14.270, F9G14_270(evalue: 3e-74, score=274) genbank/nr: gi|77999293|gb|ABB16993.1| unknown [Solanum tuberosum] (evalue: 3e-76, score=287)">
      <seq>actcttcttcttcaacctctgtaaaccggagtagtcatcttcaatcagcaatcatggggaagacacgtggaatgggagctggacgcaagctgaagtcccaccgcagaagacaaaggtgggctgacaagtcctacaagaagtcccatcttggtaacgaatggaagaagccatttgctggatcttcccatgctaaaggcattgtgctcgagaagataggtattgaggctaaacagccaaattctgctattcgtaaatgtgctagggttcaactcatcaagaatgggaaaaagattgctgcttttgtccctaatgatggttgcttgaactacatcgaagaaaacgatgaagtgctgattgctggatttggtcgtaaaggtcacgccgtgggagatattcccggagttcgtttcaaggtggtgaaggtttctggtgtctctcttctagctctcttcaaggagaagaaggagaagccaagatcttaatttatctcctctctttctttttttttgcaaaaataccctcgagcctgcaatggacttttagcttgtattcaagttattattttgtcaacttctatttaattagacattgtactggaattttggttcattaattttgagttcgaatgttaccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="+" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="22757" stop="70639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23057" g_stop="23114" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23115" i_stop="23986" i_length="872">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23987" g_stop="24142" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="214" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24143" i_stop="24224" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24225" g_stop="24351" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="341" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24352" i_stop="24435" i_length="84">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24436" g_stop="24731" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="637" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24732" i_stop="25989" i_length="1258">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.180" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25990" g_stop="26012" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="660" r_length="23" r_score="0.696"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26013" i_stop="26238" i_length="226">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.072" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26239" g_stop="26250" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="672" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="+" ref_id="SGN-U312754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23057" e_stop="23114"/>
          <exon e_start="23987" e_stop="24142"/>
          <exon e_start="24225" e_stop="24351"/>
          <exon e_start="24436" e_stop="24731"/>
          <exon e_start="25990" e_stop="26012"/>
          <exon e_start="26239" e_stop="26250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCTTCTTCAACCTCTGTAAACCGGAGTAGTCATCTTCAATCAGCAATCATGGGGTATGCATTATTTTTCCTTCGAAATTTTATACTGAACTTATTTTCTTGTGAAACATTTTTAAATTGTGTTTTTATCAACCAATTTTCTTAGTTTTTGATAATTGTTTGGTCAAGTACTAGTGTGATTGTTTATAGTAGTGAAATCTATGTGTTTAAGAGCTTTTTTTTTTCATTTGGGTGTGTGGGTTTTATTCAAGAATGGAACTTTTTTATAGTTAATTATCTTAAAGGGGCCATTTTGATCAATTTTGCTGAGTGTTTTTGAATAATTGAGATTATAGGATAGGTGAAGTTGTAATTTGTAATGACTGTAAAGAAGTGGACTTGAAATGGGGGTTTGGCGTTGGGGGCAGCGGCGGATCCAAGATTTTCATTTCACGGTAGAGGTTCGAAAAATAAAAATATAGTGCATAAGATTTGAACTTTGAATCTCTAGTTGATCTTTGAACTTATAGACGACTGCGCAAACTTCTAGTTTTGTGTTCAGTGATTCAGAATATATATATATATATAGGGGGTTGGATGGATTCATATAGCTGACTCTAACTAATCTGAGATTTAGCTATAGTTAATTCATATAGCTGACTCTAACTAATCTGTGGTGGTTTGCCTTCTCATCCAATTTGAGATCGGCCAGATGGGCTTTTGCTTTGTTTACTCGTCCAAAATGGACAGTTCACATGTTCTTGAACAAAATTAGTAACATCTTCCATGAGTTAACTGATAGAGAATTGATGTGCTGCTCGAGTTCTAAGCTAGGATTCTGATATTGTGTCATATCATTTGTCATCCAAATGATGAGTAATATCCTTGGTGGGAATCACAGTAATGTATTTCCTACTAACTAACTCCTGACATGGTTAAAAACACAGGAAGACACGTGGAATGGGAGCTGGACGCAAGCTGAAGTCCCACCGCAGAAGACAAAGGTGGGCTGACAAGTCCTACAAGAAGTCCCATCTTGGTAACGAATGGAAGAAGCCATTTGCTGGATCTTCCCATGCTAAAGGCATTGTGCTCGAGAAGATGTACGTTCATCTTTCTGCTTACATATCTTAAAAACATCTATAATTGTATCTAACCTGTGAAGTTGCTAATATGTGTTTGCAGAGGTATTGAGGCTAAACAGCCAAATTCTGCTATTCGTAAATGTGCTAGGGTTCAACTCATCAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCTAATGATGGTTGCTTGAACTACATCGAAGAAAACGTGAGTCTTTTGCTCTTACATGTGTAGACTGTTTTGCATTTTTCTGGGGTAACGTACTGACCTTACGAGTTCTTGATTTTGCAGGATGAAGTGCTGATTGCTGGATTTGGTCGTAAAGGTCACGCCGTGGGAGATATTCCCGGAGTTCGTTTCAAGGTGGTGAAGGTTTCTGGTGTCTCTCTTCTAGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAATTTATCTCCTCTCTTTCTTTTTTTTTGCAAAAATACCCTCGAGCCTGCAATGGACTTTTAGCTTGTATTCAAGTTATTATTTTGTCAACTTCTATTTAATTAGACATTGTACTGGAATTTTGGTTCATTAATTTTGAGTTCGAATGTTACCTTAATGCTTGCTTTGATACACAAGTCAAGTAAATTATACAGAGAAAAGTTAGACTGCATAGCTTAGGTGTGTAATTGATAATTTCACCACACTTTGGTGTGTTTTCATGTGATTGGTCTCGAATGTGAAACTATTCAACACCAGTAATGTCATATCAAAGAACCCCTCGCGAGATGGGACACAAGAGGGACAAGAGTTACAGTAGGGCTGTTCAAAATCGAACCGAAATTGATAAGTCGAACTGATAAAAAAGTTATTGGTTTATATTATTAAGATATTGGTTTAGTGGTTTTGATGACGGTTTTGATTTTTTTTGGTATCGGTTCTTAACGGTTTAAAGTTTTTTCTTAACGGATTGACCGATAACCTGATAATAATAATATTTATACCATGTTGTATATAAAGTCCTCGACTTAGAGTTTAATTTCCTACTTTTATTTTTGGTTGTTTCAAATACTTGATTATTCTACAATGTAAAAGTGTTTGCTTTTGAGCAAGATGTAACTTGTGAACTCAAGTGCATGGTTTATTTGGTTAGTCACCTTGTTTCCAAGTGATTTTCAATGTTTTTTCTTTTGTGTCACAAATCTTAACGGTTAAACCGATAACCGAACCGATATTGATCAAAGATCGATAAACCAATAACCGATAAACCAATATCTTAATGGCATCTCTACAAATCGATAACCAATAAGCTAACCCGATAAACTTCAAAATCGAACCGAACCGGCCGATACACAGCCCTAAGTTACAGTCAGAAGGTAATTGACGATAAGGCAAGGTCTCTCAGTGTTAAGTACATAAGCTTGATGTGTTTGATGAGTTGAAAAAAATATTTATTCGCATTCAATATTTGTAACATACTGAGTAACTTAAATACATGAATCGTTGAAAGTTGATATGATTGGTCTAATAAGTGGAAATACTTGCCAGTATTAACACAGCAATTTTACTTAGCATGGACTCTTCCATATCGATACAGCATATGTTTGACATTGTTTAAGAGTTCGAGCAAGACAGCAAGATATCCACATGCAACGTGATATTTATACAGCAATACATGAAAATCAAAACATTGCATTTATCAGACAATCTCCAATGAGTGTAGGAAAACATGTGCTTACTGATAGCAGTTTTCTTGAATCTAGTGAGGTTTTGACTGTAATTCTTCTTACATATAAAGACATCCAAGGTTTTTACATTCATGTAATACACATATCAGTACTTACACAGACATATGTTCTCAAAAACCTTGATCTTAGCTCAACGCAAAAAGAAAAAAAAAGCATGCATCACTTAAGCCTTCGTCATGTGTGCTATACAAACGTGATGCTTTTGCCACCCCCGGAAGCTAGCCTTGTTCTTGAAGCCTAACAATCTCTGAAGATCAAAGTTTACGCGAAATTAGCACATCAATACACCAATTTATAAAACGCAAAAGAGGTTAAAGATTAAGTTTTTCAGAGAAGTTCACTACATTTGGGAGAAAGATCTTTTCATGATAATATCAGGATAGAAACACA</genome_strand>
        <mrna_strand>ACTCTTCTTCTTCAACCTCTGTAAACCGGAGTAGTCATCTTCAATCAGCAATCATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACACGTGGAATGGGAGCTGGACGCAAGCTGAAGTCCCACCGCAGAAGACAAAGGTGGGCTGACAAGTCCTACAAGAAGTCCCATCTTGGTAACGAATGGAAGAAGCCATTTGCTGGATCTTCCCATGCTAAAGGCATTGTGCTCGAGAAGAT..................................................................................AGGTATTGAGGCTAAACAGCCAAATTCTGCTATTCGTAAATGTGCTAGGGTTCAACTCATCAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCTAATGATGGTTGCTTGAACTACATCGAAGAAAAC....................................................................................GATGAAGTGCTGATTGCTGGATTTGGTCGTAAAGGTCACGCCGTGGGAGATATTCCCGGAGTTCGTTTCAAGGTGGTGAAGGTTTCTGGTGTCTCTCTTCTAGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAATTTATCTCCTCTCTTTCTTTTTTTTTGCAAAAATACCCTCGAGCCTGCAATGGACTTTTAGCTTGTATTCAAGTTATTATTTTGTCAACTTCTATTTAATTAGACATTGTACTGGAATTTTGGTTCATTAATTTTGAGTTCGAATGTTACCTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332601" ref_strand="-" ref_description="SGN-U332601        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aatcacagtgtttgaacaatgatatcccggctggtttggctgcattaagggtcaaaaacaaggtgttatggagaatgaaatgaacttggatactattgagaagattgacatcaagcctgtgagggtttctattactgaaaacattagacggtgtcaaacagaggatgaagatggagtaggtgttcagtgcaatggtaattataatttggacgtgcctagccagatgaatgagatgaacctggaggataatgaaaatggttataatttggacatgcctagccagatggatgagatgaacctggaggatgatgtaaatggtgacctcaaacataccaggactgatcatgtcgagagagaatatgactcaactttcagaggtgatgaaggtagagtagatgtcaaggatgatttgaatactcctgagaaaacaaatgcaaagaaatatgtgtgcgcaaatcaagcggaccaatcaaacagtcaggtagaagaagtcagcatgaccccatttagcaataaggttgaatctctaatgaacaaattggcctatttgtcactaaatacccctcagacagcagttagaaggatcccctttgctgtcaagaattcttccggtgattgtcttgatttttgtgaaggagctggacatgtagttgggaagactgatttagatttgccttctttgcaaatcgatcataaagagaacaacaatttatgaggatagccaagcatgcttcattgcaagagattgttaggcttcaagaacaaggctagcttccgggggtggcaaaagcatcacgtttgtatagcacacatgacgaaggcttaagtgatgcatgctttttttttctttttgcgttgagctaagatcaaggtttttgagaacatatgtctgtgtaagtactgatatgtgtattacatgaatgtaaaaaccttggatgtctttatatgtaagaagaattacagtcaaaaaaacctgcagcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="27302" stop="25581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27002" g_stop="26259" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26258" i_stop="26108" i_length="151">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26107" g_stop="25881" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="969" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U332601" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>971</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332601" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27002" e_stop="26259"/>
          <exon e_start="26107" e_stop="25881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACAGTGTTTTGAACAATGATATCCCGGCTGGTTTGGCTGCAATTAAGGGTCAAAAACAAGGTGTTATGGAGAATGAAATGAACTTGGATACTATTGAGAAGATTGACATCAAGCCTGTTGAGGTTTCTATTACTGAAAACATTAGACGGTGTCAAACAGAGGATGAAGATGGAGTAGGTGTTCAGTGCAATGGTAATTATAATTTGGACGTGCCTAGCCAGATGAATGAGATGAACCTGGAGGATAATGAAAATGGTTATAATTTGGACATGCCTAGCCAGATGGATGAGATGAACCTGGAGGATGATGTAAATGGTGACCTCAAACATACCAGGACTGATCATGTCGAGAGAGAATATGACTCAACTTTCAGAGGTGATGAAGGTAGAGTAGATGTCAAGGATGATTTGAATACTCCTGAGAAAACAAATGCAAAGAAATATGTGTGCGCAAATCAAGCGGACCAATCAAACAGTCAGGTAGAAGAAGTCAGCATGACCCCATTTAGCAATAAGGTTGAATCTCTAATGAACAAATTGGCCTATTTGTCACTAAATACCCCTCAGACAGCAGTTAGAAGGATCCCCTTTGCTGTCAAGAATTCTTCCGGTGATTGTCTTGATTTTTGTGAAGGAGCTGGACATGTAGTTGGGAAGACTGATTTAGATTTGCCTTCTTTGCAAATCGATCATAAAGAGAACAACAATTTATGAGGATAGCCAAGCATGCTTCATTGCAAGGTAACAGATGTGTTTCTATCCTGATATTATCATGAAAAGATCTTTCTCCCAAATGTAGTGAACTTCTCTGAAAAACTTAATCTTTAACCTCTTTTGCGTTTTATAAATTGGTGTATTGATGTGCTAATTTCGCGTAAACTTTGATCTTCAGAGATTGTTAGGCTTCAAGAACAAGGCTAGCTTCCGGGGGTGGCAAAAGCATCACGTTTGTATAGCACACATGACGAAGGCTTAAGTGATGCATGCTTTTTTTTTCTTTTTGCGTTGAGCTAAGATCAAGGTTTTTGAGAACATATGTCTGTGTAAGTACTGATATGTGTATTACATGAATGTAAAAACCTTGGATGTCTTTATATGTAAGAAGAATTACAGTCAAAA</genome_strand>
        <mrna_strand>AATCACAGTG-TTTGAACAATGATATCCCGGCTGGTTTGGCTGC-ATTAAGGGTCAAAAACAAGGTGTTATGGAGAATGAAATGAACTTGGATACTATTGAGAAGATTGACATCAAGCCTGTGAGGGTTTCTATTACTGAAAACATTAGACGGTGTCAAACAGAGGATGAAGATGGAGTAGGTGTTCAGTGCAATGGTAATTATAATTTGGACGTGCCTAGCCAGATGAATGAGATGAACCTGGAGGATAATGAAAATGGTTATAATTTGGACATGCCTAGCCAGATGGATGAGATGAACCTGGAGGATGATGTAAATGGTGACCTCAAACATACCAGGACTGATCATGTCGAGAGAGAATATGACTCAACTTTCAGAGGTGATGAAGGTAGAGTAGATGTCAAGGATGATTTGAATACTCCTGAGAAAACAAATGCAAAGAAATATGTGTGCGCAAATCAAGCGGACCAATCAAACAGTCAGGTAGAAGAAGTCAGCATGACCCCATTTAGCAATAAGGTTGAATCTCTAATGAACAAATTGGCCTATTTGTCACTAAATACCCCTCAGACAGCAGTTAGAAGGATCCCCTTTGCTGTCAAGAATTCTTCCGGTGATTGTCTTGATTTTTGTGAAGGAGCTGGACATGTAGTTGGGAAGACTGATTTAGATTTGCCTTCTTTGCAAATCGATCATAAAGAGAACAACAATTTATGAGGATAGCCAAGCATGCTTCATTGCAAG.......................................................................................................................................................AGATTGTTAGGCTTCAAGAACAAGGCTAGCTTCCGGGGGTGGCAAAAGCATCACGTTTGTATAGCACACATGACGAAGGCTTAAGTGATGCATGCTTTTTTTTTCTTTTTGCGTTGAGCTAAGATCAAGGTTTTTGAGAACATATGTCTGTGTAAGTACTGATATGTGTATTACATGAATGTAAAAACCTTGGATGTCTTTATATGTAAGAAGAATTACAGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343403" ref_strand="+" ref_description="SGN-U343403        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: MCM(evalue: 9e-20, score=100)">
      <seq>gcacgaggcgactctctgagcatattatgtcacttcatgcaaagagtgtagagcagccaccagtcgcaaaccggttatgtacaggtttgccttttgccaaccattatctcagcgggaaatatttttatacaaattgctcttaatttttcttggcagcctcgctggatgttggagaaattgacatgaatacaaagcagggttctttagttgcaaggctgagacttgaccctaagaaagacggtggttttgttccattgcctgcccctcttctgcgtaaatacattgcttatgcaagaacttatatatttcctaggttgtcaaatgcgcttccttttatgtttgaaagttttagctactctttgaaacgttcatttatcttcttgtcatttggtgcaaggatgacaaaaccagcagcagaaatcttgcagaagttttacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="+" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="52904" stop="54471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53204" g_stop="53234" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53235" i_stop="53762" i_length="528">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53763" g_stop="54171" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="441" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="+" ref_id="SGN-U343403" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53204" e_stop="53234"/>
          <exon e_start="53763" e_stop="54171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAAG-CGACTCTCTGAGCATATTATGTCAGTAAGTGTCCTCACTCCTTTCTGCAAATGTTCGTTTAAGTTGGAAAATTGATCAACTTGGTAAGAAATATCCAACTGTCAACATCGCTCCTCAAATCCTTGTTTGCTATATGGAGACAATTCTTGTTGCAGTGAATAATTCTTTTTTGACCCCATCAGATTTAAGTAATCAATTTCTTTAACATTTTCTGCTTGACCAGTATGAAAACACTATCAAAATTCACTCGTTCAATGGAAATAGCTAGTTGATGCTATCCTTGAGTTATTTTTGGTAAGACTAGGTGAATCATTGAAAAAAAAAAGAACAAGATTCGGTGATCATTGACGAACAAAAACAATCCTGTCACTTCCCCTGCTACTTTTAGCATCATTTTCTTTAGCTTCTTCAAGGAAAAGGTCCTTTTTCTTTCATGCATATTAACATGCAATACAACTTGGATTGAAATTTATCAGTTGATGCCATTATATGGTTATCATTTAGAGTTTATTCATGTGAAAAATTGCATGATTTAAAGCTTTTCCTTGTCAGCTTCATGCAAAGAGTGTAGAGCAGCCACCAGTCGCAAAACGGTTATGTACAGGTTTGCCTTTTGCCAACCATTATCTCAGCGGGAAATATTTTTATACAAATTGCTCTTAATTTTTCTTTGCAGCCTCGCTGGATGTTGGAGAAATTGACATGAATACAAAGCAGGGTTCTTTAGTTGCAAGGCTGAGACTTGACCCTAAGAAAGACGGTGGTTTTGTTCCATTGCCTGCCCCTCTTCTGCGTAAATACATTGCTTATGCAAGAACTTATATATTTCCTAGGTTGTCAAATGCGCTTCCTTTTATGTTTGAAAGTTTTAGCTACTCTTTGAAACGTTCATTTATCTTCTTGTCATTTGGTGCAAGGATGACAAAACCAGCAGCAGAAATCTTGCAGAAGTTTTACTTGA</genome_strand>
        <mrna_strand>GCACGAGGCGACTCTCTGAGCATATTATGTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATGCAAAGAGTGTAGAGCAGCCACCAGTCGCAAACCGGTTATGTACAGGTTTGCCTTTTGCCAACCATTATCTCAGCGGGAAATATTTTTATACAAATTGCTCTTAATTTTTCTTGGCAGCCTCGCTGGATGTTGGAGAAATTGACATGAATACAAAGCAGGGTTCTTTAGTTGCAAGGCTGAGACTTGACCCTAAGAAAGACGGTGGTTTTGTTCCATTGCCTGCCCCTCTTCTGCGTAAATACATTGCTTATGCAAGAACTTATATATTTCCTAGGTTGTCAAATGCGCTTCCTTTTATGTTTGAAAGTTTTAGCTACTCTTTGAAACGTTCATTTATCTTCTTGTCATTTGGTGCAAGGATGACAAAACCAGCAGCAGAAATCTTGCAGAAGTTTTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344989" ref_strand="-" ref_description="SGN-U344989        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:2958708-2961203 FORWARD | Aliases: F11F8.24(evalue: 3e-70, score=261) genbank/nr: gi|15232734|ref|NP_187576.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|6682243|gb|AAF23295.1| hypothetical protein [Arabidopsis thaliana](evalue: 2e-68, score=261)">
      <seq>aggttgatttggttgcttggaatatgctgttagatgcatactctaagctaggaaaggttgaggaagcaaagagtgtgatcgagaggatgaaagaaaacggattctacccaaacgtagccacttatggcagtcttgcaaatggaatagctttggctaggaagccgggagaagcactcttgctttggaatgagataaaacagaggtgtggaatgggaaatggagaggagtctactccgtcttcaggcctcctcccgccattggaacctgatgaaggactgttggatacattagcagacatatgtgtccgagcagctttctttaggaaagcgttggagatcgttgcttgcatggagcaacacgggataccaccaaataagaccaagtttactaggatctacgtcgagatgcattcaaggatgtttactagtaagcacgcgtcaagagctagacaggacaggagaaaggaacgaaaacgagcagctgaagcattcaagttctggttgggattgcccaactcctattatggaagtgaatggcgccttgattcagtaattgacgatgaatacaaatctgagtaattgaagatgaaaacacagatattatacttgaatatatatgtagatttgaaagtttgctgtgttatacacagttgaaatataatctgatacagctttctactggattctgtaagtgtctcttctatccatgatggtcaatagcaattatatttagtggtttaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="56352" stop="55007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56052" g_stop="55320" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="758"/>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U344989" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344989" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56052" e_stop="55320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGATTTGGTTGCTTGGAATATGCTGTTAGATGCATACTCTAAGCTAGGAAAGGTTGAGGAAGCAAAGAGTGTGATCGAGAGGATGAAAGAAAACGGATTCTACCCAAACGTAGCCACTTATGGCAGTCTTGCAAATGGAATAGCTTTGGCTAGGAAGCCGGGAGAAGCACTCTTGCTTTGGAATGAGATAAAACAGAGGTGTGGAATGGGAAATGGAGAGGAGTCTACTCCGTCTTCAGGCCTCCTCCCGCCATTGGAACCTGATGAAGGACTGTTGGATACATTAGCAGACATATGTGTCCGAGCAGCTTTCTTTAGGAAAGCGTTGGAGATCGTTGCTTGCATGGAGCAACACGGGATACCACCAAATAAGACCAAGTTTACTAGGATCTACGTCGAGATGCATTCAAGGATGTTTACTAGTAAGCACGCGTCAAGAGCTAGACAGGACAGGAGAAAGGAACGAAAACGAGCAGCTGAAGCATTCAAGTTCTGGTTGGGATTGCCCAACTCCTATTATGGAAGTGAATGGCGCCTTGATTCAGTAATTGACGATGAATACAAATCTGAGTAATTGAAGATGAAAACACAGATATTATACTTGAATATATATGTAGATTTGAAAGTTTGCTGTGTTATACACAGTTGAAATATAATCTGATACAGCTTTCTACTGGATTCTGTAAGTGTCTCTTCTATCCATGATGGTCAATAGCAATTATATTTAGT</genome_strand>
        <mrna_strand>AGGTTGATTTGGTTGCTTGGAATATGCTGTTAGATGCATACTCTAAGCTAGGAAAGGTTGAGGAAGCAAAGAGTGTGATCGAGAGGATGAAAGAAAACGGATTCTACCCAAACGTAGCCACTTATGGCAGTCTTGCAAATGGAATAGCTTTGGCTAGGAAGCCGGGAGAAGCACTCTTGCTTTGGAATGAGATAAAACAGAGGTGTGGAATGGGAAATGGAGAGGAGTCTACTCCGTCTTCAGGCCTCCTCCCGCCATTGGAACCTGATGAAGGACTGTTGGATACATTAGCAGACATATGTGTCCGAGCAGCTTTCTTTAGGAAAGCGTTGGAGATCGTTGCTTGCATGGAGCAACACGGGATACCACCAAATAAGACCAAGTTTACTAGGATCTACGTCGAGATGCATTCAAGGATGTTTACTAGTAAGCACGCGTCAAGAGCTAGACAGGACAGGAGAAAGGAACGAAAACGAGCAGCTGAAGCATTCAAGTTCTGGTTGGGATTGCCCAACTCCTATTATGGAAGTGAATGGCGCCTTGATTCAGTAATTGACGATGAATACAAATCTGAGTAATTGAAGATGAAAACACAGATATTATACTTGAATATATATGTAGATTTGAAAGTTTGCTGTGTTATACACAGTTGAAATATAATCTGATACAGCTTTCTACTGGATTCTGTAAGTGTCTCTTCTATCCATGATGGTCAATAGCAATTATATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328632" ref_strand="-" ref_description="SGN-U328632        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:2958708-2961203 FORWARD | Aliases: F11F8.24(evalue: 2e-66, score=249) genbank/nr: gi|15232734|ref|NP_187576.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|6682243|gb|AAF23295.1| hypothetical protein [Arabidopsis thaliana](evalue: 2e-64, score=249)">
      <seq>tagcagggacaccaatcctgaccatctcggccagcacttctcgtgccctatccattaaaccttgcttcacaaacgcagaaataactgtcgtgtaagtgacatggtctggatggctctcactatctcctagatgtctcattgcctctaacatcctcaccatatctgtaacacgaccagcattcatataacctttccaatacgaaaacaagcaaatccttcctatcacctcttgcacaaagcttaatcatcacattataagtcaaaacatcaggctcacaatcaaactcactcatttcactaaacaactccaagaacctatttttatcaccaagattagcacaagcattcaacacagcattatacgcggctgtatcaggccgcgaatgcttaaccaaatcaagattagacaacctacgaatccttttagtaacagcacaaaaaagacccaaactttcaattggaccatcatcaccagaggacgcaagacgactaacaacagaactccaagctttaacatgaggtaaataaccagatttcaacattgacttaataatagaagcagcataaagaacatgtccacctttagctgcagcactagcaagaagtccaagtgaattcgcgtcgaggcggtgaagctgccgttcatggcggaggcgttggatgattgactgagcacgacggaggctgatagtggagttttggtaagataattgagaaactaaacgactaagacaagtggggtttgggagttgttgatcaagattcttggtgtagtgcaaccaagcttcatcagtctttctctgctgcaaaagggtcaaaagggtattgtcaggggaagctgaaaatgggttcttggaagtgattaaggaagtggggttggaggaattggaagtggggtgaggttgaaatgagctattggtagctttacaagtgagggttgaagaagaagaggagttaaagatgagattttgggtgaaggggaatggtgaagttgaggaagggggtgaagggggggtggggggtagtagagttgtcatgaattcttgaacatttggggaagaagagaaaggggagggagaagtagtttcaaattgaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="+" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="56065" stop="58058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56365" g_stop="56548" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56549" i_stop="56841" i_length="293">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56842" g_stop="57758" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="1101" r_length="917" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="+" ref_id="SGN-U328632" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1101</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328632" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56365" e_stop="56548"/>
          <exon e_start="56842" e_stop="57758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGGGACACCAATCCTGACCATCTCGGCCAGCACCTCTCGTGCCCTATCCATTAAACCTTGCTTCACAAACGCAGAAATAACTGTCGTGTAAGTGACATGGTCTGGATGGCTCTCACTATCTCCTAGATGTCTCATTGCCTCTAACATCCTCACCATATCTGTAACACGACCAGCATTCATATAACCTTTCATTAAAGTCGTATACATCCTAGAATTCGGTTCAAACACTCTAGACAACTCCGGTGGCTCATTATCTCTCCAATTAACAGAATTCGGAAGCAACTTCTCAAACACATCACCATCATTCAAACACACCTCTTCCACATTACCCTCTCTTAGCATCTTACACAAATCCCTCCTCCCTTCCCTCATAGCCTGAACAACTTTTTCCGCAGTAACCAAATCACCAAAACCAACATAAGCAGCAACAAGAGACTGAAATGTTGACATACATAACGGAATTCCCTTCTCGAGTATCCTTTCCAATACGAAAACAAGCAAATCCTTCCTATCACCTCTTGCACAAAGCTTAATCATCACATTATAAGTCAAAACATCAGGCTCACAATCAAACTCACTCATTTCACTAAACAACTCCAAGAACCTATTTTTATCACCAAGATTAGCACAAGCATTCAACACAGCATTATACGCGGCTGTATCAGGCCGCGAATGCTTAACCAAATCAAGATTAGACAACCTACGAATCCTTTTAGTAACAGCACAAAAAAGACCCAAACTTTCAATTGGACCATCATCACCAGAGGACGCAAGACGACTAACAACAGAACTCCAAGCTTTAACATGAGGTAAATAACCAGATTTCAACATTGACTTAATAATAGAAGCAGCATAAAGAACATGTCCACCTTTAGCTGCAGCACTAGCAAGAAGTCCAAGTGAATTCGCGTCGAGGCGGTGAAGCTGCCGTTCATGGCGGAGGCGTTGGATGATTGACTGAGCACGACGGAGGCTGATAGTGGAGTTTTGGTAAGATAATTGAGAAACTAAACGACTAAGACAAGTGGGGTTTGGGAGTTGTTGATCAAGATTCTTGGTGTAGTGCAACCAAGCTTCATCAGTCTTTCTCTGCTGCAAAAGGGTCAAAAGGGTATTGTCAGGGGAAGCTGAAAATGGGTTCTTGGAAGTGATTAAGGAAGTGGGGTTGGAGGAATTGGAAGTGGGGTGAGGTTGAAATGAGCTATTGGTAGCTTTACAAGTGAGGGTTGAAGAAGAAGAGGAGTTAAAGATGAGATTTTGGGTGAAGGGGAATGGTGAAGTTGAGGAAGGGGGTGAAGGGGGGGTGGGGGGTAGTAGAGTTGTCATGAATTCTTGAACATTTGGGGAAGAAGAGAAAGGGGAGGGAGAAGTAGTTTCAAATTGAGGAAAT</genome_strand>
        <mrna_strand>TAGCAGGGACACCAATCCTGACCATCTCGGCCAGCACTTCTCGTGCCCTATCCATTAAACCTTGCTTCACAAACGCAGAAATAACTGTCGTGTAAGTGACATGGTCTGGATGGCTCTCACTATCTCCTAGATGTCTCATTGCCTCTAACATCCTCACCATATCTGTAACACGACCAGCATTCAT.....................................................................................................................................................................................................................................................................................................ATAACCTTTCCAATACGAAAACAAGCAAATCCTTCCTATCACCTCTTGCACAAAGCTTAATCATCACATTATAAGTCAAAACATCAGGCTCACAATCAAACTCACTCATTTCACTAAACAACTCCAAGAACCTATTTTTATCACCAAGATTAGCACAAGCATTCAACACAGCATTATACGCGGCTGTATCAGGCCGCGAATGCTTAACCAAATCAAGATTAGACAACCTACGAATCCTTTTAGTAACAGCACAAAAAAGACCCAAACTTTCAATTGGACCATCATCACCAGAGGACGCAAGACGACTAACAACAGAACTCCAAGCTTTAACATGAGGTAAATAACCAGATTTCAACATTGACTTAATAATAGAAGCAGCATAAAGAACATGTCCACCTTTAGCTGCAGCACTAGCAAGAAGTCCAAGTGAATTCGCGTCGAGGCGGTGAAGCTGCCGTTCATGGCGGAGGCGTTGGATGATTGACTGAGCACGACGGAGGCTGATAGTGGAGTTTTGGTAAGATAATTGAGAAACTAAACGACTAAGACAAGTGGGGTTTGGGAGTTGTTGATCAAGATTCTTGGTGTAGTGCAACCAAGCTTCATCAGTCTTTCTCTGCTGCAAAAGGGTCAAAAGGGTATTGTCAGGGGAAGCTGAAAATGGGTTCTTGGAAGTGATTAAGGAAGTGGGGTTGGAGGAATTGGAAGTGGGGTGAGGTTGAAATGAGCTATTGGTAGCTTTACAAGTGAGGGTTGAAGAAGAAGAGGAGTTAAAGATGAGATTTTGGGTGAAGGGGAATGGTGAAGTTGAGGAAGGGGGTGAAGGGGGGGTGGGGGGTAGTAGAGTTGTCATGAATTCTTGAACATTTGGGGAAGAAGAGAAAGGGGAGGGAGAAGTAGTTTCAAATTGAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312540" ref_strand="+" ref_description="SGN-U312540        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: AT2G37060.2 | Symbol: None | CCAAT-box binding transcription factor, putative, similar to CAAT-box DNA binding protein subunit B (NF-YB) (SP:P25209) (GI:22380) (Zea mays); contains Pfam PF00808 : Histone-like transcription factor (CBF/NF-Y) and archaeal histone | chr2:15583137-15584945 FORWARD | Aliases: None (evalue: 6e-70, score=261) genbank/nr: gi|51971851|dbj|BAD44590.1| transcription factor NF-Y, CCAAT-binding - like protein [Arabidopsis thaliana] (evalue: 2e-69, score=265)">
      <seq>agagaaaagagattctttttatatatagttataaaaaaatttcagagttttctttgtaaaacgaacggtgttgatagggcaaaatccaaaactctgcctcatctcagtcgtctccctttctcccttcttctccaacgtccgatcttccagttccctccatccccagtatggcggatggtcaaggttcgtctaggtcaccggcgagtccaaacggaggtggtagtcatgagagtggtggggaccagagtccgaggtctaatgtacgtgaacaggacaggtttttaccaatagctaatattagtagaatcatgaagaaggcacttcctgctaatggaaaaattgcgaaggatgctaaggagactgttcaggaatgtgtttctgagttcatcagcttcattactagcgaggcaagtgacaagtgccagagagagaaaaggaagactattaatggtgacgatttgctatgggcaatggcaactcttgggtttgaagattatattgaaccactcaaggtgtatcttgctcgatacagagagatggagggtgatacaaagggaacgtcaaaggctgctgatggctctactaaaagagatgggatgcaacctggtcctaattcacagcttgcacatcagggttcatactcacaaggaatgaattatgggaattctcagggtcagcatatgatggtcccgatgcaaggaactgagtaaaaatccgatcttcgtcctgtttgagaagacgggtggagttgaaaacatattatatatatagatggttcttctgctgtaacctctgtaacatggtttattaattctagtgctctctagtgagtgccatgtcatatttaaagtttgtaaattgaggagatgttttaagaaatattatagacatgattgtttgtagtaataatgaaaaccattacctagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="90166" stop="85607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89866" g_stop="89701" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89700" i_stop="89270" i_length="431">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89269" g_stop="89030" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="406" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89029" i_stop="88340" i_length="690">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88339" g_stop="88210" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="536" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88209" i_stop="88087" i_length="123">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88086" g_stop="88081" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="542" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88080" i_stop="87999" i_length="82">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87998" g_stop="87921" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="620" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87920" i_stop="87797" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87796" g_stop="87746" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="671" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87745" i_stop="86164" i_length="1582">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86163" g_stop="85910" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="925" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="928" polyA_stop="942"/>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U312540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89866" e_stop="89701"/>
          <exon e_start="89269" e_stop="89030"/>
          <exon e_start="88339" e_stop="88210"/>
          <exon e_start="88086" e_stop="88081"/>
          <exon e_start="87998" e_stop="87921"/>
          <exon e_start="87796" e_stop="87746"/>
          <exon e_start="86163" e_stop="85910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGAGATTCTTTTTATATATAGTTATAAAAAAATTTCAGAGTTTTCTTTGTAAAACGAACGGTGTTGATAGGGCAAAATCCAAAACTCTGCCTCATCTCAGTCGTCTCCCTTTCTCCCTTCTTCTCCAACGTCCGATCTTCCAGTTCCCTCCATCCCCAGGTTCATTTTTATACCTTTTTTTCAAAAAAAAAAATTGTCACCATTTTCTCTCTCTAACTTCTCTCTCTAACCATTTCAATGGCAGAAATCAGAAATAGGGTTTTTTATATGGTTTATGTCGTTCATCTTACTGTTTTCTAGAAGGTTTTATTTTTTGGTTGAAAAAAGTCACCCCTTTGGCCCTTTACACCCTTTTCTCTGATTAACAATTTCAATGGCAGAAATGGGAATTAGGGTTTTTTTCTCTGGTTCATGTCATTCATCTTACTGTTTTCAACATGGGTTTTTGTTTTTGTTGAAAAAAAATCACTCCTTTACACCCTTTCTCTGTTTAACAATTTCAATGGCGGAAATGGGAATTAGGTTTTTTTTTCTTCCTGTTTTTTGTTATTCATCTAACTGATTTTGATGTGGGTTTTTGTTGTTTTAAGTATGGCGGATGGTCAAGGTTCGTCTAGGTCACCGGCGAGTCCAAACGGAGGTGGTAGTCATGAGAGTGGTGGGGACCAGAGTCCGAGGTCTAATGTACGTGAACAGGACAGGTTTTTACCAATAGCTAATATTAGTAGAATCATGAAGAAGGCACTTCCTGCTAATGGAAAAATTGCGAAGGATGCTAAGGAGACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATTACTAGCGAGTATGTGTTTAATGTTTAATGATTAATGATTTGATTAGCTCGTACTAGTTTTAGTTTGGTAATGAGTTGTTGCTGGTTAAATTTTGAGCCATAAATGCTGTGAGTTGTGTTTAAAGTGTGATCTTTTGTTGTTGATTGCACGATTGATTGATTTATTATCATGATCCCTTTTTCCTTCGTGACGATTATTGGATTGGATCGATGTTATCGTTAAGAGTGTTACCTTTTTATTGTTAATGAACATGCTCGCTTTGTTGAATTACTCTTTTAGTTTCAATTTGATTGTCTTGTTTTGACTTGCTATGGAGTATAGTAAGAAAATAAAGAAGAGTTTTGAACCGTGTGGTTTTAAATTAAAGACATGTGGAATATATAAAATTTCCTTTAATTTTGAACATGCCATGTGGAAGTTGATATTGAAGAGTTTGCCAAAAAAGAAATAGACATTTTTTTGAACGGAATAATAACGAGGGTAAGAAACACTTTGGAATGAAGGGAGTATTTTGATTAGTATTGTCCCGTTATGCAATGAGTCCATCTTTCTTTAGTAAATGTGTTTATAGGTGTATGGATATGCTATAGGTTGTAGGTAATGTTCACTCTTGTTTCTTTGTTCCTTTTGTGGAGAAATTTTATTTTTTATGTTGTTGATTTCCTTGACAATGTTGCTTGTTTCCTGATGGAATATAGGGCAAGTGACAAGTGCCAGAGAGAGAAAAGGAAGACTATTAATGGTGACGATTTGCTATGGGCAATGGCAACTCTTGGGTTTGAAGATTATATTGAACCACTCAAGGTGTATCTTGCTCGATACAGAGAGGTAATGATCACTATGTTTTTGATTTAGCTTTCCCTTGTCACCCTTTTGCAATGAAGCATAAATTGATGGGTTTTCCTCTCATGTGGTTGGTGGGATACCTGTTGGATGAATGAATTGTTGCAGATGGAGGTAAATGAATGTCTAATATAATGTCTTTATTGTCATTTCTTTTTTCTTCTTTGCCTTTGGGAGCAACTGATTCATTTGGTAGGGTGATACAAAGGGAACGTCAAAGGCTGCTGATGGCTCTACTAAAAGAGATGGGATGCAACCTGGTCCTAATTCACAGGTACGTACTCTTTCGTGTTCTTTGTTTTTTATCTCTTTTTTGTCTTGTTTGACATCTTAGATTGCTTAAGGAAATTTTTTACGTGCAACGTCCATTAATTTGATACTCCATCATATTGTTACAGCTTGCACATCAGGGTTCATACTCACAAGGAATGAATTATGGGAATTCTCAGGTAACTTTTTCTGTGTATCCATGATGTTTAATTGCTGCATGTCATCCTTCATAATGCTTCATTATGCATAGAAGTCTCAATCTCTGCCTGTTATATGTGGAAATGTTTTTCTTGTCTTAACCACAAAAGTGGTGGATTAACCATGATTCAGAATCTCATCGGGTACAAGAAACTCTAGGTATTTCCTTTCATCGGTTTAAGTTTTGTTAGGCAAAGTTAACCAGTATCTGTGCTGGTTGGAGATAAAAGTATCCGGTAGACATGTAAATGTTGAAACTAAGAAGCGTGTCTTAATGATTTTCAATTTATCAAGTTCTTCAATTTGACCCTTTAGTAACTATTGCAGATAAGTATAATCCTATGATGGATAAAATTGTATAATGGATAGTAGGGAAGGTTTGTGTATATATTCATTCAAGTCTTGGGCCTTTATGTGATATCACTACTTCAAAAGATGCCTAGAATTTTGCCGAAATGTTAATGATATTACCATAAATAGAACTTAAAAAAAGGTAAAATGAGGCAAATCCGTAGATGCAGTAAAAGAAGGGTATTATGAATAGCTTTTCGCACTTAGGTATCTGTTTTTTCCTATTAAAACCAGTACAACTAATTTTGGAGCTGAGTCCATTGTTTCTTCCTGCTTTATGGTGATCGTACATATTGCTCAGAGGACTACTTTTTGATGTGATGTCAGACTTTGCTAGACAGTTAGGTATATGAGGGATTGACATGTGTGATGGTCATTCTCCATGTGATGTGAGACTTTCTCAACAATTAGGTATATGAGGGATGGACATGTGTGATTGTCATTAAGTGTCATATTCCTTGTGTAATAAAGTGAGGCAGTACAGGTTTATTGAATAATTCTACCTAAATATATGTCATGAATTGAAGACATTGTGCAAAACATGGGTATCGGTGATTACCAGGTAATTAAGGACTTGAAATCATTGTTCACTGTATGCTTGAGTTTGAAACCAGATTATCGGATATCAACTACATGATGCATACTATAGATAATGATTTTTTGCACTGCGAGTGGAAAGTTGTTTTGTTTTATATGAAGGTGTTTGACTGGGCGCAAAGTTAAAAGAAGAAAAAAACTTCTGGCACGTGTTAAAAGTACCCTCGAGACTTATGGTTGTATACATGTCATGAATAGCTATAAATAAGAGTTCCCAAATATAGAAAGTGGAATTGGCTAATTAACATGCTTCTTGTAGTACGATTGCCTGATAACATTGATAGTTAGATGAATTAGTACGTTCATCTGAAAATGAAGGATAGTCAAGCTTGATGAGTAAACTCTATGTAATTGCTCGTGTCTTCTTAAGGTTTGAGACTTGTAAGACATCTGTCATGTTACGATGAGTATAGAAGCCTGTGTGCACGAGAGAGATCGCTCTTTGTTCTTATAGAATTCAATACAGGTAAACAAGTTGGGGGTATCCATGAATTTTACACCAGCTTATGTTTGACTACTATACGACAGCAATGTTAGTTGGTGGATTGATTGTTCTGATCCCACCCTAAGTCTTTTATGTCACTCTAATATTTACCTTGAAACCGCGTTTTGCAGGGTCAGCATATGATGGTCCCGATGCAAGGAACTGAGTAAAAATCCGATCTTCGTCCTGTTTGAGAAGACGGGTGGAGTTGAAAACATATTATATATATAGATGGTTCTTCTGCTGTAACCTCTGTAACATGGTTTATTAATTCTAGTGCTCTCTAGTGAGTGCCATGTCATATTTAAAGTTTGTAAATTGAGGAGATGTTTTAAGAAATATTATAGACATGATTGTTTGTAGTAATAATGAAAACCATTACCTA</genome_strand>
        <mrna_strand>AGAGAAAAGAGATTCTTTTTATATATAGTTATAAAAAAATTTCAGAGTTTTCTTTGTAAAACGAACGGTGTTGATAGGGCAAAATCCAAAACTCTGCCTCATCTCAGTCGTCTCCCTTTCTCCCTTCTTCTCCAACGTCCGATCTTCCAGTTCCCTCCATCCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCGGATGGTCAAGGTTCGTCTAGGTCACCGGCGAGTCCAAACGGAGGTGGTAGTCATGAGAGTGGTGGGGACCAGAGTCCGAGGTCTAATGTACGTGAACAGGACAGGTTTTTACCAATAGCTAATATTAGTAGAATCATGAAGAAGGCACTTCCTGCTAATGGAAAAATTGCGAAGGATGCTAAGGAGACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATTACTAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTGACAAGTGCCAGAGAGAGAAAAGGAAGACTATTAATGGTGACGATTTGCTATGGGCAATGGCAACTCTTGGGTTTGAAGATTATATTGAACCACTCAAGGTGTATCTTGCTCGATACAGAGAG...........................................................................................................................ATGGAG..................................................................................GGTGATACAAAGGGAACGTCAAAGGCTGCTGATGGCTCTACTAAAAGAGATGGGATGCAACCTGGTCCTAATTCACAG............................................................................................................................CTTGCACATCAGGGTTCATACTCACAAGGAATGAATTATGGGAATTCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAGCATATGATGGTCCCGATGCAAGGAACTGAGTAAAAATCCGATCTTCGTCCTGTTTGAGAAGACGGGTGGAGTTGAAAACATATTATATATATAGATGGTTCTTCTGCTGTAACCTCTGTAACATGGTTTATTAATTCTAGTGCTCTCTAGTGAGTGCCATGTCATATTTAAAGTTTGTAAATTGAGGAGATGTTTTAAGAAATATTATAGACATGATTGTTTGTAGTAATAATGAAAACCATTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342183" ref_strand="+" ref_description="SGN-U342183        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>taatggatagtagggaaggtttgtgtatatattcattcaagtcttgggcctttatgtgatatcactacttcaaaagatgcctagaattttgccgaaatgttaatgatattaccataaatagaacttaaaaaaaggtaaaatgaggcaaatccgtagatgcagtaaaagaagggtattatgaatagcttttcgcacttaggtatctgttttttcctattaaaaccagtacaactaattttggagctgagtccattgtttcttcctgctttatggtgatcgtacatattgctcagaggactactttttgatgtgatgtcagactttgctagacagttaggtatatgagggattgacatgtgtgatggtcattctccatgtgatgtgagactttctcaacaattaggtatatgagggatggacatgtgtgattgtcattaagtgtcatattccttgtgtaataaagtgaggcagtacaggtttattgaataattctacctaaatatatgtcatgaattgaagacattgtgcaaaacatgggtatcggtgattaccaggtaattaaggacttgaaatcattgttcactgtatgcttgagtttgaaaccagattatcggatatcaactacatgatgcatactatagataatgattttttgcactgcgagtggaaaagtgttttgttttatatgaaggtgtttgactgggcgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="87667" stop="86357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87367" g_stop="86657" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U342183" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87367" e_stop="86657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGATAGTAGGGAAGGTTTGTGTATATATTCATTCAAGTCTTGGGCCTTTATGTGATATCACTACTTCAAAAGATGCCTAGAATTTTGCCGAAATGTTAATGATATTACCATAAATAGAACTTAAAAAAAGGTAAAATGAGGCAAATCCGTAGATGCAGTAAAAGAAGGGTATTATGAATAGCTTTTCGCACTTAGGTATCTGTTTTTTCCTATTAAAACCAGTACAACTAATTTTGGAGCTGAGTCCATTGTTTCTTCCTGCTTTATGGTGATCGTACATATTGCTCAGAGGACTACTTTTTGATGTGATGTCAGACTTTGCTAGACAGTTAGGTATATGAGGGATTGACATGTGTGATGGTCATTCTCCATGTGATGTGAGACTTTCTCAACAATTAGGTATATGAGGGATGGACATGTGTGATTGTCATTAAGTGTCATATTCCTTGTGTAATAAAGTGAGGCAGTACAGGTTTATTGAATAATTCTACCTAAATATATGTCATGAATTGAAGACATTGTGCAAAACATGGGTATCGGTGATTACCAGGTAATTAAGGACTTGAAATCATTGTTCACTGTATGCTTGAGTTTGAAACCAGATTATCGGATATCAACTACATGATGCATACTATAGATAATGATTTTTTGCACTGCGAGTGGAAAGTTGTTTTGTTTTATATGAAGGTGTTTGACTGGGCGCAAAG</genome_strand>
        <mrna_strand>TAATGGATAGTAGGGAAGGTTTGTGTATATATTCATTCAAGTCTTGGGCCTTTATGTGATATCACTACTTCAAAAGATGCCTAGAATTTTGCCGAAATGTTAATGATATTACCATAAATAGAACTTAAAAAAAGGTAAAATGAGGCAAATCCGTAGATGCAGTAAAAGAAGGGTATTATGAATAGCTTTTCGCACTTAGGTATCTGTTTTTTCCTATTAAAACCAGTACAACTAATTTTGGAGCTGAGTCCATTGTTTCTTCCTGCTTTATGGTGATCGTACATATTGCTCAGAGGACTACTTTTTGATGTGATGTCAGACTTTGCTAGACAGTTAGGTATATGAGGGATTGACATGTGTGATGGTCATTCTCCATGTGATGTGAGACTTTCTCAACAATTAGGTATATGAGGGATGGACATGTGTGATTGTCATTAAGTGTCATATTCCTTGTGTAATAAAGTGAGGCAGTACAGGTTTATTGAATAATTCTACCTAAATATATGTCATGAATTGAAGACATTGTGCAAAACATGGGTATCGGTGATTACCAGGTAATTAAGGACTTGAAATCATTGTTCACTGTATGCTTGAGTTTGAAACCAGATTATCGGATATCAACTACATGATGCATACTATAGATAATGATTTTTTGCACTGCGAGTGGAAAAGTGTTTTGTTTTATATGAAGGTGTTTGACTGGGCGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340444" ref_strand="+" ref_description="SGN-U340444        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcacgaggcaaaatccaaaactctgcctcatctcagtcgtctccctttctcgcttcgtcttcaacgtccgatcttccacttccctccatccccaggttcatttttatacctttttttcaaaaaaaaaaattgtcaccattttctctctctaacttctctctctaaccatttcaatggcagaaatcagaaatagggttttttatatggtttatgtcgttcatcttactgttttctagaaggttttattttttggttgaaaaaagtcacccctttggccctttacacccttttctctgattaacaatttcaatggcagaaatgggaattaggggtttttttctctggttcatgtcattcatcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="90089" stop="89133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89795" g_stop="89433" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U340444" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89795" e_stop="89433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGGGCAAAATCCAAAACTCTGCCTCATCTCAGTCGTCTCCCTTTCTCCCTTCTTCTCCAACGTCCGATCTTCCAGTTCCCTCCATCCCCAGGTTCATTTTTATACCTTTTTTTCAAAAAAAAAAATTGTCACCATTTTCTCTCTCTAACTTCTCTCTCTAACCATTTCAATGGCAGAAATCAGAAATAGGGTTTTTTATATGGTTTATGTCGTTCATCTTACTGTTTTCTAGAAGGTTTTATTTTTTGGTTGAAAAAAGTCACCCCTTTGGCCCTTTACACCCTTTTCTCTGATTAACAATTTCAATGGCAGAAATGGGAATTA-GGGTTTTTTTCTCTGGTTCATGTCATTCATCTTAC</genome_strand>
        <mrna_strand>GCACGAGGCAAAATCCAAAACTCTGCCTCATCTCAGTCGTCTCCCTTTCTCGCTTCGTCTTCAACGTCCGATCTTCCACTTCCCTCCATCCCCAGGTTCATTTTTATACCTTTTTTTCAAAAAAAAAAATTGTCACCATTTTCTCTCTCTAACTTCTCTCTCTAACCATTTCAATGGCAGAAATCAGAAATAGGGTTTTTTATATGGTTTATGTCGTTCATCTTACTGTTTTCTAGAAGGTTTTATTTTTTGGTTGAAAAAAGTCACCCCTTTGGCCCTTTACACCCTTTTCTCTGATTAACAATTTCAATGGCAGAAATGGGAATTAGGGGTTTTTTTCTCTGGTTCATGTCATTCATCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341058" ref_strand="+" ref_description="SGN-U341058        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G37050.3 | Symbol: None | similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g67720.1); similar to putative light repressible receptor protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD87040.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat (InterPro:IPR001611) | chr2:15576065-15580805 FORWARD | Aliases: None (evalue: 9e-98, score=353) genbank/nr: kinase(evalue: 7e-96, score=353)">
      <seq>aatgttggcaggtcctcaatcacctgatagacgtattaactggatcaggcgccttgagattgctgaagattctgcaaaaggaatcgaatatcttcacacgggatgtgttccatccatcatccacagagatgtgaaaactagcaatattctgctggacaagaatacgagagcaaaggtttcagattttggtctctccaaacttgcagtagatggagcttctcatgtgtcaagcatagtccgtggaactgtaggatatctggatcccgaatattacatttcccagcagttgacggacaaaagtgacgtttacagttttggtgtcattctcttggagttaatatctggacaagaagcaatatctaacgaaaattttggtcacaattgccgtaatatagtccagtgggcgaaactacacattgaaagtggggacgttcagggcattattgaccccgctttacacaatgactatgacatccaatcaatttggaagatagctgagaaagctttgatgtgtgtccaacctcatggaaacatgagaccatcaatatcagaagttatcaaagaaatccaggatgcaattgcaatcgaaagaggcgcagaagcagtaaaggaaggtagttcagatgacatatccaggcattcaatgcattcctccctacacgggggttcaatggaccttggtgcaagtgaccattacttgtccattgatgaatctatcacaagaccagcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="97158" stop="94153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96858" g_stop="96779" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96778" i_stop="96703" i_length="76">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96702" g_stop="96516" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="267" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96515" i_stop="95253" i_length="1263">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95252" g_stop="95117" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="403" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95116" i_stop="94783" i_length="334">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94782" g_stop="94453" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="733" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U341058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96858" e_stop="96779"/>
          <exon e_start="96702" e_stop="96516"/>
          <exon e_start="95252" e_stop="95117"/>
          <exon e_start="94782" e_stop="94453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGGCAGGTCCTCAATCACCTGATAGACGTATTAACTGGATCAGGCGCCTTGAGATTGCTGAAGATTCTGCAAAAGGTTTGTATGAAAGGAAGAAGTTTTAGACGAGAAGGATCTTTCTATATTTACTGTGTTACTCTTATGCTTGTTTCAGGAATCGAATATCTTCACACGGGATGTGTTCCATCCATCATCCACAGAGATGTGAAAACTAGCAATATTCTGCTGGACAAGAATACGAGAGCAAAGGTTTCAGATTTTGGTCTCTCCAAACTTGCAGTAGATGGAGCTTCTCATGTGTCAAGCATAGTCCGTGGAACTGTAGGATATCTGGATCCCGAGTATGCATTCTTCTCTGGAACTTTGAGTTTTTTATTCACTGTACAAGGCCAAGCATTGACTGCATTTTTATTCCACAATTTTTTGTTGCTATGTGTACTCTTAATTTGTCGGAAGGATCATATATATTCTTGGTCTCTTCACCCCTATTAGCAAGGACAGTTTTTCTATGAATCTTAATGATGCAAATCAAGCTAGTATTATTCCTAAGTTGAATTATATACCTGAGTTTCAAAGCCATGGGAAAAAAAGCAAATCATGGCTACATGAGTAGTTTTCCCACAGCACAAGCTAATGTTTTAGCAGTTTTGCTTCACCAATTGAAAAGATTCTGCATAAATGACTTGTCCACAACTGCGACATTTCATTTTGGAAGTGTCTCAGTAGCAATATGATTTATTTATTTGATTCTCAACGCTAGATTATATCCATGGTGGTGTAAGATATTCACTTGACTGATCTTCAGTGAAACTGGAGAGGTCTCTGTATTTAATTGTTTTATTGACCTTGACATCACCTAATCCTACTCTTTGAGTTCTTCTATGCAACGACGACAACTACACACCATTGTCCATCTAATTGGCTTAGCTATATCAGTCCTCTATAAAAATTCTGCTCGATTGTGCCCATCTCATTCTACTAGAAATAATTTAAAATTCTACGGAATAATGGAGAATGTAGGGCTTCTCTAACCAGACTTTACTTCAATTATGTTATGTTCTCTTCGTCAATATTTATGAAACTCCTTTCTAGTACTGCCACGTTCCAATATATGTGATACCATTTGACAGAGCATGGAGTTAAAGAAACAAGGGAAGTGAAACTTGTGGTCCTAAAACAAGCCATAGACATTTGTGTGGCAATAAATCTTCTCATACGGGTAAAATATAAATTTTAAGCTAAATTGTTCTAAATATAGTAAAGTGTCGTTCATTTTGAGACAGAGTAAAAAGGAAAGTATGCTACAGAAGTTAAGGACAGAGTAATAATGATTAAAACAACAAAGGACTTGTGCATAATACCCTTTACAGGAGTGTCAACAATTGATACATCACCTCCTCTTTTAAAAATCTAGTGCTATTCTCTATAATGTCATCTGGATTTGTTAAAACTAGATGTTATGTTCATTCTGCATGAATTATGTTGCAAGATCAGTAGTTTTTCCTGAAGTTCGGTGGGTAATGCCTCCTAAGTTGTCTTTTCCTAAAAAGTTATATGTTCTTCAGGACTTTTAGATTGACTCTTTTAATTTAATGTCTATACAGATATTACATTTCCCAGCAGTTGACGGACAAAAGTGACGTTTACAGTTTTGGTGTCATTCTCTTGGAGTTAATATCTGGACAAGAAGCAATATCTAACGAAAATTTTGGTCACAATTGCCGTAATATAGTCCAGTGGGTAAGATTATTTATTGATCATATGCACTATCTTTGATAATAATTTGCTACTGAATTTTCACCTTAGTACTTTCTTCCATTAAAAAAAGTTGATATCTTCTTGCTTCTGATATAGTCCTATATTATTGTACTCGTTAGGTGTCCCAACGACCCAACCTTCTACATTGTCTTTAGTTTCTTCTATAGTTTAGTGGGAACATCTGAAAAATTTATATGGACTCCTGCATAATCCCTTTGTGGGAAGGATTTTATCTATTGAACCATGCTATAAAGTTTGGTGCCGTCTTAGACATTTGCTGGACGGATTTTAAAACTTTCTGCTTCTAATCATCCAGGCGAAACTACACATTGAAAGTGGGGACGTTCAGGGCATTATTGACCCCGCTTTACACAATGACTATGACATCCAATCAATTTGGAAGATAGCTGAGAAAGCTTTGATGTGTGTCCAACCTCATGGAAACATGAGACCATCAATATCAGAAGTTATCAAAGAAATCCAGGATGCAATTGCAATCGAAAGAGGCGCAGAAGCAGTAAAGGAAGGTAGTTCAGATGACATATCCAGGCATTCAATGCATTCCTCCCTACACGGGGGTTCAATGGACCTTGGTGCAAGTGACCATTACTTGTCCATTGATGAATCTATCACAAGACCAGCAGCT</genome_strand>
        <mrna_strand>AATGTTGGCAGGTCCTCAATCACCTGATAGACGTATTAACTGGATCAGGCGCCTTGAGATTGCTGAAGATTCTGCAAAAG............................................................................GAATCGAATATCTTCACACGGGATGTGTTCCATCCATCATCCACAGAGATGTGAAAACTAGCAATATTCTGCTGGACAAGAATACGAGAGCAAAGGTTTCAGATTTTGGTCTCTCCAAACTTGCAGTAGATGGAGCTTCTCATGTGTCAAGCATAGTCCGTGGAACTGTAGGATATCTGGATCCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACATTTCCCAGCAGTTGACGGACAAAAGTGACGTTTACAGTTTTGGTGTCATTCTCTTGGAGTTAATATCTGGACAAGAAGCAATATCTAACGAAAATTTTGGTCACAATTGCCGTAATATAGTCCAGTGG..............................................................................................................................................................................................................................................................................................................................................GCGAAACTACACATTGAAAGTGGGGACGTTCAGGGCATTATTGACCCCGCTTTACACAATGACTATGACATCCAATCAATTTGGAAGATAGCTGAGAAAGCTTTGATGTGTGTCCAACCTCATGGAAACATGAGACCATCAATATCAGAAGTTATCAAAGAAATCCAGGATGCAATTGCAATCGAAAGAGGCGCAGAAGCAGTAAAGGAAGGTAGTTCAGATGACATATCCAGGCATTCAATGCATTCCTCCCTACACGGGGGTTCAATGGACCTTGGTGCAAGTGACCATTACTTGTCCATTGATGAATCTATCACAAGACCAGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331813" ref_strand="+" ref_description="SGN-U331813        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G37050.3 | Symbol: None | similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g67720.1); similar to putative light repressible receptor protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD87040.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat (InterPro:IPR001611) | chr2:15576065-15580805 FORWARD | Aliases: None (evalue: 3e-53, score=195) genbank/nr: kinase(evalue: 2e-51, score=195)">
      <seq>ctgatgaccccatttgatagaatatgggcgtctgacaccctaaaaaaagccaattacctgttgatgtggctgctagtactgaaagagtttcaaccaaaatgccaattgatgtgaataccttaaatggtgagatgcctcctcagaaagcaatgcagactgctgtagtaggaagaaatatcttgttaacttatcgtctgaatctcgatggtttccctggttttggttgggcatttacttattttgctgaaattgaggatttaaaaccttgtcatagtaggaaattccggttgcttctccctggagctcctaatatcagcaaggttgctgttgatatccaagagaatacccatgggaaatatcgtttacatgagcccggctacttcaacttgtccttgccctttgtattatcttttagtttgggaaagacatccgattccaccatggggcctctcttgaatgctatggaagtaaacagatatgtaaagagaactgatggctctttagatggtaaaatcatgtctttttctttgaacattattataatgtggttcattgaaattagtatctatagtttatttcattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="100905" stop="99720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100605" g_stop="100023" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="597"/>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U331813" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100605" e_stop="100023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGA-CCCATTTGATAGAATATGGGCGTCTGACACCCTAAAAAAAGCCAATTACCTTGTTGATGTGGCTGCTGGTACTGAAAGAGTTTCAACCAAAATGCCAATTGATGTGAATACCTTAAATGGTGAGATGCCTCCTCAGAAAGCAATGCAGACTGCTGTAGTAGGAAGAAATGGCTCGTTAACTTATCGTCTGAATCTCGATGGTTTCCCTGGTTTTGGTTGGGCATTTACTTATTTTGCTGAAATTGAGGATTTGAAACCTGGTGATAGTAGGAAATTCCGGTTGCTTCTCCCTGGAGCTCCTGATATCAGCAAGGTTGCTGTTAATATCCAAGAGAATGCCCATGGGAAATATCGTTTATATGAGCCCGGCTACTTCAACTTGTCCTTGCCCTTTGTATTATCTTTTCGTTTCGGAAAGACATCTGATTCCACCATGGGGCCTCTCTTGAATGCTATGGAAGTAAACAGATATGTAAAGAGAACTGATGGCTCTTTAGACGGTAAAACCATGTCTTTTTCTTTGAACATTATTATAATGTGGTTCGTTGAAATGATTATCTGCAGTTTATTTCATTA</genome_strand>
        <mrna_strand>CTGATGACCCCATTTGATAGAATATGGGCGTCTGACACCCTAAAAAAAGCCAATTACC-TGTTGATGTGGCTGCTAGTACTGAAAGAGTTTCAACCAAAATGCCAATTGATGTGAATACCTTAAATGGTGAGATGCCTCCTCAGAAAGCAATGCAGACTGCTGTAGTAGGAAGAAATATCTTGTTAACTTATCGTCTGAATCTCGATGGTTTCCCTGGTTTTGGTTGGGCATTTACTTATTTTGCTGAAATTGAGGATTTAAAACCTTGTCATAGTAGGAAATTCCGGTTGCTTCTCCCTGGAGCTCCTAATATCAGCAAGGTTGCTGTTGATATCCAAGAGAATACCCATGGGAAATATCGTTTACATGAGCCCGGCTACTTCAACTTGTCCTTGCCCTTTGTATTATCTTTTAGTTTGGGAAAGACATCCGATTCCACCATGGGGCCTCTCTTGAATGCTATGGAAGTAAACAGATATGTAAAGAGAACTGATGGCTCTTTAGATGGTAAAATCATGTCTTTTTCTTTGAACATTATTATAATGTGGTTCATTGAAATTAGTATCTATAGTTTATTTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315704" ref_strand="+" ref_description="SGN-U315704        Tomato 200607 #1 [37 ESTs aligned] arabidopsis/peptide: AT3G09640.1 | Symbol: None | L-ascorbate peroxidase 1b (APX1b), identical to ascorbate peroxidase (Arabidopsis thaliana) gi:555576:emb:CAA56340; | chr3:2956306-2958168 FORWARD | Aliases: F11F8.23 (evalue: 2e-109, score=392) genbank/nr: gi|5257552|gb|AAD41405.1| cytosolic ascorbate peroxidase [Fragaria x ananassa] >gi|2738949|gb|AAB94574.1| cytosolic ascorbate peroxidase [Fragaria x ananassa] (evalue: 3e-109, score=398)">
      <seq>atttttgaatttgctttaaaagatttggaaatcgacgtttgatcggagaagaaatggtgaagtgttatccgacggtgagcgaagagtatcaaaaagcagttgaaaaatgtaagaggaagctcagaggacttatcgccgagaagaattgtgctccgattatgctgagattagcatggcattcagcagggacatatgatgtcaaaaccaaaactggtggtccatttggaacaatcaggcacccgaatgaacttaaacatggagctaacaatggtcttgatattgctgttcgacttttggagccgatcaaggaacagttcccaatcctatcctacgctgacttttatcagttggctggagtagttgctgttgaagttacgggaggccccgatattccttttcatcctgggagacaggacaagacagaaccacctccagaaggccgcttgcctgacgccaccaaaggctcagatcatctgagggaggtttttggacacatgggattgagtgataaagacattgttgctttatctggtggtcacactctgggaaggtgccacaaagaacgctcaggatttgagggagcatggaccaacaaccctctcatatttgacaattcctatttcaaggagcttttgagtggagagaaagaaggtctcctccagctaccatcagacaaagcactcttagaagatccagtcttccgccctctagtcgagaaatatgctgcagatgaagatgcattctttgctgattatgctgaagctcatttgaagctctcggagctcggatttgcagatgctgagtaaggtgtggtgagaaagttgtttcaataatctctggagatcagtctggttcttccaatttttcatttgtactatttgtgtatttaaaactttaaaagtctaaaaaccagctttacatatattatatgattgaagaatattgtatggctattacataagtcttgtaataatgcaacttttgtgtctttatgtttgttgctagtatatacaatatattaagtaatggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0036O20-RPxgY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0036O20.1" temp_strand="-" temp_description="C09HBa0036O20.1  AC216445.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0036O20 upload_account_name:spain (1 - 118462)">
        <position start="110944" stop="106510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110663" g_stop="110493" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110492" i_stop="109150" i_length="1343">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109149" g_stop="108975" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="347" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108974" i_stop="108888" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108887" g_stop="108822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="413" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108821" i_stop="108138" i_length="684">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108137" g_stop="108089" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="462" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108088" i_stop="108001" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108000" g_stop="107918" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="545" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107917" i_stop="107801" i_length="117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107800" g_stop="107721" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="625" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107720" i_stop="107597" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107596" g_stop="107494" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="728" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107493" i_stop="107316" i_length="178">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107315" g_stop="107257" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="787" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="107256" i_stop="107059" i_length="198">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="107058" g_stop="106810" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="1036" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1037" polyA_stop="1065"/>
      <MATCH_line gen_id="C09HBa0036O20.1" gen_strand="-" ref_id="SGN-U315704" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1035</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0036O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110663" e_stop="110493"/>
          <exon e_start="109149" e_stop="108975"/>
          <exon e_start="108887" e_stop="108822"/>
          <exon e_start="108137" e_stop="108089"/>
          <exon e_start="108000" e_stop="107918"/>
          <exon e_start="107800" e_stop="107721"/>
          <exon e_start="107596" e_stop="107494"/>
          <exon e_start="107315" e_stop="107257"/>
          <exon e_start="107058" e_stop="106810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAATTT-TTTTTGTAGATTTGGAAATCGACGTTTGATCGGAGAAGAAATGGTGAAGTGTTATCCGACGGTGAGCGAAGAGTATCAAAAAGCAGTTGAAAAATGTAAGAGGAAGCTCAGAGGACTTATCGCCGAGAAGAATTGTGCTCCGATTATGCTGAGATTAGCGTAAACTTTCTTTTTCCTCTCTTTTTATGTGCTTATGTTTATTGATTTCTCTGTTTCGTAGGCGGATTCAGAAATTAAGCTCGAACTTGTTTGGCCTAGCTGTGTTTTTCCAGAATTTGGAAGCTATAAATTTAAAATCCTAGCTCTGCCTCGAGTCGAGTCTCATATAGGTAAATTGTGGTTACTAGGAAATCTGGAAATTATAAATTTCAAATTTTAGCTTGGATTAGTAATCAACTACGATAAATTTGAATGCGCTACGTATGAATTTCCATGATAAGCGAAATTAGTACTCTAATATGAAGAATAAGACAAGTAAAATGTTGTTGGGAAAGATACTATAGTACAATATTGATTTAAGACTAGAATTACGAAGGTTTGTGGCAAATCACTGTCTTGGAAGCGATTTTGGCCCCATTCCGGTGCAAATTCTTGTAGCCTATAGCTCTCCAAGGTTCCATAGTTACTCTCAAACACGTGCACACGTGCATTCATGACTGAAAGTGGTGTAGTATGATATGAAATATTTTAAGAGTAGGAAAGGAGGAAGATGTTTTATTTTTTGGCGGTATCGCATAATGTTCACAAAAGGCGTGCTTTTATGGGATATTTCAAAAGAGGAGTTATTGTAAAGACAAGAGTTAAATTTGAGAAACGCGTTGTGAATGTAAATGACATTGAAAGCCATTGCATCACATTTCATAGAAACTCTTCTTTAATTTCGGAACGGAGATGTTCTCCTCTTTGTAATGTACTTTGCTTTGTGTTCTTTGCATTACACAAAATGAATAAAGGTAGAATTAATTTTACATATGTATCAGCAGATTAAATTATGAATGTGTAAAAACCGTTACATTGTTGATGTTTATAAGTTCCCTAACTTCAACTGGAGACCGGCGTGATGCATAATTTTACTGTCGGTATATATAAGTTAAATCCATTAAAATTTTAGGAATGTGCAAACTCATAAATTTAAGCCTAACAGAAATGTTACAATATCTGTTCATTTACCTGTCCAGATGGTCTTCGTATAGAGGTTCTTGAGTATAGTACTTGTCAGTACTAGAGTCAGAATTTGAAGAAACCAATGGGATTCAAAATTTACTATATATATATATATAGAAGATAATTTTGATCTTATATATATGGTCTTCGACCATGAATTCGGTTACGGTAGTCTGGCTCAGCCCTTGGTACTAGTCGTAATGTGCTTTGTTTTCCAGAATTTAACTTGTGTGGACGCCGAAGTCCAAAGTTGACACAAAACAAAAAAGGCTCGTGTAGTTTGTTAAGAATTTTTTACATGATGGATGCCTCTAAGTTTTGGATTACTTCGGTTTCAGATGGCATTCAGCAGGGACATATGATGTCAAAACCAAAACTGGTGGTCCATTTGGAACAATCAGGCACCCGAATGAACTTAAACATGGAGCTAACAATGGTCTTGATATTGCTGTTCGACTTTTGGAGCCGATCAAGGAACAGTTCCCAATCCTATCCTACGCTGACTTTTATCAGGTATAAGGCAATTTAAGCCTCGGGACAAAATAATTTCTTATTGTGTGACTTCATTTAACTGTTGCCTTTTCTGATTACAAACTGAAGTTGGCTGGAGTAGTTGCTGTTGAAGTTACGGGAGGCCCCGATATTCCTTTTCATCCTGGGAGACAGGTAATTAGTAACATTAATTTTCATTTCTCGCCTCGCAAGAATGTTCTTCTGTATATTAAAAGAGTGTTACTTACATACCGATCTGTTATCTCTCTCTTGCTGGATAGCCAATTTGAAGATGCAATACATGGTTTCATCTATTTCCATGTGTTTTGTAGTTTACTTTTCACAAAAAAAAAATTTAATTCTAAAATTTACAGTATTACTGATATAAGTGCTCTGCCTATTACTTCTCTTCGGTGTTGTTTTTCCTTTTCGTATTAGTTGTCATGTTTTCTTCACTACAATTTTTCCTTTTCATTACTACTTTTTTTTACTTCACTTGAGCTGAGGGTCTCTCAGAAATAACTTCTCTTCCTACGTATACTAAAATTATACCTCCATCCAATATTACACCATCATCACTAGATTGACATTTAAAAATAATCTTTTGGGGATTGTGTACATAGTCGTCTTCTTTCCAAAGAAAAGGTTTATTGAATTTATAGCATGTAAGAAAGCTGAATATTCTGGACTTGAAATATAGGAACTTGATCACTAGGATTGGCTCCTTGTTGTCAAGAATATTATGTTACAATGCAATACGGATTTGAAATGTTAGGAAAATATAGGCAACTTAGAACTTGTATACGGATTAATTTCATCGGCTAATGAAAATGACAATTGTTGGTTATTACTTTCCAGGACAAGACAGAACCACCTCCAGAAGGCCGCTTGCCTGACGCCACCAAAGGTTACTGCTTGCTTCTTTAACTCTTTAAGTAGCTCAAACTACATGGCCTCTCTGAAAAATCGAGCTGTTGTTTTTTCGTTTTCTTCAGGCTCAGATCATCTGAGGGAGGTTTTTGGACACATGGGATTGAGTGATAAAGACATTGTTGCTTTATCTGGTGGTCACACTCTGGTAAGCACGCAAAAAACATTGATATAATGTTGCACTTACTCTTTGAAAATGGTGCCTTTAGAATGTATATTTCCGTTGTATTTTACTCGGTATCATGGTTTCTTGATTTTTAATCAGGGAAGGTGCCACAAAGAACGCTCAGGATTTGAGGGAGCATGGACCAACAACCCTCTCATATTTGACAATTCCTATTTCAAGTAAGTTTACGCTCCTGTAGAAATTCCTAATTAACTTTGCGTCCTGAATTAAAGTTTGCACTTACTAATTGCGGAAGCTCATATGAAATTTTACGCTGTGTTGTAACTTCTCTTTGAATGTCAGGGAGCTTTTGAGTGGAGAGAAAGAAGGTCTCCTCCAGCTACCATCAGACAAAGCACTCTTAGAAGATCCAGTCTTCCGCCCTCTAGTCGAGAAATATGCTGCAGTACGTACACCATATTTTGATTGTTCTTTCAGGACCATATTTACGTACCATTTTCTGGCGTAGACATATACTTGAGTGCGATAAACTGAAAGTTAAATGATCATTCTTAATGCATAACATTTATATGATGATCCTCTTTGTCTAATTAGATGAAAATGAAAATGCCTTTGTTCTACAGGATGAAGATGCATTCTTTGCTGATTATGCTGAAGCTCATTTGAAGCTCTCGGAGCTCGGGTAAGTTATCTTTGTTCTACATCCCTCACTAGCTAGCCATATCTATCGATAAATAGGATCAGCGACTGATTCTGCTGTTTATCAAATACTTGTTCATAATAACTTACTTATTATAAGTGGCATAAGTCGTCTATATATGTTTAATATCGACAGTATATAAAACTTAAACTCGTTTGTTTTTCGTGCACTCTAATGCAGATTTGCAGATGCTGAGTAAGGTGTGGTGAGAAAGTTGTTTCAATAATCTCTGGAGATCAGTCTGGTTCTTCCAATTTTTCATTTGTACTATTTGTGTATTTAAAACTTTAAAAGTCTAAAAACCAGCTTTACATATATTATATGATTGAAGAATATTGTATGGCTATTACATAAGTCTTGTAATAATGCAACTTTTGTGTCTTTATGTTTGTTGCTAGTATATACAATATATTAAGTAATGGTAAAATA</genome_strand>
        <mrna_strand>ATTTTTGAATTTGCTTTAAAAGATTTGGAAATCGACGTTTGATCGGAGAAGAAATGGTGAAGTGTTATCCGACGGTGAGCGAAGAGTATCAAAAAGCAGTTGAAAAATGTAAGAGGAAGCTCAGAGGACTTATCGCCGAGAAGAATTGTGCTCCGATTATGCTGAGATTAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATTCAGCAGGGACATATGATGTCAAAACCAAAACTGGTGGTCCATTTGGAACAATCAGGCACCCGAATGAACTTAAACATGGAGCTAACAATGGTCTTGATATTGCTGTTCGACTTTTGGAGCCGATCAAGGAACAGTTCCCAATCCTATCCTACGCTGACTTTTATCAG.......................................................................................TTGGCTGGAGTAGTTGCTGTTGAAGTTACGGGAGGCCCCGATATTCCTTTTCATCCTGGGAGACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGACAGAACCACCTCCAGAAGGCCGCTTGCCTGACGCCACCAAAG........................................................................................GCTCAGATCATCTGAGGGAGGTTTTTGGACACATGGGATTGAGTGATAAAGACATTGTTGCTTTATCTGGTGGTCACACTCTG.....................................................................................................................GGAAGGTGCCACAAAGAACGCTCAGGATTTGAGGGAGCATGGACCAACAACCCTCTCATATTTGACAATTCCTATTTCAA............................................................................................................................GGAGCTTTTGAGTGGAGAGAAAGAAGGTCTCCTCCAGCTACCATCAGACAAAGCACTCTTAGAAGATCCAGTCTTCCGCCCTCTAGTCGAGAAATATGCTGCA..................................................................................................................................................................................GATGAAGATGCATTCTTTGCTGATTATGCTGAAGCTCATTTGAAGCTCTCGGAGCTCGG......................................................................................................................................................................................................ATTTGCAGATGCTGAGTAAGGTGTGGTGAGAAAGTTGTTTCAATAATCTCTGGAGATCAGTCTGGTTCTTCCAATTTTTCATTTGTACTATTTGTGTATTTAAAACTTTAAAAGTCTAAAAACCAGCTTTACATATATTATATGATTGAAGAATATTGTATGGCTATTACATAAGTCTTGTAATAATGCAACTTTTGTGTCTTTATGTTTGTTGCTAGTATATACAATATATTAAGTAATGGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="569" PGL_stop="1860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="569" e_stop="747"/>
            <exon e_start="1339" e_stop="1515"/>
            <exon e_start="1683" e_stop="1860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="569" e_stop="747" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.996">
            <gDNA_intron_boundary i_start="748" i_stop="1338" i_length="591"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1339" e_stop="1515" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.766" acc_prob="0.977">
            <gDNA_intron_boundary i_start="1516" i_stop="1682" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="0.961">
            <gDNA_exon_boundary e_start="1683" e_stop="1860" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="569" stop="747"/>
              <exon start="1339" stop="1515"/>
              <exon start="1683" stop="1860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG : GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTG : GTGAAAGGCTCTGCTTACACACCATCCTCTCCAGACGTTATGTCGTTATCGTCATGTGGCATTTCACTCTATTTGTATAGGTAATGGGGCTGAGGAATTCCAGAAATATTACTAATAGAACCAGAAAATGTGTATACTTCCAAAATTTGAATCACGTGGCTTTGAAGACCAGTTGCCA</gDNA_template>
            <first_frame> V  A  P  L  V  A  G  M  A  I  A  A  A  A  Y  A  S  R  Y  G  I  Q  A  W  Q  A  F  K  A  R  P  P  T  V  R  M  R  K  F  Y  E  G  G  F  Q  P  K  M  N  R  R  E  A  A  L  I  L  G  V  R :   E  N  T  E  A  N  K  V  R  E  A  H  R  K  V  M  V  A  N  H  P  D  A  G  G  S  H  Y  L  A  S  K  I  N  E  A  K  D  T  L  L  G  Q  T  K  N  N  G  S  A  F  *  A  T  R  N  F  C  W :   *  K  A  L  L  T  H  H  P  L  Q  T  L  C  R  Y  R  H  V  A  F  H  S  I  C  I  G  N  G  A  E  E  F  Q  K  Y  Y  *  *  N  Q  K  M  C  I  L  P  K  F  E  S  R  G  F  E  D  Q  L  P </first_frame>
            <second_frame>  S  H  H  *  *  Q  E  W  L  *  P  L  L  H  M  L  Q  G  M  E  S  R  H  G  K  H  S  R  P  D  L  P  L  *  E  C  A  S  F  M  K  E  V  F  S  L  K  *  T  E  G  K  Q  L  *  F  L  E  S   : G  K  T  L  K  Q  I  K  *  G  K  H  I  G  R  *  W  *  L  T  I  Q  M  Q  E  V  V  T  T  L  L  L  K  *  T  R  R  K  T  L  C  L  D  R  R  R  T  M  D  P  R  S  R  L  H  E  I  F  A   : G  E  R  L  C  L  H  T  I  L  S  R  R  Y  V  V  I  V  M  W  H  F  T  L  F  V  *  V  M  G  L  R  N  S  R  N  I  T  N  R  T  R  K  C  V  Y  F  Q  N  L  N  H  V  A  L  K  T  S  C   </second_frame>
            <third_frame>   R  T  I  S  S  R  N  G  Y  S  R  C  C  I  C  F  K  V  W  N  P  G  M  A  S  I  Q  G  Q  T  S  H  C  E  N  A  Q  V  L  *  R  R  F  S  A  *  N  E  Q  K  G  S  S  S  D  S  W  S  Q  :  G  K  H  *  S  K  *  S  E  G  S  T  *  E  G  D  G  S  *  P  S  R  C  R  R  *  S  L  P  C  F  *  N  K  R  G  E  R  H  F  A  W  T  D  E  E  Q  W  I  R  V  L  G  Y  T  K  F  L  L  :  V  K  G  S  A  Y  T  P  S  S  P  D  V  M  S  L  S  S  C  G  I  S  L  Y  L  Y  R  *  W  G  *  G  I  P  E  I  L  L  I  E  P  E  N  V  Y  T  S  K  I  *  I  T  W  L  *  R  P  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="569" stop="747"/>
                    <exon start="1339" stop="1495"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAPLVAGMAIAAAAYASRYGIQAWQAFKARPPTVRMRKFYEGGFQPKMNRREAALILGVRENTEANKVREAHRKVMVANHPDAGGSHYLASKINEAKDTLLGQTKNNGSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="640" e_stop="747"/>
            <exon e_start="1339" e_stop="1703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="640" e_stop="747" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.996">
            <gDNA_intron_boundary i_start="748" i_stop="1338" i_length="591"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1339" e_stop="1703" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="640" stop="747"/>
              <exon start="1339" stop="1703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG : GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACA</gDNA_template>
            <first_frame> A  S  I  Q  G  Q  T  S  H  C  E  N  A  Q  V  L  *  R  R  F  S  A  *  N  E  Q  K  G  S  S  S  D  S  W  S  Q  :  G  K  H  *  S  K  *  S  E  G  S  T  *  E  G  D  G  S  *  P  S  R  C  R  R  *  S  L  P  C  F  *  N  K  R  G  E  R  H  F  A  W  T  D  E  E  Q  W  I  R  V  L  G  Y  T  K  F  L  L  V  L  R  H  T  Q  I  Q  E  S  L  V  K  K  L  D  T  R  T  L  R  I  H  H  K  M  Y  K  L  Q  L  V  C  F  N  S  K  Q  A  *  E  V  D  Y  M  N  S  H  Y  S  C  G  I  L  G  R  *  K  A  L  L  T   </first_frame>
            <second_frame>  Q  A  F  K  A  R  P  P  T  V  R  M  R  K  F  Y  E  G  G  F  Q  P  K  M  N  R  R  E  A  A  L  I  L  G  V  R :   E  N  T  E  A  N  K  V  R  E  A  H  R  K  V  M  V  A  N  H  P  D  A  G  G  S  H  Y  L  A  S  K  I  N  E  A  K  D  T  L  L  G  Q  T  K  N  N  G  S  A  F  *  A  T  R  N  F  C  W  Y  L  D  I  P  K  S  K  S  L  *  S  K  N  *  T  L  E  H  *  E  Y  I  I  R  C  T  S  Y  N  *  F  V  L  I  L  S  K  L  E  K  S  I  I  *  I  L  T  I  H  V  A  F  W  V  G  E  R  L  C  L  H  </second_frame>
            <third_frame>   K  H  S  R  P  D  L  P  L  *  E  C  A  S  F  M  K  E  V  F  S  L  K  *  T  E  G  K  Q  L  *  F  L  E  S   : G  K  T  L  K  Q  I  K  *  G  K  H  I  G  R  *  W  *  L  T  I  Q  M  Q  E  V  V  T  T  L  L  L  K  *  T  R  R  K  T  L  C  L  D  R  R  R  T  M  D  P  R  S  R  L  H  E  I  F  A  G  T  *  T  Y  P  N  P  R  V  F  S  Q  K  I  R  H  *  N  I  E  N  T  S  *  D  V  Q  V  T  T  S  L  F  *  F  *  A  S  L  R  S  R  L  Y  E  F  S  L  F  M  W  H  F  G  *  V  K  G  S  A  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="641" stop="747"/>
                    <exon start="1339" stop="1495"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAFKARPPTVRMRKFYEGGFQPKMNRREAALILGVRENTEANKVREAHRKVMVANHPDAGGSHYLASKINEAKDTLLGQTKNNGSAF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1435" stop="1635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKRGERHFAWTDEEQWIRVLGYTKFLLVLRHTQIQESLVKKLDTRTLRIHHKMYKLQLVCFNSKQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7546" PGL_stop="6979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7546" e_stop="6979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7546" e_stop="6979" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7546" stop="6979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCACTACCCCTTTTCCGGCCACCGTGCACCGCCACTCTCCTCCGCAAAATCACCGGAACACGGCGGTGATCTTCCTTCATTCCTCACTTTATCAGTACAATCCTACATATAGTTTTTCTAACACTAAAATAGATAGTCAGTCTAACAGTTACCGGAAAACTCGAAGTTTATGTTCATATTTGCTTCGTAATGTGTGTTTGTATGTGTAAACAGCTCAACTGAAAACTCGTGTAGCTGGTGGAATTTATAGGTGAAGCACGTTTGATGGTGAAAAAACGATGAACTACAGCTGATCAACTAGATATATATTGAGAGATAAGACGTACAATGGCGGATGTTGCAGTTGCGAAGTCATGGAGAGACGAGCTAGCGAGTTTAGTGGAGGATAGTGGAATAAGGTTTGCCGGAGAAATCTCTGCTCCGACGTATTCTACGCCGGCGTTTGAGGAGAAGAGATCGGTGTATGAGTCGCCGGCGATTGAGGAGGTTGTGGCGGAGCCGGAGAGTTTTAAGGACCAAATCGAAGGTTTCGCGAAGGCTTGGGGAGAAATGTTGCTGGAATTGA</gDNA_template>
            <first_frame> S  P  L  P  L  F  R  P  P  C  T  A  T  L  L  R  K  I  T  G  T  R  R  *  S  S  F  I  P  H  F  I  S  T  I  L  H  I  V  F  L  T  L  K  *  I  V  S  L  T  V  T  G  K  L  E  V  Y  V  H  I  C  F  V  M  C  V  C  M  C  K  Q  L  N  *  K  L  V  *  L  V  E  F  I  G  E  A  R  L  M  V  K  K  R  *  T  T  A  D  Q  L  D  I  Y  *  E  I  R  R  T  M  A  D  V  A  V  A  K  S  W  R  D  E  L  A  S  L  V  E  D  S  G  I  R  F  A  G  E  I  S  A  P  T  Y  S  T  P  A  F  E  E  K  R  S  V  Y  E  S  P  A  I  E  E  V  V  A  E  P  E  S  F  K  D  Q  I  E  G  F  A  K  A  W  G  E  M  L  L  E  L  </first_frame>
            <second_frame>  L  H  Y  P  F  S  G  H  R  A  P  P  L  S  S  A  K  S  P  E  H  G  G  D  L  P  S  F  L  T  L  S  V  Q  S  Y  I  *  F  F  *  H  *  N  R  *  S  V  *  Q  L  P  E  N  S  K  F  M  F  I  F  A  S  *  C  V  F  V  C  V  N  S  S  T  E  N  S  C  S  W  W  N  L  *  V  K  H  V  *  W  *  K  N  D  E  L  Q  L  I  N  *  I  Y  I  E  R  *  D  V  Q  W  R  M  L  Q  L  R  S  H  G  E  T  S  *  R  V  *  W  R  I  V  E  *  G  L  P  E  K  S  L  L  R  R  I  L  R  R  R  L  R  R  R  D  R  C  M  S  R  R  R  L  R  R  L  W  R  S  R  R  V  L  R  T  K  S  K  V  S  R  R  L  G  E  K  C  C  W  N  * </second_frame>
            <third_frame>   S  T  T  P  F  P  A  T  V  H  R  H  S  P  P  Q  N  H  R  N  T  A  V  I  F  L  H  S  S  L  Y  Q  Y  N  P  T  Y  S  F  S  N  T  K  I  D  S  Q  S  N  S  Y  R  K  T  R  S  L  C  S  Y  L  L  R  N  V  C  L  Y  V  *  T  A  Q  L  K  T  R  V  A  G  G  I  Y  R  *  S  T  F  D  G  E  K  T  M  N  Y  S  *  S  T  R  Y  I  L  R  D  K  T  Y  N  G  G  C  C  S  C  E  V  M  E  R  R  A  S  E  F  S  G  G  *  W  N  K  V  C  R  R  N  L  C  S  D  V  F  Y  A  G  V  *  G  E  E  I  G  V  *  V  A  G  D  *  G  G  C  G  G  A  G  E  F  *  G  P  N  R  R  F  R  E  G  L  G  R  N  V  A  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7231" stop="6980"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRRTMADVAVAKSWRDELASLVEDSGIRFAGEISAPTYSTPAFEEKRSVYESPAIEEVVAEPESFKDQIEGFAKAWGEMLLEL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7544" stop="7335"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STTPFPATVHRHSPPQNHRNTAVIFLHSSLYQYNPTYSFSNTKIDSQSNSYRKTRSLCSYLLRNVCLYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9791" PGL_stop="12092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9791" e_stop="9903"/>
            <exon e_start="10565" e_stop="10845"/>
            <exon e_start="11709" e_stop="11744"/>
            <exon e_start="11840" e_stop="11916"/>
            <exon e_start="12010" e_stop="12092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9791" e_stop="9903" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.957">
            <gDNA_intron_boundary i_start="9904" i_stop="10564" i_length="661"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10565" e_stop="10845" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="10846" i_stop="11708" i_length="863"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11709" e_stop="11744" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11745" i_stop="11839" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11840" e_stop="11916" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.880">
            <gDNA_intron_boundary i_start="11917" i_stop="12009" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12010" e_stop="12092" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9791" stop="9903"/>
              <exon start="10565" stop="10845"/>
              <exon start="11709" stop="11744"/>
              <exon start="11840" stop="11916"/>
              <exon start="12010" stop="12092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCACCCTGCGCGTCTTCTTCTTCTTCTTCTTCCTTCTCCGGCGAACGCGAACCCAGACCAGTCCATCTCGCCATCGCCGTCGCCGTCGCCGTGAGATAATCGTGAGACATAT : TATTACCAAATATAAAGCTTGAAGGAGAGAGGGGAGCACAACAATGGCGAATGAAACAATGGCTGAACAACAAAAGAAACGAACGATGGAGGCATTAGAGCGAAGATTTGCTCAAGCAAAAGCTGAAATTCATCAACAGCAGCACAAGAACAAGAGAGTCGCTGTTACTACAACAAAAACTCTAGCTGAAAACAACATTGGAGTCACCACCCAGAGTATCAATTCTTCGCCTTCGCCACTCAAATCAACGACTACTTCCTCAGCTCCGTCATCCAAAAAAG : GCCATATATCTTTTTCTGGCCATACATCTGCTCAAG : ATGTTGAACTAAATAATCCAGCATACCTTCAGATATCCCATTCAGTAGACGATAATCTTCTGAAAATTACCACTGAG : ATTTCTGGTAAAAACACGACTGCTAACGATATTTTGCACGATCTTCTCCAACATGGTGATTCAGCTCAGAAATATATGCAGGG</gDNA_template>
            <first_frame> S  T  L  R  V  F  F  F  F  F  F  L  L  R  R  T  R  T  Q  T  S  P  S  R  H  R  R  R  R  R  R  E  I  I  V  R  H  I :   I  T  K  Y  K  A  *  R  R  E  G  S  T  T  M  A  N  E  T  M  A  E  Q  Q  K  K  R  T  M  E  A  L  E  R  R  F  A  Q  A  K  A  E  I  H  Q  Q  Q  H  K  N  K  R  V  A  V  T  T  T  K  T  L  A  E  N  N  I  G  V  T  T  Q  S  I  N  S  S  P  S  P  L  K  S  T  T  T  S  S  A  P  S  S  K  K   : G  H  I  S  F  S  G  H  T  S  A  Q   : D  V  E  L  N  N  P  A  Y  L  Q  I  S  H  S  V  D  D  N  L  L  K  I  T  T  E  :  I  S  G  K  N  T  T  A  N  D  I  L  H  D  L  L  Q  H  G  D  S  A  Q  K  Y  M  Q   </first_frame>
            <second_frame>  A  P  C  A  S  S  S  S  S  S  S  F  S  G  E  R  E  P  R  P  V  H  L  A  I  A  V  A  V  A  V  R  *  S  *  D  I   : L  L  P  N  I  K  L  E  G  E  R  G  A  Q  Q  W  R  M  K  Q  W  L  N  N  K  R  N  E  R  W  R  H  *  S  E  D  L  L  K  Q  K  L  K  F  I  N  S  S  T  R  T  R  E  S  L  L  L  Q  Q  K  L  *  L  K  T  T  L  E  S  P  P  R  V  S  I  L  R  L  R  H  S  N  Q  R  L  L  P  Q  L  R  H  P  K  K  :  A  I  Y  L  F  L  A  I  H  L  L  K  :  M  L  N  *  I  I  Q  H  T  F  R  Y  P  I  Q  *  T  I  I  F  *  K  L  P  L  R :   F  L  V  K  T  R  L  L  T  I  F  C  T  I  F  S  N  M  V  I  Q  L  R  N  I  C  R  </second_frame>
            <third_frame>   H  P  A  R  L  L  L  L  L  L  P  S  P  A  N  A  N  P  D  Q  S  I  S  P  S  P  S  P  S  P  *  D  N  R  E  T  Y  :  Y  Y  Q  I  *  S  L  K  E  R  G  E  H  N  N  G  E  *  N  N  G  *  T  T  K  E  T  N  D  G  G  I  R  A  K  I  C  S  S  K  S  *  N  S  S  T  A  A  Q  E  Q  E  S  R  C  Y  Y  N  K  N  S  S  *  K  Q  H  W  S  H  H  P  E  Y  Q  F  F  A  F  A  T  Q  I  N  D  Y  F  L  S  S  V  I  Q  K  R :   P  Y  I  F  F  W  P  Y  I  C  S  R :   C  *  T  K  *  S  S  I  P  S  D  I  P  F  S  R  R  *  S  S  E  N  Y  H  *   : D  F  W  *  K  H  D  C  *  R  Y  F  A  R  S  S  P  T  W  *  F  S  S  E  I  Y  A  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10587" stop="10845"/>
                    <exon start="11709" stop="11744"/>
                    <exon start="11840" stop="11916"/>
                    <exon start="12010" stop="12090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RREGSTTMANETMAEQQKKRTMEALERRFAQAKAEIHQQQHKNKRVAVTTTKTLAENNIGVTTQSINSSPSPLKSTTTSSAPSSKKGHISFSGHTSAQDVELNNPAYLQISHSVDDNLLKITTEISGKNTTANDILHDLLQHGDSAQKYMQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18867" PGL_stop="22609"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18867" e_stop="18952"/>
            <exon e_start="19570" e_stop="19750"/>
            <exon e_start="19879" e_stop="21841"/>
            <exon e_start="22591" e_stop="22609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.892" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.597" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.296" e_score="1.000"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18867" e_stop="18952" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.892" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18953" i_stop="19569" i_length="617"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19570" e_stop="19750" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.597" acc_prob="0.968">
            <gDNA_intron_boundary i_start="19751" i_stop="19878" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19879" e_stop="21841" e_length="1963"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.296">
            <gDNA_intron_boundary i_start="21842" i_stop="22590" i_length="749"/>
          </intron>
          <exon e_serial="4" e_score="0.579">
            <gDNA_exon_boundary e_start="22591" e_stop="22609" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18867" stop="18952"/>
              <exon start="19570" stop="19750"/>
              <exon start="19879" stop="21841"/>
              <exon start="22591" stop="22609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAACTTTAGTACAAAGCTCATTTAGTTTCTCATTTCTACATTTTGCTGCTGAGAGGAAATTGATATGCAGACACCAAAAGGAAG : GACTGTTTCTGTGGAAGTGCCTCAAAGGATATCTGCTGCTACACTAAAGACAGCTCGAAAGCTCAGGACTCCAGGGTCAGATGTTGATTCTGTTTCATCTCCGAATCCAGCCAACAGGACACCTAAAGATAGGAGTCCGAAAGTTGTTTGTCGCCGGTCACCACGGAGTCCAGTGATAGAG : AAGAAGCGTCCTGTCAAAGCATCTGACTTGGAAACGCAGCTTGCTCAACTCCAAGATGAGCTAAAGAAGGCGAAGGACCAACTCAGTTCTTCTGAATCATTGAAGAAAAGGGCTCAACAGGATGCTGATGAAGCTAAAAAGCAGCTTGTGGTCATGTCAGGAAAGCTCGAGGACTCTAAGAAGCAGCTGCTTGATCTCTCAGATTCAGAAGAAGCTCGACTGCTGGAGTTGCGCAAGATATCACAGGATCGAGACCGAGCATGGCAATCTGAGCTTGAGGCTATCCAGAAGCAGCATGAGTTGGACTCTGCTGCTTTGGCCTCTGCCATGAATGAAATACAGAAACTTAAACTTCAGCTGGACCGAGTGGCTGATTGTGAAGCCGCTCAAGCTCATCATGCTGAGTCAGCTTATGTTGAGATACAAAGCTTAAGGATTGAACTTACAAAGACCCTTACATTGGTTGATAAACTGAGAAACCAGCTTAACGATAGCAAGGAATCTGAGGCTTGTTCATTTGAAGAAGTGAGCAAAGCTCAGATGCAGCTGGAAGTGGCCAAGATAACCGAGGATACTCTACGTTCTGAAGGTTTGAAAGCAATGGAGGCTTGCAGGACCTTGTCTTTGGAGTTGGAAAAATCAAAGGATCGAGTAGCTTCATTGGAGGAGCTTGTCAGAAAACTCCAGTCTGGTCCAGTAGACTCTTCCGAAAGTTCTGTAGCTGCTGAAGGAAACAGCTCAAATGTAGAAGCTGATAAACTAAACATTGAGCTGAGTACCATCCAAGTTGAGGTAAGTCAATTAAGAGCTGCTTTGGAGGATTCCGAGAGAAAGTATCAGGAAGAATACATCCAGAACACCTTGCAGACACGAAGTGCTTATGAACTGGTGGAGCGCACAAAATCCGAATCACTTCAGAGGGAGGCTGAATGGGAAAGAAAACTAAATGAAGCAAAATCGGAAGTGGAAGAGTTGAAAGAAAAACTGATGAATGTTGAAGCTCAACTTGTTGATATTTCAGATGTGAATAAGGGGCTAAGTCTGCATGTTGAGCAAATGCAGTCAACTGATAAAGAGTTTGAGTTAGCTGCTCAACTAAAGAACTCAGAGTCAGTTTTGGGAGATCTGAGAGAAAATCTATTAGATAAAGAGACAGAGTTGCTGAGTCTTATGGAGGAGAATGAACAGTTGAAGTCGGAAATCAGTAAGAGGGAATCGGAGAGTACCAAAGTTAACAACGAGGCACTTGCCTTAGTAGAAGAAGCAAAAACTGCAGAAAGAGAGGCCCTGATGAAGCTGGGAGATTTGACGGAGGAAGCAGACAAAAGCAGCAGAAAGGTAACTCGTGTCACTGACGAGCTGAATGCAGCACAGGCTGCAAACTCGGAGATCGAAACCGAGCTAAGGAGGTTAAAAGTGCAATGTGATCAATGGAGGAAGGCTGCTGAAGCAGCTGCATCTATGCTTTCAACTGGAAACAACGGGAAATATGTCGAGAGAACAGGTTCTTTAGACTACCACACTATCGGTGGAAAGCTTGGTTCACCACTCTTGGATGACTTGGATGATGACTCGCCAAAGAAGAAGAACAACAACATGTTGAAGAAACTCGGTTTTTTATTGAAAAAGGGACAGAAGTAAATAACGCGCTATCGTGCAGGTTGCTTTCACATGATCATTGTTCCAATTCTTCAGTAATCTTGATCATGTAAACATTTTTCATCATTTGTTAATAAATCTACTAAGTTTCCTTCTCAGGACTTGCTGAGCTGATTCAGCCTTCATGGAATTAATCGTTTTCGCGGATTTTTGTATAGCTGTTTGGAAATCTCCAGTTTGTATGGCAATTGTTATTTTTAGATACAGACTGTTGTATTTTCCAAGTATTTGTTGCAAGTGTAATGATAGCTATGAGAGATGATTAATGGTAAAATTTGCTCTTTCATGTCATAGATGACATTTT : CCATGAAAGGTAAAAATTA</gDNA_template>
            <first_frame> V  N  F  S  T  K  L  I  *  F  L  I  S  T  F  C  C  *  E  E  I  D  M  Q  T  P  K  G  R :   T  V  S  V  E  V  P  Q  R  I  S  A  A  T  L  K  T  A  R  K  L  R  T  P  G  S  D  V  D  S  V  S  S  P  N  P  A  N  R  T  P  K  D  R  S  P  K  V  V  C  R  R  S  P  R  S  P  V  I  E  :  K  K  R  P  V  K  A  S  D  L  E  T  Q  L  A  Q  L  Q  D  E  L  K  K  A  K  D  Q  L  S  S  S  E  S  L  K  K  R  A  Q  Q  D  A  D  E  A  K  K  Q  L  V  V  M  S  G  K  L  E  D  S  K  K  Q  L  L  D  L  S  D  S  E  E  A  R  L  L  E  L  R  K  I  S  Q  D  R  D  R  A  W  Q  S  E  L  E  A  I  Q  K  Q  H  E  L  D  S  A  A  L  A  S  A  M  N  E  I  Q  K  L  K  L  Q  L  D  R  V  A  D  C  E  A  A  Q  A  H  H  A  E  S  A  Y  V  E  I  Q  S  L  R  I  E  L  T  K  T  L  T  L  V  D  K  L  R  N  Q  L  N  D  S  K  E  S  E  A  C  S  F  E  E  V  S  K  A  Q  M  Q  L  E  V  A  K  I  T  E  D  T  L  R  S  E  G  L  K  A  M  E  A  C  R  T  L  S  L  E  L  E  K  S  K  D  R  V  A  S  L  E  E  L  V  R  K  L  Q  S  G  P  V  D  S  S  E  S  S  V  A  A  E  G  N  S  S  N  V  E  A  D  K  L  N  I  E  L  S  T  I  Q  V  E  V  S  Q  L  R  A  A  L  E  D  S  E  R  K  Y  Q  E  E  Y  I  Q  N  T  L  Q  T  R  S  A  Y  E  L  V  E  R  T  K  S  E  S  L  Q  R  E  A  E  W  E  R  K  L  N  E  A  K  S  E  V  E  E  L  K  E  K  L  M  N  V  E  A  Q  L  V  D  I  S  D  V  N  K  G  L  S  L  H  V  E  Q  M  Q  S  T  D  K  E  F  E  L  A  A  Q  L  K  N  S  E  S  V  L  G  D  L  R  E  N  L  L  D  K  E  T  E  L  L  S  L  M  E  E  N  E  Q  L  K  S  E  I  S  K  R  E  S  E  S  T  K  V  N  N  E  A  L  A  L  V  E  E  A  K  T  A  E  R  E  A  L  M  K  L  G  D  L  T  E  E  A  D  K  S  S  R  K  V  T  R  V  T  D  E  L  N  A  A  Q  A  A  N  S  E  I  E  T  E  L  R  R  L  K  V  Q  C  D  Q  W  R  K  A  A  E  A  A  A  S  M  L  S  T  G  N  N  G  K  Y  V  E  R  T  G  S  L  D  Y  H  T  I  G  G  K  L  G  S  P  L  L  D  D  L  D  D  D  S  P  K  K  K  N  N  N  M  L  K  K  L  G  F  L  L  K  K  G  Q  K  *  I  T  R  Y  R  A  G  C  F  H  M  I  I  V  P  I  L  Q  *  S  *  S  C  K  H  F  S  S  F  V  N  K  S  T  K  F  P  S  Q  D  L  L  S  *  F  S  L  H  G  I  N  R  F  R  G  F  L  Y  S  C  L  E  I  S  S  L  Y  G  N  C  Y  F  *  I  Q  T  V  V  F  S  K  Y  L  L  Q  V  *  *  *  L  *  E  M  I  N  G  K  I  C  S  F  M  S  *  M  T  F   : S  M  K  G  K  N   </first_frame>
            <second_frame>  *  T  L  V  Q  S  S  F  S  F  S  F  L  H  F  A  A  E  R  K  L  I  C  R  H  Q  K  E   : G  L  F  L  W  K  C  L  K  G  Y  L  L  L  H  *  R  Q  L  E  S  S  G  L  Q  G  Q  M  L  I  L  F  H  L  R  I  Q  P  T  G  H  L  K  I  G  V  R  K  L  F  V  A  G  H  H  G  V  Q  *  *  R :   R  S  V  L  S  K  H  L  T  W  K  R  S  L  L  N  S  K  M  S  *  R  R  R  R  T  N  S  V  L  L  N  H  *  R  K  G  L  N  R  M  L  M  K  L  K  S  S  L  W  S  C  Q  E  S  S  R  T  L  R  S  S  C  L  I  S  Q  I  Q  K  K  L  D  C  W  S  C  A  R  Y  H  R  I  E  T  E  H  G  N  L  S  L  R  L  S  R  S  S  M  S  W  T  L  L  L  W  P  L  P  *  M  K  Y  R  N  L  N  F  S  W  T  E  W  L  I  V  K  P  L  K  L  I  M  L  S  Q  L  M  L  R  Y  K  A  *  G  L  N  L  Q  R  P  L  H  W  L  I  N  *  E  T  S  L  T  I  A  R  N  L  R  L  V  H  L  K  K  *  A  K  L  R  C  S  W  K  W  P  R  *  P  R  I  L  Y  V  L  K  V  *  K  Q  W  R  L  A  G  P  C  L  W  S  W  K  N  Q  R  I  E  *  L  H  W  R  S  L  S  E  N  S  S  L  V  Q  *  T  L  P  K  V  L  *  L  L  K  E  T  A  Q  M  *  K  L  I  N  *  T  L  S  *  V  P  S  K  L  R  *  V  N  *  E  L  L  W  R  I  P  R  E  S  I  R  K  N  T  S  R  T  P  C  R  H  E  V  L  M  N  W  W  S  A  Q  N  P  N  H  F  R  G  R  L  N  G  K  E  N  *  M  K  Q  N  R  K  W  K  S  *  K  K  N  *  *  M  L  K  L  N  L  L  I  F  Q  M  *  I  R  G  *  V  C  M  L  S  K  C  S  Q  L  I  K  S  L  S  *  L  L  N  *  R  T  Q  S  Q  F  W  E  I  *  E  K  I  Y  *  I  K  R  Q  S  C  *  V  L  W  R  R  M  N  S  *  S  R  K  S  V  R  G  N  R  R  V  P  K  L  T  T  R  H  L  P  *  *  K  K  Q  K  L  Q  K  E  R  P  *  *  S  W  E  I  *  R  R  K  Q  T  K  A  A  E  R  *  L  V  S  L  T  S  *  M  Q  H  R  L  Q  T  R  R  S  K  P  S  *  G  G  *  K  C  N  V  I  N  G  G  R  L  L  K  Q  L  H  L  C  F  Q  L  E  T  T  G  N  M  S  R  E  Q  V  L  *  T  T  T  L  S  V  E  S  L  V  H  H  S  W  M  T  W  M  M  T  R  Q  R  R  R  T  T  T  C  *  R  N  S  V  F  Y  *  K  R  D  R  S  K  *  R  A  I  V  Q  V  A  F  T  *  S  L  F  Q  F  F  S  N  L  D  H  V  N  I  F  H  H  L  L  I  N  L  L  S  F  L  L  R  T  C  *  A  D  S  A  F  M  E  L  I  V  F  A  D  F  C  I  A  V  W  K  S  P  V  C  M  A  I  V  I  F  R  Y  R  L  L  Y  F  P  S  I  C  C  K  C  N  D  S  Y  E  R  *  L  M  V  K  F  A  L  S  C  H  R  *  H  F  :  P  *  K  V  K  I  </second_frame>
            <third_frame>   E  L  *  Y  K  A  H  L  V  S  H  F  Y  I  L  L  L  R  G  N  *  Y  A  D  T  K  R  K  :  D  C  F  C  G  S  A  S  K  D  I  C  C  Y  T  K  D  S  S  K  A  Q  D  S  R  V  R  C  *  F  C  F  I  S  E  S  S  Q  Q  D  T  *  R  *  E  S  E  S  C  L  S  P  V  T  T  E  S  S  D  R   : E  E  A  S  C  Q  S  I  *  L  G  N  A  A  C  S  T  P  R  *  A  K  E  G  E  G  P  T  Q  F  F  *  I  I  E  E  K  G  S  T  G  C  *  *  S  *  K  A  A  C  G  H  V  R  K  A  R  G  L  *  E  A  A  A  *  S  L  R  F  R  R  S  S  T  A  G  V  A  Q  D  I  T  G  S  R  P  S  M  A  I  *  A  *  G  Y  P  E  A  A  *  V  G  L  C  C  F  G  L  C  H  E  *  N  T  E  T  *  T  S  A  G  P  S  G  *  L  *  S  R  S  S  S  S  C  *  V  S  L  C  *  D  T  K  L  K  D  *  T  Y  K  D  P  Y  I  G  *  *  T  E  K  P  A  *  R  *  Q  G  I  *  G  L  F  I  *  R  S  E  Q  S  S  D  A  A  G  S  G  Q  D  N  R  G  Y  S  T  F  *  R  F  E  S  N  G  G  L  Q  D  L  V  F  G  V  G  K  I  K  G  S  S  S  F  I  G  G  A  C  Q  K  T  P  V  W  S  S  R  L  F  R  K  F  C  S  C  *  R  K  Q  L  K  C  R  S  *  *  T  K  H  *  A  E  Y  H  P  S  *  G  K  S  I  K  S  C  F  G  G  F  R  E  K  V  S  G  R  I  H  P  E  H  L  A  D  T  K  C  L  *  T  G  G  A  H  K  I  R  I  T  S  E  G  G  *  M  G  K  K  T  K  *  S  K  I  G  S  G  R  V  E  R  K  T  D  E  C  *  S  S  T  C  *  Y  F  R  C  E  *  G  A  K  S  A  C  *  A  N  A  V  N  *  *  R  V  *  V  S  C  S  T  K  E  L  R  V  S  F  G  R  S  E  R  K  S  I  R  *  R  D  R  V  A  E  S  Y  G  G  E  *  T  V  E  V  G  N  Q  *  E  G  I  G  E  Y  Q  S  *  Q  R  G  T  C  L  S  R  R  S  K  N  C  R  K  R  G  P  D  E  A  G  R  F  D  G  G  S  R  Q  K  Q  Q  K  G  N  S  C  H  *  R  A  E  C  S  T  G  C  K  L  G  D  R  N  R  A  K  E  V  K  S  A  M  *  S  M  E  E  G  C  *  S  S  C  I  Y  A  F  N  W  K  Q  R  E  I  C  R  E  N  R  F  F  R  L  P  H  Y  R  W  K  A  W  F  T  T  L  G  *  L  G  *  *  L  A  K  E  E  E  Q  Q  H  V  E  E  T  R  F  F  I  E  K  G  T  E  V  N  N  A  L  S  C  R  L  L  S  H  D  H  C  S  N  S  S  V  I  L  I  M  *  T  F  F  I  I  C  *  *  I  Y  *  V  S  F  S  G  L  A  E  L  I  Q  P  S  W  N  *  S  F  S  R  I  F  V  *  L  F  G  N  L  Q  F  V  W  Q  L  L  F  L  D  T  D  C  C  I  F  Q  V  F  V  A  S  V  M  I  A  M  R  D  D  *  W  *  N  L  L  F  H  V  I  D  D  I  F :   H  E  R  *  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18921" stop="18952"/>
                    <exon start="19570" stop="19750"/>
                    <exon start="19879" stop="21519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1851</number_coding_nucleotides>
                  <number_encoded_amino_acids>617</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEIDMQTPKGRTVSVEVPQRISAATLKTARKLRTPGSDVDSVSSPNPANRTPKDRSPKVVCRRSPRSPVIEKKRPVKASDLETQLAQLQDELKKAKDQLSSSESLKKRAQQDADEAKKQLVVMSGKLEDSKKQLLDLSDSEEARLLELRKISQDRDRAWQSELEAIQKQHELDSAALASAMNEIQKLKLQLDRVADCEAAQAHHAESAYVEIQSLRIELTKTLTLVDKLRNQLNDSKESEACSFEEVSKAQMQLEVAKITEDTLRSEGLKAMEACRTLSLELEKSKDRVASLEELVRKLQSGPVDSSESSVAAEGNSSNVEADKLNIELSTIQVEVSQLRAALEDSERKYQEEYIQNTLQTRSAYELVERTKSESLQREAEWERKLNEAKSEVEELKEKLMNVEAQLVDISDVNKGLSLHVEQMQSTDKEFELAAQLKNSESVLGDLRENLLDKETELLSLMEENEQLKSEISKRESESTKVNNEALALVEEAKTAEREALMKLGDLTEEADKSSRKVTRVTDELNAAQAANSEIETELRRLKVQCDQWRKAAEAAASMLSTGNNGKYVERTGSLDYHTIGGKLGSPLLDDLDDDSPKKKNNNMLKKLGFLLKKGQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23057" PGL_stop="26250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23057" e_stop="23114"/>
            <exon e_start="23987" e_stop="24142"/>
            <exon e_start="24225" e_stop="24351"/>
            <exon e_start="24436" e_stop="24731"/>
            <exon e_start="25990" e_stop="26012"/>
            <exon e_start="26239" e_stop="26250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.180" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.072" e_score="0.696"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23057" e_stop="23114" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23115" i_stop="23986" i_length="872"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23987" e_stop="24142" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24143" i_stop="24224" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24225" e_stop="24351" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24352" i_stop="24435" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24436" e_stop="24731" e_length="296"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.180">
            <gDNA_intron_boundary i_start="24732" i_stop="25989" i_length="1258"/>
          </intron>
          <exon e_serial="5" e_score="0.696">
            <gDNA_exon_boundary e_start="25990" e_stop="26012" e_length="23"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.072">
            <gDNA_intron_boundary i_start="26013" i_stop="26238" i_length="226"/>
          </intron>
          <exon e_serial="6" e_score="0.583">
            <gDNA_exon_boundary e_start="26239" e_stop="26250" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23057" stop="23114"/>
              <exon start="23987" stop="24142"/>
              <exon start="24225" stop="24351"/>
              <exon start="24436" stop="24731"/>
              <exon start="25990" stop="26012"/>
              <exon start="26239" stop="26250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTCTTCTTCAACCTCTGTAAACCGGAGTAGTCATCTTCAATCAGCAATCATGGG : GAAGACACGTGGAATGGGAGCTGGACGCAAGCTGAAGTCCCACCGCAGAAGACAAAGGTGGGCTGACAAGTCCTACAAGAAGTCCCATCTTGGTAACGAATGGAAGAAGCCATTTGCTGGATCTTCCCATGCTAAAGGCATTGTGCTCGAGAAGAT : AGGTATTGAGGCTAAACAGCCAAATTCTGCTATTCGTAAATGTGCTAGGGTTCAACTCATCAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCTAATGATGGTTGCTTGAACTACATCGAAGAAAAC : GATGAAGTGCTGATTGCTGGATTTGGTCGTAAAGGTCACGCCGTGGGAGATATTCCCGGAGTTCGTTTCAAGGTGGTGAAGGTTTCTGGTGTCTCTCTTCTAGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAATTTATCTCCTCTCTTTCTTTTTTTTTGCAAAAATACCCTCGAGCCTGCAATGGACTTTTAGCTTGTATTCAAGTTATTATTTTGTCAACTTCTATTTAATTAGACATTGTACTGGAATTTTGGTTCATTAATTTTGAGTTCGAATGTTACCTTAA : CTCAACGCAAAAAGAAAAAAAAA : GATAGAAACACA</gDNA_template>
            <first_frame> T  L  L  L  Q  P  L  *  T  G  V  V  I  F  N  Q  Q  S  W   : G  R  H  V  E  W  E  L  D  A  S  *  S  P  T  A  E  D  K  G  G  L  T  S  P  T  R  S  P  I  L  V  T  N  G  R  S  H  L  L  D  L  P  M  L  K  A  L  C  S  R  R   : *  V  L  R  L  N  S  Q  I  L  L  F  V  N  V  L  G  F  N  S  S  R  M  G  K  R  L  L  L  L  S  L  M  M  V  A  *  T  T  S  K  K  T :   M  K  C  *  L  L  D  L  V  V  K  V  T  P  W  E  I  F  P  E  F  V  S  R  W  *  R  F  L  V  S  L  F  *  L  S  S  R  R  R  R  R  S  Q  D  L  N  L  S  P  L  F  L  F  F  C  K  N  T  L  E  P  A  M  D  F  *  L  V  F  K  L  L  F  C  Q  L  L  F  N  *  T  L  Y  W  N  F  G  S  L  I  L  S  S  N  V  T  L   : T  Q  R  K  K  K  K  K  :  D  R  N  T </first_frame>
            <second_frame>  L  F  F  F  N  L  C  K  P  E  *  S  S  S  I  S  N  H  G  :  E  D  T  W  N  G  S  W  T  Q  A  E  V  P  P  Q  K  T  K  V  G  *  Q  V  L  Q  E  V  P  S  W  *  R  M  E  E  A  I  C  W  I  F  P  C  *  R  H  C  A  R  E  D  :  R  Y  *  G  *  T  A  K  F  C  Y  S  *  M  C  *  G  S  T  H  Q  E  W  E  K  D  C  C  F  C  P  *  *  W  L  L  E  L  H  R  R  K   : R  *  S  A  D  C  W  I  W  S  *  R  S  R  R  G  R  Y  S  R  S  S  F  Q  G  G  E  G  F  W  C  L  S  S  S  S  L  Q  G  E  E  G  E  A  K  I  L  I  Y  L  L  S  F  F  F  F  A  K  I  P  S  S  L  Q  W  T  F  S  L  Y  S  S  Y  Y  F  V  N  F  Y  L  I  R  H  C  T  G  I  L  V  H  *  F  *  V  R  M  L  P  *  :  L  N  A  K  R  K  K  K :   I  E  T   </second_frame>
            <third_frame>   S  S  S  S  T  S  V  N  R  S  S  H  L  Q  S  A  I  M  G :   K  T  R  G  M  G  A  G  R  K  L  K  S  H  R  R  R  Q  R  W  A  D  K  S  Y  K  K  S  H  L  G  N  E  W  K  K  P  F  A  G  S  S  H  A  K  G  I  V  L  E  K  I :   G  I  E  A  K  Q  P  N  S  A  I  R  K  C  A  R  V  Q  L  I  K  N  G  K  K  I  A  A  F  V  P  N  D  G  C  L  N  Y  I  E  E  N  :  D  E  V  L  I  A  G  F  G  R  K  G  H  A  V  G  D  I  P  G  V  R  F  K  V  V  K  V  S  G  V  S  L  L  A  L  F  K  E  K  K  E  K  P  R  S  *  F  I  S  S  L  S  F  F  L  Q  K  Y  P  R  A  C  N  G  L  L  A  C  I  Q  V  I  I  L  S  T  S  I  *  L  D  I  V  L  E  F  W  F  I  N  F  E  F  E  C  Y  L  N :   S  T  Q  K  E  K  K   : R  *  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23059" stop="23114"/>
                    <exon start="23987" stop="24142"/>
                    <exon start="24225" stop="24351"/>
                    <exon start="24436" stop="24576"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSTSVNRSSHLQSAIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27002" PGL_stop="25881"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27002" e_stop="26259"/>
            <exon e_start="26107" e_stop="25881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="27002" e_stop="26259" e_length="744"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26258" i_stop="26108" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26107" e_stop="25881" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27002" stop="26259"/>
              <exon start="26107" stop="25881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332601" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCACAGTGTTTTGAACAATGATATCCCGGCTGGTTTGGCTGCAATTAAGGGTCAAAAACAAGGTGTTATGGAGAATGAAATGAACTTGGATACTATTGAGAAGATTGACATCAAGCCTGTTGAGGTTTCTATTACTGAAAACATTAGACGGTGTCAAACAGAGGATGAAGATGGAGTAGGTGTTCAGTGCAATGGTAATTATAATTTGGACGTGCCTAGCCAGATGAATGAGATGAACCTGGAGGATAATGAAAATGGTTATAATTTGGACATGCCTAGCCAGATGGATGAGATGAACCTGGAGGATGATGTAAATGGTGACCTCAAACATACCAGGACTGATCATGTCGAGAGAGAATATGACTCAACTTTCAGAGGTGATGAAGGTAGAGTAGATGTCAAGGATGATTTGAATACTCCTGAGAAAACAAATGCAAAGAAATATGTGTGCGCAAATCAAGCGGACCAATCAAACAGTCAGGTAGAAGAAGTCAGCATGACCCCATTTAGCAATAAGGTTGAATCTCTAATGAACAAATTGGCCTATTTGTCACTAAATACCCCTCAGACAGCAGTTAGAAGGATCCCCTTTGCTGTCAAGAATTCTTCCGGTGATTGTCTTGATTTTTGTGAAGGAGCTGGACATGTAGTTGGGAAGACTGATTTAGATTTGCCTTCTTTGCAAATCGATCATAAAGAGAACAACAATTTATGAGGATAGCCAAGCATGCTTCATTGCAAG : AGATTGTTAGGCTTCAAGAACAAGGCTAGCTTCCGGGGGTGGCAAAAGCATCACGTTTGTATAGCACACATGACGAAGGCTTAAGTGATGCATGCTTTTTTTTTCTTTTTGCGTTGAGCTAAGATCAAGGTTTTTGAGAACATATGTCTGTGTAAGTACTGATATGTGTATTACATGAATGTAAAAACCTTGGATGTCTTTATATGTAAGAAGAATTACAGTCAAAA</gDNA_template>
            <first_frame> N  H  S  V  L  N  N  D  I  P  A  G  L  A  A  I  K  G  Q  K  Q  G  V  M  E  N  E  M  N  L  D  T  I  E  K  I  D  I  K  P  V  E  V  S  I  T  E  N  I  R  R  C  Q  T  E  D  E  D  G  V  G  V  Q  C  N  G  N  Y  N  L  D  V  P  S  Q  M  N  E  M  N  L  E  D  N  E  N  G  Y  N  L  D  M  P  S  Q  M  D  E  M  N  L  E  D  D  V  N  G  D  L  K  H  T  R  T  D  H  V  E  R  E  Y  D  S  T  F  R  G  D  E  G  R  V  D  V  K  D  D  L  N  T  P  E  K  T  N  A  K  K  Y  V  C  A  N  Q  A  D  Q  S  N  S  Q  V  E  E  V  S  M  T  P  F  S  N  K  V  E  S  L  M  N  K  L  A  Y  L  S  L  N  T  P  Q  T  A  V  R  R  I  P  F  A  V  K  N  S  S  G  D  C  L  D  F  C  E  G  A  G  H  V  V  G  K  T  D  L  D  L  P  S  L  Q  I  D  H  K  E  N  N  N  L  *  G  *  P  S  M  L  H  C  K  :  R  L  L  G  F  K  N  K  A  S  F  R  G  W  Q  K  H  H  V  C  I  A  H  M  T  K  A  *  V  M  H  A  F  F  F  F  L  R  *  A  K  I  K  V  F  E  N  I  C  L  C  K  Y  *  Y  V  Y  Y  M  N  V  K  T  L  D  V  F  I  C  K  K  N  Y  S  Q   </first_frame>
            <second_frame>  I  T  V  F  *  T  M  I  S  R  L  V  W  L  Q  L  R  V  K  N  K  V  L  W  R  M  K  *  T  W  I  L  L  R  R  L  T  S  S  L  L  R  F  L  L  L  K  T  L  D  G  V  K  Q  R  M  K  M  E  *  V  F  S  A  M  V  I  I  I  W  T  C  L  A  R  *  M  R  *  T  W  R  I  M  K  M  V  I  I  W  T  C  L  A  R  W  M  R  *  T  W  R  M  M  *  M  V  T  S  N  I  P  G  L  I  M  S  R  E  N  M  T  Q  L  S  E  V  M  K  V  E  *  M  S  R  M  I  *  I  L  L  R  K  Q  M  Q  R  N  M  C  A  Q  I  K  R  T  N  Q  T  V  R  *  K  K  S  A  *  P  H  L  A  I  R  L  N  L  *  *  T  N  W  P  I  C  H  *  I  P  L  R  Q  Q  L  E  G  S  P  L  L  S  R  I  L  P  V  I  V  L  I  F  V  K  E  L  D  M  *  L  G  R  L  I  *  I  C  L  L  C  K  S  I  I  K  R  T  T  I  Y  E  D  S  Q  A  C  F  I  A  R :   D  C  *  A  S  R  T  R  L  A  S  G  G  G  K  S  I  T  F  V  *  H  T  *  R  R  L  K  *  C  M  L  F  F  S  F  C  V  E  L  R  S  R  F  L  R  T  Y  V  C  V  S  T  D  M  C  I  T  *  M  *  K  P  W  M  S  L  Y  V  R  R  I  T  V  K  </second_frame>
            <third_frame>   S  Q  C  F  E  Q  *  Y  P  G  W  F  G  C  N  *  G  S  K  T  R  C  Y  G  E  *  N  E  L  G  Y  Y  *  E  D  *  H  Q  A  C  *  G  F  Y  Y  *  K  H  *  T  V  S  N  R  G  *  R  W  S  R  C  S  V  Q  W  *  L  *  F  G  R  A  *  P  D  E  *  D  E  P  G  G  *  *  K  W  L  *  F  G  H  A  *  P  D  G  *  D  E  P  G  G  *  C  K  W  *  P  Q  T  Y  Q  D  *  S  C  R  E  R  I  *  L  N  F  Q  R  *  *  R  *  S  R  C  Q  G  *  F  E  Y  S  *  E  N  K  C  K  E  I  C  V  R  K  S  S  G  P  I  K  Q  S  G  R  R  S  Q  H  D  P  I  *  Q  *  G  *  I  S  N  E  Q  I  G  L  F  V  T  K  Y  P  S  D  S  S  *  K  D  P  L  C  C  Q  E  F  F  R  *  L  S  *  F  L  *  R  S  W  T  C  S  W  E  D  *  F  R  F  A  F  F  A  N  R  S  *  R  E  Q  Q  F  M  R  I  A  K  H  A  S  L  Q   : E  I  V  R  L  Q  E  Q  G  *  L  P  G  V  A  K  A  S  R  L  Y  S  T  H  D  E  G  L  S  D  A  C  F  F  F  L  F  A  L  S  *  D  Q  G  F  *  E  H  M  S  V  *  V  L  I  C  V  L  H  E  C  K  N  L  G  C  L  Y  M  *  E  E  L  Q  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27002" stop="26286"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHSVLNNDIPAGLAAIKGQKQGVMENEMNLDTIEKIDIKPVEVSITENIRRCQTEDEDGVGVQCNGNYNLDVPSQMNEMNLEDNENGYNLDMPSQMDEMNLEDDVNGDLKHTRTDHVEREYDSTFRGDEGRVDVKDDLNTPEKTNAKKYVCANQADQSNSQVEEVSMTPFSNKVESLMNKLAYLSLNTPQTAVRRIPFAVKNSSGDCLDFCEGAGHVVGKTDLDLPSLQIDHKENNNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="53204" PGL_stop="54171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53204" e_stop="53234"/>
            <exon e_start="53763" e_stop="54171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="0.871"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.871">
            <gDNA_exon_boundary e_start="53204" e_stop="53234" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="53235" i_stop="53762" i_length="528"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="53763" e_stop="54171" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53204" stop="53234"/>
              <exon start="53763" stop="54171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACAAGCGACTCTCTGAGCATATTATGTCA : CTTCATGCAAAGAGTGTAGAGCAGCCACCAGTCGCAAAACGGTTATGTACAGGTTTGCCTTTTGCCAACCATTATCTCAGCGGGAAATATTTTTATACAAATTGCTCTTAATTTTTCTTTGCAGCCTCGCTGGATGTTGGAGAAATTGACATGAATACAAAGCAGGGTTCTTTAGTTGCAAGGCTGAGACTTGACCCTAAGAAAGACGGTGGTTTTGTTCCATTGCCTGCCCCTCTTCTGCGTAAATACATTGCTTATGCAAGAACTTATATATTTCCTAGGTTGTCAAATGCGCTTCCTTTTATGTTTGAAAGTTTTAGCTACTCTTTGAAACGTTCATTTATCTTCTTGTCATTTGGTGCAAGGATGACAAAACCAGCAGCAGAAATCTTGCAGAAGTTTTACTTGA</gDNA_template>
            <first_frame> G  Q  A  T  L  *  A  Y  Y  V   : T  S  C  K  E  C  R  A  A  T  S  R  K  T  V  M  Y  R  F  A  F  C  Q  P  L  S  Q  R  E  I  F  L  Y  K  L  L  L  I  F  L  C  S  L  A  G  C  W  R  N  *  H  E  Y  K  A  G  F  F  S  C  K  A  E  T  *  P  *  E  R  R  W  F  C  S  I  A  C  P  S  S  A  *  I  H  C  L  C  K  N  L  Y  I  S  *  V  V  K  C  A  S  F  Y  V  *  K  F  *  L  L  F  E  T  F  I  Y  L  L  V  I  W  C  K  D  D  K  T  S  S  R  N  L  A  E  V  L  L   </first_frame>
            <second_frame>  D  K  R  L  S  E  H  I  M  S  :  L  H  A  K  S  V  E  Q  P  P  V  A  K  R  L  C  T  G  L  P  F  A  N  H  Y  L  S  G  K  Y  F  Y  T  N  C  S  *  F  F  F  A  A  S  L  D  V  G  E  I  D  M  N  T  K  Q  G  S  L  V  A  R  L  R  L  D  P  K  K  D  G  G  F  V  P  L  P  A  P  L  L  R  K  Y  I  A  Y  A  R  T  Y  I  F  P  R  L  S  N  A  L  P  F  M  F  E  S  F  S  Y  S  L  K  R  S  F  I  F  L  S  F  G  A  R  M  T  K  P  A  A  E  I  L  Q  K  F  Y  L  </second_frame>
            <third_frame>   T  S  D  S  L  S  I  L  C  H :   F  M  Q  R  V  *  S  S  H  Q  S  Q  N  G  Y  V  Q  V  C  L  L  P  T  I  I  S  A  G  N  I  F  I  Q  I  A  L  N  F  S  L  Q  P  R  W  M  L  E  K  L  T  *  I  Q  S  R  V  L  *  L  Q  G  *  D  L  T  L  R  K  T  V  V  L  F  H  C  L  P  L  F  C  V  N  T  L  L  M  Q  E  L  I  Y  F  L  G  C  Q  M  R  F  L  L  C  L  K  V  L  A  T  L  *  N  V  H  L  S  S  C  H  L  V  Q  G  *  Q  N  Q  Q  Q  K  S  C  R  S  F  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53874" stop="54170"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFAASLDVGEIDMNTKQGSLVARLRLDPKKDGGFVPLPAPLLRKYIAYARTYIFPRLSNALPFMFESFSYSLKRSFIFLSFGARMTKPAAEILQKFYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="56052" PGL_stop="55320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56052" e_stop="55320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56052" e_stop="55320" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56052" stop="55320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344989" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTGATTTGGTTGCTTGGAATATGCTGTTAGATGCATACTCTAAGCTAGGAAAGGTTGAGGAAGCAAAGAGTGTGATCGAGAGGATGAAAGAAAACGGATTCTACCCAAACGTAGCCACTTATGGCAGTCTTGCAAATGGAATAGCTTTGGCTAGGAAGCCGGGAGAAGCACTCTTGCTTTGGAATGAGATAAAACAGAGGTGTGGAATGGGAAATGGAGAGGAGTCTACTCCGTCTTCAGGCCTCCTCCCGCCATTGGAACCTGATGAAGGACTGTTGGATACATTAGCAGACATATGTGTCCGAGCAGCTTTCTTTAGGAAAGCGTTGGAGATCGTTGCTTGCATGGAGCAACACGGGATACCACCAAATAAGACCAAGTTTACTAGGATCTACGTCGAGATGCATTCAAGGATGTTTACTAGTAAGCACGCGTCAAGAGCTAGACAGGACAGGAGAAAGGAACGAAAACGAGCAGCTGAAGCATTCAAGTTCTGGTTGGGATTGCCCAACTCCTATTATGGAAGTGAATGGCGCCTTGATTCAGTAATTGACGATGAATACAAATCTGAGTAATTGAAGATGAAAACACAGATATTATACTTGAATATATATGTAGATTTGAAAGTTTGCTGTGTTATACACAGTTGAAATATAATCTGATACAGCTTTCTACTGGATTCTGTAAGTGTCTCTTCTATCCATGATGGTCAATAGCAATTATATTTAGT</gDNA_template>
            <first_frame> R  L  I  W  L  L  G  I  C  C  *  M  H  T  L  S  *  E  R  L  R  K  Q  R  V  *  S  R  G  *  K  K  T  D  S  T  Q  T  *  P  L  M  A  V  L  Q  M  E  *  L  W  L  G  S  R  E  K  H  S  C  F  G  M  R  *  N  R  G  V  E  W  E  M  E  R  S  L  L  R  L  Q  A  S  S  R  H  W  N  L  M  K  D  C  W  I  H  *  Q  T  Y  V  S  E  Q  L  S  L  G  K  R  W  R  S  L  L  A  W  S  N  T  G  Y  H  Q  I  R  P  S  L  L  G  S  T  S  R  C  I  Q  G  C  L  L  V  S  T  R  Q  E  L  D  R  T  G  E  R  N  E  N  E  Q  L  K  H  S  S  S  G  W  D  C  P  T  P  I  M  E  V  N  G  A  L  I  Q  *  L  T  M  N  T  N  L  S  N  *  R  *  K  H  R  Y  Y  T  *  I  Y  M  *  I  *  K  F  A  V  L  Y  T  V  E  I  *  S  D  T  A  F  Y  W  I  L  *  V  S  L  L  S  M  M  V  N  S  N  Y  I  *  </first_frame>
            <second_frame>  G  *  F  G  C  L  E  Y  A  V  R  C  I  L  *  A  R  K  G  *  G  S  K  E  C  D  R  E  D  E  R  K  R  I  L  P  K  R  S  H  L  W  Q  S  C  K  W  N  S  F  G  *  E  A  G  R  S  T  L  A  L  E  *  D  K  T  E  V  W  N  G  K  W  R  G  V  Y  S  V  F  R  P  P  P  A  I  G  T  *  *  R  T  V  G  Y  I  S  R  H  M  C  P  S  S  F  L  *  E  S  V  G  D  R  C  L  H  G  A  T  R  D  T  T  K  *  D  Q  V  Y  *  D  L  R  R  D  A  F  K  D  V  Y  *  *  A  R  V  K  S  *  T  G  Q  E  K  G  T  K  T  S  S  *  S  I  Q  V  L  V  G  I  A  Q  L  L  L  W  K  *  M  A  P  *  F  S  N  *  R  *  I  Q  I  *  V  I  E  D  E  N  T  D  I  I  L  E  Y  I  C  R  F  E  S  L  L  C  Y  T  Q  L  K  Y  N  L  I  Q  L  S  T  G  F  C  K  C  L  F  Y  P  *  W  S  I  A  I  I  F  S </second_frame>
            <third_frame>   V  D  L  V  A  W  N  M  L  L  D  A  Y  S  K  L  G  K  V  E  E  A  K  S  V  I  E  R  M  K  E  N  G  F  Y  P  N  V  A  T  Y  G  S  L  A  N  G  I  A  L  A  R  K  P  G  E  A  L  L  L  W  N  E  I  K  Q  R  C  G  M  G  N  G  E  E  S  T  P  S  S  G  L  L  P  P  L  E  P  D  E  G  L  L  D  T  L  A  D  I  C  V  R  A  A  F  F  R  K  A  L  E  I  V  A  C  M  E  Q  H  G  I  P  P  N  K  T  K  F  T  R  I  Y  V  E  M  H  S  R  M  F  T  S  K  H  A  S  R  A  R  Q  D  R  R  K  E  R  K  R  A  A  E  A  F  K  F  W  L  G  L  P  N  S  Y  Y  G  S  E  W  R  L  D  S  V  I  D  D  E  Y  K  S  E  *  L  K  M  K  T  Q  I  L  Y  L  N  I  Y  V  D  L  K  V  C  C  V  I  H  S  *  N  I  I  *  Y  S  F  L  L  D  S  V  S  V  S  S  I  H  D  G  Q  *  Q  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56050" stop="55475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDLVAWNMLLDAYSKLGKVEEAKSVIERMKENGFYPNVATYGSLANGIALARKPGEALLLWNEIKQRCGMGNGEESTPSSGLLPPLEPDEGLLDTLADICVRAAFFRKALEIVACMEQHGIPPNKTKFTRIYVEMHSRMFTSKHASRARQDRRKERKRAAEAFKFWLGLPNSYYGSEWRLDSVIDDEYKSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="56365" PGL_stop="57758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56365" e_stop="56548"/>
            <exon e_start="56842" e_stop="57758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="56365" e_stop="56548" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56549" i_stop="56841" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="56842" e_stop="57758" e_length="917"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="56548"/>
              <exon start="56842" stop="57758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328632" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCAGGGACACCAATCCTGACCATCTCGGCCAGCACCTCTCGTGCCCTATCCATTAAACCTTGCTTCACAAACGCAGAAATAACTGTCGTGTAAGTGACATGGTCTGGATGGCTCTCACTATCTCCTAGATGTCTCATTGCCTCTAACATCCTCACCATATCTGTAACACGACCAGCATTCAT : GTATCCTTTCCAATACGAAAACAAGCAAATCCTTCCTATCACCTCTTGCACAAAGCTTAATCATCACATTATAAGTCAAAACATCAGGCTCACAATCAAACTCACTCATTTCACTAAACAACTCCAAGAACCTATTTTTATCACCAAGATTAGCACAAGCATTCAACACAGCATTATACGCGGCTGTATCAGGCCGCGAATGCTTAACCAAATCAAGATTAGACAACCTACGAATCCTTTTAGTAACAGCACAAAAAAGACCCAAACTTTCAATTGGACCATCATCACCAGAGGACGCAAGACGACTAACAACAGAACTCCAAGCTTTAACATGAGGTAAATAACCAGATTTCAACATTGACTTAATAATAGAAGCAGCATAAAGAACATGTCCACCTTTAGCTGCAGCACTAGCAAGAAGTCCAAGTGAATTCGCGTCGAGGCGGTGAAGCTGCCGTTCATGGCGGAGGCGTTGGATGATTGACTGAGCACGACGGAGGCTGATAGTGGAGTTTTGGTAAGATAATTGAGAAACTAAACGACTAAGACAAGTGGGGTTTGGGAGTTGTTGATCAAGATTCTTGGTGTAGTGCAACCAAGCTTCATCAGTCTTTCTCTGCTGCAAAAGGGTCAAAAGGGTATTGTCAGGGGAAGCTGAAAATGGGTTCTTGGAAGTGATTAAGGAAGTGGGGTTGGAGGAATTGGAAGTGGGGTGAGGTTGAAATGAGCTATTGGTAGCTTTACAAGTGAGGGTTGAAGAAGAAGAGGAGTTAAAGATGAGATTTTGGGTGAAGGGGAATGGTGAAGTTGAGGAAGGGGGTGAAGGGGGGGTGGGGGGTAGTAGAGTTGTCATGAATTCTTGAACATTTGGGGAAGAAGAGAAAGGGGAGGGAGAAGTAGTTTCAAATTGAGGAAAT</gDNA_template>
            <first_frame> *  Q  G  H  Q  S  *  P  S  R  P  A  P  L  V  P  Y  P  L  N  L  A  S  Q  T  Q  K  *  L  S  C  K  *  H  G  L  D  G  S  H  Y  L  L  D  V  S  L  P  L  T  S  S  P  Y  L  *  H  D  Q  H  S   : C  I  L  S  N  T  K  T  S  K  S  F  L  S  P  L  A  Q  S  L  I  I  T  L  *  V  K  T  S  G  S  Q  S  N  S  L  I  S  L  N  N  S  K  N  L  F  L  S  P  R  L  A  Q  A  F  N  T  A  L  Y  A  A  V  S  G  R  E  C  L  T  K  S  R  L  D  N  L  R  I  L  L  V  T  A  Q  K  R  P  K  L  S  I  G  P  S  S  P  E  D  A  R  R  L  T  T  E  L  Q  A  L  T  *  G  K  *  P  D  F  N  I  D  L  I  I  E  A  A  *  R  T  C  P  P  L  A  A  A  L  A  R  S  P  S  E  F  A  S  R  R  *  S  C  R  S  W  R  R  R  W  M  I  D  *  A  R  R  R  L  I  V  E  F  W  *  D  N  *  E  T  K  R  L  R  Q  V  G  F  G  S  C  *  S  R  F  L  V  *  C  N  Q  A  S  S  V  F  L  C  C  K  R  V  K  R  V  L  S  G  E  A  E  N  G  F  L  E  V  I  K  E  V  G  L  E  E  L  E  V  G  *  G  *  N  E  L  L  V  A  L  Q  V  R  V  E  E  E  E  E  L  K  M  R  F  W  V  K  G  N  G  E  V  E  E  G  G  E  G  G  V  G  G  S  R  V  V  M  N  S  *  T  F  G  E  E  E  K  G  E  G  E  V  V  S  N  *  G  N </first_frame>
            <second_frame>  S  R  D  T  N  P  D  H  L  G  Q  H  L  S  C  P  I  H  *  T  L  L  H  K  R  R  N  N  C  R  V  S  D  M  V  W  M  A  L  T  I  S  *  M  S  H  C  L  *  H  P  H  H  I  C  N  T  T  S  I  H  :  V  S  F  P  I  R  K  Q  A  N  P  S  Y  H  L  L  H  K  A  *  S  S  H  Y  K  S  K  H  Q  A  H  N  Q  T  H  S  F  H  *  T  T  P  R  T  Y  F  Y  H  Q  D  *  H  K  H  S  T  Q  H  Y  T  R  L  Y  Q  A  A  N  A  *  P  N  Q  D  *  T  T  Y  E  S  F  *  *  Q  H  K  K  D  P  N  F  Q  L  D  H  H  H  Q  R  T  Q  D  D  *  Q  Q  N  S  K  L  *  H  E  V  N  N  Q  I  S  T  L  T  *  *  *  K  Q  H  K  E  H  V  H  L  *  L  Q  H  *  Q  E  V  Q  V  N  S  R  R  G  G  E  A  A  V  H  G  G  G  V  G  *  L  T  E  H  D  G  G  *  *  W  S  F  G  K  I  I  E  K  L  N  D  *  D  K  W  G  L  G  V  V  D  Q  D  S  W  C  S  A  T  K  L  H  Q  S  F  S  A  A  K  G  S  K  G  Y  C  Q  G  K  L  K  M  G  S  W  K  *  L  R  K  W  G  W  R  N  W  K  W  G  E  V  E  M  S  Y  W  *  L  Y  K  *  G  L  K  K  K  R  S  *  R  *  D  F  G  *  R  G  M  V  K  L  R  K  G  V  K  G  G  W  G  V  V  E  L  S  *  I  L  E  H  L  G  K  K  R  K  G  R  E  K  *  F  Q  I  E  E   </second_frame>
            <third_frame>   A  G  T  P  I  L  T  I  S  A  S  T  S  R  A  L  S  I  K  P  C  F  T  N  A  E  I  T  V  V  *  V  T  W  S  G  W  L  S  L  S  P  R  C  L  I  A  S  N  I  L  T  I  S  V  T  R  P  A  F  M :   Y  P  F  Q  Y  E  N  K  Q  I  L  P  I  T  S  C  T  K  L  N  H  H  I  I  S  Q  N  I  R  L  T  I  K  L  T  H  F  T  K  Q  L  Q  E  P  I  F  I  T  K  I  S  T  S  I  Q  H  S  I  I  R  G  C  I  R  P  R  M  L  N  Q  I  K  I  R  Q  P  T  N  P  F  S  N  S  T  K  K  T  Q  T  F  N  W  T  I  I  T  R  G  R  K  T  T  N  N  R  T  P  S  F  N  M  R  *  I  T  R  F  Q  H  *  L  N  N  R  S  S  I  K  N  M  S  T  F  S  C  S  T  S  K  K  S  K  *  I  R  V  E  A  V  K  L  P  F  M  A  E  A  L  D  D  *  L  S  T  T  E  A  D  S  G  V  L  V  R  *  L  R  N  *  T  T  K  T  S  G  V  W  E  L  L  I  K  I  L  G  V  V  Q  P  S  F  I  S  L  S  L  L  Q  K  G  Q  K  G  I  V  R  G  S  *  K  W  V  L  G  S  D  *  G  S  G  V  G  G  I  G  S  G  V  R  L  K  *  A  I  G  S  F  T  S  E  G  *  R  R  R  G  V  K  D  E  I  L  G  E  G  E  W  *  S  *  G  R  G  *  R  G  G  G  G  *  *  S  C  H  E  F  L  N  I  W  G  R  R  E  R  G  G  R  S  S  F  K  L  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56460" stop="56548"/>
                    <exon start="56842" stop="57181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTWSGWLSLSPRCLIASNILTISVTRPAFMYPFQYENKQILPITSCTKLNHHIISQNIRLTIKLTHFTKQLQEPIFITKISTSIQHSIIRGCIRPRMLNQIKIRQPTNPFSNSTKKTQTFNWTIITRGRKTTNNRTPSFNMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="89866" PGL_stop="85910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89866" e_stop="89701"/>
            <exon e_start="89269" e_stop="89030"/>
            <exon e_start="88339" e_stop="88210"/>
            <exon e_start="88086" e_stop="88081"/>
            <exon e_start="87998" e_stop="87921"/>
            <exon e_start="87796" e_stop="87746"/>
            <exon e_start="86163" e_stop="85910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89866" e_stop="89701" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89700" i_stop="89270" i_length="431"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89269" e_stop="89030" e_length="240"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="89029" i_stop="88340" i_length="690"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88339" e_stop="88210" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.737">
            <gDNA_intron_boundary i_start="88209" i_stop="88087" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88086" e_stop="88081" e_length="6"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="88080" i_stop="87999" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87998" e_stop="87921" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="87920" i_stop="87797" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87796" e_stop="87746" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87745" i_stop="86164" i_length="1582"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86163" e_stop="85910" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89866" stop="89701"/>
              <exon start="89269" stop="89030"/>
              <exon start="88339" stop="88210"/>
              <exon start="88086" stop="88081"/>
              <exon start="87998" stop="87921"/>
              <exon start="87796" stop="87746"/>
              <exon start="86163" stop="85910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAAAAGAGATTCTTTTTATATATAGTTATAAAAAAATTTCAGAGTTTTCTTTGTAAAACGAACGGTGTTGATAGGGCAAAATCCAAAACTCTGCCTCATCTCAGTCGTCTCCCTTTCTCCCTTCTTCTCCAACGTCCGATCTTCCAGTTCCCTCCATCCCCAG : TATGGCGGATGGTCAAGGTTCGTCTAGGTCACCGGCGAGTCCAAACGGAGGTGGTAGTCATGAGAGTGGTGGGGACCAGAGTCCGAGGTCTAATGTACGTGAACAGGACAGGTTTTTACCAATAGCTAATATTAGTAGAATCATGAAGAAGGCACTTCCTGCTAATGGAAAAATTGCGAAGGATGCTAAGGAGACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATTACTAGCGA : GGCAAGTGACAAGTGCCAGAGAGAGAAAAGGAAGACTATTAATGGTGACGATTTGCTATGGGCAATGGCAACTCTTGGGTTTGAAGATTATATTGAACCACTCAAGGTGTATCTTGCTCGATACAGAGAG : ATGGAG : GGTGATACAAAGGGAACGTCAAAGGCTGCTGATGGCTCTACTAAAAGAGATGGGATGCAACCTGGTCCTAATTCACAG : CTTGCACATCAGGGTTCATACTCACAAGGAATGAATTATGGGAATTCTCAG : GGTCAGCATATGATGGTCCCGATGCAAGGAACTGAGTAAAAATCCGATCTTCGTCCTGTTTGAGAAGACGGGTGGAGTTGAAAACATATTATATATATAGATGGTTCTTCTGCTGTAACCTCTGTAACATGGTTTATTAATTCTAGTGCTCTCTAGTGAGTGCCATGTCATATTTAAAGTTTGTAAATTGAGGAGATGTTTTAAGAAATATTATAGACATGATTGTTTGTAGTAATAATGAAAACCATTACCTA</gDNA_template>
            <first_frame> R  E  K  R  F  F  L  Y  I  V  I  K  K  F  Q  S  F  L  C  K  T  N  G  V  D  R  A  K  S  K  T  L  P  H  L  S  R  L  P  F  S  L  L  L  Q  R  P  I  F  Q  F  P  P  S  P   : V  W  R  M  V  K  V  R  L  G  H  R  R  V  Q  T  E  V  V  V  M  R  V  V  G  T  R  V  R  G  L  M  Y  V  N  R  T  G  F  Y  Q  *  L  I  L  V  E  S  *  R  R  H  F  L  L  M  E  K  L  R  R  M  L  R  R  L  F  R  N  V  F  L  S  S  S  A  S  L  L  A   : R  Q  V  T  S  A  R  E  R  K  G  R  L  L  M  V  T  I  C  Y  G  Q  W  Q  L  L  G  L  K  I  I  L  N  H  S  R  C  I  L  L  D  T  E  R :   W  R :   V  I  Q  R  E  R  Q  R  L  L  M  A  L  L  K  E  M  G  C  N  L  V  L  I  H  S :   L  H  I  R  V  H  T  H  K  E  *  I  M  G  I  L  R :   V  S  I  *  W  S  R  C  K  E  L  S  K  N  P  I  F  V  L  F  E  K  T  G  G  V  E  N  I  L  Y  I  *  M  V  L  L  L  *  P  L  *  H  G  L  L  I  L  V  L  S  S  E  C  H  V  I  F  K  V  C  K  L  R  R  C  F  K  K  Y  Y  R  H  D  C  L  *  *  *  *  K  P  L  P  </first_frame>
            <second_frame>  E  K  R  D  S  F  Y  I  *  L  *  K  N  F  R  V  F  F  V  K  R  T  V  L  I  G  Q  N  P  K  L  C  L  I  S  V  V  S  L  S  P  F  F  S  N  V  R  S  S  S  S  L  H  P  Q  :  Y  G  G  W  S  R  F  V  *  V  T  G  E  S  K  R  R  W  *  S  *  E  W  W  G  P  E  S  E  V  *  C  T  *  T  G  Q  V  F  T  N  S  *  Y  *  *  N  H  E  E  G  T  S  C  *  W  K  N  C  E  G  C  *  G  D  C  S  G  M  C  F  *  V  H  Q  L  H  Y  *  R  :  G  K  *  Q  V  P  E  R  E  K  E  D  Y  *  W  *  R  F  A  M  G  N  G  N  S  W  V  *  R  L  Y  *  T  T  Q  G  V  S  C  S  I  Q  R   : D  G   : G  *  Y  K  G  N  V  K  G  C  *  W  L  Y  *  K  R  W  D  A  T  W  S  *  F  T   : A  C  T  S  G  F  I  L  T  R  N  E  L  W  E  F  S   : G  S  A  Y  D  G  P  D  A  R  N  *  V  K  I  R  S  S  S  C  L  R  R  R  V  E  L  K  T  Y  Y  I  Y  R  W  F  F  C  C  N  L  C  N  M  V  Y  *  F  *  C  S  L  V  S  A  M  S  Y  L  K  F  V  N  *  G  D  V  L  R  N  I  I  D  M  I  V  C  S  N  N  E  N  H  Y  L </second_frame>
            <third_frame>   R  K  E  I  L  F  I  Y  S  Y  K  K  I  S  E  F  S  L  *  N  E  R  C  *  *  G  K  I  Q  N  S  A  S  S  Q  S  S  P  F  L  P  S  S  P  T  S  D  L  P  V  P  S  I  P  S :   M  A  D  G  Q  G  S  S  R  S  P  A  S  P  N  G  G  G  S  H  E  S  G  G  D  Q  S  P  R  S  N  V  R  E  Q  D  R  F  L  P  I  A  N  I  S  R  I  M  K  K  A  L  P  A  N  G  K  I  A  K  D  A  K  E  T  V  Q  E  C  V  S  E  F  I  S  F  I  T  S  E :   A  S  D  K  C  Q  R  E  K  R  K  T  I  N  G  D  D  L  L  W  A  M  A  T  L  G  F  E  D  Y  I  E  P  L  K  V  Y  L  A  R  Y  R  E  :  M  E  :  G  D  T  K  G  T  S  K  A  A  D  G  S  T  K  R  D  G  M  Q  P  G  P  N  S  Q  :  L  A  H  Q  G  S  Y  S  Q  G  M  N  Y  G  N  S  Q  :  G  Q  H  M  M  V  P  M  Q  G  T  E  *  K  S  D  L  R  P  V  *  E  D  G  W  S  *  K  H  I  I  Y  I  D  G  S  S  A  V  T  S  V  T  W  F  I  N  S  S  A  L  *  *  V  P  C  H  I  *  S  L  *  I  E  E  M  F  *  E  I  L  *  T  *  L  F  V  V  I  M  K  T  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89789" stop="89701"/>
                    <exon start="89269" stop="89030"/>
                    <exon start="88339" stop="88210"/>
                    <exon start="88086" stop="88081"/>
                    <exon start="87998" stop="87921"/>
                    <exon start="87796" stop="87746"/>
                    <exon start="86163" stop="86125"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKIQNSASSQSSPFLPSSPTSDLPVPSIPSMADGQGSSRSPASPNGGGSHESGGDQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREMEGDTKGTSKAADGSTKRDGMQPGPNSQLAHQGSYSQGMNYGNSQGQHMMVPMQGTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87367" e_stop="86657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="87367" e_stop="86657" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87367" stop="86657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGGATAGTAGGGAAGGTTTGTGTATATATTCATTCAAGTCTTGGGCCTTTATGTGATATCACTACTTCAAAAGATGCCTAGAATTTTGCCGAAATGTTAATGATATTACCATAAATAGAACTTAAAAAAAGGTAAAATGAGGCAAATCCGTAGATGCAGTAAAAGAAGGGTATTATGAATAGCTTTTCGCACTTAGGTATCTGTTTTTTCCTATTAAAACCAGTACAACTAATTTTGGAGCTGAGTCCATTGTTTCTTCCTGCTTTATGGTGATCGTACATATTGCTCAGAGGACTACTTTTTGATGTGATGTCAGACTTTGCTAGACAGTTAGGTATATGAGGGATTGACATGTGTGATGGTCATTCTCCATGTGATGTGAGACTTTCTCAACAATTAGGTATATGAGGGATGGACATGTGTGATTGTCATTAAGTGTCATATTCCTTGTGTAATAAAGTGAGGCAGTACAGGTTTATTGAATAATTCTACCTAAATATATGTCATGAATTGAAGACATTGTGCAAAACATGGGTATCGGTGATTACCAGGTAATTAAGGACTTGAAATCATTGTTCACTGTATGCTTGAGTTTGAAACCAGATTATCGGATATCAACTACATGATGCATACTATAGATAATGATTTTTTGCACTGCGAGTGGAAAGTTGTTTTGTTTTATATGAAGGTGTTTGACTGGGCGCAAAG</gDNA_template>
            <first_frame> *  W  I  V  G  K  V  C  V  Y  I  H  S  S  L  G  P  L  C  D  I  T  T  S  K  D  A  *  N  F  A  E  M  L  M  I  L  P  *  I  E  L  K  K  R  *  N  E  A  N  P  *  M  Q  *  K  K  G  I  M  N  S  F  S  H  L  G  I  C  F  F  L  L  K  P  V  Q  L  I  L  E  L  S  P  L  F  L  P  A  L  W  *  S  Y  I  L  L  R  G  L  L  F  D  V  M  S  D  F  A  R  Q  L  G  I  *  G  I  D  M  C  D  G  H  S  P  C  D  V  R  L  S  Q  Q  L  G  I  *  G  M  D  M  C  D  C  H  *  V  S  Y  S  L  C  N  K  V  R  Q  Y  R  F  I  E  *  F  Y  L  N  I  C  H  E  L  K  T  L  C  K  T  W  V  S  V  I  T  R  *  L  R  T  *  N  H  C  S  L  Y  A  *  V  *  N  Q  I  I  G  Y  Q  L  H  D  A  Y  Y  R  *  *  F  F  A  L  R  V  E  S  C  F  V  L  Y  E  G  V  *  L  G  A  K </first_frame>
            <second_frame>  N  G  *  *  G  R  F  V  Y  I  F  I  Q  V  L  G  L  Y  V  I  S  L  L  Q  K  M  P  R  I  L  P  K  C  *  *  Y  Y  H  K  *  N  L  K  K  G  K  M  R  Q  I  R  R  C  S  K  R  R  V  L  *  I  A  F  R  T  *  V  S  V  F  S  Y  *  N  Q  Y  N  *  F  W  S  *  V  H  C  F  F  L  L  Y  G  D  R  T  Y  C  S  E  D  Y  F  L  M  *  C  Q  T  L  L  D  S  *  V  Y  E  G  L  T  C  V  M  V  I  L  H  V  M  *  D  F  L  N  N  *  V  Y  E  G  W  T  C  V  I  V  I  K  C  H  I  P  C  V  I  K  *  G  S  T  G  L  L  N  N  S  T  *  I  Y  V  M  N  *  R  H  C  A  K  H  G  Y  R  *  L  P  G  N  *  G  L  E  I  I  V  H  C  M  L  E  F  E  T  R  L  S  D  I  N  Y  M  M  H  T  I  D  N  D  F  L  H  C  E  W  K  V  V  L  F  Y  M  K  V  F  D  W  A  Q   </second_frame>
            <third_frame>   M  D  S  R  E  G  L  C  I  Y  S  F  K  S  W  A  F  M  *  Y  H  Y  F  K  R  C  L  E  F  C  R  N  V  N  D  I  T  I  N  R  T  *  K  K  V  K  *  G  K  S  V  D  A  V  K  E  G  Y  Y  E  *  L  F  A  L  R  Y  L  F  F  P  I  K  T  S  T  T  N  F  G  A  E  S  I  V  S  S  C  F  M  V  I  V  H  I  A  Q  R  T  T  F  *  C  D  V  R  L  C  *  T  V  R  Y  M  R  D  *  H  V  *  W  S  F  S  M  *  C  E  T  F  S  T  I  R  Y  M  R  D  G  H  V  *  L  S  L  S  V  I  F  L  V  *  *  S  E  A  V  Q  V  Y  *  I  I  L  P  K  Y  M  S  *  I  E  D  I  V  Q  N  M  G  I  G  D  Y  Q  V  I  K  D  L  K  S  L  F  T  V  C  L  S  L  K  P  D  Y  R  I  S  T  T  *  C  I  L  *  I  M  I  F  C  T  A  S  G  K  L  F  C  F  I  *  R  C  L  T  G  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0036O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="89795" e_stop="89433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="89795" e_stop="89433" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89795" stop="89433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340444" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATAGGGCAAAATCCAAAACTCTGCCTCATCTCAGTCGTCTCCCTTTCTCCCTTCTTCTCCAACGTCCGATCTTCCAGTTCCCTCCATCCCCAGGTTCATTTTTATACCTTTTTTTCAAAAAAAAAAATTGTCACCATTTTCTCTCTCTAACTTCTCTCTCTAACCATTTCAATGGCAGAAATCAGAAATAGGGTTTTTTATATGGTTTATGTCGTTCATCTTACTGTTTTCTAGAAGGTTTTATTTTTTGGTTGAAAAAAGTCACCCCTTTGGCCCTTTACACCCTTTTCTCTGATTAACAATTTCAATGGCAGAAATGGGAATTAGGGTTTTTTTCTCTGGTTCATGTCATTCATCTTAC</gDNA_template>
            <first_frame> *  *  G  K  I  Q  N  S  A  S  S  Q  S  S  P  F  L  P  S  S  P  T  S  D  L  P  V  P  S  I  P  R  F  I  F  I  P  F  F  Q  K  K  K  L  S  P  F  S  L  S  N  F  S  L  *  P  F  Q  W  Q  K  S  E  I  G  F  F  I  W  F  M  S  F  I  L  L  F  S  R  R  F  Y  F  L  V  E  K  S  H  P  F  G  P  L  H  P  F  L  *  L  T  I  S  M  A  E  M  G  I  R  V  F  F  S  G  S  C  H  S  S  Y </first_frame>
            <second_frame>  D  R  A  K  S  K  T  L  P  H  L  S  R  L  P  F  S  L  L  L  Q  R  P  I  F  Q  F  P  P  S  P  G  S  F  L  Y  L  F  F  K  K  K  N  C  H  H  F  L  S  L  T  S  L  S  N  H  F  N  G  R  N  Q  K  *  G  F  L  Y  G  L  C  R  S  S  Y  C  F  L  E  G  F  I  F  W  L  K  K  V  T  P  L  A  L  Y  T  L  F  S  D  *  Q  F  Q  W  Q  K  W  E  L  G  F  F  S  L  V  H  V  I  H  L   </second_frame>
            <third_frame>   I  G  Q  N  P  K  L  C  L  I  S  V  V  S  L  S  P  F  F  S  N  V  R  S  S  S  S  L  H  P  Q  V  H  F  Y  T  F  F  S  K  K  K  I  V  T  I  F  S  L  *  L  L  S  L  T  I  S  M  A  E  I  R  N  R  V  F  Y  M  V  Y  V  V  H  L  T  V  F  *  K  V  L  F  F  G  *  K  K  S  P  L  W  P  F  T  P  F  S  L  I  N  N  F  N  G  R  N  G  N  *  G  F  F  L  W  F  M  S  F  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0036O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="96858" PGL_stop="94453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96858" e_stop="96779"/>
            <exon e_start="96702" e_stop="96516"/>
            <exon e_start="95252" e_stop="95117"/>
            <exon e_start="94782" e_stop="94453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96858" e_stop="96779" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96778" i_stop="96703" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96702" e_stop="96516" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.973">
            <gDNA_intron_boundary i_start="96515" i_stop="95253" i_length="1263"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95252" e_stop="95117" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.765" acc_prob="0.974">
            <gDNA_intron_boundary i_start="95116" i_stop="94783" i_length="334"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94782" e_stop="94453" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96858" stop="96779"/>
              <exon start="96702" stop="96516"/>
              <exon start="95252" stop="95117"/>
              <exon start="94782" stop="94453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTTGGCAGGTCCTCAATCACCTGATAGACGTATTAACTGGATCAGGCGCCTTGAGATTGCTGAAGATTCTGCAAAAG : GAATCGAATATCTTCACACGGGATGTGTTCCATCCATCATCCACAGAGATGTGAAAACTAGCAATATTCTGCTGGACAAGAATACGAGAGCAAAGGTTTCAGATTTTGGTCTCTCCAAACTTGCAGTAGATGGAGCTTCTCATGTGTCAAGCATAGTCCGTGGAACTGTAGGATATCTGGATCCCGA : ATATTACATTTCCCAGCAGTTGACGGACAAAAGTGACGTTTACAGTTTTGGTGTCATTCTCTTGGAGTTAATATCTGGACAAGAAGCAATATCTAACGAAAATTTTGGTCACAATTGCCGTAATATAGTCCAGTGG : GCGAAACTACACATTGAAAGTGGGGACGTTCAGGGCATTATTGACCCCGCTTTACACAATGACTATGACATCCAATCAATTTGGAAGATAGCTGAGAAAGCTTTGATGTGTGTCCAACCTCATGGAAACATGAGACCATCAATATCAGAAGTTATCAAAGAAATCCAGGATGCAATTGCAATCGAAAGAGGCGCAGAAGCAGTAAAGGAAGGTAGTTCAGATGACATATCCAGGCATTCAATGCATTCCTCCCTACACGGGGGTTCAATGGACCTTGGTGCAAGTGACCATTACTTGTCCATTGATGAATCTATCACAAGACCAGCAGCT</gDNA_template>
            <first_frame> N  V  G  R  S  S  I  T  *  *  T  Y  *  L  D  Q  A  P  *  D  C  *  R  F  C  K  R :   N  R  I  S  S  H  G  M  C  S  I  H  H  P  Q  R  C  E  N  *  Q  Y  S  A  G  Q  E  Y  E  S  K  G  F  R  F  W  S  L  Q  T  C  S  R  W  S  F  S  C  V  K  H  S  P  W  N  C  R  I  S  G  S  R  :  I  L  H  F  P  A  V  D  G  Q  K  *  R  L  Q  F  W  C  H  S  L  G  V  N  I  W  T  R  S  N  I  *  R  K  F  W  S  Q  L  P  *  Y  S  P  V   : G  E  T  T  H  *  K  W  G  R  S  G  H  Y  *  P  R  F  T  Q  *  L  *  H  P  I  N  L  E  D  S  *  E  S  F  D  V  C  P  T  S  W  K  H  E  T  I  N  I  R  S  Y  Q  R  N  P  G  C  N  C  N  R  K  R  R  R  S  S  K  G  R  *  F  R  *  H  I  Q  A  F  N  A  F  L  P  T  R  G  F  N  G  P  W  C  K  *  P  L  L  V  H  *  *  I  Y  H  K  T  S  S  </first_frame>
            <second_frame>  M  L  A  G  P  Q  S  P  D  R  R  I  N  W  I  R  R  L  E  I  A  E  D  S  A  K   : G  I  E  Y  L  H  T  G  C  V  P  S  I  I  H  R  D  V  K  T  S  N  I  L  L  D  K  N  T  R  A  K  V  S  D  F  G  L  S  K  L  A  V  D  G  A  S  H  V  S  S  I  V  R  G  T  V  G  Y  L  D  P  E :   Y  Y  I  S  Q  Q  L  T  D  K  S  D  V  Y  S  F  G  V  I  L  L  E  L  I  S  G  Q  E  A  I  S  N  E  N  F  G  H  N  C  R  N  I  V  Q  W  :  A  K  L  H  I  E  S  G  D  V  Q  G  I  I  D  P  A  L  H  N  D  Y  D  I  Q  S  I  W  K  I  A  E  K  A  L  M  C  V  Q  P  H  G  N  M  R  P  S  I  S  E  V  I  K  E  I  Q  D  A  I  A  I  E  R  G  A  E  A  V  K  E  G  S  S  D  D  I  S  R  H  S  M  H  S  S  L  H  G  G  S  M  D  L  G  A  S  D  H  Y  L  S  I  D  E  S  I  T  R  P  A  A </second_frame>
            <third_frame>   C  W  Q  V  L  N  H  L  I  D  V  L  T  G  S  G  A  L  R  L  L  K  I  L  Q  K  :  E  S  N  I  F  T  R  D  V  F  H  P  S  S  T  E  M  *  K  L  A  I  F  C  W  T  R  I  R  E  Q  R  F  Q  I  L  V  S  P  N  L  Q  *  M  E  L  L  M  C  Q  A  *  S  V  E  L  *  D  I  W  I  P   : N  I  T  F  P  S  S  *  R  T  K  V  T  F  T  V  L  V  S  F  S  W  S  *  Y  L  D  K  K  Q  Y  L  T  K  I  L  V  T  I  A  V  I  *  S  S  G :   R  N  Y  T  L  K  V  G  T  F  R  A  L  L  T  P  L  Y  T  M  T  M  T  S  N  Q  F  G  R  *  L  R  K  L  *  C  V  S  N  L  M  E  T  *  D  H  Q  Y  Q  K  L  S  K  K  S  R  M  Q  L  Q  S  K  E  A  Q  K  Q  *  R  K  V  V  Q  M  T  Y  P  G  I  Q  C  I  P  P  Y  T  G  V  Q  W  T  L  V  Q  V  T  I  T  C  P  L  M  N  L  S  Q  D  Q  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96857" stop="96779"/>
                    <exon start="96702" stop="96516"/>
                    <exon start="95252" stop="95117"/>
                    <exon start="94782" stop="94453"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLAGPQSPDRRINWIRRLEIAEDSAKGIEYLHTGCVPSIIHRDVKTSNILLDKNTRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNENFGHNCRNIVQWAKLHIESGDVQGIIDPALHNDYDIQSIWKIAEKALMCVQPHGNMRPSISEVIKEIQDAIAIERGAEAVKEGSSDDISRHSMHSSLHGGSMDLGASDHYLSIDESITRPAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="100605" PGL_stop="100023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100605" e_stop="100023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="100605" e_stop="100023" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100605" stop="100023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGACCCATTTGATAGAATATGGGCGTCTGACACCCTAAAAAAAGCCAATTACCTTGTTGATGTGGCTGCTGGTACTGAAAGAGTTTCAACCAAAATGCCAATTGATGTGAATACCTTAAATGGTGAGATGCCTCCTCAGAAAGCAATGCAGACTGCTGTAGTAGGAAGAAATGGCTCGTTAACTTATCGTCTGAATCTCGATGGTTTCCCTGGTTTTGGTTGGGCATTTACTTATTTTGCTGAAATTGAGGATTTGAAACCTGGTGATAGTAGGAAATTCCGGTTGCTTCTCCCTGGAGCTCCTGATATCAGCAAGGTTGCTGTTAATATCCAAGAGAATGCCCATGGGAAATATCGTTTATATGAGCCCGGCTACTTCAACTTGTCCTTGCCCTTTGTATTATCTTTTCGTTTCGGAAAGACATCTGATTCCACCATGGGGCCTCTCTTGAATGCTATGGAAGTAAACAGATATGTAAAGAGAACTGATGGCTCTTTAGACGGTAAAACCATGTCTTTTTCTTTGAACATTATTATAATGTGGTTCGTTGAAATGATTATCTGCAGTTTATTTCATTA</gDNA_template>
            <first_frame> L  M  T  H  L  I  E  Y  G  R  L  T  P  *  K  K  P  I  T  L  L  M  W  L  L  V  L  K  E  F  Q  P  K  C  Q  L  M  *  I  P  *  M  V  R  C  L  L  R  K  Q  C  R  L  L  *  *  E  E  M  A  R  *  L  I  V  *  I  S  M  V  S  L  V  L  V  G  H  L  L  I  L  L  K  L  R  I  *  N  L  V  I  V  G  N  S  G  C  F  S  L  E  L  L  I  S  A  R  L  L  L  I  S  K  R  M  P  M  G  N  I  V  Y  M  S  P  A  T  S  T  C  P  C  P  L  Y  Y  L  F  V  S  E  R  H  L  I  P  P  W  G  L  S  *  M  L  W  K  *  T  D  M  *  R  E  L  M  A  L  *  T  V  K  P  C  L  F  L  *  T  L  L  *  C  G  S  L  K  *  L  S  A  V  Y  F  I  </first_frame>
            <second_frame>  *  *  P  I  *  *  N  M  G  V  *  H  P  K  K  S  Q  L  P  C  *  C  G  C  W  Y  *  K  S  F  N  Q  N  A  N  *  C  E  Y  L  K  W  *  D  A  S  S  E  S  N  A  D  C  C  S  R  K  K  W  L  V  N  L  S  S  E  S  R  W  F  P  W  F  W  L  G  I  Y  L  F  C  *  N  *  G  F  E  T  W  *  *  *  E  I  P  V  A  S  P  W  S  S  *  Y  Q  Q  G  C  C  *  Y  P  R  E  C  P  W  E  I  S  F  I  *  A  R  L  L  Q  L  V  L  A  L  C  I  I  F  S  F  R  K  D  I  *  F  H  H  G  A  S  L  E  C  Y  G  S  K  Q  I  C  K  E  N  *  W  L  F  R  R  *  N  H  V  F  F  F  E  H  Y  Y  N  V  V  R  *  N  D  Y  L  Q  F  I  S  L </second_frame>
            <third_frame>   D  D  P  F  D  R  I  W  A  S  D  T  L  K  K  A  N  Y  L  V  D  V  A  A  G  T  E  R  V  S  T  K  M  P  I  D  V  N  T  L  N  G  E  M  P  P  Q  K  A  M  Q  T  A  V  V  G  R  N  G  S  L  T  Y  R  L  N  L  D  G  F  P  G  F  G  W  A  F  T  Y  F  A  E  I  E  D  L  K  P  G  D  S  R  K  F  R  L  L  L  P  G  A  P  D  I  S  K  V  A  V  N  I  Q  E  N  A  H  G  K  Y  R  L  Y  E  P  G  Y  F  N  L  S  L  P  F  V  L  S  F  R  F  G  K  T  S  D  S  T  M  G  P  L  L  N  A  M  E  V  N  R  Y  V  K  R  T  D  G  S  L  D  G  K  T  M  S  F  S  L  N  I  I  I  M  W  F  V  E  M  I  I  C  S  L  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100603" stop="100025"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDPFDRIWASDTLKKANYLVDVAAGTERVSTKMPIDVNTLNGEMPPQKAMQTAVVGRNGSLTYRLNLDGFPGFGWAFTYFAEIEDLKPGDSRKFRLLLPGAPDISKVAVNIQENAHGKYRLYEPGYFNLSLPFVLSFRFGKTSDSTMGPLLNAMEVNRYVKRTDGSLDGKTMSFSLNIIIMWFVEMIICSLFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="110663" PGL_stop="106810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110663" e_stop="110493"/>
            <exon e_start="109149" e_stop="108975"/>
            <exon e_start="108887" e_stop="108822"/>
            <exon e_start="108137" e_stop="108089"/>
            <exon e_start="108000" e_stop="107918"/>
            <exon e_start="107800" e_stop="107721"/>
            <exon e_start="107596" e_stop="107494"/>
            <exon e_start="107315" e_stop="107257"/>
            <exon e_start="107058" e_stop="106810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.965"/>
          <exon-intron don_prob="0.985" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="110663" e_stop="110493" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="110492" i_stop="109150" i_length="1343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109149" e_stop="108975" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.889">
            <gDNA_intron_boundary i_start="108974" i_stop="108888" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108887" e_stop="108822" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108821" i_stop="108138" i_length="684"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108137" e_stop="108089" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.954">
            <gDNA_intron_boundary i_start="108088" i_stop="108001" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108000" e_stop="107918" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107917" i_stop="107801" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107800" e_stop="107721" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="107720" i_stop="107597" i_length="124"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107596" e_stop="107494" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="107493" i_stop="107316" i_length="178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107315" e_stop="107257" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="107256" i_stop="107059" i_length="198"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="107058" e_stop="106810" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110663" stop="110493"/>
              <exon start="109149" stop="108975"/>
              <exon start="108887" stop="108822"/>
              <exon start="108137" stop="108089"/>
              <exon start="108000" stop="107918"/>
              <exon start="107800" stop="107721"/>
              <exon start="107596" stop="107494"/>
              <exon start="107315" stop="107257"/>
              <exon start="107058" stop="106810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTGAATTTTTTTTGTAGATTTGGAAATCGACGTTTGATCGGAGAAGAAATGGTGAAGTGTTATCCGACGGTGAGCGAAGAGTATCAAAAAGCAGTTGAAAAATGTAAGAGGAAGCTCAGAGGACTTATCGCCGAGAAGAATTGTGCTCCGATTATGCTGAGATTAGC : ATGGCATTCAGCAGGGACATATGATGTCAAAACCAAAACTGGTGGTCCATTTGGAACAATCAGGCACCCGAATGAACTTAAACATGGAGCTAACAATGGTCTTGATATTGCTGTTCGACTTTTGGAGCCGATCAAGGAACAGTTCCCAATCCTATCCTACGCTGACTTTTATCAG : TTGGCTGGAGTAGTTGCTGTTGAAGTTACGGGAGGCCCCGATATTCCTTTTCATCCTGGGAGACAG : GACAAGACAGAACCACCTCCAGAAGGCCGCTTGCCTGACGCCACCAAAG : GCTCAGATCATCTGAGGGAGGTTTTTGGACACATGGGATTGAGTGATAAAGACATTGTTGCTTTATCTGGTGGTCACACTCTG : GGAAGGTGCCACAAAGAACGCTCAGGATTTGAGGGAGCATGGACCAACAACCCTCTCATATTTGACAATTCCTATTTCAA : GGAGCTTTTGAGTGGAGAGAAAGAAGGTCTCCTCCAGCTACCATCAGACAAAGCACTCTTAGAAGATCCAGTCTTCCGCCCTCTAGTCGAGAAATATGCTGCA : GATGAAGATGCATTCTTTGCTGATTATGCTGAAGCTCATTTGAAGCTCTCGGAGCTCGG : ATTTGCAGATGCTGAGTAAGGTGTGGTGAGAAAGTTGTTTCAATAATCTCTGGAGATCAGTCTGGTTCTTCCAATTTTTCATTTGTACTATTTGTGTATTTAAAACTTTAAAAGTCTAAAAACCAGCTTTACATATATTATATGATTGAAGAATATTGTATGGCTATTACATAAGTCTTGTAATAATGCAACTTTTGTGTCTTTATGTTTGTTGCTAGTATATACAATATATTAAGTAATGGTAAAATA</gDNA_template>
            <first_frame> I  F  E  F  F  L  *  I  W  K  S  T  F  D  R  R  R  N  G  E  V  L  S  D  G  E  R  R  V  S  K  S  S  *  K  M  *  E  E  A  Q  R  T  Y  R  R  E  E  L  C  S  D  Y  A  E  I  S  :  M  A  F  S  R  D  I  *  C  Q  N  Q  N  W  W  S  I  W  N  N  Q  A  P  E  *  T  *  T  W  S  *  Q  W  S  *  Y  C  C  S  T  F  G  A  D  Q  G  T  V  P  N  P  I  L  R  *  L  L  S   : V  G  W  S  S  C  C  *  S  Y  G  R  P  R  Y  S  F  S  S  W  E  T   : G  Q  D  R  T  T  S  R  R  P  L  A  *  R  H  Q  R :   L  R  S  S  E  G  G  F  W  T  H  G  I  E  *  *  R  H  C  C  F  I  W  W  S  H  S   : G  K  V  P  Q  R  T  L  R  I  *  G  S  M  D  Q  Q  P  S  H  I  *  Q  F  L  F  Q  :  G  A  F  E  W  R  E  R  R  S  P  P  A  T  I  R  Q  S  T  L  R  R  S  S  L  P  P  S  S  R  E  I  C  C   : R  *  R  C  I  L  C  *  L  C  *  S  S  F  E  A  L  G  A  R  :  I  C  R  C  *  V  R  C  G  E  K  V  V  S  I  I  S  G  D  Q  S  G  S  S  N  F  S  F  V  L  F  V  Y  L  K  L  *  K  S  K  N  Q  L  Y  I  Y  Y  M  I  E  E  Y  C  M  A  I  T  *  V  L  *  *  C  N  F  C  V  F  M  F  V  A  S  I  Y  N  I  L  S  N  G  K  I </first_frame>
            <second_frame>  F  L  N  F  F  C  R  F  G  N  R  R  L  I  G  E  E  M  V  K  C  Y  P  T  V  S  E  E  Y  Q  K  A  V  E  K  C  K  R  K  L  R  G  L  I  A  E  K  N  C  A  P  I  M  L  R  L  A :   W  H  S  A  G  T  Y  D  V  K  T  K  T  G  G  P  F  G  T  I  R  H  P  N  E  L  K  H  G  A  N  N  G  L  D  I  A  V  R  L  L  E  P  I  K  E  Q  F  P  I  L  S  Y  A  D  F  Y  Q  :  L  A  G  V  V  A  V  E  V  T  G  G  P  D  I  P  F  H  P  G  R  Q  :  D  K  T  E  P  P  P  E  G  R  L  P  D  A  T  K   : G  S  D  H  L  R  E  V  F  G  H  M  G  L  S  D  K  D  I  V  A  L  S  G  G  H  T  L  :  G  R  C  H  K  E  R  S  G  F  E  G  A  W  T  N  N  P  L  I  F  D  N  S  Y  F  K :   E  L  L  S  G  E  K  E  G  L  L  Q  L  P  S  D  K  A  L  L  E  D  P  V  F  R  P  L  V  E  K  Y  A  A  :  D  E  D  A  F  F  A  D  Y  A  E  A  H  L  K  L  S  E  L  G :   F  A  D  A  E  *  G  V  V  R  K  L  F  Q  *  S  L  E  I  S  L  V  L  P  I  F  H  L  Y  Y  L  C  I  *  N  F  K  S  L  K  T  S  F  T  Y  I  I  *  L  K  N  I  V  W  L  L  H  K  S  C  N  N  A  T  F  V  S  L  C  L  L  L  V  Y  T  I  Y  *  V  M  V  K   </second_frame>
            <third_frame>   F  *  I  F  F  V  D  L  E  I  D  V  *  S  E  K  K  W  *  S  V  I  R  R  *  A  K  S  I  K  K  Q  L  K  N  V  R  G  S  S  E  D  L  S  P  R  R  I  V  L  R  L  C  *  D  *   : H  G  I  Q  Q  G  H  M  M  S  K  P  K  L  V  V  H  L  E  Q  S  G  T  R  M  N  L  N  M  E  L  T  M  V  L  I  L  L  F  D  F  W  S  R  S  R  N  S  S  Q  S  Y  P  T  L  T  F  I  S :   W  L  E  *  L  L  L  K  L  R  E  A  P  I  F  L  F  I  L  G  D  R :   T  R  Q  N  H  L  Q  K  A  A  C  L  T  P  P  K  :  A  Q  I  I  *  G  R  F  L  D  T  W  D  *  V  I  K  T  L  L  L  Y  L  V  V  T  L  W :   E  G  A  T  K  N  A  Q  D  L  R  E  H  G  P  T  T  L  S  Y  L  T  I  P  I  S   : R  S  F  *  V  E  R  K  K  V  S  S  S  Y  H  Q  T  K  H  S  *  K  I  Q  S  S  A  L  *  S  R  N  M  L  Q :   M  K  M  H  S  L  L  I  M  L  K  L  I  *  S  S  R  S  S   : D  L  Q  M  L  S  K  V  W  *  E  S  C  F  N  N  L  W  R  S  V  W  F  F  Q  F  F  I  C  T  I  C  V  F  K  T  L  K  V  *  K  P  A  L  H  I  L  Y  D  *  R  I  L  Y  G  Y  Y  I  S  L  V  I  M  Q  L  L  C  L  Y  V  C  C  *  Y  I  Q  Y  I  K  *  W  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0036O20.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110662" stop="110493"/>
                    <exon start="109149" stop="108975"/>
                    <exon start="108887" stop="108822"/>
                    <exon start="108137" stop="108089"/>
                    <exon start="108000" stop="107918"/>
                    <exon start="107800" stop="107721"/>
                    <exon start="107596" stop="107494"/>
                    <exon start="107315" stop="107257"/>
                    <exon start="107058" stop="107040"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNFFCRFGNRRLIGEEMVKCYPTVSEEYQKAVEKCKRKLRGLIAEKNCAPIMLRLAWHSAGTYDVKTKTGGPFGTIRHPNELKHGANNGLDIAVRLLEPIKEQFPILSYADFYQLAGVVAVEVTGGPDIPFHPGRQDKTEPPPEGRLPDATKGSDHLREVFGHMGLSDKDIVALSGGHTLGRCHKERSGFEGAWTNNPLIFDNSYFKELLSGEKEGLLQLPSDKALLEDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGFADAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 23 chains have been computed
$ 
$ memory statistics:
$ 141776 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 8861 bytes was the average size of a spliced alignment
$ 21024 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1617 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 29 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:21:58
-->
