<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:14:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717708" ref_strand="+" ref_description="SGN-E717708 [FC02CA08]">
      <seq>gattctctctataaacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggtggtcagagtgaagaggaagccaccgtcaacctcaacgccatgaacaagcttcaaaccagaaagcatggtcgctttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1994" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1695" g_stop="1617" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="307" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="1" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="896" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E717708" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1695" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAGAGGAAGCCACCGTCAACCTCAACGCCATGAA</genome_strand>
        <mrna_strand>GATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAGAGGAAGCCACCGTCAACCTCAACGCCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730270" ref_strand="+" ref_description="SGN-E730270 [LA23CD12]">
      <seq>ctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggtggtcagagtgaaaaggaaagcaccgtcnaactcaacgccatgaacaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1975" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1675" g_stop="1617" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="287" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="1" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="876" r_length="589" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E730270" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1675" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAGAGGAAGCCACCGTCAACCTCAACGCCATGAA</genome_strand>
        <mrna_strand>CTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAAAGGAAAGCACCGTCNAACTCAACGCCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601065" ref_strand="+" ref_description="SGN-E601065 [54091]">
      <seq>cgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgataagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgccagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgtgctgatgttaccgagcgtgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactccaggttctgaatcccccaaggttgcaccagaagtgattgctgagtacaccatccgtgctttgcagcgcacaatgccacctgctgttcccgctgtggtgttcttgtctggtggacagagtgaagaacaggccaccgtcaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1181" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="881" g_stop="747" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="13" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="713" r_length="578" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E601065" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="881" e_stop="747"/>
          <exon e_start="589" e_stop="13"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCG-CAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAGAGGAAGCCACCGTCAACCT</genome_strand>
        <mrna_strand>CGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGATAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGTGCTGATGTTACCGAGCGTGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCAGGTTCTGAATCCCCCAAGGTTGCACCAGAAGTGATTGCTGAGTACACCATCCGTGCTTTGCAGCGCACAATGCCACCTGCTGTTCCCGCTGTGGTGTTCTTGTCTGGTGGACAGAGTGAAGAACAGGCCACCGTCAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710143" ref_strand="+" ref_description="SGN-E710143 [FA54BE11]">
      <seq>cgtattgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccacaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggtggtcacattgaagaggaagccaccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1085" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="787" g_stop="747" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.93"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="18" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="613" r_length="572" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E710143" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="787" e_stop="747"/>
          <exon e_start="589" e_stop="18"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAGAGGAAGCCACCGTC</genome_strand>
        <mrna_strand>CGTATTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCACAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCACATTGAAGAGGAAGCCACCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599275" ref_strand="+" ref_description="SGN-E599275 [52259]">
      <seq>ctttttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgataagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgtgctgatgttaccgagcgtgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaagcgttaccttgttgaagcctaacatggtcactccaggttctgaatcccccaaaggttgcaccagaagtgattgctgagtacaccatccgtgctttgcagcgcacaatgccacctgctgttcccgctgtggtgtcttgtctggtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1667" g_stop="1617" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="40" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="829" r_length="552" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E599275" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1667" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="40"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAG-G-TACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCC-AAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCA</genome_strand>
        <mrna_strand>CTT--TTTTTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGATAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGTGCTGATGTTACCGAGCGTGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGCGTTACCTTGTTGAAGCCTAACATGGTCACTCCAGGTTCTGAATCCCCCAAAGGTTGCACCAGAAGTGATTGCTGAGTACACCATCCGTGCTTTGCAGCGCACAATGCCACCTGCTGTTCCCGCTGTGGTG-TCTTGTCTGGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705344" ref_strand="+" ref_description="SGN-E705344 [FA26DE02]">
      <seq>aacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctccccaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1982" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1682" g_stop="1617" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="294" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="41" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="843" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E705344" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1682" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="41"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTC</genome_strand>
        <mrna_strand>AACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCCAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705700" ref_strand="+" ref_description="SGN-E705700 [FA27DF01]">
      <seq>atctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaatatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1961" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1617" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="273" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="41" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="822" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E705700" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="41"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTC</genome_strand>
        <mrna_strand>ATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAATATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554499" ref_strand="+" ref_description="SGN-E554499 [cTSC-4-H9]">
      <seq>acttctctcactttcttcaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1981" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1681" g_stop="1617" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="292" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="42" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="840" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E554499" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1681" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="42"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGT</genome_strand>
        <mrna_strand>ACTTCTCTCACTTTCTTC-AATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718103" ref_strand="+" ref_description="SGN-E718103 [FC03CH01]">
      <seq>gataaacttctctcaccttcttcaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcaaaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcaaaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1985" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1686" g_stop="1617" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="297" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="43" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="844" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E718103" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1686" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="43"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGG</genome_strand>
        <mrna_strand>GATAAACTTCTCTCACCTTCTTC-AATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAAAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAAAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374642" ref_strand="+" ref_description="SGN-E374642 [TUS-15-J1]">
      <seq>gagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1180" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="880" g_stop="747" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="45" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="679" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E374642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="880" e_stop="747"/>
          <exon e_start="589" e_stop="45"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGT</genome_strand>
        <mrna_strand>GAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718453" ref_strand="+" ref_description="SGN-E718453 [FC04CH06]">
      <seq>tagggcgattggcggccaatcggccgaattgattctctctataaacctctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcaaaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgtttccgctgtggtgttcctgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1996" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1694" g_stop="1617" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="109" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="337" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="47" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="880" r_length="543" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E718453" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1694" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="47"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</genome_strand>
        <mrna_strand>ATTCTCTCTATAAACCTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAAAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTTCCGCTGTGGTGTTCCTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731957" ref_strand="+" ref_description="SGN-E731957 [LA28CG02]">
      <seq>ctttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1971" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1671" g_stop="1617" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="283" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="47" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="826" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E731957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1671" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="47"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</genome_strand>
        <mrna_strand>CTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263904" ref_strand="+" ref_description="SGN-E263904 [cLEG-64-C9]">
      <seq>ggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1245" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="945" g_stop="747" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="47" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="742" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E263904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="945" e_stop="747"/>
          <exon e_start="589" e_stop="47"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</genome_strand>
        <mrna_strand>GGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248323" ref_strand="+" ref_description="SGN-E248323 [cLEG-1-B9]">
      <seq>cagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1104" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="804" g_stop="747" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="47" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="601" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E248323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="804" e_stop="747"/>
          <exon e_start="589" e_stop="47"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</genome_strand>
        <mrna_strand>CAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214668" ref_strand="+" ref_description="SGN-E214668 [cLEC-79-O6]">
      <seq>gagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="797" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="497" g_stop="47" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E214668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="497" e_stop="47"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</genome_strand>
        <mrna_strand>GAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717575" ref_strand="+" ref_description="SGN-E717575 [FC02AE08]">
      <seq>gggcgattggcggccaatcggccgaattgattctctctataaacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcaaaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1996" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1694" g_stop="1617" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="335" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="48" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="877" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E717575" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1694" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="48"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCT</genome_strand>
        <mrna_strand>ATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAAAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723992" ref_strand="+" ref_description="SGN-E723992 [FC22CH06]">
      <seq>gggcgattggcggccaatcggccgaattgattctctctataaacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcaaaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1996" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1694" g_stop="1617" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="335" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="48" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="877" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E723992" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1694" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="48"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCT</genome_strand>
        <mrna_strand>ATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAAAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726192" ref_strand="+" ref_description="SGN-E726192 [LA11AD07]">
      <seq>cttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1980" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1680" g_stop="1617" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="292" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="49" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="833" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E726192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1680" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="49"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTC</genome_strand>
        <mrna_strand>CTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728605" ref_strand="+" ref_description="SGN-E728605 [LA18BD10]">
      <seq>atctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacgcacaatgccacccgctgttcccgctgtggtgttcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1961" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1617" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="273" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="50" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="813" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E728605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="50"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGT</genome_strand>
        <mrna_strand>ATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692142" ref_strand="+" ref_description="SGN-E692142 [LH_Ea07P04]">
      <seq>tctgtgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgcgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgttatcttgttcgaggagacactttaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgaactccccgggaccggtggtgagaccaccactcaaggtcttgatgggcttgcggaacgttgccagaagtactatgaggctggtgctaggttcgccaaatggcgtgccgtgttgaatattggagcctatgagccatctcagctcgccatcaatgagaacgccaatggccttgcaagatacgccgttatttgccagcacaatggtcttgtacccattgttgagcccgagatccttgtggatggagcccatgacattaaaaagtgcgctgatgataccgagcgcgttcttgctgcttgctacgaggttctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatcccccaaggttgcacgataagtgatcgctgagtacacggtgcgtgctctgcaacgcacaatgccacctgctgttcctgctgtggtgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1189" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="892" g_stop="747" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="53" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="683" r_length="537" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E692142" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="892" e_stop="747"/>
          <exon e_start="589" e_stop="53"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCC</genome_strand>
        <mrna_strand>TCTGTGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGCGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTTATCTTGTTCGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGGTGGTGAGACCACCACTCAAGGTCTTGATGGGCTTGCGGAACGTTGCCAGAAGTACTATGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAATATTGGAGCCTATGAGCCATCTCAGCTCGCCATCAATGAGAACGCCAATGGCCTTGCAAGATACGCCGTTATTTGCCAGCACAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTGGATGGAGCCCATGACATTAAAAAGTGCGCTGATGATACCGAGCGCGTTCTTGCTGCTTGCTACGAGGTTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCCCCCAAGGTTGCACGATAAGTGATCGCTGAGTACACGGTGCGTGCTCTGCAACGCACAATGCCACCTGCTGTTCCTGCTGTGGTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691517" ref_strand="+" ref_description="SGN-E691517 [LH_Ea06F03]">
      <seq>ccgttaaggttcttcaaatctaagcttattgaatcatgtctccctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgcgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgttatcttgttcgaggagacactttaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtcttgcagaacgttgccagaagtactatgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgcaagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatcccccaggttgcaccagaagtgatcgctgagtacacagcccgtgctctgcaacgcacaatgccacctgctgttcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1974" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1678" g_stop="1617" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="291" r_length="228" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="64" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="816" r_length="525" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E691517" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1678" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="64"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCACTTTCTTCAAATCTAAGCTTATT-AATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGC</genome_strand>
        <mrna_strand>CCGTTAAGGTTCTTCAAATCTAAGCTTATTGAATCATGTCTCCCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGCGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTTATCTTGTTCGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTTGCAGAACGTTGCCAGAAGTACTATGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCAAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATC-CCCCAGGTTGCACCAGAAGTGATCGCTGAGTACACAGCCCGTGCTCTGCAACGCACAATGCCACCTGCTGTTCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691457" ref_strand="+" ref_description="SGN-E691457 [LH_Ea06C15]">
      <seq>tttctctcactttcttcaaatctaagcttattgaatcacctcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgcgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgttatcttgttcgaggagacactttaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtcttgcagaacgttgccagaagtactatgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgcaagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatcccccaaggttgcaccagaagtgatcgctgagtacacagtccgtgctctgcaacgcacaatgccacctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1979" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1680" g_stop="1617" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="293" r_length="228" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="76" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="807" r_length="514" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E691457" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1680" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="76"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCACTTTCTTCAAATCTAAGCTTATT-AATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACC</genome_strand>
        <mrna_strand>TTTCTCTCACTTTCTTCAAATCTAAGCTTATTGAATCACCTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGCGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTTATCTTGTTCGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTTGCAGAACGTTGCCAGAAGTACTATGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCAAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCCCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACAGTCCGTGCTCTGCAACGCACAATGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261537" ref_strand="+" ref_description="SGN-E261537 [cLEG-57-K2]">
      <seq>aaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtccctcttgaaggtaccttgttgaaagctaacatggtcactcctggttctgaatctcccaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcacgcacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1963" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="1617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="275" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="80" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="783" r_length="508" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E261537" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="80"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGC</genome_strand>
        <mrna_strand>AAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCCTCTTGAAGGTACCTTGTTGAAAGCTAACATGGTCACTCCTGGTTCTGAATCTCCC-AGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGC-ACGCACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599319" ref_strand="+" ref_description="SGN-E599319 [52303]">
      <seq>ctcactttcttcaaatctacttttttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctgcatacattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctttcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccaaaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggactgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgttgccaaaagtactatgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatgggcttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcctgagatccttgttgatggagcccatgacattcagaagtgtgctgatgttaccgaggcgtgttcttgctgcttgctacaaggctctcaatgagcaccatgtcctccttgaaggtaccttgttggaagcctaacatggtcaactcccgggttctgaatcccctaacgttgcaccagaagtgattgctgagtacaccgtccgtgctttgcagcgcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="69" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="297" r_length="228" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="83" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="808" r_length="511" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E599319" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="83"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGA-GCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTT-GAAGCCTAACATGGTC-ACT-CCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAA</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTGCATACATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTTTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAAAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACTGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGTTGCCAAAAGTACTATGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGGCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCTGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGTGCTGATGTTACCGAGGCGTGTTCTTGCTGCTTGCTACAAGGCTCTCAATGAGCACCATGTCCTCCTTGAAGGTACCTTGTTGGAAGCCTAACATGGTCAACTCCCGGGTTCTGAATCCCCTAACGTTGCACCAGAAGTGATTGCTGAGTACACCGTCCGTGCTTTGCAGCGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261671" ref_strand="+" ref_description="SGN-E261671 [cLEG-61-E2]">
      <seq>atcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcaccagaagtgatcgctgagtacaccgtccgtgctttgcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1947" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1647" g_stop="1617" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="259" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="88" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="761" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E261671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1647" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="88"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACG</genome_strand>
        <mrna_strand>ATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591124" ref_strand="+" ref_description="SGN-E591124 [44829]">
      <seq>cttcaaatctactttttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgaacttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgtgctgatgttaccgagcgtgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactccaggttctgaatcccccaaggttgcaccagaagtgattgctgagtacaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="60" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="288" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="103" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="775" r_length="487" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E591124" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGT</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAACTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGTGCTGATGTTACCGAGCGTGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCAGGTTCTGAATCCCCCAAGGTTGCACCAGAAGTGATTGCTGAGTACACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692445" ref_strand="+" ref_description="SGN-E692445 [LH_Ea08L19]">
      <seq>aatgtttctctcactttcttcaaatctaagcttattgaatcatgtcttgctacaagggaaagtatgctgatgagcttattaataatgctacgtacattggtacccctggaaagggtatccttgctgctgatgaatctactggaacaatgggaaagcgtctctcgagcatcaatgtcgaaaatgtagaatcaaacaggagggctctccgcgagcttctcttttgcacccctggatgtcttcactaccttatcggtgttatcttgttcgaggagacactttaccaaaagactgctgctggcaagccttttgttgaagtcatgaaagaagctggagtccttcccgggattaaggttgacaagggtaccgatgaactccccgggaccgagggtgagaccaccactcaaggccttgatggacttgcagaacgatgccaaaactactatgaggctggtgctaggatcgccaaatggcgtgccgtgatgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacacattgttgagcccgacatccttgtcgatggagcccatgacattaaaaagagctctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaagtaccttgttgaagcctaacatggtctctcctggtgctgaatcccccaaggttgcaccagaactgatcgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1979" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1617" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="297" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="111" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="776" r_length="479" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E692445" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATT-AATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAG</genome_strand>
        <mrna_strand>AATGTTTCTCTCACTTTCTTCAAATCTAAGCTTATTGAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAATAATGCTACGTACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACAATGGGAAAGCGTCTCTCGAGCATCAATGTCGAAAATGTAGAATCAAACAGGAGGGCTCTCCGCGAGCTTCTCTTTTGCACCCCTGGATGTCTTCACTACCTTATCGGTGTTATCTTGTTCGAGGAGACACTTTACCAAAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAAGAAGCTGGAGTCCTTCCCGGGATTAAGGTTGACAAGGGTACCGATGAACTCCCCGGGACCGAGGGTGAGACCACCACTCAAGGCCTTGATGGACTTGCAGAACGATGCCAAAACTACTATGAGGCTGGTGCTAGGATCGCCAAATGGCGTGCCGTGATGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACACATTGTTGAGCCCGACATCCTTGTCGATGGAGCCCATGACATTAAAAAGAGCTCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAAGTACCTTGTTGAAGCCTAACATGGTCTCTCCTGGTGCTGAATCCCCCAAGGTTGCACCAGAACTGATCGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579280" ref_strand="+" ref_description="SGN-E579280 [86407]">
      <seq>cttctctcactttcttcaaatctacttttttaaagcttattaatcatgtcttgctacaaaggaaagtatgctgatgaacttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgaacttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgtgctgatgttaccgagcgtgttcttgctgcttgctacaaaggctctcaatgaccaccatgtcctccttgaaggtacctgttgaagccctaacatggtccactccagggttctggaatcccccaagggtttgcaccagaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1980" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="73" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="301" r_length="228" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="121" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="776" r_length="475" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E579280" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTAC-AAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAG-CCTAACATGGT-CACTCC-TGGTTCT-GAATCTCCCAA-GG-TTGCACCAGAAGT</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAAGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAACTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGTGCTGATGTTACCGAGCGTGTTCTTGCTGCTTGCTACAAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACC-TGTTGAAGCCCTAACATGGTCCACTCCAGGGTTCTGGAATCCCCCAAGGGTTTGCACCAGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699968" ref_strand="+" ref_description="SGN-E699968 [FA11CH12]">
      <seq>ctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1959" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1659" g_stop="1617" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="271" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="127" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="734" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E699968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1659" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACC</genome_strand>
        <mrna_strand>CTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692449" ref_strand="+" ref_description="SGN-E692449 [LH_Ea08L23]">
      <seq>actgtttctctcactttcttcaaatctaagcttattgagtcacgtcttgctacaagggaaagtatgctgatgagcttattaataatgctacgtacattggtacccctggaaagggtatccttgctcgctgatgaatctactggaacaatgggaaagcgtctctcgagcatcaatgtcgaaaatgtagaatcaaacacgagggctctcctcgagcttctcttttgcacccctggatgtcttcactaccttatcggtgttatcttgttcgaggagacactttaccaaaagactgctgctggcaagccttttgttgaagtcatgaaagaagctggagtccttcccgggattaaggttgacaagggtaccgatgaactccccgggaccgagggtgagaccaccactcaaggccttgatggacttgcagaacgatgccaaaactactatgaggctggtgctaggatcgccaaatggcgtgccatgatgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacacattgttgaacccgacatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtacgttgtcgaagcctaacatggtcactcctggtgctgaatcccccaaggttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1979" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1617" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="298" r_length="229" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="129" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="759" r_length="461" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E692449" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATT-AATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCT-GCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCA</genome_strand>
        <mrna_strand>ACTGTTTCTCTCACTTTCTTCAAATCTAAGCTTATTGAGTCACGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAATAATGCTACGTACATTGGTACCCCTGGAAAGGGTATCCTTGCTCGCTGATGAATCTACTGGAACAATGGGAAAGCGTCTCTCGAGCATCAATGTCGAAAATGTAGAATCAAACACGAGGGCTCTCCTCGAGCTTCTCTTTTGCACCCCTGGATGTCTTCACTACCTTATCGGTGTTATCTTGTTCGAGGAGACACTTTACCAAAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAAGAAGCTGGAGTCCTTCCCGGGATTAAGGTTGACAAGGGTACCGATGAACTCCCCGGGACCGAGGGTGAGACCACCACTCAAGGCCTTGATGGACTTGCAGAACGATGCCAAAACTACTATGAGGCTGGTGCTAGGATCGCCAAATGGCGTGCCATGATGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACACATTGTTGAACCCGACATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACGTTGTCGAAGCCTAACATGGTCACTCCTGGTGCTGAATCCCCCAAGGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724344" ref_strand="+" ref_description="SGN-E724344 [FC23DC11]">
      <seq>atcggccgaattgataaacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1985" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1685" g_stop="1617" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="82" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="310" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="130" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="770" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E724344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1685" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGC</genome_strand>
        <mrna_strand>ATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723631" ref_strand="+" ref_description="SGN-E723631 [FC21AE12]">
      <seq>taaacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcccaaggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1984" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1684" g_stop="1617" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="296" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="131" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="755" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E723631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1684" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTG</genome_strand>
        <mrna_strand>TAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700447" ref_strand="+" ref_description="SGN-E700447 [FA13AF02]">
      <seq>acttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggccactcctggttctgaatctcccaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1981" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1681" g_stop="1617" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="293" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="133" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="750" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E700447" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1681" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGT</genome_strand>
        <mrna_strand>ACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGCCACTCCTGGTTCTGAATCTCCCAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212135" ref_strand="+" ref_description="SGN-E212135 [cLEC-75-J19]">
      <seq>attaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaagcctaacatggtcactcctggttctgaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1951" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1651" g_stop="1617" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="263" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="139" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="714" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E212135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1651" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCC</genome_strand>
        <mrna_strand>ATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325628" ref_strand="+" ref_description="SGN-E325628 [cTOC-15-N24]">
      <seq>ttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaagctctcaatgaccaccatgtccctccttgaangtaccttgntgaagcctaacatggtcactcctggttctgaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1939" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1639" g_stop="1617" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="251" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="139" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="703" r_length="452" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E325628" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1639" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGT-CCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCC</genome_strand>
        <mrna_strand>TTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAAGCTCTCAATGACCACCATGTCCCTCCTTGAANGTACCTTGNTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697545" ref_strand="+" ref_description="SGN-E697545 [FA03BC06]">
      <seq>cgcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaatcctaacatggtcactcctggttttgaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1270" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="971" g_stop="747" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="139" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="676" r_length="451" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E697545" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="971" e_stop="747"/>
          <exon e_start="589" e_stop="139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCC</genome_strand>
        <mrna_strand>CGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAATCCTAACATGGTCACTCCTGGTTTTGAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701766" ref_strand="+" ref_description="SGN-E701766 [FA16DE12]">
      <seq>ctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtggagcttctcttttgcaccccgtggttgtcttcaataccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccgatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgatatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaggtaccttgttgaaacctaacatggtcactcctggttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1238" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="938" g_stop="747" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="141" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="643" r_length="449" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E701766" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="938" e_stop="747"/>
          <exon e_start="589" e_stop="141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGT-GAGCTTCTCTTTTGCACCCC-TGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCT</genome_strand>
        <mrna_strand>CTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGGAGCTTCTCTTTTGCACCCCGTGGTTGTCTTCAATACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCGATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGATATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAACCTAACATGGTCACTCCTGGTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213724" ref_strand="+" ref_description="SGN-E213724 [cLEC-76-H10]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccacccatgtcctccttgaangtaccttgttgaagcctaacatggtcactcctggttctgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="142" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="726" r_length="449" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E213724" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCA-CCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATC</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCCATGTCCTCCTTGAANGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577641" ref_strand="+" ref_description="SGN-E577641 [LE15BB10]">
      <seq>cttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctncttgaaggtaccttgttgaagcctaacatggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1980" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1680" g_stop="1617" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="292" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="156" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="726" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E577641" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1680" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACT</genome_strand>
        <mrna_strand>CTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTNCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559735" ref_strand="+" ref_description="SGN-E559735 [19278]">
      <seq>ctctcactttcttcaaatctacttttttaaacgcttattaatcatgtcttgctacaaaggaaagtatgctgatgaacttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccataatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgcgctgatgttaccgagcgtgtacttgctgcttgctacaaggctctcaatgaacaccatgtcctccttgaaggtaccttgttgaagcctaacatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1977" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="71" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="299" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="160" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="729" r_length="430" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E559735" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGT</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAAGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATAATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGCGCTGATGTTACCGAGCGTGTACTTGCTGCTTGCTACAAGGCTCTCAATGAACACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578558" ref_strand="+" ref_description="SGN-E578558 [85676]">
      <seq>ctcactttcttcaaatctacttttttaaagcttattaatcatgtcttgctacaaaggaaagtatgctgatgaacttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccataatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgcgctgatgttaccgagcgtgttcttgctgcttgctacaaggctctcaatgaccaccatgtccttctttaaaggtaccttgtttgaaagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="68" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="296" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="167" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="722" r_length="426" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E578558" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCC-TCCTTGAAGGTACCTTG-TTG-AAGCCTA</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAAGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATAATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGCGCTGATGTTACCGAGCGTGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTTCTTTAAAGGTACCTTGTTTGAAAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321382" ref_strand="+" ref_description="SGN-E321382 [cTOB-23-P6]">
      <seq>cttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctccttgaaaggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1269" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="969" g_stop="747" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="179" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="634" r_length="411" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E321382" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="969" e_stop="747"/>
          <exon e_start="589" e_stop="179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCT</genome_strand>
        <mrna_strand>CTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAAGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574253" ref_strand="+" ref_description="SGN-E574253 [33692]">
      <seq>taagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttggctgctgatgaatccactggcaacaattggaaagcgtcgttctcggagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgaacttctcttttgcacccctggttgtcttcagtatcttatcggtgttatcttggttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgcaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgtgctgatgttacccgagcgtgtncttgctgcttgctacaagggtctcaatgaccaccatgtcctccttggaaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1958" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1658" g_stop="1617" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="276" r_length="234" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="182" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="685" r_length="409" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E574253" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1658" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTT-GCTGCTGATGAATCTACTGG-AACCATTGGAAAGCGTC--TCTC-GAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTT-GTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTA-CCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTT-GAAGGTA</genome_strand>
        <mrna_strand>TAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGGCTGCTGATGAATCCACTGGCAACAATTGGAAAGCGTCGTTCTCGGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAACTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTATCGGTGTTATCTTGGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCG-CAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGTGCTGATGTTACCCGAGCGTGTNCTTGCTGCTTGCTACAAGGGTCTCAATGACCACCATGTCCTCCTTGGAAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575623" ref_strand="+" ref_description="SGN-E575623 [35275]">
      <seq>gcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgataagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaagagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgtgctgatgttaccgaggcgtgttcttgctgcttgctacaaggctctcaatgaccaccatgtcctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1955" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1655" g_stop="1617" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="267" r_length="228" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="190" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="669" r_length="402" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E575623" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1655" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGA-AGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGA-GCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCT</genome_strand>
        <mrna_strand>GCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGATAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAGAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGTGCTGATGTTACCGAGGCGTGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259220" ref_strand="+" ref_description="SGN-E259220 [cLEG-43-F5]">
      <seq>ttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaagctctcaatgaccaccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1979" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1679" g_stop="1617" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="291" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="196" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="685" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E259220" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1679" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGT</genome_strand>
        <mrna_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAAGCTCTCAATGACCACCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335742" ref_strand="+" ref_description="SGN-E335742 [cTOE-8-J9]">
      <seq>gaggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="891" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="592" g_stop="196" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E335742" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="592" e_stop="196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGT</genome_strand>
        <mrna_strand>GAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314528" ref_strand="+" ref_description="SGN-E314528 [cTOA-20-A9]">
      <seq>aaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggctctcaatgaccaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1963" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="1617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="275" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="198" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="667" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E314528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCAT</genome_strand>
        <mrna_strand>AAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719743" ref_strand="+" ref_description="SGN-E719743 [FC08DA09]">
      <seq>atgttgctacatgcttctttaatttatatccataaagatagtgtatttttggagaatcccttaaaaatgaagtgatttgtgattgataagaggtaattaatggttgattatctgtagatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtaaaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggtatgttttgaagaaattgatttgttagcattgattattgttttatttgattgttgaatttaagtgtaggctcgatctcgtttacgtttatgacagaaagtgtaggattagtagtagtagtagtagcattacattgatgatctgatattggtggcaggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcaaaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgctacaaggttctcaatgaccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1391" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1091" g_stop="200" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="892" r_length="892" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E719743" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1091" e_stop="200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACC</genome_strand>
        <mrna_strand>ATGTTGCTACATGCTTCTTTAATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCCTTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAAAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAAAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGTTCTCAATGACCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214463" ref_strand="+" ref_description="SGN-E214463 [cLEC-77-L23]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="220" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="647" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E214463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTA</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579720" ref_strand="+" ref_description="SGN-E579720 [86852]">
      <seq>tgaacttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccgctggaacaattggaaagcgtctctcgagcatcagtgtcgagaatgtagaatcgaacaggagggctctccgggagcttctcttttgcacccctggtggtcttcagtatcttagcggtgttatctagtgcgaggagacactctaccagaagagtgttgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagagcaccacccagggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcggcaaatggcgtgccgtgtcgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccataatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagcccatgacattcagaagtgcgctgatgttaccgagcgtgttcttgctgcttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1273" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="973" g_stop="747" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="220" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="597" r_length="370" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E579720" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="973" e_stop="747"/>
          <exon e_start="589" e_stop="220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTA</genome_strand>
        <mrna_strand>TGAACTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCGCTGGAACAATTGGAAAGCGTCTCTCGAGCATCAGTGTCGAGAATGTAGAATCGAACAGGAGGGCTCTCCGGGAGCTTCTCTTTTGCACCCCTGGTGGTCTTCAGTATCTTAGCGGTGTTATCTAGTGCGAGGAGACACTCTACCAGAAGAGTGTTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGAGCACCACCCAGGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGGCAAATGGCGTGCCGTGTCGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATAATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGCCCATGACATTCAGAAGTGCGCTGATGTTACCGAGCGTGTTCTTGCTGCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314654" ref_strand="+" ref_description="SGN-E314654 [cTOA-20-D20]">
      <seq>aaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1963" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="1617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="275" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="222" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="643" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E314654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGC</genome_strand>
        <mrna_strand>AAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708005" ref_strand="+" ref_description="SGN-E708005 [FA34CC10]">
      <seq>cctttttgggttcaaatctaagcttattaatcatgtcttgctacaatggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1966" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1676" g_stop="1617" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="288" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="224" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="654" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E708005" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1676" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTT</genome_strand>
        <mrna_strand>CCTTTTTGGGTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAATGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301504" ref_strand="+" ref_description="SGN-E301504 [cLEW-23-M17]">
      <seq>tgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaagttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgttaccgagcgcgttcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1938" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1638" g_stop="1617" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="250" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="228" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="612" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E301504" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1638" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCT</genome_strand>
        <mrna_strand>TGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAAGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256049" ref_strand="+" ref_description="SGN-E256049 [cLEG-35-F14]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="247" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="620" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E256049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGT</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275892" ref_strand="+" ref_description="SGN-E275892 [cLEN-12-I7]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="248" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="619" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E275892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATG</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336115" ref_strand="+" ref_description="SGN-E336115 [cTOE-12-A23]">
      <seq>tttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1970" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1617" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="282" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="249" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="623" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E336115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGAT</genome_strand>
        <mrna_strand>TTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204627" ref_strand="+" ref_description="SGN-E204627 [cLEC-14-C4]">
      <seq>gagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtgcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1180" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="880" g_stop="747" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="251" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="473" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E204627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="880" e_stop="747"/>
          <exon e_start="589" e_stop="251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTG</genome_strand>
        <mrna_strand>GAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697801" ref_strand="+" ref_description="SGN-E697801 [FA04BC07]">
      <seq>ctgcaggaattcggcacgacgacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccaccaaaatggtcttgtacccattgttgagcccgagatccttgtcgatggagcccatgacattaaaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1981" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1679" g_stop="1617" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="86" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="314" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="256" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="648" r_length="334" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E697801" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1679" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTG</genome_strand>
        <mrna_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCACCAAAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590871" ref_strand="+" ref_description="SGN-E590871 [44666]">
      <seq>cttctctcactttcttcaaatctactttttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgaacttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagcatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccaacagaatggtccttgtacccattgttgagcccgagattcttggttgatggagcccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1980" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="73" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="301" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="268" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="624" r_length="323" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E590871" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGT-CTTGTACCCATTGTTGAGCCCGAGATCCTT-GTCGATGGAGCCCATGA</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAACTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAG-CATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAACAGAATGGTCCTTGTACCCATTGTTGAGCCCGAGATTCTTGGTTGATGGAGCCCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559602" ref_strand="+" ref_description="SGN-E559602 [19125]">
      <seq>ctcactttcttcaaatctacttttttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctgcatacattggcacccctggnaaagggtatccttggctgctgatgaatccactggaacaattggaaagcgtctttcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggnttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccaaaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggactgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgttgccaaaagtactatgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttgagcctgagatccttgttgatggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="69" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="300" r_length="231" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="274" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="616" r_length="316" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E559602" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGG-AAAGGGTATCCTT-GCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGG-TTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGC</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTGCATACATTGGCACCCCTGGNAAAGGGTATCCTTGGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTTTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGNTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAAAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACTGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGTTGCCAAAAGTACTATGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCTGAGATCCTTGTTGATGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592108" ref_strand="+" ref_description="SGN-E592108 [45835]">
      <seq>ctctcactttcttcaaatctacttttttaaagcttattaatcatgtcttgctacaaaggaaagtatgctgatgaacttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccataatttgccagcagaatggtcttgtacccattgttgagcccgagatccttgttgatggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1977" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="70" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="298" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="274" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="614" r_length="316" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E592108" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGC</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAAGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATAATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTTGATGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418547" ref_strand="+" ref_description="SGN-E418547 [STM-27-F4]">
      <seq>ttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccctgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggtttgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtacccattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1617" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="273" r_length="228" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="299" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="564" r_length="291" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E418547" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTG</genome_strand>
        <mrna_strand>TTTTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCTGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTTGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585315" ref_strand="+" ref_description="SGN-E585315 [67773]">
      <seq>cactttcttcaaatctacttttttaaagcttattaatcatgtcttgctacaaaggaaagtatgctgatgaacttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccnaccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccataattttgcagcagaatggtcttgtacccattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="66" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="294" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="301" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="583" r_length="289" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E585315" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGT</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAAGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCNACCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATAATTTTGCAGCAGAATGGTCTTGTACCCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246531" ref_strand="+" ref_description="SGN-E246531 [cLEF-45-G10]">
      <seq>tctcattctctctataaacttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1998" stop="5"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1698" g_stop="1617" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="310" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="305" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="595" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E246531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1698" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCA</genome_strand>
        <mrna_strand>TCTCATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310111" ref_strand="+" ref_description="SGN-E310111 [cLEZ-8-L12]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="5"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="305" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="562" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E310111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCA</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250595" ref_strand="+" ref_description="SGN-E250595 [cLEG-7-M17]">
      <seq>taatgctacatttattggtccccctggaaagggtatccttgcggctgattaatctactggaaccatcgccaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttatctgagtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactactaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccattaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1260" stop="5"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="961" g_stop="747" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="305" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="500" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E250595" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="961" e_stop="747"/>
          <exon e_start="589" e_stop="305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCA</genome_strand>
        <mrna_strand>TAATGCTACATTTATTGGTCCCCCTGGAAAGGGTATCCTTGCGGCTGATTAATCTACTGGAACCATCGCCAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTATCTGAGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACTAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATTAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559946" ref_strand="+" ref_description="SGN-E559946 [19523]">
      <seq>aaacttctcactttcttcaaatctacttttttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctgcatacattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctttcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccaaaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggactgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgttgccaaaagtactatgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccattatttgccagcagaatggtcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1983" stop="9"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="75" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="303" r_length="228" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="309" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="584" r_length="281" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E559946" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTA</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTGCATACATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTTTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAAAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACTGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGTTGCCAAAAGTACTATGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561577" ref_strand="+" ref_description="SGN-E561577 [16967]">
      <seq>aagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttggctgctgatgaatccactggaacaattggaaagcgtctctcggagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgataagggtaccgttgagctccccgggaccgatggtgagaccaccacccaagggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcaggttggcatcaatgataacgccaatgggcttggcagatacgccattatttggcagcagaatggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1957" stop="12"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1657" g_stop="1617" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="271" r_length="230" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="312" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="550" r_length="279" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E561577" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1657" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTT-GCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTC-GAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAA-GGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTT</genome_strand>
        <mrna_strand>AAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGATAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGGTTGGCATCAATGATAACGCCAATGGGCTTGGCAGATACGCCATTATTTGGCAGCAGAATGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559458" ref_strand="+" ref_description="SGN-E559458 [18959]">
      <seq>ctcactttcttcaaatctactttttttaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgataagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattggtgccaatgagccatctcagcttgccatcaatgataacgccaatggccttgccagatacgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="34"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="68" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="296" r_length="228" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="334" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="552" r_length="256" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E559458" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCAT</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGATAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699266" ref_strand="+" ref_description="SGN-E699266 [FA09BD09]">
      <seq>tttcttcaaatctaagcttattaatcatgatcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgcccagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgacgagacactttaccagaagactgctgctggcaagcctttccttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgtcgccacaagtactaccaggctggcgctaggttccccaaatggcgtgctgcgttgaacattggtgccaatgagccatctcacctcgccatcaatgataacgccaatggcccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1970" stop="45"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1617" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="283" r_length="228" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="345" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="529" r_length="246" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E699266" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAATCTAAGCTTATTAATCATG-TCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGG-CCTTGCC</genome_strand>
        <mrna_strand>TTTCTTCAAATCTAAGCTTATTAATCATGATCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGCCCAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGACGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCCTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTCGCCACAAGTACTACCAGGCTGGCGCTAGGTTCCCCAAATGGCGTGCTGCGTTGAACATTGGTGCCAATGAGCCATCTCACCTCGCCATCAATGATAACGCCAATGGCCCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207144" ref_strand="+" ref_description="SGN-E207144 [cLEC-30-M3]">
      <seq>ctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgataacgccaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1959" stop="51"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1659" g_stop="1617" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="271" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="351" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="510" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E207144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1659" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGC</genome_strand>
        <mrna_strand>CTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249998" ref_strand="+" ref_description="SGN-E249998 [cLEG-4-H3]">
      <seq>gttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaagaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1966" stop="63"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1667" g_stop="1617" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="279" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="363" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="506" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E249998" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1667" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGAT</genome_strand>
        <mrna_strand>GTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAAGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311691" ref_strand="+" ref_description="SGN-E311691 [cLEZ-9-H2]">
      <seq>tattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1952" stop="63"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1652" g_stop="1617" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="264" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="363" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="491" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E311691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1652" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGAT</genome_strand>
        <mrna_strand>TATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246067" ref_strand="+" ref_description="SGN-E246067 [cLEF-54-O24]">
      <seq>cttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaagattggtgccaatgagccatctcagctcgccatcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1940" stop="64"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1640" g_stop="1617" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="252" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="364" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="478" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E246067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1640" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGA</genome_strand>
        <mrna_strand>CTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579499" ref_strand="+" ref_description="SGN-E579499 [86628]">
      <seq>cttctctcactttcttcaaatctacttttttaaagcttattaatcatgtcttgctacaaaggaaagtatgctgatgaacttatcaagaatgctgcatatattggcacccctggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgaacttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgacaagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaaatggcgtgccgctgttgaagattggtgccaatgagccatctcagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1980" stop="74"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="73" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="301" r_length="228" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="374" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="519" r_length="218" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E579499" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCC-AAATGGCGTGCTG-TGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCG</genome_strand>
        <mrna_strand>CTTATTAATCATGTCTTGCTACAAAGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTATCAAGAATGCTGCATATATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAACTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGACAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAAATGGCGTGCCGCTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558361" ref_strand="+" ref_description="SGN-E558361 [17689]">
      <seq>tgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatcttggttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgataagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacgaggctggtgctaggttcgccaaatggcgtgccgtgttgaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1219" stop="98"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="919" g_stop="747" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="398" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="366" r_length="192" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E558361" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="919" e_stop="747"/>
          <exon e_start="589" e_stop="398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTT-GTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTG</genome_strand>
        <mrna_strand>TGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCTTGGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGATAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCCGTGTTGAAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273786" ref_strand="+" ref_description="SGN-E273786 [cLEN-7-L19]">
      <seq>acttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacgaggctggtgctaggttcgccaaatggcgtgctgtgttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1981" stop="102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1681" g_stop="1617" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="293" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="402" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="481" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E273786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1681" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAG</genome_strand>
        <mrna_strand>ACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209541" ref_strand="+" ref_description="SGN-E209541 [cLEC-54-P3]">
      <seq>ttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctgcctacattggtacccctggaaagggtatccttgctgctggatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgcgatcttggttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggggttaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactactaggctggtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1979" stop="131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1679" g_stop="1617" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="292" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="431" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="451" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E209541" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1679" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCT-GATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTA</genome_strand>
        <mrna_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTGCCTACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGCGATCTTGGTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGGGTTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACTAGGCTGGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272817" ref_strand="+" ref_description="SGN-E272817 [cLEM-25-G19]">
      <seq>ttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtactacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1979" stop="143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1679" g_stop="1617" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="291" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="443" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="438" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E272817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1679" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACG</genome_strand>
        <mrna_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558239" ref_strand="+" ref_description="SGN-E558239 [17548]">
      <seq>ctcactttcttcaaatctactttttttaagcttattatcatgtcttggctacaagggaaagtatgctgatgagcttatcaaagaatgctgcatatattggcaccccttggaaagggtatccttgctgctgatgaatccactggaacaattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtatcttagcggtgttatccttgttcgaggaaacactctaccagaagactgctgctggcaagccttttgttgaagtcatgaaggaagctggagtccttcccggtattaaggttgataagggtaccgttgagctccccgggaccgatggtgagaccaccacccaaggtcttgatggtcttgcagaacgatgccaaaagtactacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1960" stop="143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1654" g_stop="1617" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="68" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="299" r_length="231" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="443" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="446" r_length="147" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E558239" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1654" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTAATCATGTCTTG-CTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTAT-TAAGAATGCTACATACATTGGTACCCC-TGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGAT-CTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACG</genome_strand>
        <mrna_strand>CTTATTA-TCATGTCTTGGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATCAAAGAATGCTGCATATATTGGCACCCCTTGGAAAGGGTATCCTTGCTGCTGATGAATCCACTGGAACAATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTATCTTAGCGGTGTTATCCTTGTTCGAGGAAACACTCTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTTGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCCGGTATTAAGGTTGATAAGGGTACCGTTGAGCTCCCCGGGACCGATGGTGAGACCACCACCCAAGGTCTTGATGGTCTTGCAGAACGATGCCAAAAGTACTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274027" ref_strand="+" ref_description="SGN-E274027 [cLEN-8-D7]">
      <seq>tcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1974" stop="145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1674" g_stop="1617" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="286" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="445" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="431" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E274027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1674" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTA</genome_strand>
        <mrna_strand>TCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311780" ref_strand="+" ref_description="SGN-E311780 [cLEZ-9-O2]">
      <seq>tcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1974" stop="145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1674" g_stop="1617" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="286" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="445" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="431" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E311780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1674" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTA</genome_strand>
        <mrna_strand>TCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311749" ref_strand="+" ref_description="SGN-E311749 [cLEZ-9-C8]">
      <seq>cactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgccagaagtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1973" stop="145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1673" g_stop="1617" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="285" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="445" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="430" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E311749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1673" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTA</genome_strand>
        <mrna_strand>CACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274221" ref_strand="+" ref_description="SGN-E274221 [cLEN-8-N24]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtacaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttaacggtgtgatcttgtttgaggagacactttaccaaaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactcctcgggaccgatggtgagaccaccactcaaggtcttgatggtctcgcagaacgttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="455" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="412" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E274221" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCC</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTACAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAACGGTGTGATCTTGTTTGAGGAGACACTTTACCAAAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCTCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256115" ref_strand="+" ref_description="SGN-E256115 [cLEG-37-J15]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagcctgctgatgagctcattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccatcggaaagcgtctctcgagcatcactgtctagaatgtataatcaaacaggagggctctccgtgagcttctgttttgcacccctggatgacttcagtaccttagcggggtgatcttgtttgaagagacactttaccagaagactgctgctggcgagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaacgttgacactggtaccgatgaactccccgggaccgatggcgagaccacctctcacagtcttgatggtctccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="465" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="402" r_length="125" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E256115" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCA</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGCCTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTCATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATCGGAAAGCGTCTCTCGAGCATCACTGTCTAGAATGTATAATCAAACAGGAGGGCTCTCCGTGAGCTTCTGTTTTGCACCCCTGGATGACTTCAGTACCTTAGCGGGGTGATCTTGTTTGAAGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCGAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAACGTTGACACTGGTACCGATGAACTCCCCGGGACCGATGGCGAGACCACCTCTCACAGTCTTGATGGTCTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258194" ref_strand="+" ref_description="SGN-E258194 [cLEG-49-M6]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="469" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="398" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E258194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCT</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263177" ref_strand="+" ref_description="SGN-E263177 [cLEG-62-M12]">
      <seq>tcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggttgacaagggtaccgttgaactccccgggaccgatggtgagaccaccactcaaggtcttgatggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1965" stop="169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1617" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="277" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="589" g_stop="469" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="398" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E263177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1617"/>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCT</genome_strand>
        <mrna_strand>TCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204550" ref_strand="+" ref_description="SGN-E204550 [cLEC-24-O13]">
      <seq>acaaaggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgtgagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgatagaggagacactttaccaaaagactgctgctggcaagcctttcgttgaagtcatgaaggaagctggagtccttcctggtattaaggctgacaagggtaccgttgaactcccctggaccgatggtgagaccaccactcaaggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1281" stop="177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="974" g_stop="747" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="246" r_length="228" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="589" g_stop="477" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="359" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E204550" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="974" e_stop="747"/>
          <exon e_start="589" e_stop="477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTT</genome_strand>
        <mrna_strand>ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGATAGAGGAGACACTTTACCAAAAGACTGCTGCTG.............................................................................................................................................................GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGCTGACAAGGGTACCGTTGAACTCCCCTGGACCGATGGTGAGACCACCACTCAAGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303507" ref_strand="+" ref_description="SGN-E303507 [cLEX-2-H11]">
      <seq>tgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagcatcaatgtcgagaatgtagaatcaaacaggagggctctccgggagcttctcttttgcacccctggttgtcttcagtaccttagcggtgtgatcttgtttgaggagacactttaccagaagactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1275" stop="451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="976" g_stop="751" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E303507" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="976" e_stop="751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCT</genome_strand>
        <mrna_strand>TGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGGGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301070" ref_strand="+" ref_description="SGN-E301070 [cLEW-22-L13]">
      <seq>agggtatccttgctgctgattaatctactggaaccattggaaagcgcctctcgagcatcaatgtccagaatgtagaataaaacaggagggctctccgtgagcttctattttgcacccctggatgtcttcattaccttaacggtgtgatcttgtttgaggagacactttaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1232" stop="458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="932" g_stop="759" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E301070" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="932" e_stop="759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGA</genome_strand>
        <mrna_strand>AGGGTATCCTTGCTGCTGATTAATCTACTGGAACCATTGGAAAGCGCCTCTCGAGCATCAATGTCCAGAATGTAGAATAAAACAGGAGGGCTCTCCGTGAGCTTCTATTTTGCACCCCTGGATGTCTTCATTACCTTAACGGTGTGATCTTGTTTGAGGAGACACTTTACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326452" ref_strand="+" ref_description="SGN-E326452 [cTOC-14-F22]">
      <seq>ctttcttcaaatctaagctgattaatcatgtcttgctacaagggaaagtctgctgatgagcttattaagaacgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattgtatagcttctatcgagcatcaatgtcgagaatgtagaatcaaacatgagggctctccgtgagcttctctttagcacccctggatgtcttcagtaccttagcggtgtgatcttgtttgacgagactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1971" stop="465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1671" g_stop="1617" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="765" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="265" r_length="210" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E326452" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1671" e_stop="1617"/>
          <exon e_start="974" e_stop="765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTT</genome_strand>
        <mrna_strand>CTTTCTTCAAATCTAAGCTGATTAATCATGTCTTGCTACAAGGGAAAGTCTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAACGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGTATAGCTTCTATCGAGCATCAATGTCGAGAATGTAGAATCAAACATGAGGGCTCTCCGTGAGCTTCTCTTTAGCACCCCTGGATGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGACGAGACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695357" ref_strand="-" ref_description="SGN-E695357 [LH_Ea06F03](-)">
      <seq>gcttattgaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaacaattggaaagcgtctctcgagcttcaatgtcaagaatggaaaatcaaacaggaggggtctccgcgagcttctcttttgcacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1955" stop="515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1655" g_stop="1617" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="0.95"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="815" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="200" r_length="160" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E695357" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695357" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1655" e_stop="1617"/>
          <exon e_start="974" e_stop="815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATT-AATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCC</genome_strand>
        <mrna_strand>GCTTATTGAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACAATTGGAAAGCGTCTCTCGAGCTTCAATGTCAAGAATGGAAAATCAAACAGGAGGGGTCTCCGCGAGCTTCTCTTTTGCACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213306" ref_strand="+" ref_description="SGN-E213306 [cLEC-71-D19]">
      <seq>ttctctcactttcttcaaatctaagcttattaatcatgtcttgctacaagggaaagtatgctgatgagcttattaagaatgctacatacattggtacccctggaaagggtatccttgctgctgatgaatctactggaaccattggaaagcgtctctcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="1979" stop="577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1679" g_stop="1617" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="974" g_stop="877" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="161" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E213306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1679" e_stop="1617"/>
          <exon e_start="974" e_stop="877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTGGTAAGTACTTTTACTTTGTTCGAATCTTGATTTTTTGATCCAAGATTTGATTTTTTTGATAGATCTTGTTGTTTTGTCATCTGGGGTTGTGTTGTTTTTGGATCTTGGTTGTTGGGTATTTTTTATTTTTTGTTTTGATGTAAAGACTACAACTTTCTTGAAGAAAAAAAAAAGTTTTGATCTTTGTGTTTGAAGGTTCCCTTTCATGGTCCCACTTATAGATCTTTGTGTTTGTTTTTATCTTTATGATTGTTATTTGCTTAATTATTAATCATAATATAGTTGTTGATTTTTTTTTAATATATAATTTTTGTTGTATGTTTAGTCTGGATCTGATTGAAACTTGTGATAGTTTGTTGTAGCATGTTAATTCCTGTTTTAGTTTAATTTGTGTATAGTTTATAGATCTTAAAGTTCAAATCTTTTTAACAAATGGTACTAATTGTCCATGAAAATTAGGATTAGGGTTAGGATTTGGTTGTCTACACTGTTCTTGATTGAATCTGTTGATTTATGTTTTAGTTTATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGC</genome_strand>
        <mrna_strand>TTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549014" ref_strand="+" ref_description="SGN-E549014 [TUS-66-I4](-)">
      <seq>ggggttagagcagcaattactgatggttttgatgaatgctgatgtgtgccaagggtgggttagagataacgaaacgaaagtaaggaaaatagggcatgtggatgtggacgaggcgtttgagctttgtgatagactttcgaaacagatgttggattgtacagcctcggatttagctatggaggatgtgatttattcgttggataaagctatacaagatggggcaattccttttgatcagtacttgaggaatgtaaggttgttgtcgcgtgaacaattcattcatcgtgccacggcgtcaaaggttaaggctgttcagatgcaggctcaagtttctcatatggcttctaggctgtctcaatatactttgtcatagatgttgaattacttggattatgtgtgcactatggacggaagaggttagttttttttcaagtggaatttgatgtggagtggaacagttgagacatatgcttgggctcttcaaagataccaactgatgtgtatcggattcgaatcctccacaagctatgtatcttttcgaggacctccgtgggtagcaacatttttggaaggtccgagcaaagactatttgggtgctatcgtttgataatgatcattttttcttccctaagagatctctccctgttgagttttcagttgaactgagcaaaaacttttgttttttgataggtaactacagtttgaagtaattgctttgaaggctactgtcattattttgattcacttgtttcgaaattcgagagtcgaaaattacaaattttttaatgtttgaagttgatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="14548" stop="9015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14248" g_stop="13816" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13815" i_stop="9690" i_length="4126">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9689" g_stop="9311" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="812" r_length="379" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E549014" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14248" e_stop="13816"/>
          <exon e_start="9689" e_stop="9311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTAGAGCAGCAATTACTGATGGTTTTGATGAATGCTGATGTGTTGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAGGTAGGTTGCTTGTGATTAATATGTCATTGAATTTTGACACTACATAACGGCATAGCTCTGTATGTTCTTCAATGATTGTATCTGTTAGATAGCAAAAGCATTGTGTGATTTGAGAGATTTTCCTGACAATGGGTATCCCCAATATTTTAATTTCTTTACGAGTCTTTGCACGTCTAATTGGCATTTGGACCAATGATAAGCTTATGTCAATATATTCAAAGAGATGAATTGTAACAAATACTAAATATATACTTCTGCTTGAGATGGATATTTGTACCAGTGAGTCCTTTTGTAAGTTATCATATCTTTGTATACTACATAACTTATTGTACTTGCCATGCTTCATTTGCTCCCACTTATAAATTTATCATCAGAAGTTCCAAAACTGATCCATGACCGAGTTTTGAACCGTGCCCTAACTGGCTCTCGGGGCTATCTCAGTTGCCAAAAGTTAAAAAAAGCTCCTAAATGTATCCCTCTTATTAAAGCTGTTTGGAGGTGTGTTCATTTGTTGTCACATTGGCGTGGAACTTCAGTAAGTGAAGCTTAATTGCTTGATTTGATTAAAAAGAGTGAACTTGAAGGTGTATAGAGGGGATAACTTTATAATTGGTCCATTCGGAAGATACAGTTGTTGTGAACACAATCTTTTCCTAATTCACTTTCATTTTCCCATACTAGTTTGTCTAGCTATGCCTCAAAAGGCATTTCAGTTGAGGAGTTCTGTAAGCCATTTATTCTCTCTGAATTGACAAAAACTATTTGGGACTACAACTTCTTAAATGTATTAGAGCTTGAAGTCACATAAGATGCCATTTATGTGAATGATTTCTATAAGTTGAATTAGATGTACATCTTTGGAATTTACCGAATCTCCTACATATTTGTGCCATAAACTTCAGCTAGAGTGGGGAAATTTTAAGCAACTCCTTATAGAATTGTGTTCTTGTGGTATTTACCATAGTATGAACTAGACATATACATTTTACATTGAGAGTGAAGAGAAAATCAATAAATTCTCATTGACTTTGTTTAAGTATCAATGGACAAAAATGTCTGTAAATTAGTTTATTTCTAGTCATTCATTTGAAGAAATTACTCGAGACTGTTGCTTGTCCTAAACTATACCTTCTTGGAGGGGTGGGTGCGTTACTCCTAGTGTTGTCAAAGGTGCGCTTAAGCCCTAAATCGAGTTGCAAAACATATTGAGTGTTTCGTCTCGCTTAGTGTGCACTTTAATGTTGTCATCAAGGCTCTAAGACTTAACTTTCCTGGCTAATGAGCCTTTTATCTTTTTTTATTTTTTTATGAAGATAGATTTTGTATAGCTGGCATCAAGAAGATGCAAAGTTACAAAAGATACGTTAGTTCTTACAACAACAGACCTTGAAGCATAGGGAGCTAATAAAAAACAAAAGAGGGCTCAGATAAATGGAGGACTGAAAACTAACAGCAATTGACTTACTAACAAATACAAGACTTGACCATATTAAAAGACTGATAGCTGGTAAGTTTCCTCCAAACACAACTCCAATACCACCTCCATGATAATTATTAATTAAGAAGTCTCCTCCTCTTCTGGTTTAGGGATACATTTACTTTTTTTCCCTTTTTAACTTTGTCCAACCACGACTAGATTGCCATGAACTGGTCCAACGTAAGTTTGACTGACAGTATATTTGAGTGCCTCAAAGACATTTGATTTGCCTACATCAGTATGATCATGTTAGAGATCGTCTAGTATCTATTCAAGAAATATATTCTATACTTGTGGAGCCATAGGAATATGATTTTTCACTTGGTGAAAAGAGTAAAACACCCACATCTGCTCCGGTCAGAGTTGAATAGTATTTGCTTTCTTGATCAAGCCTTTTTTCCTTACGAGAAAGTAACAGTGCGTGCTTCCTTTGACTCAATCAATTTCATATTAATCTTTTGCCTACCCTTCCCAATCCTCTGTATCCATTGCAAAAAAAATAAAATAATTAAAGAAGAAAATAAGATGTTTTGGCTGAATAAACCTGAGCAAGTCTATTTGTCACACGTATTGTTGTTTTCACATTATGAGTCTATTTGCCATGTGTATTGTCACGTTTATTTAGTGTTCTAATATTATGTGAATCTATGATGCGATTACCATGAATCCCAACAAAAATTTTCTTCTTATTTATTCTGCTACAATTGCTAAGTAATAATGTTGGATTGTATCTAAAGATAAATGAAAATTAAATTGTTAAGTTTGTTGATTGTTTTTATGAGTCTATTTGTGACGTGTATTCACGTTTATTTGGTGTTTTCATATTATGTGAATCTATTACGGGATGGTGATAAAACCAAAACTTTGTCGAAATCCCTTCAAAACATCTTCTATTCCTTTCTATCCAAACACACCGAAAAATACAGCTAGGGATCATTTTCCAGATGTTCTTGGTACTTTGTTTTATCTCCAAGAATTCAGGTTTTCAACTCCTACCCTTATAGTCAAAGGTAGTGTCCATGAGAGGTCAAAAACTGATATTTCCCTTTTTTCACAAAAAAAAATTCTAATTTCTTTGTCCATATATTGTTATTCATGCTTATAATTATTTGTCTTGGATTACCCATACATATTTGTATTTTGTTCTTCATTTGCACGCTTCTTTATTAAAGTCAACACTTCATTCGCACTTAAAACTATAGTGGACCTTAGAGATTTTTTTTGCATTTTTTCGAGTTTGATAAGACTGATTCTCCCTTGGTAATAGTGTTTGATTTGGCATGAGGCTCAATATAATTGTTGTCTATAATATATATATCATCTATGGCAAAGGAAGAAGGTAGTAATATCTAAAAGTTAGTTTAGCAAAAAAAAAGCCCATCGTAGTGACTTTCGAATTTGTTCTACTCGTGTGAATTTGAAACCTTGAAACTTTTGTTACCTTTTTTGATAAGGTAATTTTGAAGTCTTGAAAGTTGTGGAGGTTGTATACAATTATATTATTAGTAGGATGGTGTGGTATATTTTGGAAATGTATTTTAACAAGGCATATTTGGGATGACTTGAAATGAAAAGAACGTCATATAAATTAGGAGGAAGGAAGAGTATGATAACCTGCAGAGATTTTGATACTTAACAAAAGGTAAAGCATCGAACACTCTTGTTAGGTCCTTCAGTTAATAGGGATTGTTGGGTTGGTGGTTAATAACGTTTGACCTCATTTAAGACCTCAATTTTTTTTATTGATACTGTGGTGTCTAGGTTATTTTTCGTGCACCTAGACTATTTTCACAGGATATAGATGCTGATAACTTTGTCCAAAGCTTGGACAAGTTGGAAGAAATCACCTCGTATTTTTGCCTTTGCTGGGATTAGTACCTTAGACCTCATTGATCACTATACTGAAAACAAATAAATAAATAGACTGCAAGTTGTTTCCTCTCATTTCAAGATATAAACAGCCTCTTTTTCCTTTCATAGTTCAAAACAACTAAAAATGAAAGGAGAGAATTAGATGAAAATTTGAAATAAGTTGGATTTCAGAATGGGTAGTGGTTCTTTATTTAGCCCTGTTAGAGTGGGTTAGTCCTGAATTGGTTGGGTTGGTGGTCTCCTAACACGGACTTGGGCAATTTCTCTTTTTAAGATAACCTTTGGAGTTGAGTGTATCGGAGTCTAGTTCGTCCTGTTTTGGCCCCCATATACTCTTGGCAGTCTGGGTGTGCCGGAGGTATCAGAGTCCGACATTGGTGTGAAAATGAGCTAAGTCTCCTTATATGAACTTTAACAATTCCCCACCCCATCCCCACCCCCGACCTAGTTTTTGTGGTTGAGTTGACGGTAGGACTATATCATGCCTATAATAGTTCCTATTATAGTGCCCACATTCTAGTTGGCAGTCTGGGTGTGTGGGTATTTAAGCGGGGTAGAGTTCCACTTTGGTTGGTAATGATTTGTGATTACTTATAGTTATATAAACTCGGACAGTTCTCTCCTTTCAAGCTAGCTTTTGGGGTTGAGTTATCATAATTCATCCCCAAGCCACTTAATTTTCGATTGTAGATAAGATAGTTTTCGGAAATAAACCTTGTGATGCATGTCCTGCAGTTTCATCAAAGAAAATTAACTCGGATCCGATTAATCTTGCAGTGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTCTTCCCTAAGAGATCTCTCCCTGTTGAGTTTTCAGTTGAACTGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTTTGAAGGCTACTGTCATTATTTTGATTCACTTGTTTCGAAATTCGAGAGTCGAAAATTACAAATTTTTTAATGTTTGAAGTTGATATAGAACATTTC</genome_strand>
        <mrna_strand>GGGGTTAGAGCAGCAATTACTGATGGTTTTGATGAATGCTGATGTGTGCCAAGGGTGGGTTAGAGATAACGAAACGAAAGTAAGGAAAATAGGGCATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTCTTCCCTAAGAGATCTCTCCCTGTTGAGTTTTCAGTTGAACTGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTTTGAAGGCTACTGTCATTATTTTGATTCACTTGTTTCGAAATTCGAGAGTCGAAAATTACAAATTTTTTAATGTTTGAAGTTGATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697153" ref_strand="+" ref_description="SGN-E697153 [LH_Ea10P23](-)">
      <seq>atggaggatgtgatttattcgttggataaagctatacaagatggggcaattccttttgatcagtacttgaggaatgtaaggttgttgttgcgtgaacaattcattcatcgtgccacggcttcaaaggttaaggctgttcagatgcaggctcaagtttctcatatggcttctaggcggtctcaatattctttgtcatagatgttgaattacttggattatgtgtgcaatatggacggaagaggttagtttttttcaagttaaaaaggagacatgtcttggaatttgctgtggagtggaacagttgagacatatgcttgggctcttcaaagataccaattgatgtgtatcggattcggatcctcctcaagctatgtatcttttcgaggatcctccgtgggtagcaacatttttggaaggtccgagcaaagactatttgggtgccatcgtttgattatgatcattttttcttccctaagagaactctccaagttgagttttcagttgaggggagcaaaaacttttgttttttgataggtaactacagtttgaagtaattgctttgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="14373" stop="9101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14073" g_stop="13816" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13815" i_stop="13365" i_length="451">
            <donor d_prob="0.560" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13364" g_stop="13346" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="276" r_length="19" r_score="0.526"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13345" i_stop="9690" i_length="3656">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.698" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9689" g_stop="9401" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="566" r_length="290" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E697153" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14073" e_stop="13816"/>
          <exon e_start="13364" e_stop="13346"/>
          <exon e_start="9689" e_stop="9401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAGGTAGGTTGCTTGTGATTAATATGTCATTGAATTTTGACACTACATAACGGCATAGCTCTGTATGTTCTTCAATGATTGTATCTGTTAGATAGCAAAAGCATTGTGTGATTTGAGAGATTTTCCTGACAATGGGTATCCCCAATATTTTAATTTCTTTACGAGTCTTTGCACGTCTAATTGGCATTTGGACCAATGATAAGCTTATGTCAATATATTCAAAGAGATGAATTGTAACAAATACTAAATATATACTTCTGCTTGAGATGGATATTTGTACCAGTGAGTCCTTTTGTAAGTTATCATATCTTTGTATACTACATAACTTATTGTACTTGCCATGCTTCATTTGCTCCCACTTATAAATTTATCATCAGAAGTTCCAAAACTGATCCATGACCGAGTTTTGAACCGTGCCCTAACTGGCTCTCGGGGCTATCTCAGTTGCCAAAAGTTAAAAAAAGCTCCTAAATGTATCCCTCTTATTAAAGCTGTTTGGAGGTGTGTTCATTTGTTGTCACATTGGCGTGGAACTTCAGTAAGTGAAGCTTAATTGCTTGATTTGATTAAAAAGAGTGAACTTGAAGGTGTATAGAGGGGATAACTTTATAATTGGTCCATTCGGAAGATACAGTTGTTGTGAACACAATCTTTTCCTAATTCACTTTCATTTTCCCATACTAGTTTGTCTAGCTATGCCTCAAAAGGCATTTCAGTTGAGGAGTTCTGTAAGCCATTTATTCTCTCTGAATTGACAAAAACTATTTGGGACTACAACTTCTTAAATGTATTAGAGCTTGAAGTCACATAAGATGCCATTTATGTGAATGATTTCTATAAGTTGAATTAGATGTACATCTTTGGAATTTACCGAATCTCCTACATATTTGTGCCATAAACTTCAGCTAGAGTGGGGAAATTTTAAGCAACTCCTTATAGAATTGTGTTCTTGTGGTATTTACCATAGTATGAACTAGACATATACATTTTACATTGAGAGTGAAGAGAAAATCAATAAATTCTCATTGACTTTGTTTAAGTATCAATGGACAAAAATGTCTGTAAATTAGTTTATTTCTAGTCATTCATTTGAAGAAATTACTCGAGACTGTTGCTTGTCCTAAACTATACCTTCTTGGAGGGGTGGGTGCGTTACTCCTAGTGTTGTCAAAGGTGCGCTTAAGCCCTAAATCGAGTTGCAAAACATATTGAGTGTTTCGTCTCGCTTAGTGTGCACTTTAATGTTGTCATCAAGGCTCTAAGACTTAACTTTCCTGGCTAATGAGCCTTTTATCTTTTTTTATTTTTTTATGAAGATAGATTTTGTATAGCTGGCATCAAGAAGATGCAAAGTTACAAAAGATACGTTAGTTCTTACAACAACAGACCTTGAAGCATAGGGAGCTAATAAAAAACAAAAGAGGGCTCAGATAAATGGAGGACTGAAAACTAACAGCAATTGACTTACTAACAAATACAAGACTTGACCATATTAAAAGACTGATAGCTGGTAAGTTTCCTCCAAACACAACTCCAATACCACCTCCATGATAATTATTAATTAAGAAGTCTCCTCCTCTTCTGGTTTAGGGATACATTTACTTTTTTTCCCTTTTTAACTTTGTCCAACCACGACTAGATTGCCATGAACTGGTCCAACGTAAGTTTGACTGACAGTATATTTGAGTGCCTCAAAGACATTTGATTTGCCTACATCAGTATGATCATGTTAGAGATCGTCTAGTATCTATTCAAGAAATATATTCTATACTTGTGGAGCCATAGGAATATGATTTTTCACTTGGTGAAAAGAGTAAAACACCCACATCTGCTCCGGTCAGAGTTGAATAGTATTTGCTTTCTTGATCAAGCCTTTTTTCCTTACGAGAAAGTAACAGTGCGTGCTTCCTTTGACTCAATCAATTTCATATTAATCTTTTGCCTACCCTTCCCAATCCTCTGTATCCATTGCAAAAAAAATAAAATAATTAAAGAAGAAAATAAGATGTTTTGGCTGAATAAACCTGAGCAAGTCTATTTGTCACACGTATTGTTGTTTTCACATTATGAGTCTATTTGCCATGTGTATTGTCACGTTTATTTAGTGTTCTAATATTATGTGAATCTATGATGCGATTACCATGAATCCCAACAAAAATTTTCTTCTTATTTATTCTGCTACAATTGCTAAGTAATAATGTTGGATTGTATCTAAAGATAAATGAAAATTAAATTGTTAAGTTTGTTGATTGTTTTTATGAGTCTATTTGTGACGTGTATTCACGTTTATTTGGTGTTTTCATATTATGTGAATCTATTACGGGATGGTGATAAAACCAAAACTTTGTCGAAATCCCTTCAAAACATCTTCTATTCCTTTCTATCCAAACACACCGAAAAATACAGCTAGGGATCATTTTCCAGATGTTCTTGGTACTTTGTTTTATCTCCAAGAATTCAGGTTTTCAACTCCTACCCTTATAGTCAAAGGTAGTGTCCATGAGAGGTCAAAAACTGATATTTCCCTTTTTTCACAAAAAAAAATTCTAATTTCTTTGTCCATATATTGTTATTCATGCTTATAATTATTTGTCTTGGATTACCCATACATATTTGTATTTTGTTCTTCATTTGCACGCTTCTTTATTAAAGTCAACACTTCATTCGCACTTAAAACTATAGTGGACCTTAGAGATTTTTTTTGCATTTTTTCGAGTTTGATAAGACTGATTCTCCCTTGGTAATAGTGTTTGATTTGGCATGAGGCTCAATATAATTGTTGTCTATAATATATATATCATCTATGGCAAAGGAAGAAGGTAGTAATATCTAAAAGTTAGTTTAGCAAAAAAAAAGCCCATCGTAGTGACTTTCGAATTTGTTCTACTCGTGTGAATTTGAAACCTTGAAACTTTTGTTACCTTTTTTGATAAGGTAATTTTGAAGTCTTGAAAGTTGTGGAGGTTGTATACAATTATATTATTAGTAGGATGGTGTGGTATATTTTGGAAATGTATTTTAACAAGGCATATTTGGGATGACTTGAAATGAAAAGAACGTCATATAAATTAGGAGGAAGGAAGAGTATGATAACCTGCAGAGATTTTGATACTTAACAAAAGGTAAAGCATCGAACACTCTTGTTAGGTCCTTCAGTTAATAGGGATTGTTGGGTTGGTGGTTAATAACGTTTGACCTCATTTAAGACCTCAATTTTTTTTATTGATACTGTGGTGTCTAGGTTATTTTTCGTGCACCTAGACTATTTTCACAGGATATAGATGCTGATAACTTTGTCCAAAGCTTGGACAAGTTGGAAGAAATCACCTCGTATTTTTGCCTTTGCTGGGATTAGTACCTTAGACCTCATTGATCACTATACTGAAAACAAATAAATAAATAGACTGCAAGTTGTTTCCTCTCATTTCAAGATATAAACAGCCTCTTTTTCCTTTCATAGTTCAAAACAACTAAAAATGAAAGGAGAGAATTAGATGAAAATTTGAAATAAGTTGGATTTCAGAATGGGTAGTGGTTCTTTATTTAGCCCTGTTAGAGTGGGTTAGTCCTGAATTGGTTGGGTTGGTGGTCTCCTAACACGGACTTGGGCAATTTCTCTTTTTAAGATAACCTTTGGAGTTGAGTGTATCGGAGTCTAGTTCGTCCTGTTTTGGCCCCCATATACTCTTGGCAGTCTGGGTGTGCCGGAGGTATCAGAGTCCGACATTGGTGTGAAAATGAGCTAAGTCTCCTTATATGAACTTTAACAATTCCCCACCCCATCCCCACCCCCGACCTAGTTTTTGTGGTTGAGTTGACGGTAGGACTATATCATGCCTATAATAGTTCCTATTATAGTGCCCACATTCTAGTTGGCAGTCTGGGTGTGTGGGTATTTAAGCGGGGTAGAGTTCCACTTTGGTTGGTAATGATTTGTGATTACTTATAGTTATATAAACTCGGACAGTTCTCTCCTTTCAAGCTAGCTTTTGGGGTTGAGTTATCATAATTCATCCCCAAGCCACTTAATTTTCGATTGTAGATAAGATAGTTTTCGGAAATAAACCTTGTGATGCATGTCCTGCAGTTTCATCAAAGAAAATTAACTCGGATCCGATTAATCTTGCAGTGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGA-CCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTCTTCCCTAAGAGATCTCTCCCTGTTGAGTTTTCAGTTGAACTGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTTTGAAGG</genome_strand>
        <mrna_strand>ATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTTGCGTGAACAATTCATTCATCGTGCCACGGCTTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCGGTCTCAATATTCTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCAATATGGACGGAAGAGGTTAG-TTTTTTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAGGAGACATGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGCTGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAATTGATGTGTATCGGATTCGGATCCTCCTCAAGCTATGTATCTTTTCGAGGATCCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCCATCGTTTGATTATGATCATTTTTTCTTCCCTAAGAGAACTCTCCAAGTTGAGTTTTCAGTTGAGGGGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTTTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544977" ref_strand="+" ref_description="SGN-E544977 [TUS-67-J11](-)">
      <seq>atggttttgatgaatgctgatgtgttgaaggggtgggttagagataacgaaacgaaagttaagaaaatagggaatgtggatgtggacgaggcgtttgagctttgtgatagactttcgaaacagatgttggattgtacagcctcggatttagctatggaggatgtgatttattcgttggataaagctatacaagatggggcaattccttttgatcagtacttgaggaatgtaaggttgttgtcgcgtgaacaattcattcatcgtgccacggcgtcaaaggttaaggctgttcagatgcaggctcaagtttctcatatggcttctaggctgtctcaatatactttgtcatagatgttgaattacttggattatgtgtgcactatggacggaagaggttagttttttttcaagtggaatttgatgtggagtggaacagttgagacatatgcttgggctcttcaaagataccaactgatgtgtatcggattcgaatcctccacaagctatgtatcttttcgaggacctccgtgggtagcaacatttttggaaggtccgagcaaagactatttgggtgctatcgtttgataatgatcattttttcttccctaagagatctctccctgttgagttttcagttgaactgagcaaaaacttttgttttttgataggtaactacagtttgaagtaattgcttgaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="14526" stop="9103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14226" g_stop="13816" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13815" i_stop="9690" i_length="4126">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9689" g_stop="9407" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="694" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="710"/>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E544977" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14226" e_stop="13816"/>
          <exon e_start="9689" e_stop="9407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTTGATGAATGCTGATGTGTTGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAGGTAGGTTGCTTGTGATTAATATGTCATTGAATTTTGACACTACATAACGGCATAGCTCTGTATGTTCTTCAATGATTGTATCTGTTAGATAGCAAAAGCATTGTGTGATTTGAGAGATTTTCCTGACAATGGGTATCCCCAATATTTTAATTTCTTTACGAGTCTTTGCACGTCTAATTGGCATTTGGACCAATGATAAGCTTATGTCAATATATTCAAAGAGATGAATTGTAACAAATACTAAATATATACTTCTGCTTGAGATGGATATTTGTACCAGTGAGTCCTTTTGTAAGTTATCATATCTTTGTATACTACATAACTTATTGTACTTGCCATGCTTCATTTGCTCCCACTTATAAATTTATCATCAGAAGTTCCAAAACTGATCCATGACCGAGTTTTGAACCGTGCCCTAACTGGCTCTCGGGGCTATCTCAGTTGCCAAAAGTTAAAAAAAGCTCCTAAATGTATCCCTCTTATTAAAGCTGTTTGGAGGTGTGTTCATTTGTTGTCACATTGGCGTGGAACTTCAGTAAGTGAAGCTTAATTGCTTGATTTGATTAAAAAGAGTGAACTTGAAGGTGTATAGAGGGGATAACTTTATAATTGGTCCATTCGGAAGATACAGTTGTTGTGAACACAATCTTTTCCTAATTCACTTTCATTTTCCCATACTAGTTTGTCTAGCTATGCCTCAAAAGGCATTTCAGTTGAGGAGTTCTGTAAGCCATTTATTCTCTCTGAATTGACAAAAACTATTTGGGACTACAACTTCTTAAATGTATTAGAGCTTGAAGTCACATAAGATGCCATTTATGTGAATGATTTCTATAAGTTGAATTAGATGTACATCTTTGGAATTTACCGAATCTCCTACATATTTGTGCCATAAACTTCAGCTAGAGTGGGGAAATTTTAAGCAACTCCTTATAGAATTGTGTTCTTGTGGTATTTACCATAGTATGAACTAGACATATACATTTTACATTGAGAGTGAAGAGAAAATCAATAAATTCTCATTGACTTTGTTTAAGTATCAATGGACAAAAATGTCTGTAAATTAGTTTATTTCTAGTCATTCATTTGAAGAAATTACTCGAGACTGTTGCTTGTCCTAAACTATACCTTCTTGGAGGGGTGGGTGCGTTACTCCTAGTGTTGTCAAAGGTGCGCTTAAGCCCTAAATCGAGTTGCAAAACATATTGAGTGTTTCGTCTCGCTTAGTGTGCACTTTAATGTTGTCATCAAGGCTCTAAGACTTAACTTTCCTGGCTAATGAGCCTTTTATCTTTTTTTATTTTTTTATGAAGATAGATTTTGTATAGCTGGCATCAAGAAGATGCAAAGTTACAAAAGATACGTTAGTTCTTACAACAACAGACCTTGAAGCATAGGGAGCTAATAAAAAACAAAAGAGGGCTCAGATAAATGGAGGACTGAAAACTAACAGCAATTGACTTACTAACAAATACAAGACTTGACCATATTAAAAGACTGATAGCTGGTAAGTTTCCTCCAAACACAACTCCAATACCACCTCCATGATAATTATTAATTAAGAAGTCTCCTCCTCTTCTGGTTTAGGGATACATTTACTTTTTTTCCCTTTTTAACTTTGTCCAACCACGACTAGATTGCCATGAACTGGTCCAACGTAAGTTTGACTGACAGTATATTTGAGTGCCTCAAAGACATTTGATTTGCCTACATCAGTATGATCATGTTAGAGATCGTCTAGTATCTATTCAAGAAATATATTCTATACTTGTGGAGCCATAGGAATATGATTTTTCACTTGGTGAAAAGAGTAAAACACCCACATCTGCTCCGGTCAGAGTTGAATAGTATTTGCTTTCTTGATCAAGCCTTTTTTCCTTACGAGAAAGTAACAGTGCGTGCTTCCTTTGACTCAATCAATTTCATATTAATCTTTTGCCTACCCTTCCCAATCCTCTGTATCCATTGCAAAAAAAATAAAATAATTAAAGAAGAAAATAAGATGTTTTGGCTGAATAAACCTGAGCAAGTCTATTTGTCACACGTATTGTTGTTTTCACATTATGAGTCTATTTGCCATGTGTATTGTCACGTTTATTTAGTGTTCTAATATTATGTGAATCTATGATGCGATTACCATGAATCCCAACAAAAATTTTCTTCTTATTTATTCTGCTACAATTGCTAAGTAATAATGTTGGATTGTATCTAAAGATAAATGAAAATTAAATTGTTAAGTTTGTTGATTGTTTTTATGAGTCTATTTGTGACGTGTATTCACGTTTATTTGGTGTTTTCATATTATGTGAATCTATTACGGGATGGTGATAAAACCAAAACTTTGTCGAAATCCCTTCAAAACATCTTCTATTCCTTTCTATCCAAACACACCGAAAAATACAGCTAGGGATCATTTTCCAGATGTTCTTGGTACTTTGTTTTATCTCCAAGAATTCAGGTTTTCAACTCCTACCCTTATAGTCAAAGGTAGTGTCCATGAGAGGTCAAAAACTGATATTTCCCTTTTTTCACAAAAAAAAATTCTAATTTCTTTGTCCATATATTGTTATTCATGCTTATAATTATTTGTCTTGGATTACCCATACATATTTGTATTTTGTTCTTCATTTGCACGCTTCTTTATTAAAGTCAACACTTCATTCGCACTTAAAACTATAGTGGACCTTAGAGATTTTTTTTGCATTTTTTCGAGTTTGATAAGACTGATTCTCCCTTGGTAATAGTGTTTGATTTGGCATGAGGCTCAATATAATTGTTGTCTATAATATATATATCATCTATGGCAAAGGAAGAAGGTAGTAATATCTAAAAGTTAGTTTAGCAAAAAAAAAGCCCATCGTAGTGACTTTCGAATTTGTTCTACTCGTGTGAATTTGAAACCTTGAAACTTTTGTTACCTTTTTTGATAAGGTAATTTTGAAGTCTTGAAAGTTGTGGAGGTTGTATACAATTATATTATTAGTAGGATGGTGTGGTATATTTTGGAAATGTATTTTAACAAGGCATATTTGGGATGACTTGAAATGAAAAGAACGTCATATAAATTAGGAGGAAGGAAGAGTATGATAACCTGCAGAGATTTTGATACTTAACAAAAGGTAAAGCATCGAACACTCTTGTTAGGTCCTTCAGTTAATAGGGATTGTTGGGTTGGTGGTTAATAACGTTTGACCTCATTTAAGACCTCAATTTTTTTTATTGATACTGTGGTGTCTAGGTTATTTTTCGTGCACCTAGACTATTTTCACAGGATATAGATGCTGATAACTTTGTCCAAAGCTTGGACAAGTTGGAAGAAATCACCTCGTATTTTTGCCTTTGCTGGGATTAGTACCTTAGACCTCATTGATCACTATACTGAAAACAAATAAATAAATAGACTGCAAGTTGTTTCCTCTCATTTCAAGATATAAACAGCCTCTTTTTCCTTTCATAGTTCAAAACAACTAAAAATGAAAGGAGAGAATTAGATGAAAATTTGAAATAAGTTGGATTTCAGAATGGGTAGTGGTTCTTTATTTAGCCCTGTTAGAGTGGGTTAGTCCTGAATTGGTTGGGTTGGTGGTCTCCTAACACGGACTTGGGCAATTTCTCTTTTTAAGATAACCTTTGGAGTTGAGTGTATCGGAGTCTAGTTCGTCCTGTTTTGGCCCCCATATACTCTTGGCAGTCTGGGTGTGCCGGAGGTATCAGAGTCCGACATTGGTGTGAAAATGAGCTAAGTCTCCTTATATGAACTTTAACAATTCCCCACCCCATCCCCACCCCCGACCTAGTTTTTGTGGTTGAGTTGACGGTAGGACTATATCATGCCTATAATAGTTCCTATTATAGTGCCCACATTCTAGTTGGCAGTCTGGGTGTGTGGGTATTTAAGCGGGGTAGAGTTCCACTTTGGTTGGTAATGATTTGTGATTACTTATAGTTATATAAACTCGGACAGTTCTCTCCTTTCAAGCTAGCTTTTGGGGTTGAGTTATCATAATTCATCCCCAAGCCACTTAATTTTCGATTGTAGATAAGATAGTTTTCGGAAATAAACCTTGTGATGCATGTCCTGCAGTTTCATCAAAGAAAATTAACTCGGATCCGATTAATCTTGCAGTGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTCTTCCCTAAGAGATCTCTCCCTGTTGAGTTTTCAGTTGAACTGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTT</genome_strand>
        <mrna_strand>ATGGTTTTGATGAATGCTGATGTGTTGAAGGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTCTTCCCTAAGAGATCTCTCCCTGTTGAGTTTTCAGTTGAACTGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544978" ref_strand="+" ref_description="SGN-E544978 [TUS-67-J11]">
      <seq>atggttttgatgaatgctgatgtgttggaagggtgggttagagataacgaaacgaaagttaagaaaatagggaatgtggatgtggacgaggcgtttgagctttgtgatagactttcgaaacagatgttggattgtacagcctcggatttagctatggaggatgtgatttattcgttggataaagctatacaagatggggcaattccttttgatcagtacttgaggaatgtaaggttgttgtcgcgtgaacaattcattcatcgtgccacggcgtcaaaggttaaggctgttcagatgcaggctcaagtttctcatatggcttctaggctgtctcaatatactttgtcatagatgttgaattacttggattatgtgtgcactatggacggaagaggttagttttttttcaagtggaatttgatgtggagtggaacagttgagacatatgcttgggctcttcaaagataccaactgatgtgtatcggattcgaatcctccacaagctatgtatcttttcgaggacctccgtgggtagcaacatttttggaaggtccgagcaaagactatttgggtgctatcgtttgataatgatcatttttttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="14526" stop="9197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14226" g_stop="13816" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13815" i_stop="9690" i_length="4126">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9689" g_stop="9497" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="605" r_length="194" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E544978" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14226" e_stop="13816"/>
          <exon e_start="9689" e_stop="9497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTTGATGAATGCTGATGTGTTGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAGGTAGGTTGCTTGTGATTAATATGTCATTGAATTTTGACACTACATAACGGCATAGCTCTGTATGTTCTTCAATGATTGTATCTGTTAGATAGCAAAAGCATTGTGTGATTTGAGAGATTTTCCTGACAATGGGTATCCCCAATATTTTAATTTCTTTACGAGTCTTTGCACGTCTAATTGGCATTTGGACCAATGATAAGCTTATGTCAATATATTCAAAGAGATGAATTGTAACAAATACTAAATATATACTTCTGCTTGAGATGGATATTTGTACCAGTGAGTCCTTTTGTAAGTTATCATATCTTTGTATACTACATAACTTATTGTACTTGCCATGCTTCATTTGCTCCCACTTATAAATTTATCATCAGAAGTTCCAAAACTGATCCATGACCGAGTTTTGAACCGTGCCCTAACTGGCTCTCGGGGCTATCTCAGTTGCCAAAAGTTAAAAAAAGCTCCTAAATGTATCCCTCTTATTAAAGCTGTTTGGAGGTGTGTTCATTTGTTGTCACATTGGCGTGGAACTTCAGTAAGTGAAGCTTAATTGCTTGATTTGATTAAAAAGAGTGAACTTGAAGGTGTATAGAGGGGATAACTTTATAATTGGTCCATTCGGAAGATACAGTTGTTGTGAACACAATCTTTTCCTAATTCACTTTCATTTTCCCATACTAGTTTGTCTAGCTATGCCTCAAAAGGCATTTCAGTTGAGGAGTTCTGTAAGCCATTTATTCTCTCTGAATTGACAAAAACTATTTGGGACTACAACTTCTTAAATGTATTAGAGCTTGAAGTCACATAAGATGCCATTTATGTGAATGATTTCTATAAGTTGAATTAGATGTACATCTTTGGAATTTACCGAATCTCCTACATATTTGTGCCATAAACTTCAGCTAGAGTGGGGAAATTTTAAGCAACTCCTTATAGAATTGTGTTCTTGTGGTATTTACCATAGTATGAACTAGACATATACATTTTACATTGAGAGTGAAGAGAAAATCAATAAATTCTCATTGACTTTGTTTAAGTATCAATGGACAAAAATGTCTGTAAATTAGTTTATTTCTAGTCATTCATTTGAAGAAATTACTCGAGACTGTTGCTTGTCCTAAACTATACCTTCTTGGAGGGGTGGGTGCGTTACTCCTAGTGTTGTCAAAGGTGCGCTTAAGCCCTAAATCGAGTTGCAAAACATATTGAGTGTTTCGTCTCGCTTAGTGTGCACTTTAATGTTGTCATCAAGGCTCTAAGACTTAACTTTCCTGGCTAATGAGCCTTTTATCTTTTTTTATTTTTTTATGAAGATAGATTTTGTATAGCTGGCATCAAGAAGATGCAAAGTTACAAAAGATACGTTAGTTCTTACAACAACAGACCTTGAAGCATAGGGAGCTAATAAAAAACAAAAGAGGGCTCAGATAAATGGAGGACTGAAAACTAACAGCAATTGACTTACTAACAAATACAAGACTTGACCATATTAAAAGACTGATAGCTGGTAAGTTTCCTCCAAACACAACTCCAATACCACCTCCATGATAATTATTAATTAAGAAGTCTCCTCCTCTTCTGGTTTAGGGATACATTTACTTTTTTTCCCTTTTTAACTTTGTCCAACCACGACTAGATTGCCATGAACTGGTCCAACGTAAGTTTGACTGACAGTATATTTGAGTGCCTCAAAGACATTTGATTTGCCTACATCAGTATGATCATGTTAGAGATCGTCTAGTATCTATTCAAGAAATATATTCTATACTTGTGGAGCCATAGGAATATGATTTTTCACTTGGTGAAAAGAGTAAAACACCCACATCTGCTCCGGTCAGAGTTGAATAGTATTTGCTTTCTTGATCAAGCCTTTTTTCCTTACGAGAAAGTAACAGTGCGTGCTTCCTTTGACTCAATCAATTTCATATTAATCTTTTGCCTACCCTTCCCAATCCTCTGTATCCATTGCAAAAAAAATAAAATAATTAAAGAAGAAAATAAGATGTTTTGGCTGAATAAACCTGAGCAAGTCTATTTGTCACACGTATTGTTGTTTTCACATTATGAGTCTATTTGCCATGTGTATTGTCACGTTTATTTAGTGTTCTAATATTATGTGAATCTATGATGCGATTACCATGAATCCCAACAAAAATTTTCTTCTTATTTATTCTGCTACAATTGCTAAGTAATAATGTTGGATTGTATCTAAAGATAAATGAAAATTAAATTGTTAAGTTTGTTGATTGTTTTTATGAGTCTATTTGTGACGTGTATTCACGTTTATTTGGTGTTTTCATATTATGTGAATCTATTACGGGATGGTGATAAAACCAAAACTTTGTCGAAATCCCTTCAAAACATCTTCTATTCCTTTCTATCCAAACACACCGAAAAATACAGCTAGGGATCATTTTCCAGATGTTCTTGGTACTTTGTTTTATCTCCAAGAATTCAGGTTTTCAACTCCTACCCTTATAGTCAAAGGTAGTGTCCATGAGAGGTCAAAAACTGATATTTCCCTTTTTTCACAAAAAAAAATTCTAATTTCTTTGTCCATATATTGTTATTCATGCTTATAATTATTTGTCTTGGATTACCCATACATATTTGTATTTTGTTCTTCATTTGCACGCTTCTTTATTAAAGTCAACACTTCATTCGCACTTAAAACTATAGTGGACCTTAGAGATTTTTTTTGCATTTTTTCGAGTTTGATAAGACTGATTCTCCCTTGGTAATAGTGTTTGATTTGGCATGAGGCTCAATATAATTGTTGTCTATAATATATATATCATCTATGGCAAAGGAAGAAGGTAGTAATATCTAAAAGTTAGTTTAGCAAAAAAAAAGCCCATCGTAGTGACTTTCGAATTTGTTCTACTCGTGTGAATTTGAAACCTTGAAACTTTTGTTACCTTTTTTGATAAGGTAATTTTGAAGTCTTGAAAGTTGTGGAGGTTGTATACAATTATATTATTAGTAGGATGGTGTGGTATATTTTGGAAATGTATTTTAACAAGGCATATTTGGGATGACTTGAAATGAAAAGAACGTCATATAAATTAGGAGGAAGGAAGAGTATGATAACCTGCAGAGATTTTGATACTTAACAAAAGGTAAAGCATCGAACACTCTTGTTAGGTCCTTCAGTTAATAGGGATTGTTGGGTTGGTGGTTAATAACGTTTGACCTCATTTAAGACCTCAATTTTTTTTATTGATACTGTGGTGTCTAGGTTATTTTTCGTGCACCTAGACTATTTTCACAGGATATAGATGCTGATAACTTTGTCCAAAGCTTGGACAAGTTGGAAGAAATCACCTCGTATTTTTGCCTTTGCTGGGATTAGTACCTTAGACCTCATTGATCACTATACTGAAAACAAATAAATAAATAGACTGCAAGTTGTTTCCTCTCATTTCAAGATATAAACAGCCTCTTTTTCCTTTCATAGTTCAAAACAACTAAAAATGAAAGGAGAGAATTAGATGAAAATTTGAAATAAGTTGGATTTCAGAATGGGTAGTGGTTCTTTATTTAGCCCTGTTAGAGTGGGTTAGTCCTGAATTGGTTGGGTTGGTGGTCTCCTAACACGGACTTGGGCAATTTCTCTTTTTAAGATAACCTTTGGAGTTGAGTGTATCGGAGTCTAGTTCGTCCTGTTTTGGCCCCCATATACTCTTGGCAGTCTGGGTGTGCCGGAGGTATCAGAGTCCGACATTGGTGTGAAAATGAGCTAAGTCTCCTTATATGAACTTTAACAATTCCCCACCCCATCCCCACCCCCGACCTAGTTTTTGTGGTTGAGTTGACGGTAGGACTATATCATGCCTATAATAGTTCCTATTATAGTGCCCACATTCTAGTTGGCAGTCTGGGTGTGTGGGTATTTAAGCGGGGTAGAGTTCCACTTTGGTTGGTAATGATTTGTGATTACTTATAGTTATATAAACTCGGACAGTTCTCTCCTTTCAAGCTAGCTTTTGGGGTTGAGTTATCATAATTCATCCCCAAGCCACTTAATTTTCGATTGTAGATAAGATAGTTTTCGGAAATAAACCTTGTGATGCATGTCCTGCAGTTTCATCAAAGAAAATTAACTCGGATCCGATTAATCTTGCAGTGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCA-TTTTTTCTTC</genome_strand>
        <mrna_strand>ATGGTTTTGATGAATGCTGATGTGTTGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308909" ref_strand="+" ref_description="SGN-E308909 [cLEY-23-F10]">
      <seq>tggttttgatgaatgctgatgtgtcggaagggtgggttagagataacgaaacgaaagttaagaaaatagggaatgtggatgtggacgaggcgtcagagctttgtgatagactttcgaaacagatgttggattgtacagcctcggatttagctatggaggatgtgatttattcgttggataaagctatacaagatggggcatttccttttgatcagtacttgaggaatgtaaggttgttgtcgcgtgaacaattcattcatcgtgccacggcgtcaaaggttaaggctgttcaaatgcaggctcaagttgctcatatggcttctaggctgtctcaatatactgtgtcatacatgttgaattacttggattatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="14525" stop="13550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14225" g_stop="13850" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E308909" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14225" e_stop="13850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGATGAATGCTGATGTGTTGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTG</genome_strand>
        <mrna_strand>TGGTTTTGATGAATGCTGATGTGTCGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTCAGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCATTTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAAATGCAGGCTCAAGTTGCTCATATGGCTTCTAGGCTGTCTCAATATACTGTGTCATACATGTTGAATTACTTGGATTATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693313" ref_strand="+" ref_description="SGN-E693313 [LH_Ea10P23]">
      <seq>ctttttctttccgatcgccggagcttaccgaaaccgacgccgctttctcctccgatcacaatgacaccaccacctccggaggcggcgattcattctccgtcatctccccaatacaccccaaaaaacttaagcaacgttttctcccaacgaggtccttcttctctcccttactccgaagacgtaaaatggctaatccgtcaacacctcgtttcgctgatcgatacgtgtccttctcttcaacctagaaccgctactttcacttacaacgacggcagaactgtgaatctccttcaggcgaacggcacagttccgatggtctatctagatgcaacctacaacattccggtcattatttggttactggattcttaccctcgtcaatcgccgttggtattcgtgaacccgacgcgtaatatggtcatcaaagactcacatccatttgtgaactcttctggtattgtttcaatcccttatttaacaaattgggtatatccaagttcgaatcttgttgaattagctcgtaatttgagtcatttttttagccgcgatccccctttgtacaccaaacggaacccgaatccgagcccaaacccgcatcctcctccgggtactagtttttcgaatagtgggtcgactcgtcctgcgataccacctcgggtgtatccaccatcaccttatgggagtgggagtggtggggtagtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15443" stop="14146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15136" g_stop="14446" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="705" r_length="691" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E693313" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15136" e_stop="14446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACCTTATGGGAGTGGGAGTGGTGGGGTAGTGGGG</genome_strand>
        <mrna_strand>TCGCCGGAGCTTACCGAAACCGACGCCGCTTTCTCCTCCGATCACAATGACACCACCACCTCCGGAGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACCCCAAAAAACTTAAGCAACGTTTTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGCTGATCGATACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGATTCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCGACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAACAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGCGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACCTTATGGGAGTGGGAGTGGTGGGGTAGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431173" ref_strand="+" ref_description="SGN-E431173 [STM-55-C17]">
      <seq>ctctgagctaaaacaaattccccgtcgttctcctttttctttccgatcgccggagtttaccaaatccgacgccgttttctcctccgatcacaatggcaccaccacctccggaggcggcgattcactctccttcatctccccaatacactcaacaattcttaagcaacgttctctcccaacgaggtccttcttctctcccttactccgaagacgtcaaatggttgatccgtcaacacctcgtttcgttaatcgacatgtgtccttctcttcaacccagaaccgctactttcacttacaacgacggcaggactgtgaatctccttcaggcgaacggcaccgttccgatggtctatctagatgcaacctacaatattccggtcattatttggttactggaatcttaccctcgtcaatcaccgttggtattcgtgaaccccacgcgtcatatggtcgtcaaagactcacatccatttgtgaactcttctggtattgtttcgatcccttatttgacaaattgggtatacccaagttcgaatcttgttgaattagttcgtaatttgagtaatttttttagccgtgatccccctttgtacaccaaacgaaacccgaacccgaatccgcatcctcctccgggtactagcttttcgaatagtggatcgactcgacccgcaataccacctcgggtgtatccaccatcaccttatggaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15443" stop="14165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15136" g_stop="14465" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="712" r_length="666" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E431173" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15136" e_stop="14465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACCTTATGGGAGTGG</genome_strand>
        <mrna_strand>TCGCCGGAGTTTACCAAATCCGACGCCGTTTTCTCCTCCGATCACAATGGCACCACCACCTCCGGAGGCGGCGATTCACTCTCCTTCATCTCCCCAATACACTCAACAATTCTTAAGCAACGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTCAAATGGTTGATCCGTCAACACCTCGTTTCGTTAATCGACATGTGTCCTTCTCTTCAACCCAGAACCGCTACTTTCACTTACAACGACGGCAGGACTGTGAATCTCCTTCAGGCGAACGGCACCGTTCCGATGGTCTATCTAGATGCAACCTACAATATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCACCGTTGGTATTCGTGAACCCCACGCGTCATATGGTCGTCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCGATCCCTTATTTGACAAATTGGGTATACCCAAGTTCGAATCTTGTTGAATTAGTTCGTAATTTGAGTAATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGAAACCCG-A----A-CCCGAATCCGCATCCTCCTCCGGGTACTAGCTTTTCGAATAGTGGATCGACTCGACCCGCAATACCACCTCGGGTGTATCCACCATCACCTTATGGAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410198" ref_strand="+" ref_description="SGN-E410198 [PPI-16-G14]">
      <seq>ctcctccgatcacaatggtaccaccacctccggaggcggcgattcactctccttcatctccccaatacactcaacaattcttaagcaacgttctctcccaacgaggtccttcttctctcccttactccgaagacgtcaaatggctgatccgtcaacacctcggttcgttaatcgacatgtgtccttctcttcaacccagaaccgctactttcacttacaacgacggcaggactgtgaatctccttcaagcgaacggcaccgttccgatggtctatctagatgcaacctacaatattccggtcattatttggttactggaatcttaccctcgtcaatcaccgttggtattcgtgaaccccacgcgtcatatggtcgtcaaagactcacatccatttgtgaactcttctggtattgtttcgatcccttatttgacaaattgggtatacccaagttcgaatcttgttgaattagttcgtaatttgagtaatttttttagccgtgatccccctttgtacaccaaacgaaacccgaacccgaatccgcatcctcctccgggtactagcttttcgaatagtggatcgactcgacccgcaataccacctcgggtgtatccaccatcaccttatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15404" stop="14169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15104" g_stop="14469" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E410198" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15104" e_stop="14469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACCTTATGGGA</genome_strand>
        <mrna_strand>CTCCTCCGATCACAATGGTACCACCACCTCCGGAGGCGGCGATTCACTCTCCTTCATCTCCCCAATACACTCAACAATTCTTAAGCAACGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTCAAATGGCTGATCCGTCAACACCTCGGTTCGTTAATCGACATGTGTCCTTCTCTTCAACCCAGAACCGCTACTTTCACTTACAACGACGGCAGGACTGTGAATCTCCTTCAAGCGAACGGCACCGTTCCGATGGTCTATCTAGATGCAACCTACAATATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCACCGTTGGTATTCGTGAACCCCACGCGTCATATGGTCGTCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCGATCCCTTATTTGACAAATTGGGTATACCCAAGTTCGAATCTTGTTGAATTAGTTCGTAATTTGAGTAATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGAAACCCG-A----A-CCCGAATCCGCATCCTCCTCCGGGTACTAGCTTTTCGAATAGTGGATCGACTCGACCCGCAATACCACCTCGGGTGTATCCACCATCACCTTATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585893" ref_strand="+" ref_description="SGN-E585893 [68358]">
      <seq>aactagtggatcccccggcctgcagtgataaaacaaattccccgtcgttctcctttttctttccgatcgccggagtttaccaaatccgacgccgttttctcctccgatcacaatggcaccaccacctccggaggcggcgattcactctccttcatctccccaatacactcaacaattcttaagcaacgttctctcccaacgaggtccttcttctctcccttactccgaagacgtcaaatggttgatccgtcaacacctcgtttcgttaatcgacatgtgtccttctcttcaacccagaaccgctactttcacttacaacgacggcaggactgtgaatctccttcaggcgaacggcaccgttccgatggtctatctagatgcaacctacaatattccggtcattatttggttactggaatcttaccctcgtcaatcaccgttgggtattcgtgaaccccacgcgtcatatggtcgtcaaagactcacatccatttgtgaactcttctggtattgtttcgatcccttatttgacaaattgggtatacccaagttcgaatcttgttgaattagttcgtaattttgagtaattttttagccgtgatccccctttgtacaccaagagaaaaccgaacccgaatccgcatcctcctccgggtactagcttttcgaatagtggatcgactcgacccgcaataccacctcgggtgtatccaccatcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15443" stop="14175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15136" g_stop="14475" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="723" r_length="657" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E585893" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15136" e_stop="14475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTT-GGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAA-TTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACCTT</genome_strand>
        <mrna_strand>TCGCCGGAGTTTACCAAATCCGACGCCGTTTTCTCCTCCGATCACAATGGCACCACCACCTCCGGAGGCGGCGATTCACTCTCCTTCATCTCCCCAATACACTCAACAATTCTTAAGCAACGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTCAAATGGTTGATCCGTCAACACCTCGTTTCGTTAATCGACATGTGTCCTTCTCTTCAACCCAGAACCGCTACTTTCACTTACAACGACGGCAGGACTGTGAATCTCCTTCAGGCGAACGGCACCGTTCCGATGGTCTATCTAGATGCAACCTACAATATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCACCGTTGGGTATTCGTGAACCCCACGCGTCATATGGTCGTCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCGATCCCTTATTTGACAAATTGGGTATACCCAAGTTCGAATCTTGTTGAATTAGTTCGTAATTTTGAGT-AATTTTTTAGCCGTGATCCCCCTTTGTACACC-AAGAGAA----AA-CCGAACCCGAATCCGCATCCTCCTCCGGGTACTAGCTTTTCGAATAGTGGATCGACTCGACCCGCAATACCACCTCGGGTGTATCCACCATCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544265" ref_strand="+" ref_description="SGN-E544265 [TUS-66-I4]">
      <seq>aaaaaatcgaacccttaaaatcaacttcaaattcgccggagcttaccaaatccgacggcgttttctcctctgatcacaatgacaccaccaacgccggcggcggcgattcattctccgtcatctccccaatacactcaacaattcttaagcaatgttctctcccaacgaggtccttcttctctcccttactccgaagacgtaaaatggctaatccgtcaacacctcgtttcgttgatcgacacgtgtccttctcttcaacctagaaccgctactttcacttacaacgacggcagaactgtgaatctccttcaggcgaacggcacagttccgatggtctatctagatgcaacctacaacattccggtcattatttggttactggaatcttaccctcgtcaatcgccgttggtattcgtgaacccaacgcgtaatatggtcatcaaagactcacatccatttgtgaactcttctggtattgtttcaatcccttatttaaaaaattgggtatatccaagttcgaatcttgttgaattagctcgtaatttgagtcatttttttagccgtgatccccctttgtacaccaaacggaacccgaatccgagcccaaacccgcatcctcctccgggtactagtttttcgaatagtgggtcgactcgtcctgcgataccacctcgggtgtatccaccatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15468" stop="14177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15168" g_stop="14477" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E544265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15168" e_stop="14477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCGAACCCTTAAAATCAACTTCAAATTCGCCGGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACC</genome_strand>
        <mrna_strand>AAAAAATCGAACCCTTAAAATCAACTTCAAATTCGCCGGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481488" ref_strand="+" ref_description="SGN-E481488 [cSTD-18-K4]">
      <seq>ggagtttaataaatccgacgccgttttctcctccgatcacaatggtaccaccacctccggaggcggcgattcactctccttcatctccccaatacactcaacaattcttaagcaacgttctctcccaacgaggtccttcttctctcccttactccgaagacgtcaaatggctgatccgtcaacacctcgtttcgttaatcgacatgtgtccttctcttcaacccagaaccgctactttcacttacaacgacggcaggactgtgaatctccttcaggcgaacggcaccgttccgatggtctatctagatgcaacctacaatattccggtcattatttggttactggaatcttaccctcgtcaatcaccgttggtattcgtgaaccccacgcgtcatatggtcgtcaaagactcacatccatttgtgaactcttctggtattgtttcgatcccttatttgacaaattgggtatacccaagttcgaatcttgttgaattagttcgtaatttgagtaatttttttagccgtgatccccctttgtacaccaaacgaaacccgaacccgaatccgcatcctcctccgggtactagcttttcgaatagtggatcgactcgacccgcatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15431" stop="14200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15131" g_stop="14500" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E481488" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15131" e_stop="14500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCA</genome_strand>
        <mrna_strand>GGAGTTTAATAAATCCGACGCCGTTTTCTCCTCCGATCACAATGGTACCACCACCTCCGGAGGCGGCGATTCACTCTCCTTCATCTCCCCAATACACTCAACAATTCTTAAGCAACGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTCAAATGGCTGATCCGTCAACACCTCGTTTCGTTAATCGACATGTGTCCTTCTCTTCAACCCAGAACCGCTACTTTCACTTACAACGACGGCAGGACTGTGAATCTCCTTCAGGCGAACGGCACCGTTCCGATGGTCTATCTAGATGCAACCTACAATATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCACCGTTGGTATTCGTGAACCCCACGCGTCATATGGTCGTCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCGATCCCTTATTTGACAAATTGGGTATACCCAAGTTCGAATCTTGTTGAATTAGTTCGTAATTTGAGTAATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGAAACCCG-A----A-CCCGAATCCGCATCCTCCTCCGGGTACTAGCTTTTCGAATAGTGGATCGACTCGACCCGC-ATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463547" ref_strand="+" ref_description="SGN-E463547 [cPRO-15-C11]">
      <seq>ctctgagctaaaacaaattccccgtcgttctcctttttctttccgatcgccggagtttaccaaatccgacgccgttttctcctccgatcacaatggcaccaccacctccggaggcggcgattcactctccttcatctccccaatacactcaacaattcttaagcaacgttctctcccaacgaggtccttcttctctcccttactccgaagacgtcaaatggttgatccgtcaacacctcgtttcgttaatcgacatgtgtccttctcttcaacccagaaccgctactttcacttacaacgacggcaggactgtgaatctccttcaggcgaacggcaccgttccgatggtctatctagatgcaacctacaatattccggtcattatttggttactggaatcttaccctcgtcaatcaccgttggtattcgtgaaccccacgcgtcatatggtcgtcaaagactcacatccatttgtgaactcttctggtattgtttcgatcccttatttgacaaattgggtatacccaagttcgaatcttgttgaattagttcgtaatttgagtaatttttttagccgtgatccccctttgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15443" stop="14289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15136" g_stop="14589" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="594" r_length="548" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E463547" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15136" e_stop="14589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACA</genome_strand>
        <mrna_strand>TCGCCGGAGTTTACCAAATCCGACGCCGTTTTCTCCTCCGATCACAATGGCACCACCACCTCCGGAGGCGGCGATTCACTCTCCTTCATCTCCCCAATACACTCAACAATTCTTAAGCAACGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTCAAATGGTTGATCCGTCAACACCTCGTTTCGTTAATCGACATGTGTCCTTCTCTTCAACCCAGAACCGCTACTTTCACTTACAACGACGGCAGGACTGTGAATCTCCTTCAGGCGAACGGCACCGTTCCGATGGTCTATCTAGATGCAACCTACAATATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCACCGTTGGTATTCGTGAACCCCACGCGTCATATGGTCGTCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCGATCCCTTATTTGACAAATTGGGTATACCCAAGTTCGAATCTTGTTGAATTAGTTCGTAATTTGAGTAATTTTTTTAGCCGTGATCCCCCTTTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307385" ref_strand="+" ref_description="SGN-E307385 [cLEY-12-I23]">
      <seq>acaccaccaacgccggcggcggcgattcattctccgtcatctccccaatacactcaacaattcttaagcaatgttctctcccaacgaggtccttcttctctcccttactccgaagacgtaaaatggctaatccgtcaacacctcgtttcgttgatcgacacgtgtccttctcttcaacctagaaccgctactttcacttacaacgacggcagaactgtgaatctccttcaggcgaacggcacagttccgatggtctatctagatgcaacctacaacattccggtcattatttggttactggaatcttaccctcgtcaatcgccgttggtattcgtgaacccaacgcgtaatatggtcatcaaagactcacatccatttgtgaactcttctggtattgtttcaatcccttatttaaaaaattgggtatatccaagttcgaatcttgttgaattagctcgtaatttgagtcatttttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="15387" stop="14309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15087" g_stop="14609" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E307385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15087" e_stop="14609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAG</genome_strand>
        <mrna_strand>ACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461512" ref_strand="+" ref_description="SGN-E461512 [cPRO-8-P9]">
      <seq>taaacccatctcttttaaaagatgccactctgtatgattaggtctgcttacaaatcaatatatttcttcaaagatgtatccagatgttctatagtaaaagcgatgaagtaatacttgaccagtggccattacagcttgaggtaatctgagcaaaatcccactttcttggatgagatcacaacaatcgattcgaagtgctgtttcagtaacttcatcaattccatctttccaagaaggcgagtttataagctgctcctctgctagatagaatgtgtctattgccgtgtaaatcatctttgaactacaagaatctccccataaatggggttcagtgaagacgtttgagaaaaaagaagaagaagaaatcgttgtagttcttttttcgaactacttctctagttcggttcggcctaatataggtttcgactttcatgtaatttgttttatggtatatgcatattcactttgattatnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="27425" stop="6625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27126" g_stop="27032" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27031" i_stop="26887" i_length="145">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26886" g_stop="26489" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="474" r_length="380" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26488" i_stop="24936" i_length="1553">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24935" g_stop="24926" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="484" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24925" i_stop="23683" i_length="1243">
            <donor d_prob="0.206" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23682" g_stop="23637" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="530" r_length="46" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E461512" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27126" e_stop="27032"/>
          <exon e_start="26886" e_stop="26489"/>
          <exon e_start="24935" e_stop="24926"/>
          <exon e_start="23682" e_stop="23637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCATCTCTTTTAAAAGATGCCTCTCTGTTCTGATTAGGTCTGCTTTCAAATCAATATATTTTTTCGAAGATGTATCCAGATGTTCTACAGGTAAGTTTTCTCTCTTATATTCCATTCTGTGGAAAACAACAAACACCTGCGTTGCTTTTCTCGGGCTTCTTTGAGTTCTGATGCAAGCCAAACACAACTAGCTGCAATACTATTCACATTAAAATGGGCAAATGATTTCTTGCACTAAAAGCGATGAAGTAATACTTGACCAGTGGCCATTACAGCTTGAGGTAATCTGAGCAAAATCCCACTTTCTTGGATGAGATCACAACCATAGATTCGAAGTGCTGTTTTAGTAACTTCATCAATTCCATCTTTCCTAGAAGGCGAGTTTCTAAGCTGCTCCTCCACAAGATAGAATGTGTCTAGTGCCGTGTAAGTCATGGTTGAACTTCAAGAATCTCCACATTTCCCCATAAATGGGGTTCAGTGATGACGTTTGAGAGAAAAGAAGAAGAAGAAATCGTTGTGGAAGCACTAATTTCTTTTTTCGAACTACTTCTCTAGTTCGGTTCGGCCTAATATAGGTTTCGACTTTCATGTAATTTGTTTTATGGTTTACACATTTTCACTTTGACTATAGTGGATAATAAATCTTTATAGTTCATCTATCATTTGAGTTGGATTGGCACATCTATTGGTGAAATCAGGATTTCCACTAAGGAGATCAAAATATAGTTCATCTACCATTTTCATAGTTCATCCACCATTTTAAGCCTTAACGATAGCACCAGAAATAACTCTAGTTCCGCGCTGAAGTTACAATTATACACAAATTTACCTTATTCTTTCTGTACTTATCTGCTCCATTGACAAGAAGAACTTTTGCTATGTCTCTGTTTCTGCTTTGCATGGCCACGTGCAGTGGCGTCCAACCAACCTGTAAGAAAGAATAACTCATCGCTAAGCTAACAAGATGACAAAAATGTGAGAAAATGAAATAAAACATCCACTTACATTATCAGCAGCATTCACGTCAACCTTGTATTTGATTAACATTTTAACCGTTTGCAAGGCTCCTACTTGAACTGCATAATGTAGAGGGGTGACACCATCCTGTTACGACCCAACACAATGAAACTTTAAGCAAGTTGTTGATGGAGTTGAAAAACAAAAACCAGTTGTCTCACCGTATCCCTGACTTGAGGGTTTGCACCTTTTCTTAGAAGATGACTGATCACAGCCTCTTTTTTACCAAAAACGGCATGGTGAAGAGCTGTTTGCCCTTCCTGTCACCAATTAACGTAATAACTACTTCAAACACAACGAACAAACAAGTATTGAACGTTAATCAACACCATCTATATTATGGATAGAGTAACTACCTTGTCAACGGCATCAATATCAAGACCCTCCTCTAGAAGTCTATCCATAAATCGTATCTGCCCTGCTAGTGCAAAAGTGTGAAGAGGGTTCCATTTTTCCTGGAGTAGAAGCACGTTCGAGAGTATCAGGACTTGCTCCAGAAACCAGCAAAAGAATACGCGATTATACTAGCATATCCATAGATTCTTTTAAATAATGTGGATTTTGGTCTCTAAAGACTGTAGGTAGTATCTAAGACGGTACAAACAGCAAGTCCGTTGCTTGCATACTAATCTATTTGTCAGAGAAGAATGTAAATATGAAAGAAGCAGCTGAATCCTTTGGAACTTACAGTTGATATCTTATCCAGCTCTGGAGTTTGATTGTGATACAAAATTTCCCTTTCCTCTGGACTCAAAAGCTGTTCAACTTCTGAAAAATAAAAGAACATGCTAGTTTCAGATATTTGAGATTCGAAAGGTATCAGATAACTATACGTGAAACATTCGAGACTACTATAAGAGATTCTGGAGATCCAAAAGACACGAGATACTGCATCACAAGGAAAAAGAAAATAATCAGGTATACAAAAGATAAGCTGAATTGATGCACTAGAGCTCCTGCCAACTGAAGATATGGATTCGGGATTTGAACTTTACGAGTGCGAGTTTGGAATTCTAATATAACAAGCTTCTCAATATATATATATATATAAAAAAAAAAAAATCTCTAACATCTACGTACACTCTATCCTCCCCATATCCGACTTGTGTAATTACACTGCTTATGTTGTTATTGAATAAACTAATAACTTTTCAAGTTGAAAACAGGAAAAAGGAAGTACCTTTCACAAACTCATCTTCCCTGTTAGACAAACCATTTGTAGAATTGTCCATAGCTCTATTTTCTTCATATTCAAAGCTACTCTCAACATCCATATCTTCTTCCCTCTCCTCTTCTTCTTCTTCTTCTTCTTCACTATCACTACCATCATCAGGATCTTCCCAAAAATGAGCTTTTCTTAAGTTAACAACACTATTCCTTGTAGAAATTTCTTGAAAAGAACGAAACCCCATGTTAATTCTTCTTGTAAATCTGTGAGAAACAACATTAGAGCAGCTAAACCTGCAGGTATAAGCCGTAGCTGTAACTGTCATTGGCCATAGCTGCGTAAATAGAGAAGATGAATTACACTGCAACACCATTATTTTCTCCATTTTCAATCTTTATACTAAACTATAACACCAAATTGAAGATTCCCATTGATCAACAACTTGGATAATTTACTTTCTTTGAGGAATTTCATCAAACAGGTAAGAGGCAAGGTTAACTTGTTCAGACAAGATTAACTTGGGCCTCTCTAATGGGCTTCATCCATTTGGGGCCGAAAAACTCTTTTTTATCGAAAAATTACATGAATTAATACATTTTTAAAAATAATTACTGATATTTTTTATTTATTACCATTTATAATAGTACTGTGATAAATCTCTAATATGTATTAAAAGTGAATTATGTATGCAATATATATGAATTATAATTGTTTTAGAAATATATTATGTTTATTAAAAGATTGTCACATTGTATTATAAGTGTATTAAAATGTGTGATAAATGTATTATCTATCATTAAAACTTGTATTATATGTGAATAATAAATTGTTCTTTGTAATATGTATTAAACTTGTATTATAAATGAATTAAAAGTGATCAAGTGAAAAATAAATATTATTACTATAAATGGTAAATATTTTTTTATTACATTACATTTACGTAAGTTTTCCTTTTTTTATTATTATTATTCAAATGTACCAACTAGTTTTAAAATCGTAAAATATTATAGTATCTTACATTATTAGTTAATATAAATCTAAAATTTAAATCAACTTGATCATAAGTGTGTAGTCAAATTGTATTATTGGCAATGTTTTTATTTATGGAAATCCAAATTATATTTACTATAAGTAAAATAAATTTCCTTGTCCTAGACATATTTGGACTAATATAATTTTATTTTCTTTATATAATGTATAGTTATAGTTATTCTTTTAACGTAGACATAATTAATTTTTTTTGTTTTTGAGTAGAAAAGAAAGGGAAGATGGAGTTGGAAGAAAACAAGAAGGAAAA</genome_strand>
        <mrna_strand>TAAACCCATCTCTTTTAAAAGATGCCACTCTG-TATGATTAGGTCTGCTTACAAATCAATATATTTCTTCAAAGATGTATCCAGATGTTCTATAG.................................................................................................................................................TAAAAGCGATGAAGTAATACTTGACCAGTGGCCATTACAGCTTGAGGTAATCTGAGCAAAATCCCACTTTCTTGGATGAGATCACAACAATCGATTCGAAGTGCTGTTTCAGTAACTTCATCAATTCCATCTTTCCAAGAAGGCGAGTTTATAAGCTGCTCCTCTGCTAGATAGAATGTGTCTATTGCCGTGTAAATCATCTTTGAACTACAAGAA--T---C---TCCCCATAAATGGGGTTCAGTGAAGACGTTTGAGAAAAAAGAAGAAGAAGAAATCGTTGT---AG-------TTCTTTTTTCGAACTACTTCTCTAGTTCGGTTCGGCCTAATATAGGTTTCGACTTTCATGTAATTTGTTTTATGGTATATGCATATTCACTTTGATTATN.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NNAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291796" ref_strand="+" ref_description="SGN-E291796 [cLET-7-I23]">
      <seq>ttatccaagttgttgatcaatgggaatcttcaatttggtgttatagtttagtataaagattgaaaatggagaaaataatggtgttgcagtgtaattcatcttctctatttacgcagctatggccaatgacagttacagnctaccgggnnnccattttttcatacctgcaggtttagctgctctaatgttgtttctcacagatttacaagaagaattaacatggggtttcgttcttttcaagaaatttctacaaggaatagtgttgttaacttaagaaaagctcatttttgggaagatcctgatgatggtagtgatagtgaagaagaagaagaagaagaagaggagagggaagaagatatggatgttgagagtagctttgaatatgaagaaaatagagctatggacaattctacaaatggtttgtctaacagggaagatgagtttgtgaaagaagttgaacagcttttgagtccagaggaaagggaaattttgtatcacaatcaaactccaaagctggataagatatcaactgaaaaatggaaccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="24184" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24484" g_stop="24921" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24922" i_stop="25333" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25334" g_stop="25413" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="531" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25414" i_stop="25646" i_length="233">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25647" g_stop="25662" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="547" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E291796" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24484" e_stop="24921"/>
          <exon e_start="25334" e_stop="25413"/>
          <exon e_start="25647" e_stop="25662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAGTTGTTGATCAATGGGAATCTTCAATTTGGTGTTATAGTTTAGTATAAAGATTGAAAATGGAGAAAATAATGGTGTTGCAGTGTAATTCATCTTCTCTATTTACGCAGCTATGGCCAATGACAGTTACAG-CTA-C-GG----C-----TT-ATACCTGCAGGTTTAGCTGCTCTAATGTTGTTTCTCACAGATTTACAAGAAGAATTAACATGGGGTTTCGTTCTTTTCAAGAAATTTCTACAAGGAATAGTGTTGTTAACTTAAGAAAAGCTCATTTTTGGGAAGATCCTGATGATGGTAGTGATAGTGAAGAAGAAGAAGAAGAAGAAGAGGAGAGGGAAGAAGATATGGATGTTGAGAGTAGCTTTGAATATGAAGAAAATAGAGCTATGGACAATTCTACAAATGGTTTGTCTAACAGGGAAGATGAGTTTGTGAAAGGTACTTCCTTTTTCCTGTTTTCAACTTGAAAAGTTATTAGTTTATTCAATAACAACATAAGCAGTGTAATTACACAAGTCGGATATGGGGAGGATAGAGTGTACGTAGATGTTAGAGATTTTTTTTTTTTTATATATATATATATATTGAGAAGCTTGTTATATTAGAATTCCAAACTCGCACTCGTAAAGTTCAAATCCCGAATCCATATCTTCAGTTGGCAGGAGCTCTAGTGCATCAATTCAGCTTATCTTTTGTATACCTGATTATTTTCTTTTTCCTTGTGATGCAGTATCTCGTGTCTTTTGGATCTCCAGAATCTCTTATAGTAGTCTCGAATGTTTCACGTATAGTTATCTGATACCTTTCGAATCTCAAATATCTGAAACTAGCATGTTCTTTTATTTTTCAGAAGTTGAACAGCTTTTGAGTCCAGAGGAAAGGGAAATTTTGTATCACAATCAAACTCCAGAGCTGGATAAGATATCAACTGTAAGTTCCAAAGGATTCAGCTGCTTCTTTCATATTTACATTCTTCTCTGACAAATAGATTAGTATGCAAGCAACGGACTTGCTGTTTGTACCGTCTTAGATACTACCTACAGTCTTTAGAGACCAAAATCCACATTATTTAAAAGAATCTATGGATATGCTAGTATAATCGCGTATTCTTTTGCTGGTTTCTGGAGCAAGTCCTGATACTCTCGAACGTGCTTCTACTCCAGGAAAAATGGAACCCTC</genome_strand>
        <mrna_strand>TTATCCAAGTTGTTGATCAATGGGAATCTTCAATTTGGTGTTATAGTTTAGTATAAAGATTGAAAATGGAGAAAATAATGGTGTTGCAGTGTAATTCATCTTCTCTATTTACGCAGCTATGGCCAATGACAGTTACAGNCTACCGGGNNNCCATTTTTTCATACCTGCAGGTTTAGCTGCTCTAATGTTGTTTCTCACAGATTTACAAGAAGAATTAACATGGGGTTTCGTTCTTTTCAAGAAATTTCTACAAGGAATAGTGTTGTTAACTTAAGAAAAGCTCATTTTTGGGAAGATCCTGATGATGGTAGTGATAGTGAAGAAGAAGAAGAAGAAGAAGAGGAGAGGGAAGAAGATATGGATGTTGAGAGTAGCTTTGAATATGAAGAAAATAGAGCTATGGACAATTCTACAAATGGTTTGTCTAACAGGGAAGATGAGTTTGTGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGAACAGCTTTTGAGTCCAGAGGAAAGGGAAATTTTGTATCACAATCAAACTCCAAAGCTGGATAAGATATCAACT.........................................................................................................................................................................................................................................GAAAAATGGAACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344864" ref_strand="+" ref_description="SGN-E344864 [cTOF-21-D1]">
      <seq>tgtaattcatcttctctatttacgcagctatggccaatgacagttacagctacggcttatacctgcaggtttagctgctctaatgttgtttctcacagatttacaagaagaattaacatggggtttcgttcttttcaagaaatttctacaaggaatagtgttgttaacttaagaaaagctcatttttgggaagatcctgatgatggtagtgatagtgaagaagaagaagaagaagaagaggagagggaagaagatatggatgttgagagtagctttgaatatgaagaaaatagagctatggacaattctacaaatggtttgtctaacagggaagatgagtttgtgaaagaagttgaacagcttttgagtccagaggaaagggaaattttgtatcacaatcaaactccagagctggataagatatcaactgaaaaatggaaccctcttcacacttttgcactagcagggcagatacgatttatggatagacttctagaggagggtcttgatattgatgccgttgacaaggaagggcaaacagctcttcaccatgccgttttttggtaaaaagaggctgtgatcagtcatcttctaagaaaagtgcaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="24273" stop="26224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24573" g_stop="24921" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24922" i_stop="25333" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25334" g_stop="25413" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25414" i_stop="25646" i_length="233">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25647" g_stop="25745" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="528" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25746" i_stop="25841" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25842" g_stop="25924" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="610" r_length="82" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E344864" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24573" e_stop="24921"/>
          <exon e_start="25334" e_stop="25413"/>
          <exon e_start="25647" e_stop="25745"/>
          <exon e_start="25842" e_stop="25924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTCATCTTCTCTATTTACGCAGCTATGGCCAATGACAGTTACAGCTACGGCTTATACCTGCAGGTTTAGCTGCTCTAATGTTGTTTCTCACAGATTTACAAGAAGAATTAACATGGGGTTTCGTTCTTTTCAAGAAATTTCTACAAGGAATAGTGTTGTTAACTTAAGAAAAGCTCATTTTTGGGAAGATCCTGATGATGGTAGTGATAGTGAAGAAGAAGAAGAAGAAGAAGAGGAGAGGGAAGAAGATATGGATGTTGAGAGTAGCTTTGAATATGAAGAAAATAGAGCTATGGACAATTCTACAAATGGTTTGTCTAACAGGGAAGATGAGTTTGTGAAAGGTACTTCCTTTTTCCTGTTTTCAACTTGAAAAGTTATTAGTTTATTCAATAACAACATAAGCAGTGTAATTACACAAGTCGGATATGGGGAGGATAGAGTGTACGTAGATGTTAGAGATTTTTTTTTTTTTATATATATATATATATTGAGAAGCTTGTTATATTAGAATTCCAAACTCGCACTCGTAAAGTTCAAATCCCGAATCCATATCTTCAGTTGGCAGGAGCTCTAGTGCATCAATTCAGCTTATCTTTTGTATACCTGATTATTTTCTTTTTCCTTGTGATGCAGTATCTCGTGTCTTTTGGATCTCCAGAATCTCTTATAGTAGTCTCGAATGTTTCACGTATAGTTATCTGATACCTTTCGAATCTCAAATATCTGAAACTAGCATGTTCTTTTATTTTTCAGAAGTTGAACAGCTTTTGAGTCCAGAGGAAAGGGAAATTTTGTATCACAATCAAACTCCAGAGCTGGATAAGATATCAACTGTAAGTTCCAAAGGATTCAGCTGCTTCTTTCATATTTACATTCTTCTCTGACAAATAGATTAGTATGCAAGCAACGGACTTGCTGTTTGTACCGTCTTAGATACTACCTACAGTCTTTAGAGACCAAAATCCACATTATTTAAAAGAATCTATGGATATGCTAGTATAATCGCGTATTCTTTTGCTGGTTTCTGGAGCAAGTCCTGATACTCTCGAACGTGCTTCTACTCCAGGAAAAATGGAACCCTCTTCACACTTTTGCACTAGCAGGGCAGATACGATTTATGGATAGACTTCTAGAGGAGGGTCTTGATATTGATGCCGTTGACAAGGTAGTTACTCTATCCATAATATAGATGGTGTTGATTAACGTTCAATACTTGTTTGTTCGTTGTGTTTGAAGTAGTTATTACGTTAATTGGTGACAGGAAGGGCAAACAGCTCTTCACCATGCCGTTTTTGGTAAAAAAGAGGCTGTGATCAGTCATCTTCTAAGAAAAGGTGCAAACCC</genome_strand>
        <mrna_strand>TGTAATTCATCTTCTCTATTTACGCAGCTATGGCCAATGACAGTTACAGCTACGGCTTATACCTGCAGGTTTAGCTGCTCTAATGTTGTTTCTCACAGATTTACAAGAAGAATTAACATGGGGTTTCGTTCTTTTCAAGAAATTTCTACAAGGAATAGTGTTGTTAACTTAAGAAAAGCTCATTTTTGGGAAGATCCTGATGATGGTAGTGATAGTGAAGAAGAAGAAGAAGAAGAAGAGGAGAGGGAAGAAGATATGGATGTTGAGAGTAGCTTTGAATATGAAGAAAATAGAGCTATGGACAATTCTACAAATGGTTTGTCTAACAGGGAAGATGAGTTTGTGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGAACAGCTTTTGAGTCCAGAGGAAAGGGAAATTTTGTATCACAATCAAACTCCAGAGCTGGATAAGATATCAACT.........................................................................................................................................................................................................................................GAAAAATGGAACCCTCTTCACACTTTTGCACTAGCAGGGCAGATACGATTTATGGATAGACTTCTAGAGGAGGGTCTTGATATTGATGCCGTTGACAAG................................................................................................GAAGGGCAAACAGCTCTTCACCATGCCGTTTTTTGGTAAAAAGAGGCTGTGATCAGTCATCTTCTAAGAAAA-GTGCAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548437" ref_strand="+" ref_description="SGN-E548437 [TUS-61-D4](-)">
      <seq>aagaaaaggtgcaaaccctcaagtcagggatacggatggtgtcacccctctacattatgcagttcaagtaggagccttgcaaacggttaaaatgttaatcaaatacaaggttgacgtgaatgctgctgataatgttggttggacgccactgcacgtggccatgcaaagcagaaacagagacatagcaaaagttcttcttgtcaatggagcagataagtacagaaagaataaggatggtaaaacaccccttgatattagcctttgttatggcaaagatttcaagtcttatgatctggctaagttactgaagcttgtaaatgctaatagagagctgtgatttgcatttttactcccatcaaagatgaagacaatcaatcatagtcaaagaggaagttcttcaacgcgttgagacggatacatagaaacacaattcagagcaacttttggacatggaatcactagaattttagaatatttgggcagttgtgtagtcagtcttgcaacagatttgtaaaaatagaacagaacttgttttcttatgatatgtatgtgcttgtgtagattttagcacattatattgtgcttgcatcaggtgaataggcaagtcatgtatttacgtggactttacccctacctcacggtaatgaagaaaaaaaaagcagtacaatatggaagttcacaaaaaagaaaaaaaaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="25607" stop="32466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25907" g_stop="25940" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25941" i_stop="26014" i_length="74">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26015" g_stop="26113" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="133" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26114" i_stop="26190" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26191" g_stop="26289" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26290" i_stop="28458" i_length="2169">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28459" g_stop="28913" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="686" r_length="454" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28914" i_stop="29153" i_length="240">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.743" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29154" g_stop="29172" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="705" r_length="19" r_score="0.421"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E548437" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25907" e_stop="25940"/>
          <exon e_start="26015" e_stop="26113"/>
          <exon e_start="26191" e_stop="26289"/>
          <exon e_start="28459" e_stop="28913"/>
          <exon e_start="29154" e_stop="29172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAGGTGCAAACCCTCAAGTCAGGGATACGGTGAGACAACTGGTTTTTGTTTTTCAACTCCATCAACAACTTGCTTAAAGTTTCATTGTGTTGGGTCGTAACAGGATGGTGTCACCCCTCTACATTATGCAGTTCAAGTAGGAGCCTTGCAAACGGTTAAAATGTTAATCAAATACAAGGTTGACGTGAATGCTGCTGATAATGTAAGTGGATGTTTTATTTCATTTTCTCACATTTTTGTCATCTTGTTAGCTTAGCGATGAGTTATTCTTTCTTACAGGTTGGTTGGACGCCACTGCACGTGGCCATGCAAAGCAGAAACAGAGACATAGCAAAAGTTCTTCTTGTCAATGGAGCAGATAAGTACAGAAAGAATAAGGTAAATTTGTGTATAATTGTAACTTCAGCGCGGAACTAGAGTTATTTCTGGTGCTATCGTTAAGGCTTAAAATGGTGGATGAACTATGAAAATGGTAGATGAACTATATTTTGATCTCCTTAGTGGAAATCCTGATTTCACCAATAGATGTGCCAATCCAACTCAAATGATAGATGAACTATAAAGATTTATTATCCACTATAGTCAAAGTGAAAATGTGTAAACCATAAAACAAATTACATGAAAGTCGAAACCTATATTAGGCCGAACCGAACTAGAGAAGTAGTTCGAAAAAAGAAATTAGTGCTTCCACAACGATTTCTTCTTCTTCTTTTCTCTCAAACGTCATCACTGAACCCCATTTATGGGGAAATGTGGAGATTCTTGAAGTTCAACCATGACTTACACGGCACTAGACACATTCTATCTTGTGGAGGAGCAGCTTAGAAACTCGCCTTCTAGGAAAGATGGAATTGATGAAGTTACTAAAACAGCACTTCGAATCTATGGTTGTGATCTCATCCAAGAAAGTGGGATTTTGCTCAGATTACCTCAAGCTGTAATGGCCACTGGTCAAGTATTACTTCATCGCTTTTAGTGCAAGAAATCATTTGCCCATTTTAATGTGAATAGTATTGCAGCTAGTTGTGTTTGGCTTGCATCAGAACTCAAAGAAGCCCGAGAAAAGCAACGCAGGTGTTTGTTGTTTTCCACAGAATGGAATATAAGAGAGAAAACTTACCTGTAGAACATCTGGATACATCTTCGAAAAAATATATTGATTTGAAAGCAGACCTAATCAGAACAGAGAGGCATCTTTTAAAAGAGATGGGTTTTATCTGCCATGTCGAGCATCCTCATAAATTTATATCAAACTACCTTGCAACTCTTGAAACACCTGCAGAATTGAGACAAGAAGCTTGGAACCTTGCAAATGACAGTTTGCGCACAACACTCGGTGTAAGATCAAGAATGAGGTTGTGGCCTGTGGAGTTGTATATGCTGCAGCCCGTAGATTTCAAGTGACCCTCCCAGAGAATCCTCCTTGGTGGAAGGCATTTGATGCAGAAAAGGCTGATATTGGTGATGTTTGCGGAGTTCTCGCTCATCTTTACAGCCTTCCAAAGGCGCAATGCATTCCTGTGTGCAAGTACGGAGGCCCCTTTGCTTCATCAAACAGATCAAGGTTTGTTGGATGTTCCACCAGTGGGCGAAGAAACTGAGGAAGTTGCTAAAGATGTAGTAATAAAAGGTTTGTTGGATGTTCCACCAGTGGATGAAGATACTGAGGAAGTTGCTAAGGATGTAGTAATAAAAGCTGCCCTCGATAAGTTAAAAAGACTCAAAGAAGAGCGATGATGACTCTAAAAGCATGCCTTCAAAAGGGGAGTCAAAAGAAGACCCTGGAAGAGCTGACAATAGAACAGATGCCGCTGGAGGAAAGGAGGAGAGAGAGAGAGGACAAGGAAAGACTAAAGTCCCGTGAATGTGGTTGGGGAAGGAAATCTGACAGGGAAAGGGAGCGAGGGATGGAGAAAAATCCAGGGAAAGGAATCATCATTCAAGAGACGAAGGTCACGCGGAGAATCCAAAACATCACTCTTCTCGAGATTGTGATTACCAGTCTTATCCATCACAGGAGAAGGATCTTCGTAGACACCATTAGCTTGGAGAGCGGCCTGGCAAAATGTTACCATGCCAAATATGTTTGTGGTTTTTCTTGAGCATAGCTGCAGCTCTTTGCATATATCTGAGAGTGCCTTCTTCGTGAAACATTGGTTTTACCTTGCCTATATATATCATCTAAGGTCTCCTGTAGTCAAGACATTGGTTTTACCTATTTGCTTTTACTTCCCATGAATAATTGACTTACCTTTGCTGTCTAAATTGCTTGTAGACTAAAGCAGGATTGTTAACTTTCTGCACTACAGTTATATACTTGCGTGACTGGGAAAAAAAGCGTATGCCATAGTTTACTAATATACATTTTACTTTAGCTTATGACTTAACCATGGTATAGTTGTATGATTTTGTGTAAACACGGGATGCAGAAAGCGGATTTTTCATAGCGTGGGTCCTCTTTGACTAGTTATACCCTACCTATGTTTCTTTTTTCTTAAATATATGCATATGAAAATTTAATAACCTCTGGACATTTACATTTCACAGGATGGTAAAACACCCCTTGATATTAGCCTTTGTTATGGCAAAGATTTCAAGTCTTATGATCTGGCTAAGTTACTGAAGCTTGTAAATGCTAATAGAGAGCTGTGATTTGCATTTTTACTCCCATCAAAGATGAAGACAATCAATCATAGTCAAAGAGGAAGTTCTTCAACGCGTTGAGACGGATACATAGAAACACAATTCAGAGCAACTTTTGGACATGGAATCACTAGAATTTTAGAATATTTGGGCAGTTGTGTAGTCAGTCTTGCAACAGATTTGTAAAAATAGAACAGAACTTGTTTTCTTATGATATGTATGTGCTTGTGTAGATTTTAGCACATTATATTGTGCTTGCATCAGGTGAATAGGCAAGTCATGTATTTACATGGACTTTACCCCTACCTCACGGTAATGAAGAAAAAAAAAGCAGTACAATATGGAAGTGTCACAAATATGTATCCTAATATAGCTGTAACATATGATTACTTGCAAACAAGAATATCCAAAGTATTTTAACGCTATGGTTACGCAGTTCACAACAGGTACCGCAATCATAATTGTTATCTCATCAAACATTGCCTCTAGCGTTTTAACTGATCGTGATGTGCTAGATATCGTTTGATCAGTGCTTTGAATAGACAGAGGTTTACTACAAGTACAATAACATCTAAAACAATGCATTTTCTGATTCTAAGGAACAGGTCAATCGCCGCT</genome_strand>
        <mrna_strand>AAGAAAAGGTGCAAACCCTCAAGTCAGGGATACG..........................................................................GATGGTGTCACCCCTCTACATTATGCAGTTCAAGTAGGAGCCTTGCAAACGGTTAAAATGTTAATCAAATACAAGGTTGACGTGAATGCTGCTGATAAT.............................................................................GTTGGTTGGACGCCACTGCACGTGGCCATGCAAAGCAGAAACAGAGACATAGCAAAAGTTCTTCTTGTCAATGGAGCAGATAAGTACAGAAAGAATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTAAAACACCCCTTGATATTAGCCTTTGTTATGGCAAAGATTTCAAGTCTTATGATCTGGCTAAGTTACTGAAGCTTGTAAATGCTAATAGAGAGCTGTGATTTGCATTTTTACTCCCATCAAAGATGAAGACAATCAATCATAGTCAAAGAGGAAGTTCTTCAACGCGTTGAGACGGATACATAGAAACACAATTCAGAGCAACTTTTGGACATGGAATCACTAGAATTTTAGAATATTTGGGCAGTTGTGTAGTCAGTCTTGCAACAGATTTGTAAAAATAGAACAGAACTTGTTTTCTTATGATATGTATGTGCTTGTGTAGATTTTAGCACATTATATTGTGCTTGCATCAGGTGAATAGGCAAGTCATGTATTTACGTGGACTTTACCCCTACCTCACGGTAATGAAGAAAAAAAAAGCAGTACAATATGGAAGT-TCACAAAAAA................................................................................................................................................................................................................................................GAAAAAAAAAAACTCGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615800" ref_strand="+" ref_description="SGN-E615800 [65602]">
      <seq>gaagaactgcaggtaaattgtagaagccaatcacagctttctattagcaggaacaagcttcagtaacttagccagatcataggatttgaaatctttgccataacaaaggctaatatcaagctgttcaagagttgctaggtagtttgatataaatttatgaggatgctcgacatggcagattaaacccatctcttttaaaagatgccactctgtatgattaggtctgcttacaaatcaatatatttcttcaaagatgtatccagatgttctatagtaaaagcgatgaagtaatacttgaccagtggccattacagcttgaggtaatctgagcaaaatcccactttcttggatgagatcacaagcaatcgattcgaagtgctgtttcaggtaacttcatcaattccatctttccaagaaggcgagtttataagctgctcctctgctagatagaatgtgtctattgccgtgtaaatcatctttgaactacaaggaatctccccataaatggggttcagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="28841" stop="26338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28565" g_stop="28472" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="120" r_length="92" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28471" i_stop="27188" i_length="1284">
            <donor d_prob="0.145" d_score="0.92"/>
            <acceptor a_prob="0.743" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27032" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="274" r_length="154" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27031" i_stop="26887" i_length="145">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26886" g_stop="26638" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="518" r_length="244" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E615800" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28565" e_stop="28472"/>
          <exon e_start="27187" e_stop="27032"/>
          <exon e_start="26886" e_stop="26638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACAGCTCTCTATTAGCATTTACAAGCTTCAGTAACTTAGCCAGATCATAAGACTTGAAATCTTTGCCATAACAAAGGCTAATATCAAGGGGTGTTTTACCATCCTGTGAAATGTAAATGTCCAGAGGTTATTAAATTTTCATATGCATATATTTAAGAAAAAAGAAACATAGGTAGGGTATAACTAGTCAAAGAGGACCCACGCTATGAAAAATCCGCTTTCTGCATCCCGTGTTTACACAAAATCATACAACTATACCATGGTTAAGTCATAAGCTAAAGTAAAATGTATATTAGTAAACTATGGCATACGCTTTTTTTCCCAGTCACGCAAGTATATAACTGTAGTGCAGAAAGTTAACAATCCTGCTTTAGTCTACAAGCAATTTAGACAGCAAAGGTAAGTCAATTATTCATGGGAAGTAAAAGCAAATAGGTAAAACCAATGTCTTGACTACAGGAGACCTTAGATGATATATATAGGCAAGGTAAAACCAATGTTTCACGAAGAAGGCACTCTCAGATATATGCAAAGAGCTGCAGCTATGCTCAAGAAAAACCACAAACATATTTGGCATGGTAACATTTTGCCAGGCCGCTCTCCAAGCTAATGGTGTCTACGAAGATCCTTCTCCTGTGATGGATAAGACTGGTAATCACAATCTCGAGAAGAGTGATGTTTTGGATTCTCCGCGTGACCTTCGTCTCTTGAATGATGATTCCTTTCCCTGGATTTTTCTCCATCCCTCGCTCCCTTTCCCTGTCAGATTTCCTTCCCCAACCACATTCACGGGACTTTAGTCTTTCCTTGTCCTCTCTCTCTCTCCTCCTTTCCTCCAGCGGCATCTGTTCTATTGTCAGCTCTTCCAGGGTCTTCTTTTGACTCCCCTTTTGAAGGCATGCTTTTAGAGTCATCATCGCTCTTCTTTGAGTCTTTTTAACTTATCGAGGGCAGCTTTTATTACTACATCCTTAGCAACTTCCTCAGTATCTTCATCCACTGGTGGAACATCCAACAAACCTTTTATTACTACATCTTTAGCAACTTCCTCAGTTTCTTCGCCCACTGGTGGAACATCCAACAAACCTTGATCTGTTTGATGAAGCAAAGGGGCCTCCGTACTTGCACACAGGAATGCATTGCGCCTTTGGAAGGCTGTAAAGATGAGCGAGAACTCCGCAAACATCACCAATATCAGCCTTTTCTGCATCAAATGCCTTCCACCAAGGAGGATTCTCTGGGAGGGTCACTTGAAATCTACGGGCTGCAGCATATACAACTCCACAGGCCACAACCTCATTCTTGATCTTACACCGAGTGTTGTGCGCAAACTGTCATTTGCAAGGTTCCAAGCTTCTTGTCTCAATTCTGCAGGTGTTTCAAGAGTTGCAAGGTAGTTTGATATAAATTTATGAGGATGCTCGACATGGCAGATAAAACCCATCTCTTTTAAAAGATGCCTCTCTGTTCTGATTAGGTCTGCTTTCAAATCAATATATTTTTTCGAAGATGTATCCAGATGTTCTACAGGTAAGTTTTCTCTCTTATATTCCATTCTGTGGAAAACAACAAACACCTGCGTTGCTTTTCTCGGGCTTCTTTGAGTTCTGATGCAAGCCAAACACAACTAGCTGCAATACTATTCACATTAAAATGGGCAAATGATTTCTTGCACTAAAAGCGATGAAGTAATACTTGACCAGTGGCCATTACAGCTTGAGGTAATCTGAGCAAAATCCCACTTTCTTGGATGAGATCACAA-CCATAGATTCGAAGTGCTGTTTTA-GTAACTTCATCAATTCCATCTTTCCTAGAAGGCGAGTTTCTAAGCTGCTCCTCCACAAGATAGAATGTGTCTAGTGCCGTGTAAGTCATGGTTGAACTTCAAGAATCTCCACATTTCCCCATAAATGGGGTTCAGTGA</genome_strand>
        <mrna_strand>AATCACAGCTTTCTATTAGCAGGAACAAGCTTCAGTAACTTAGCCAGATCATAGGATTTGAAATCTTTGCCATAACAAAGGCTAATATCAA--G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-TTCAAGAGTTGCTAGGTAGTTTGATATAAATTTATGAGGATGCTCGACATGGCAGATTAAACCCATCTCTTTTAAAAGATGCCACTCTG-TATGATTAGGTCTGCTTACAAATCAATATATTTCTTCAAAGATGTATCCAGATGTTCTATAG.................................................................................................................................................TAAAAGCGATGAAGTAATACTTGACCAGTGGCCATTACAGCTTGAGGTAATCTGAGCAAAATCCCACTTTCTTGGATGAGATCACAAGCAATCGATTCGAAGTGCTGTTTCAGGTAACTTCATCAATTCCATCTTTCCAAGAAGGCGAGTTTATAAGCTGCTCCTCTGCTAGATAGAATGTGTCTATTGCCGTGTAAATCATCTTTGAACTACAAG------GA-ATCTCCCCATAAATGGGGTTCAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445549" ref_strand="+" ref_description="SGN-E445549 [cSTA-45-P8]">
      <seq>ccatttttaggggattcttgaagttcaactatgatttacacggcaatagacacattctatctagcagaggagcagcttatagactcaccttctaggaaagatggaattgatgatgttacagaaacagcgcttcgaatctatggttgtgatctcgtccaagaatgtgggattatgctcagattacctcaagctgtaatggccactggtcaagtgttatttcatcgcttttactgcaagaaatcatttgctcgttttaatgtgaagagggttgctgctagttgtgtttggcttgcatcaaaactcgaagaaagcccgagaaaagcaaggcaggtgcttgttgttttccacagaatggaatgtaggagagaaaacttacctatagaacatctggatacatcttcgaagaaatatattgatttgaaagcagacctaatcagaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="26363" stop="27397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26670" g_stop="27097" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="442" r_length="429" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E445549" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26670" e_stop="27097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTGAAGTTCAACCATGACTTACACGGCACTAGACACATTCTATCTTGTGGAGGAGCAGCTTAGAAACTCGCCTTCTAGGAAAGATGGAATTGATGAAGTTACTAAAACAGCACTTCGAATCTATGGTTGTGATCTCATCCAAGAAAGTGGGATTTTGCTCAGATTACCTCAAGCTGTAATGGCCACTGGTCAAGTATTACTTCATCGCTTTTAGTGCAAGAAATCATTTGCCCATTTTAATGTGAATAGTATTGCAGCTAGTTGTGTTTGGCTTGCATCAGAACTCAAAG-AAGCCCGAGAAAAGCAACGCAGGTGTTTGTTGTTTTCCACAGAATGGAATATAAGAGAGAAAACTTACCTGTAGAACATCTGGATACATCTTCGAAAAAATATATTGATTTGAAAGCAGACCTAATCAGAACAG</genome_strand>
        <mrna_strand>ATTCTTGAAGTTCAACTATGATTTACACGGCAATAGACACATTCTATCTAGCAGAGGAGCAGCTTATAGACTCACCTTCTAGGAAAGATGGAATTGATGATGTTACAGAAACAGCGCTTCGAATCTATGGTTGTGATCTCGTCCAAGAATGTGGGATTATGCTCAGATTACCTCAAGCTGTAATGGCCACTGGTCAAGTGTTATTTCATCGCTTTTACTGCAAGAAATCATTTGCTCGTTTTAATGTGAAGAGGGTTGCTGCTAGTTGTGTTTGGCTTGCATCAAAACTCGAAGAAAGCCCGAGAAAAGCAAGGCAGGTGCTTGTTGTTTTCCACAGAATGGAATGTAGGAGAGAAAACTTACCTATAGAACATCTGGATACATCTTCGAAGAAATATATTGATTTGAAAGCAGACCTAATCAGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315818" ref_strand="+" ref_description="SGN-E315818 [cTOA-26-L8]">
      <seq>ttgaactatgatttacacggcaatagacacattctatctagcagaggagcagcttgtagaatctccttctaggaaagatggaatcgatgatgttacagaaacagcgcttcgaatctatggttgtgatctcgttcaagaatgtgggattttgctcagattacctcaagctgtaatggccactggccaagtgttatttcatcgcttttactgcaagaaatcatttgcccgttttaatgtgaagagggttgctgctagttgtgtttggcttgcatcaaaacttgaagaaagtccgagaaaagcaaggcaggtgcttgttgttttccacagaatggaatgtaggagagaaaacttacctatagaacatctggatacatcttcgaagaaatatgttgatttgaaagcagacctaatcagaacagagaggcatctgttaaaagagatgggtttcatctgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="26379" stop="27435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26680" g_stop="27135" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E315818" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26680" e_stop="27135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCATGACTTACACGGCACTAGACACATTCTATCTTGTGGAGGAGCAGCTTAGAAACTCGCCTTCTAGGAAAGATGGAATTGATGAAGTTACTAAAACAGCACTTCGAATCTATGGTTGTGATCTCATCCAAGAAAGTGGGATTTTGCTCAGATTACCTCAAGCTGTAATGGCCACTGGTCAAGTATTACTTCATCGCTTTTAGTGCAAGAAATCATTTGCCCATTTTAATGTGAATAGTATTGCAGCTAGTTGTGTTTGGCTTGCATCAGAACTCAAAG-AAGCCCGAGAAAAGCAACGCAGGTGTTTGTTGTTTTCCACAGAATGGAATATAAGAGAGAAAACTTACCTGTAGAACATCTGGATACATCTTCGAAAAAATATATTGATTTGAAAGCAGACCTAATCAGAACAGAGAGGCATCTTTTAAAAGAGATGGGTTTTATCTGCCAT</genome_strand>
        <mrna_strand>TTGAACTATGATTTACACGGCAATAGACACATTCTATCTAGCAGAGGAGCAGCTTGTAGAATCTCCTTCTAGGAAAGATGGAATCGATGATGTTACAGAAACAGCGCTTCGAATCTATGGTTGTGATCTCGTTCAAGAATGTGGGATTTTGCTCAGATTACCTCAAGCTGTAATGGCCACTGGCCAAGTGTTATTTCATCGCTTTTACTGCAAGAAATCATTTGCCCGTTTTAATGTGAAGAGGGTTGCTGCTAGTTGTGTTTGGCTTGCATCAAAACTTGAAGAAAGTCCGAGAAAAGCAAGGCAGGTGCTTGTTGTTTTCCACAGAATGGAATGTAGGAGAGAAAACTTACCTATAGAACATCTGGATACATCTTCGAAGAAATATGTTGATTTGAAAGCAGACCTAATCAGAACAGAGAGGCATCTGTTAAAAGAGATGGGTTTCATCTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266105" ref_strand="+" ref_description="SGN-E266105 [cLEI-6-F9]">
      <seq>acctcaagctgtaatggccactggccaagtgttatttcatcgcttttactgcaagaaatcatttgcccgttttaatgtgaagagggttgctgctagttgtgtttggcttgcatcaaaacttgaagaaagtccgagaaaagcaaggcaggtgcttgttgttttccacagaatggaatgtaggagagaaaacttacctatagaacatctggatacatcttcgaagaaatatgttgatttgaaagcagacctaatcagaacagagaggcatctgttaaaagagatgggtttcatctgccatgtcgagcatcctcataaatttatatcaaactaccttgcaactcttgaaacacctgcagagttgagacaagaagcttggaatcttgcaaatgacagtttgcgcacaacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="26539" stop="27546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26839" g_stop="27246" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E266105" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26839" e_stop="27246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCAAGCTGTAATGGCCACTGGTCAAGTATTACTTCATCGCTTTTAGTGCAAGAAATCATTTGCCCATTTTAATGTGAATAGTATTGCAGCTAGTTGTGTTTGGCTTGCATCAGAACTCAAAG-AAGCCCGAGAAAAGCAACGCAGGTGTTTGTTGTTTTCCACAGAATGGAATATAAGAGAGAAAACTTACCTGTAGAACATCTGGATACATCTTCGAAAAAATATATTGATTTGAAAGCAGACCTAATCAGAACAGAGAGGCATCTTTTAAAAGAGATGGGTTTTATCTGCCATGTCGAGCATCCTCATAAATTTATATCAAACTACCTTGCAACTCTTGAAACACCTGCAGAATTGAGACAAGAAGCTTGGAACCTTGCAAATGACAGTTTGCGCACAACACTC</genome_strand>
        <mrna_strand>ACCTCAAGCTGTAATGGCCACTGGCCAAGTGTTATTTCATCGCTTTTACTGCAAGAAATCATTTGCCCGTTTTAATGTGAAGAGGGTTGCTGCTAGTTGTGTTTGGCTTGCATCAAAACTTGAAGAAAGTCCGAGAAAAGCAAGGCAGGTGCTTGTTGTTTTCCACAGAATGGAATGTAGGAGAGAAAACTTACCTATAGAACATCTGGATACATCTTCGAAGAAATATGTTGATTTGAAAGCAGACCTAATCAGAACAGAGAGGCATCTGTTAAAAGAGATGGGTTTCATCTGCCATGTCGAGCATCCTCATAAATTTATATCAAACTACCTTGCAACTCTTGAAACACCTGCAGAGTTGAGACAAGAAGCTTGGAATCTTGCAAATGACAGTTTGCGCACAACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314915" ref_strand="+" ref_description="SGN-E314915 [cTOA-31-G10]">
      <seq>tgtttggcttgcatcttaacttgaagaaagtcccagaaaagcaaggcaggtgcttgttgttttccacaaaatggaatgtatgagagaaaacttacctatacaacatctggatacatcttctaagaaatatgttgatttgaaagcatacctaatcagaacagagaggcatctgttaaaagagatgggtttcatctgccatgtcgagcatcctcataaatttatatcaaactaccttgcaactcttgaaacacctgcatagctgagacaataagcttggaatcttgcaaatgacagtttgcgcacaacactctgtgtaagattcaagagtgatgttgtggcctgtggagttgtatatgctgctgcccgtagatttcgagtgcccctccctgagtatcctccttggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="26638" stop="27641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26938" g_stop="27341" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E314915" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26938" e_stop="27341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGGCTTGCATCAGAACTCAAAG-AAGCCCGAGAAAAGCAACGCAGGTGTTTGTTGTTTTCCACAGAATGGAATATAAGAGAGAAAACTTACCTGTAGAACATCTGGATACATCTTCGAAAAAATATATTGATTTGAAAGCAGACCTAATCAGAACAGAGAGGCATCTTTTAAAAGAGATGGGTTTTATCTGCCATGTCGAGCATCCTCATAAATTTATATCAAACTACCTTGCAACTCTTGAAACACCTGCAGAATTGAGACAAGAAGCTTGGAACCTTGCAAATGACAGTTTGCGCACAACACTCGGTGTAAGA-TCAAGAATGAGGTTGTGGCCTGTGGAGTTGTATATGCTGCAGCCCGTAGATTTCAAGTGACCCTCCCAGAGAATCCTCCTTGGTGG</genome_strand>
        <mrna_strand>TGTTTGGCTTGCATCTTAACTTGAAGAAAGTCCCAGAAAAGCAAGGCAGGTGCTTGTTGTTTTCCACAAAATGGAATGTATGAGAGAAAACTTACCTATACAACATCTGGATACATCTTCTAAGAAATATGTTGATTTGAAAGCATACCTAATCAGAACAGAGAGGCATCTGTTAAAAGAGATGGGTTTCATCTGCCATGTCGAGCATCCTCATAAATTTATATCAAACTACCTTGCAACTCTTGAAACACCTGCATAGCTGAGACAATAAGCTTGGAATCTTGCAAATGACAGTTTGCGCACAACACTCTGTGTAAGATTCAAGAGTGATGTTGTGGCCTGTGGAGTTGTATATGCTGCTGCCCGTAGATTTCGAGTGCCCCTCCCTGAGTATCCTCCTTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719717" ref_strand="+" ref_description="SGN-E719717 [FC08CG06]">
      <seq>gggcgattggcggccaatcggccgaattgaagaaatcgaagtttccagattcagacctcaccggcgctgcctccgcatctggcgacgtcgttctcactgacaccggcgttaagtttgatcggaagttaatattcgacaccgagtcatgcctaaagtgaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactccaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgcgaggctttgtggcctattttcaaaattgctcatcaaaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaaagcctggttatgagcgtctctgctgtttgaggtgcatgcaaccgcgggatcacaactttcaaacaacctgtgtctgtcgagttccacagcatctaagggaggagaaggttatagaatgtgtccattgcggctgtaaaggttgtgcaagcggcgattgacctgttccttagaatcagaaaatgcattgttttagatgttattgtacttgtagtaaacctctgtctattcaaagcactgatcaaacgatatctagcacatcacgatcagttaaaacgctagaggcaatgtttgatgagataacaattatgattgcggtacctgttgtgaactgcgtaaccatagcgttaaaatactttggatattcttgtttgcaagtaatcatatgttacagctatattaggatacatatttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32446" stop="28604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32138" g_stop="32030" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="141" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="29897" i_length="2133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="239" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="427" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29316" g_stop="28904" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="840" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E719717" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32138" e_stop="32030"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="28904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGAAGTTTCCAGATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAAACGATATCTAGCACATCACGATCAGTTAAAACGCTAGAGGCAATGTTTGATGAGATAACAATTATGATTGCGGTACCTGTTGTGAACTGCGTAACCATAGCGTTAAAATACTTTGGATATTCTTGTTTGCAAGTAATCATATGTTACAGCTATATTAGGATACATATTTGTGA</genome_strand>
        <mrna_strand>AAATCGAAGTTTCCAGATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAAAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAAACGATATCTAGCACATCACGATCAGTTAAAACGCTAGAGGCAATGTTTGATGAGATAACAATTATGATTGCGGTACCTGTTGTGAACTGCGTAACCATAGCGTTAAAATACTTTGGATATTCTTGTTTGCAAGTAATCATATGTTACAGCTATATTAGGATACATATTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585986" ref_strand="+" ref_description="SGN-E585986 [68452]">
      <seq>gtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgaaaatgatcctcatgatggcaaaagaaaatgtgaagctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaaagcctggttatgaacgtctctgctgtttgaggtgcatgcaaccgcgggatcacaactttcaaacaacctgtgtctgccgagttccacagcatctaagggaggagaaggttatagaatgtgtccattgcggctgtaaaggttgtgcaagcggagattgacctgttccttagaatcagcaagtacattgttttagatgttattgtacttgtagtaaacctccgtctattcaaagcactgatcaaacgatgtctagcacatcatggtcagtaatatgctagaggcagtgtttgatgagataccaattatgattgcagtacctactgtaaactgtgtaacctatttatcgcaaactacttaacttgcgttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="30168" stop="28679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29868" g_stop="29799" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="258" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29316" g_stop="28981" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="593" r_length="335" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E585986" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29868" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="28981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAAACGATATCTAGCACATCACGATCAGTTAAAACGCTAGAGGCAATGTTTGATGAGATAACAATTATGATTGCGGTACCTGTTGTGAACTGCGTAACC</genome_strand>
        <mrna_strand>GTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGAAAATGATCCTCATGATGGCAAAAGAAAATGTGAAGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAACGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGCCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGAGATTGACCTGTTCCTTAGAATCAGCAAGTACATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCCGTCTATTCAAAGCACTGATCAAACGATGTCTAGCACATCATGGTCAG-TAATATGCTAGAGGCAGTGTTTGATGAGATACCAATTATGATTGCAGTACCTACTGTAAACTGTGTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618773" ref_strand="+" ref_description="SGN-E618773 [69455]">
      <seq>tgttcagacctcaccggagcttcctccgcctctgacgacgtcgtcttcactgccaccgtcgttaagtttgatcggaagttaatattcgacaccgctaaggtcatgcctaaagtaaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgtgaagctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaaagcctggttatgaacgtctctgctgtttgaggtgcatgcaaccgcgggatcacaactttcaaacaacctgtgtctgccgagttccacagcatctaagggaggagaacggttatagaatgtgtccattgcggctgtaaaggttgtgcaagcggagattgacctgttccttagtgcattgtttagatgttattgtacttgtagtaaacctccgtctattcaaagcactaatcaagacgatgttctagcacatcacggtcagttacaaatgcttagaggcagtgttttgatgagaataaccaattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32421" stop="28710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32123" g_stop="32030" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="31518" i_length="512">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31517" g_stop="31513" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="99" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31512" i_stop="29897" i_length="1616">
            <donor d_prob="0.660" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="196" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="384" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29316" g_stop="29010" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="688" r_length="304" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E618773" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32123" e_stop="32030"/>
          <exon e_start="31517" e_stop="31513"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="29010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAA-GGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAA-ACGAT-ATCTAGCACATCACGATCAGTTA-AAACGC-TAGAGGCAATG-TTTGATGAG-ATAA-CAATTATGA</genome_strand>
        <mrna_strand>TGTTCAGACCTCACCGGAGCTTCCTCCGCCTCTGACGACGTCGTCTTCACTGCCACCGTCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GTCATGCCTAAAGTAAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGTGAAGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAACGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGCCGAGTTCCACAGCATCTAAGGGAGGAGAACGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGAGATTGACCTGTTCC-T----T-AG----TGCATTG-TTTAGATGTTATTGTACTTGTAGTAAACCTCCGTCTATTCAAAGCACTAATCAAGACGATGTTCTAGCACATCACGGTCAGTTACAAATGCTTAGAGGCAGTGTTTTGATGAGAATAACCAATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458839" ref_strand="+" ref_description="SGN-E458839 [cPRO-32-F17]">
      <seq>gattcctccgcctctgacgacgtcgtcttcactgtcaccgtcgttaagtttgatcggaagttaatattcgacaccgtttgctgttttattttctcacgatcatcctgcgtcggatacttttcttttgagccaagagtccgtcggaaacaacctccttaccccacaagtgtagggtgcatcctatcatcgctggaccccacagggattaattggctaaggtcatgcctaaagtaaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgcgaggctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaaagcctggttatgaacgtctctgctgtttgaggtgcatgcaaccgcgggatcacaactttcaaacaacctgtgtctgccgagttccacagcatctgagggaggagaaggttatagaatgtgtccattgcggctgtaaaggttgtgcaagcggagattgacctgttccttagaatcagcaagtgcattgttttagatgttattgtacttgtaaacctccgtctattcaaagcactgatcaaacgatgtctagcacatcacggtcagtaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32405" stop="28744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32105" g_stop="32030" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="30623" i_length="1407">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30622" g_stop="30481" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="217" r_length="141" r_score="0.789"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30480" i_stop="29897" i_length="584">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="315" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="503" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29316" g_stop="29044" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="772" r_length="269" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E458839" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32105" e_stop="32030"/>
          <exon e_start="30622" e_stop="30481"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="29044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAAACGATATCTAGCACATCACGATCAGTTAAAACG</genome_strand>
        <mrna_strand>GATTCCTCCGCCTCTGACGACGTCGTCTTCACTGTCACCGTCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTTATTTTCTCACGATCATCC-TGCGTCGGATACTTTTCTTTTGAGCCAAGAGTCCGTCGGAAACAACCTCCTTACCCCACAAGTGTAGGGTGCATCCTATCATCGCTGGACCCCACAGGGATTAATTGGCTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCCTAAAGTAAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAACGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGCCGAGTTCCACAGCATCTGAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGAGATTGACCTGTTCCTTAGAATCAGCAAGTGCATTGTTTTAGATGTTATTGTAC-T-T-GTAAACCTCCGTCTATTCAAAGCACTGATCAAACGATGTCTAGCACATCACGGTCAG-TAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460132" ref_strand="+" ref_description="SGN-E460132 [cPRO-30-C23]">
      <seq>gattcctccgcctctgacgacgtcgtcttcactgtcaccgtcgttaagtttgatcggaagttaatattcgacaccgtttgctgttttattttctcacgatcatcctgcgtcggatacttttcttttgagccaagagtccgtcggaaacaacctccttaccccacaagtgtagggtgcatcctatcatcgctggaccccacagggattaattggctaaggtcatgcctaaagtaaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgcgaggctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaaagcctggttatgaacgtctctgctgtttgaggtgcatgcaaccgcgggatcacaactttcaaacaacctgtgtctgccgagttccacagcatctgatggacgagaatgttatagaatgtgtccattgcggctgtaaagggtgtgcaagcggagattgacctgttccttagaatcagcaagtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32405" stop="28833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32105" g_stop="32030" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="30623" i_length="1407">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30622" g_stop="30481" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="217" r_length="141" r_score="0.789"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30480" i_stop="29897" i_length="584">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="315" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="503" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29316" g_stop="29133" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="687" r_length="184" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E460132" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32105" e_stop="32030"/>
          <exon e_start="30622" e_stop="30481"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="29133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATT</genome_strand>
        <mrna_strand>GATTCCTCCGCCTCTGACGACGTCGTCTTCACTGTCACCGTCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTTATTTTCTCACGATCATCC-TGCGTCGGATACTTTTCTTTTGAGCCAAGAGTCCGTCGGAAACAACCTCCTTACCCCACAAGTGTAGGGTGCATCCTATCATCGCTGGACCCCACAGGGATTAATTGGCTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCCTAAAGTAAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAACGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGCCGAGTTCCACAGCATCTGATGGACGAGAATGTTATAGAATGTGTCCATTGCGGCTGTAAAGGGTGTGCAAGCGGAGATTGACCTGTTCCTTAGAATCAGCAAGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409238" ref_strand="+" ref_description="SGN-E409238 [PPI-13-D7]">
      <seq>ttcagacctcaccggagattcctccgcctctgacgacgtcgtcttcactgtcaccgtcgttaagtttgatcggaagttaatattcgacaccgtttgctgttttattttctcacgatcatcctgcgtcggatacttttcttttgagccaagagtccgtcggaaacaacctccttaccccacaagtgtagggtgcatcctatcatcgctggaccccacagggattaattggctaaggtcatgcctaaagtaaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgcgaggctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaagcctggttatgaacgtctctgctgtttgaggtgcatgcaaccgcgggatcacnactttcaaacaacctgtgtctgccgagttcacagcatctgaagggaggagaagttatagaatgtgtccattgcggctgtaaaggtgtgccagcggagattgacctgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32421" stop="28852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32121" g_stop="32030" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="30623" i_length="1407">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30622" g_stop="30481" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="233" r_length="141" r_score="0.789"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30480" i_stop="29897" i_length="584">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="331" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="518" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29316" g_stop="29152" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="681" r_length="163" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E409238" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32121" e_stop="32030"/>
          <exon e_start="30622" e_stop="30481"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="29152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCT-AAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCT</genome_strand>
        <mrna_strand>TTCAGACCTCACCGGAGATTCCTCCGCCTCTGACGACGTCGTCTTCACTGTCACCGTCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTTATTTTCTCACGATCATCC-TGCGTCGGATACTTTTCTTTTGAGCCAAGAGTCCGTCGGAAACAACCTCCTTACCCCACAAGTGTAGGGTGCATCCTATCATCGCTGGACCCCACAGGGATTAATTGGCTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCCTAAAGTAAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGG-AAAAG............................................................................................................................................................................................CCTGGTTATGAACGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACNACTTTCAAACAACCTGTGTCTGCCGAGTT-CACAGCATCTGAAGGGAGGAGAA-GTTATAGAATGTGTCCATTGCGGCTGTAAAGG-TGTGCCAGCGGAGATTGACCTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464004" ref_strand="+" ref_description="SGN-E464004 [cPRO-16-N7]">
      <seq>gattcctccgcctctgacgacgtcgtcttcactgtcaccgtcgttaagtttgatcggaagttaatattcgacaccgtttgctgttttattttctcacgatcatcctgcgtcggatacttttcttttgagccaagagtccgtcggaaacaacctccttaccccacaagtgtagggtgcatcctatcatcgctggaccccacagggattaattggctaaggtcatgcctaaagtaaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgcgaggctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcngaatttgattgcgaaatggaaaaagcctggttatgaacgtctctgctggttgaggtgcatgcaaccgcgggatcacnactttcaaaacacctgtgtctgccgagttccacagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32405" stop="28925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32105" g_stop="32030" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="30623" i_length="1407">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30622" g_stop="30481" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="217" r_length="141" r_score="0.789"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30480" i_stop="29897" i_length="584">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="315" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="503" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29316" g_stop="29225" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="595" r_length="92" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E464004" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32105" e_stop="32030"/>
          <exon e_start="30622" e_stop="30481"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="29225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCT</genome_strand>
        <mrna_strand>GATTCCTCCGCCTCTGACGACGTCGTCTTCACTGTCACCGTCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTTATTTTCTCACGATCATCC-TGCGTCGGATACTTTTCTTTTGAGCCAAGAGTCCGTCGGAAACAACCTCCTTACCCCACAAGTGTAGGGTGCATCCTATCATCGCTGGACCCCACAGGGATTAATTGGCTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCCTAAAGTAAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCNGAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAACGTCTCTGCTGGTTGAGGTGCATGCAACCGCGGGATCACNACTTTCAAAACACCTGTGTCTGCCGAGTTCCACAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460287" ref_strand="+" ref_description="SGN-E460287 [cPRO-30-D23]">
      <seq>gattcctccgcctctgacgacgtcgtcttcactgtcaccgtcgttaagtttgatcggaagttaatattcgacaccgtttgctgttttattttctcacgatcatcctgcgtcggatacttttcttttgagccaagagtccgtcggaaacaacctccttaccccacaagtgtagggtgcatcctatcatcgctggaccccacagggattaattggctaaggtcatgcctaaagtaaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgcgaggctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaaagcctggttatgaacgtctctgctgtttgaggtgcatgcaaccgcgggatcacaactttcaaacaacctgtgtctgccgagttccacagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32405" stop="28925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32105" g_stop="32030" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="30623" i_length="1407">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30622" g_stop="30481" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="217" r_length="141" r_score="0.789"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30480" i_stop="29897" i_length="584">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="315" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="503" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29316" g_stop="29225" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="595" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E460287" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32105" e_stop="32030"/>
          <exon e_start="30622" e_stop="30481"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="29225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCT</genome_strand>
        <mrna_strand>GATTCCTCCGCCTCTGACGACGTCGTCTTCACTGTCACCGTCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTTATTTTCTCACGATCATCC-TGCGTCGGATACTTTTCTTTTGAGCCAAGAGTCCGTCGGAAACAACCTCCTTACCCCACAAGTGTAGGGTGCATCCTATCATCGCTGGACCCCACAGGGATTAATTGGCTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCCTAAAGTAAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAACGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGCCGAGTTCCACAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334794" ref_strand="+" ref_description="SGN-E334794 [cTOE-3-H12]">
      <seq>ctgcctccgcatctggcgacgtcgttctcactgacaccggcgttaagtttgatcggaagttaatattcgacaccgagtcatgcctaaagtgaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactccaagcaaaaatgagggaagctgagaatgatcctcatgatggcaaaagaaaatgcgaggctttgtggcctattttcaaaattgctcatcagaagagccggtatatttttgatctctttcacaggaggaaagagatctccaaggaattatatgagttttgcatggatcaaggatatgctgatcgaaatttgattgcgaaatggaaaaagcctggttatgagcgtctctgctgtttgaggtgcatgcaaccgcgggatcacaactttcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32404" stop="28955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32104" g_stop="32030" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="29897" i_length="2133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="173" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29692" g_stop="29505" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="361" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29316" g_stop="29255" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="423" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E334794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32104" e_stop="32030"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29505"/>
          <exon e_start="29316" e_stop="29255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAGGTATGTTCATCCTCTCTGCTTCAGTTCTTGCGAAATGGAAAAAGCAGCATATGTCAATGTGTATCTCTTCTTTTTGAATGTATTTCTGTTTTGCCTCTTGTTTAGTACATTTCTCCTGTGTGTGGGTGGGGGTTCCATAGTTGTGTATACTTTGGCACAATCTTTATGGTTTTGCCTTTGAATTACAGCCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAAC</genome_strand>
        <mrna_strand>CTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG............................................................................................................................................................................................CCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324700" ref_strand="+" ref_description="SGN-E324700 [cTOC-8-E14]">
      <seq>gattcagacctcaccggcgctgcctccgcatctggcgacgtcgttctcactgacaccggcgttaagtttgatcggaagttaatattcgacaccgagtcatgcctaaagtgaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactccaagcaaaaatgagggaagctgagaatgatcctcatgatggcgaaagaaaatgcgacgctttgtggcctattttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32423" stop="29333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32123" g_stop="32030" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="29897" i_length="2133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="192" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29692" g_stop="29633" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="252" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E324700" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32123" e_stop="32030"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAA</genome_strand>
        <mrna_strand>GATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAG..........................................................................................................CTGAGAATGATCCTCATGATGGCGAAAGAAAATGCGACGCTTTGTGGCCTATTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608868" ref_strand="+" ref_description="SGN-E608868 [24864]">
      <seq>cagattcagacctcaccggagatcctccgctctgacgacgtcgtcttcactgtcaccgtcgttaagtttgatcggaagttaatattcgacaccgctaaggtcatgcctaaagtaaaaacaaaccgtgtcaaatatccagagggatgggagttgattgaacctactcttagtgaactacaagcaaaaatgagggaagctgaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="32425" stop="29497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32125" g_stop="32030" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32029" i_stop="31518" i_length="512">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31517" g_stop="31513" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="99" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31512" i_stop="29897" i_length="1616">
            <donor d_prob="0.660" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29896" g_stop="29799" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="196" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29681" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="207" r_length="11" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E608868" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32125" e_stop="32030"/>
          <exon e_start="31517" e_stop="31513"/>
          <exon e_start="29896" e_stop="29799"/>
          <exon e_start="29692" e_stop="29681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCGGTAAGTTGCTTTTGTGTTATTTGAACAGTTAAAGTGTCCTTTTGCTTATTATATTTGGTTAATTCGTTAAGCTTTTAATAAGTTCTTTTGTATTCGATTATCTCACAATGTGTGCTGGATTTGAGAATTGTGTTACAGGAATTTAGTTTAAATTTTCTGAAATTCGAAAGTAACATTGTATTTGTTGCATCTAATTATAGTGAAAAAAAAGTTAATTGCAATTACTGCTGAGTTTGTGTATAATTTGTTTTATGAGAATTTGGGCGTGATTATGTTACTGTTGCAAGACTCGAAAGAAACCCTAAATTGCAATTTTAATGTATAATTTGGTTTATGAGATTTTGGGCATGATTATGTTACTGTTGCAAGACTGAGAAATCATAATTTTTTTAAGAGACAAATGATTTAGTATTGGAGTGAAAAATGCACAAACAATTCACGGTTGTGTAGTCAGCGTGAAAAGGCACAAGCCCTAGTGCGAGGCTTAAAATGTGTTGAGCGTCATCGAGGTTCTAAGGCATACTTTTCCTTGCCAATGAACCTCGTATAAAGGGGCGACACTAAGTCACACCCTTCAGTGCAAAACTGTACTCTCGGTTTTCCTTAGGGCAAGTAAAGAGTTATCCTATATATCGTACAAGTTTCTGATGAAACAACAAAACCAAAACCCACGGTGCATTGTGAAGCAAAAGTTGAGACAATATATTTATCATCAGTGTCTGTATATTTCGTTATTTTGATGCGATATTTGTGTACTGCCACAGTTGACGTTAAACGTCAATAACTGAGGCAATAGGAAGCAGAAATGAGCTTGAATAAATAACAAGTTAGAGAGGTGTAACAAGATTGGGTTCTAAGGGATGGAGACAATTGCAAGTGATGGATGAGATATGTGAAGAGATTGGGAGATTAGAGATACATGGTCGATTTTGTTTGTAGTTTTTTTTTTCTTTTTCGTATTTCAGTTTAGCTGTCACTGTCAAGCACTTGGTTTTCTTGTTGGTTTTTAACCAAAGTTTATAAAGAGCTTCTGCTGGCCTCCTTAAGGCTAATCTCTTTTTTTTTAAAAAAAAAAATTCTATCAGCCCAACCAAATTCCCTATCCTCACACATCTGACGCCCAAGCTTGGGTGACCAAAGCCTAAAGTAAACTACACTTGCTGAGGCCCTTCAGTTTAGTGTTGCTGCTGCGCTGTAGCTACTCTGATACCAGTTTGGTTGCTAGGTTGTTCACACTCAGCTTTGCTAACATGACATGATAATTTGTGTTAATGGCACTGCTGCTAATTTGTGGGAGAGGTAGCGGGCTAGCCTCTTCCTCTCCTTTTTAGTAGTGCTATTTAATTATCTCGCAGTTTCTTGTACTTGAGTGTGTATTACTACATGTTGATGTACTTTTTTTGTATCTTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTATGTTGTTGTGGGCAGTTTTGCTAAAATTCTTATTATGACCTATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATATGTCATCATTATATTTTTGTGAAGAACTTGTTTTATCAAGTTCTTTTAATTGGTAAAAATTTTATAATATTGTTATTATCTTTTCCTAGGGGTATTATTACAACCAAAACTTATCGTCATGTTAATTACAAGTACTGATGGCTCACAGTTCACAGAATATTTTCTTTGTACTCCCGTGTAGCCACTTTACCTAGTTGTTAAACGTCTTTGCTCTGTGTATTTGGCAACAAGAGAAAGAAACAAAAGAAGAACTGAAAGAGATATCAGCCAGCATATATTTCTTCTATGATATCACCTGCAATCATGAGCACTTGTTTCTTCTTTCCCGTCGTGAACAAATTCCCTTTCAATTGTAATTTTCTTGAATTTGTAACACATAATTCAGTATGATGGCCCTGAAATTTAAGCATGAAACACCAAGCATAAAAACCTGCTCGTGTAAGTCGAAAGTTGAGTTAAATTTGTTGGTTATGTTTTACATTTATGTCTGTTTGGTGCAGAGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAGGTATTGTCATAAAATCAATTTTTGTGCTTATTGTTTTTATGTAGTCAAAATGATGTCACCTCGTAATGTTGATATGAATTTTATTGTTGTTTGGCTGCTGGTACAGCTGAGAATGATC</genome_strand>
        <mrna_strand>CAGATTCAGACCTCACCGGAGAT-CCTCCGC-TCTGACGACGTCGTCTTCACTGTCACCGTCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GTCATGCCTAAAGTAAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTACAAGCAAAAATGAGGGAAG..........................................................................................................CTGA-AATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="45103" stop="46429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45402" g_stop="46129" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45402" e_stop="46129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTACGTTTGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATTCCAAATCTTGATAAAAACCTAATCTCTTGTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAAGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACAC--GTAGA-T--T---TA-G-GGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="45103" stop="46101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45402" g_stop="45802" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45402" e_stop="45802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTACGTTTGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATTCCAAATCTTGATAAAAACCTAATCTCTTGTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAAGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="-" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>atcaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="46511" stop="45558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46211" g_stop="46018" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46017" i_stop="45901" i_length="117">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45900" g_stop="45858" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="239" r_length="44" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46211" e_stop="46018"/>
          <exon e_start="45900" e_stop="45858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTTAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTATCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACAC-CCGATCCCCTAAATCTATGTGTCGGTTCGTGA</genome_strand>
        <mrna_strand>ATCAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG.....................................................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="-" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>agtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaacacgatggcacgtttgctgcactccacaaataaacaagaagagaacataaaagtaggggtcagtacaaaacacgggtactgagtagatatcatcggccaactcaaaatagaaatcaatatatataccaagtaatatcataaaatcaactatgatactcaacatgtagcaacaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="46755" stop="45559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46455" g_stop="46018" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46017" i_stop="45901" i_length="117">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45900" g_stop="45859" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="481" r_length="43" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46455" e_stop="46018"/>
          <exon e_start="45900" e_stop="45859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTGACGAAGACTGGCTAGAATTACTGTTGAGTTGAGGACGACGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAAACACGGGTACTCAGTAGATATCATCGGCCAACTCAAAATAGAAA-AACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTTAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTATCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACAC-CCGATCCCCTAAATCTATGTGTCGGTTCGTG</genome_strand>
        <mrna_strand>AGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGT-AGTAAGACTGGCTTGAATTACTGTTGAGTTGAACACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAGAACATAAAAGTA-GGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG.....................................................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578053" ref_strand="-" ref_description="SGN-E578053 [LE08DD03]">
      <seq>tgcatctttgggattccgtcagtcccagagatctgcatcagttgccgcatctgcgtcagtgcgaagtattcccgcagatgatgagaatgtggaatctccttcaagtgatgaagatgccaaacaggacactaccgttattgacgaaagctcagatgatgataagacggttcaggccaaaggacgcaaaagggctgctccaaggggaaggagtataggttcagcaacaacggctaaaaggggaagaaaaccagatagctcctcatcttcacttcaaaggatgctcatggatgttaatgaagatgacgatgacgatgatgatgacatgacaaagaaagagaataaacctcgacctcgggcaactaggaattatggtgctttaaggaggtgactgtaccatttgtttcattcagggatgttgattatgatgaccaaatttgcctagtgagttgtaaatacactagtaagttacagagtgttttcggtttcaactccagtgttttatttcgtatttgtcaatgttgatacgcggagagtaggtctttttttttttagtatgcattgattataccgatggcttcaattttggccattccatttgctttaatgaacaatgacatgggtatgtttcttgtgtgtggtatataaaagtggaaatgttgctacgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="-" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="67606" stop="6623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67306" g_stop="67277" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67276" i_stop="66777" i_length="500">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66776" g_stop="66656" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="151" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66655" i_stop="65930" i_length="726">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65929" g_stop="65726" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="355" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65725" i_stop="65093" i_length="633">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65092" g_stop="64783" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="665" r_length="310" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64782" i_stop="64316" i_length="467">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64315" g_stop="64291" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="690" r_length="25" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="-" ref_id="SGN-E578053" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578053" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67306" e_stop="67277"/>
          <exon e_start="66776" e_stop="66656"/>
          <exon e_start="65929" e_stop="65726"/>
          <exon e_start="65092" e_stop="64783"/>
          <exon e_start="64315" e_stop="64291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCTCTGGGATTCCGTCAGTCACAGAGGTTTATCCTAGATTCCTAGAAGTGATGCTCCAGTTTAACGTTTATTTGTCCTGATATTGTCTTCTTTACATATATTCCAATTTGACTATAGTTTTCACATGCAGAGGTTTTTGCTTTGGGTTGTGCTTGTATCTTACTTTCTTTTGCATCGAAAGGTTTCCTATGTGGCTTGTTGCTATTAAGCATCAAGTATTATAAAGTTCCATTATATCTATATTCTCTACTGCTTTTCTTAAATAAGCAAATAGATAACACTGATTTTGCTTTGATCAGTGCAAATACGCAATTATAGTGACTACTTCTGACAGTTTTGGTGTTTTAACATTTTGGTGTTTTATTGTGTTTTTTTTTTCAATTACTATATAAACTTAAACTTTCATCAATAATTTACTAAACAGTTTGCATCTAATTTAGAATTTGCTATAATTTTAGGTAATGTAACCATTGTTTGCAGTTACTCCATGTCATAGAAGTCCTTTACATAGAGTTTGTTGCTGCAGATCTGCATCAGTTGCCGCATCTGCGTCAGTGCGAAGTATTGCCGCAGATGATGAGAATGTGGAATCTCCTTCAAGTGATGAAGATGCCAAACAGGACACTACCGTTATTGACGAAAGCTCAGTATGTCCGATCTTCCTTATTGTGTATATTTCTTGCCCAAGCACTTCCCTTCCTGGTCTAGAACGATGTGTTAGGGAAGGGAAAAAAGAAAATTGGAAACAAGTAAAGGCATTTAGCTTGCACACAAATTAATTGCAGTCTTATGTGAGCATTATTTGCGTTTTGTACAATCAACGGCAGCATTCTGCACACTGCCTACGAATGGAAAGCAAAAGACTGGAAGTGTTAGAAATGGCAATAAAAAACCTTAGCATGAGTTGATGACTACTAAATTCTACCTCTCCTTTCGTAGCCTGAGAATTGAAGTTAGAAATTCCAAACGTGAATGAAAGAACCTAAAATTCGAGTAAGAAGGAAGGCAATAGATGTCTGTTCTATTTACTGATGATCTGTGGAGACACTCACTCTTAGTCCTCATTTGCACCTCTAACTGTGGTGCTTCAGCCGCCTATTATGTGATGATCACTTTTGCATTGAGTTAGGAATTAGGAGTTCCAGTTGCTTTTTACTATTGATGAATGTAATATTGATCAGTGCTGTAACAGAAAACATCACCACTTCAGTTTGAATCTATTTACCCCTGTGAAATTTTCTTGGATGTGTGCATGCAAATTGCAAAAGCTGGTTGGTGAAAAGTTTTTCTTAGACATATCATAATTTTCTGTCTCACTTCCTCCTGCTGTATGCTACATAATCGCGCCTTTATGTGCTGTCTCCTGTTGCTAGGATGATGATAAGACGGTTCAGGCCAAAGGACGCAAAAGGGCTGCTCCAAGGGGAAGGAGTAGAGGTTCAGCAACAGCGGCTAAAAGGGGAAGAAAACCAGATAGCTCCTCATCTTCACTTCAAAGGATGCTCATGGATGTTAATGAAGATGACGATGACGATGATGATGACATGACAAAGAAAGAGAATAAACCTCGACCTCGGGTAAGTGATGTATCAGAAAGTATATATAAATTGAATCATATATATGCTTTAAAGGCAATGCTTATAGTATGACAAATAAAATTTGAAACTTATTTCTTCTCCATACAATATGTTAATCACGTTGAAGTTGAATTTTGCTCTTTGCTTCTTCTGTGGTGTGCTTATAATTATGCTGCCTTCTTTATAGTTTATGTCTTTTTAATTATCTTTGTGAGAAACTCGGTCAAGCACATGCTTCTGCAATCTAATATTGTGGCTTGAGTCTATCTCATCATTATGCATGATTACCTGAATACGTTCAATCATTTCAAATGAAATTCCTAATCAGATTTTAGTGGCTCATTTTTTGAAGAAATAAATTGTAAACTATGTTATTGGAGAATTACTGAGTGATCAAAGTAAACTAAGATTTCATAAACTCTTGCTGTTTTCTTCCTTCTGAGTTCTGAGGTAAAGGAGACTTAGGCCCATGTTGACGAGAGATGCAATTGTTTTTAGGGAAACTACATATAAGGAACACACTTAAACTGTCTCTGCTTCCGTGAGCATTCGAAAAGTTGTGCATTTTACCTCACCTTACAAAGGTTGGTTTTCTAATTTGGACATGGCGTGCATAACTTATGTTCTTTGCAGGCAACTAGGAATTATGGTGCTTTAAGGAGGTGACTGTACCATTTGTTTCATTCAGGGATGTTGATTATGATGACCAAATTTGCCTAGTGAGTTGTAAATACACTAGTAAGTTACAGAGTGTTTTCGGTTTCAACTCCAGTGTTTTATTTCGTATTTGTCAATGTTGATACGCGGAGAGTAGGTCTTTTTTTTTTTAGTATGCATTGATTATACCGATGGCTTCAATTTTGGCCATTCCATTTGCTTTAATGAACAATGACATGGTTATGTTTCTTGTGTGTGGTATATAGAAGTGGAAATGTTGCTACGAGCTGTGATGAGTTTTGTTAGATGTTTTGAATACATTAGAATCTTCAATGCTGGTACTACAAAACCTCATATGAGAAATATATCACATTATTTCCAACACATATATGTAAAAACTTATTTCTTTGACTATAGTATTCAATTTTATCTCAGTACGTAGACTAGTGATATGATCTTGTGACAACTTAAGCCACAATAGATCTAAGTTCTTAATTCTAAAAGAATACAAGGTATGTCTCGATTTTTAATTTTTAATCTCTTTCTTGATATAATTCAATGTTAATTTTTCCTCTTTTTTTCCATTTTTTTTAAAGTTCTGATGTTTGATCTATTGAATTGTGGAATTTTGATTAGAGTTTTGTTGTGTTCCTCTAAAAGTTCTAATTTTTGACATCTTGATTAGTTGAATTATAGATCAAAATGTTTTTATTTTTTATTTTTGAGGTCTGAAATTTAAAGTTAATTGTGTAGATCTATATCTAATTAGAAAAAAAAA</genome_strand>
        <mrna_strand>TGCATCTTTGGGATTCCGTCAGTCCCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCATCAGTTGCCGCATCTGCGTCAGTGCGAAGTATTCCCGCAGATGATGAGAATGTGGAATCTCCTTCAAGTGATGAAGATGCCAAACAGGACACTACCGTTATTGACGAAAGCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATAAGACGGTTCAGGCCAAAGGACGCAAAAGGGCTGCTCCAAGGGGAAGGAGTATAGGTTCAGCAACAACGGCTAAAAGGGGAAGAAAACCAGATAGCTCCTCATCTTCACTTCAAAGGATGCTCATGGATGTTAATGAAGATGACGATGACGATGATGATGACATGACAAAGAAAGAGAATAAACCTCGACCTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGAATTATGGTGCTTTAAGGAGGTGACTGTACCATTTGTTTCATTCAGGGATGTTGATTATGATGACCAAATTTGCCTAGTGAGTTGTAAATACACTAGTAAGTTACAGAGTGTTTTCGGTTTCAACTCCAGTGTTTTATTTCGTATTTGTCAATGTTGATACGCGGAGAGTAGGTCTTTTTTTTTTTAGTATGCATTGATTATACCGATGGCTTCAATTTTGGCCATTCCATTTGCTTTAATGAACAATGACATGGGTATGTTTCTTGTGTGTGGTATATAAAAGTGGAAATGTTGCTACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335669" ref_strand="+" ref_description="SGN-E335669 [cTOE-8-G15]">
      <seq>tccaaaaactccttgtttttacattccaaagcttcgatctttctctctctgcattggacaaagttctagggtttcatcaacagcttcataaatggatagctcgtattgagcggcgatcgccgctagttattatctcggcgttcgattcctcctgctgtggaagatcgccattgattcatcatcatgttcgaagcacatgttctgcatttgcttcgaagatatcttggtgaatatgtccatggattgtcggcggaggctttgagaatcaccgtatggcaaagcgatgtggttctcaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="81263" stop="92767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81563" g_stop="81760" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81761" i_stop="88368" i_length="6608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88369" g_stop="88450" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="280" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88451" i_stop="92447" i_length="3997">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92448" g_stop="92467" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="300" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E335669" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81563" e_stop="81760"/>
          <exon e_start="88369" e_stop="88450"/>
          <exon e_start="92448" e_stop="92467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAACTCCTTGTTTTTACATTCCAAAGCTTCGATCTTTCTCTCTCTGCATTGGACAAAGTTCTAGGGTTTCATCAACAGCTTCATAAATGGATAGCTTGTATTGAGCGGTGATCGCCGCTAGTTATTATCTCGGCGTTCGATTCCTCCTGCTGTGGAAGATCGCCATTGATTCATCATCATGTTCGAAGCACATGTAAACAAACTCTCATTCTCACTCACTTCATTTTTGTTTTGTGTTGTGAATTGTTCAAACTTTGTACTGCATTCAATCCTCGTTAATTGGAGTTGTAGTTTTTAATTGATTAAAATTTGGAAATCATGAGGTGAATTAGTTTCAATCTATTTTTCTGAGTATGCATTTGAAGTAGTGTATATTTTCTTGTTCTCACTTTTTTGTTTGTTTTTTTATGAATTGTTCAAAGTTTGTACTGTATTTAATCCTCGTTAATTGAAGTTCTAGTTTTTTATTGATTAAAATTTGGAAATCATGAGGTGAATTAGTTTTCAGTCTATTTCTCTGAGTATGCATTCGAAGTAGTGGAACTTCTCTCATTCTCACTTTTTGTTTGTTTGTTTGTTTGTTATGGATTGTTCAAAGTTTGTTCTGTATTTAGTCCTCATTAATTGAAGTTCTAGTTTTTCATTGATTAAAATTTGGAAATCATGAGTTGAATTAGTTTCAGTCTATTTTCTGAGTATGCAGTTGAAGTAATGAATTTTTTTTAATGTCAGTCAGTAGACTACTATTTCTTATAGCTATTGTGTAATATGATCCTGTTAGTATGTTTGGCCAAATGGTAAAAAAATGTTTTTTTATCTAATCATGAAGCATTTATTTTAGAAAAGATGTTTGGCTGAACTTCTAGCAGAAAATTAGTACTTATGGGGAGTAGAATAAGCTCATAAGCTAAAAGAGTAGTTTCTTTTTCTGTCCAAAAATGCTTTTTTGAAAAACATTTTTGAGAAAAATGCACTTAGGAACCTTTGATAAAGCTTGGCCAAACAGGCAATGGGTTTACACCTCAGTATTTTTTATTTGTGTGTTGTTTAAGTTGTTCTCAGTTTTTATTTACTTGTCGTTAGTTGAATTCTTTCTGAAGTTCTAGGTTTTCTTGATTAAAATTTAGAAATCACGAGGTGAATTATTTCCACCCTATTTTCTGAATATACATTCGAAATAGTGGGTTCTTTTATGTGCCAATCAGAGGACTCCTATTTCCTCATAGCTATTGTGTTACATGCCTCCTAGTGCCTGGTTGGCCAGGCTTCTGGGAAGTCAAAAATGTTTATTTTTTTTCTTCTCAAAAGTTCTCATTTTAGAAATGTAAGTTGTTTGGCCGAGTTTTTGGGATTAAATACGTACTTGTAGAGAGTACTAGAAGTTCAAAGGCTAAAAAAGGTAGTTTTTCTGAAAAACACTTTTGAGAAAAGTATACTTCGAAGCACTTCGAAAAAGCTTGGCCAAGCATTAATTGCTGTTCAAAAGTGCCACTTCAAGGCACCAATCACCATTACAGTGACAAATAAATTAGAAAGGTTGCAACGGAAATTCTTTTGGGATGCGGTGGATGGGACTAGAAAATTTCACTTAGTTCGTTGGGAGATCGTGACATCTCCTAAATGGAGGGGAGTTCTTGGGGTCAAGGACTTGAAGTTTTTTGACAAAGCACTTTTGTATGAATGGTTGTGGAGATGCGTGGTGTACGGAGAATTTTTATGGATAAGGGTGATTGCTGATACTATATAATGTAATGGAAAGGGGGATGAATAACAAATATGATCACAATGCCTTTCAGGTGTGGTGTGTGGAGGAATAAAATGAAGGGGTGGGATGATTTTTCATAATACTACTTTTTAGGTTGGGGATTAGAGAAAAGTTAGACTTTTGGAGCAAAAGTGGTAGGGGGAAATGGTGCTTAAGGATGAATTTCTAGTGTTGTATAGAGTTTCTTTCCAAAGGGAGTTGTCTATTTAGCAAGTTGGGGCCTAGGGTACAGAAGGGGATGTGACCTTTCGGGATTTAAGATTTTATGTGACCTTTTAGAATTTGAGGGTCAGGAGGAATTTTCAAGGTTGGGAGTTGACCGAGCTTCAAAGAGTGCTAGATTTACTCCAAAACCAAGGTGATCCAATCGATAAGTTTGATGCCTTGAATTGGAAGCTCGAGAATTATAATTCGTTCTCTGTTAAGTTCTTCTATGAGATCCTTTTTTAGTTAGGACAAATCTTAGTTTTCCACTTGCCTTGGTCTAGGTTCCTAAGGTGCCAAGGTGTGCCTTTCCCCGCGGCTACTAGAGGGGTGATTTTGACGTTAGAGAATTTTAGGAAACGAAAAGTGGTTTAGTTGAGTTGGTGATTTCTTTGTTAGGAGATATGAGAGGATGTGGATTGTATTCTATTACATTGAAAATTAGTCTCAATGTTATAGGAGGATATCTTTAGATGGTTTGGTGTTTCTTGGATAATGCCATGATTCGTGATAGAGTTGATTTGAAGAATGGACATCGGAGAAGAAAGCACAAGGCTTGGAATGTCACTCCTCTTGCTCTAATGGGGATCATTCGGTAAATGAGGAATGATAGTTATAGGACTTTTGAAGGGGTACTATTTTGTATATAATTTTTTAAGATGGCCTTAAAATTAATTTTGGAAGCATTGGTAAGGGTAGTGGTGGTACTAATTGTACTTTTAATAAAGAAAAAAAGAGTTGAAATGATATTCAAAGTAAAAGCCATGTGTTTGTAGGGCATTTAGTATTTATGTGATTGATAAATAACATCTACAACTAATGTGATGTTTTGAGAAGTGGAGAAGTGGAAAAACACGTGCAAAGATAGCAAATGAGTTAAGTCAGTTGGAGGGAGTTTGAAGGGGTGCGAGCATCGAGTGTCAGAACAAAGAACGAGAGCTAGGAAAGAGGACATGAATAGAGTGTTAGCCTCGTTAGTGGTTGTGTAAGAGACTAGTTACGGGCAAAACTATGAAAGCATTATGGTTAATGACGAAATGCTAATATAAACTTTTTAAAACATGATAGATACAACAGATGGACATGATAGATTATGATGGAGCAAAATTAACAAAGGCAAAGACAGTGTGAACTCTGCATATAAGTTGCTAAACCAAGTTGGACTACAACTTTCTCATTGGCCTTGTAAGCAGATTTGAAAACCTAAAATCCCTTTCAAGGTGTCATGTTTCATTTGGCTTCTGACAAGAGAAGTAGTTTTAACACATGAAAACCTCAAGAAAAGGAAGTTCTCCATGTGATCTAGATGCTATTTATGTGGGAAGAGGTTTAGAGAAAATCAACCATTTGTTTCTTTTGCGTAGAATAACATCCAGTTATAACATCCCAGCAACTGTGGAGGATTTTCATTAGTCTTGGGAGTTTTGCTCAGGCTATGCTTAACAGAATCATATATCTTTTGTACAGTTGGGGAGAAGCAGGGGTGGTAGATGGAGATAGATGGAGGATTATCCCAGCTTGTATTTGGTGGAGTGTTTGGAAAGAAAGAAATGCTAGATGTTTTGAAAGCAAGAGTTGTGATCTTCAAAAGATCAAACTAAATTGCACTAGGCTTTTTTTTCTTTTGGTGTAAACATATGTATTTAGAGGACACTGAATCCATCGTAGATATCCTAGGTTCCAATTATGATTCAAATTTATTTTTCTTATTTTTTGAAGAGCTATACATATGGTTTTAGCGCAACCCATGCATTGGTTCAATGAATATACACAACTGTTACCTCCCCCCCACCCCCCCACCCCCAGAAAAGCTACAATGAGTAGAAAGAGGAGACTTTAATTCCTTGGAAGTGAATGGGAAGGAGGAAGATGGTAAAAAAAAAAGGGGGGGGGATTTAACTTGATAGGAGAAAAATTTAGGTGTGGTTGGGAAGTGCTACAGCGAGAGAGGGAGGTTGCGAAGTGATAAAGAGTTGTGTGAGATACAAGGCTAGGTACAAATGAATTTTTTTTCTTTCAATAATGTAGGATTACAATCAAAGGAGAGTTGAGGGAGACAATTGCAACATTCCAAGAAATTGGTGATCTTGCAAGAAGGTAAATGATAGAAATAGATGGGAAATTTCCCCGCAATCATTTGGTGGATAATACAGAAGGAGAGGCATCGTAGATTTTTTAAGAATGTAGAGAATAGTATGTGCAACAAGTCAAATTTAATTGTATTTTGACTGTGTACCACCAATTGTACTCTAATGATACTTCTCTACTCTCGATTATTGAAGTTTTAGACTTATTATAGGGTGTCCTTTGTAAATATGGTTTATGGGCTACCCATATACTGTTTATGATAGAAATAGATACGATTACCAATTTAAAAAACAACAAGGTAAATTTTATTAATAGCGGGCAAAGTCCATAAACAATACAAAAAGTACAGGTACCTCAATGGGCGCACCAAAAAGAAACTAGACATGATGCAAAGCTCTTTTGTTCCTCCCATCATATTATTCACATAAGAGCAAAGCTATATCACATGCTTTGGCCTTAGTGATAATTACATGTACAATATCATTTTTGACCCCTTTAAAAGCTTTCTTATTCCTCCCTCCACATAAGAGCTAGTGAAGTTACATCACATGCCCCGGGTCTTAGTGATTAATAATTGAAATCCTTGTTAAGACCACATTTCTTGATATTTAGGTTTATATGTATTATAATAGCACCTTATCATGTAAATGCAACGTGGACCCCAAAGCTACCATAAAAGGTGTGATTTTCACTTGGTTAGCCACAAGAGGAGCGACTTTGACCACGGAGAAATTGAAAAAGCGGAAGGTTGTATACACTAGCTGGTGTTACACGTGTAGGAGGCTGGTGAGGATGTGGATCACCTTTTCCTACATTGCTTCTTGACAATGAGTTTATGGTGGGATATGTTTGGCACTCCATGAGTGGTGCCAAAAAGGTGAAAAAAATTAGTGTCCAGTTGGAAGAGTGGGAGGAGAAGATGGGATTTGTGCTGAAATGGATCAAGTGGATAACATTTTGTATATCCTCAGTGAAATTCTCTGTTTTGATTAATGGTGCACCAACAAGATTCTTCAGAGCTCAAATGGGCCTCTGCCCCCTGAATCCTCTGTCCCCTTTTCTGTTTTTGCTAGTGACGGAAGGACTTAACAAGACAACTGACACAAATTGCTGGTTGAGAGGTTTTGATGTGGCCAACAATGGAAGGGAAAGTTTAGAGGTGACTCATTTGCAATATGCATTTGCAATATGCAGATGACAGACTCATCTTTTGTGGGGCAGAAGTAGAACAACTCAGATATCTGAGAGTAATATTGGTCCTGTTTGAAGGAATCTCTGGGATGCATATTAATTGGAGTAAGAGTTCTCTTTATCCCATTAATGAAGTACATAACATGGAGACACTACACATAATTCTTGATGGACAAGTTGGGGCTCTCAACTACATACCTTGGGATGCCTTTGGAGTTTGAGTGCTAAAATCAATGTCTGAAGTGATCAGGAGCAGTGTAATAGAGGAGTATGAGAAGAAACTGGCTAGATGGAAGGGGCAATACTTGTCTCTTGGAGGAAGATTTACTCTAATTAACTCAGTCATAGATGCTATGCCTACTTACATGATGTCTTTATTTCCTATTCCAGTGGGGGTCACAGGCAGATTGGACAGAATCAGAAGGAAGTTCTTATGGTAGGGAAACAAGGACATGGAAGTTTACAATCTGATAAAGTGGAATGATCTGATAATAGAAAAAAGTATGGAGGTTTGGGTATTAAAAATTTGCAGAATCGTAGCAAGGCCCTCAGAATGAAAGGGTTGTGGAAATATGCTACTGACAAACATCCGTTATGGAGAAAAGTTATCAAAGCCAAGTATGAAGAAGAAAATAGGTGGATGACGAAGGAAGTATTTTCCCCCCTATAAGTGAATCTGGGGAGTTCTACAAGGGCCTTGTGGGATGATTTAAAGATCAAAACCAAGGTTAAGGTTAAAAATGGGGAAAAGACAAGCTTCTGGGGAGATGACTGGCATGAGATGGGCCATGGGGATTCTGATATCTACACAGATATCCACAACTTAATGTTAAATCAACAAAGAACAATTACAGGAATGTGGACACCTGATAGATGGGAAATTAGTTTCAGAAGTAGAAGACAAGTACATGACTGGGAAATCATAAGAGTTGCAGAATTCCTTAAAACTGTTGGCCAGTTTAAGAGAGAAATTTATTATATTCACTTAATGATAATAGGTGAAATCTTTTCTAGTGACCGCACTTCTCAATGTTTTAGGATTATTATGTATATAAAAACAACACCTTAACAGGGAAAAAACAGTTGTAATTAGTTTATGGCTACTAGATATTTGAGAAACGGGTGTTGTTTCTCCCTGAGATTATAACTTGTGACTGATAAACCTTCATTTATTGACAAGAAGAGCAATTGGTCATCAAGCAGTAAGAACCGTAAAGTATGCAGTGGGCTAAAAAACCAAACAGTTTATGATATATCCACTCCTAACCACACTCTTGATGCTAAATGTCTTTTACGTTTATATAGCTGCCGTGATCTTTCCCCTGACACCTTTTTGGACTTTGTTAGTTCCTTATCTTTAGTATAGGGCACATTTAGTGAAACTGCATCTACTCGATGAATCACCTACTTCATAAATTTTTTAATGATTTTTAGTAAATTGTAAGTGATAGAATGAAAAGAAAAAGTACGTATAATGTCATGTTTAATCAGCCGTGCTTCTTTATCCTCATCTTTTGTATTAGCTTTTGAGAAATATTATATACATGGTGTAGGTTCTGCATTTGCTTCGAAGATATCTTGGTGAATATGTCCATGGATTGTCGGCGGAGGCTTTGAGAATCAGCGTATGGCAAGGTATATTCATATTTTCTCTTTCCTGTTTGGTATTTGAATTTCCAATTCAATTTGTTGTTACACATTATACAAGATTGTAGCTGAAAGGCTAGTGACTTTTTCTTCTCTGGTGAAAAATAGTAGTGTATTGGTTTGATGAGAAAAAATCAGTCTAAAAGGAAGATATTTCTAATTTCCATGTCACATGTGTACCATTTATAATATCCACTGCCTCGACTCCACTTTTTCCTTAGTCACTGATTTATCCTTGAGCTTTACAGCACCCTGTCCAACTTGATATAACTTCTTTAACTATGCATGTCTTCAGTCACTGAAGATGAAAATATCTCAGTATTTTCCACCACAAGCTAGACTCCAATTGGCAATGTAGAAGGAGATGATTCACGTTTCTCCCCATTATTTGCACATGAAGCACCAAGTGACGCATGTAATTCTCCGCTTCCTCAAATTATCAGCCATCAAAATCACCGCCTCATAGCTAGCCAAGTGAAAGAACAAACCTTTCTCGGCACTCTAGGGATCCATACCTATAAATGTGGGGAAACTGACTCCAAATGCACAAAAGTTTCTCATAAAAAGACTTGACAGGAAAAAGACGCCATTACTCCCATCTTCTCCACTGCATGCATCATGAGTTGCTTGTGTAACCAACTCAATCAACCTTCAGAACTTTGTGACCTCCTAAACCTCAAGTCCAGATGAACTTCTTTAAATTGTAGCCTTCATATCTGTTGGACTGACATCTTCTTTTGACATGAGATACTGTACTTATTAGGAGAAGTGTTTTTTTTAGAAGGAAAAGTGATGCTCAAAATGCCGTTTCCCTGCATCACATATGTCCCAAAAACTTACCTTACTCCTATTACCTACCCTAAATGATACGTTCCGCTAAAATCTTCTCATCCTTCCAAAATATTCCGCAAAAGTCCACATCCATAAAGAATAGTGATATTTTTATTCCTCCACTCCCCTTCCAAGATACCAGAATTCTAAGCAATCACCTCCCTCCGAAAAACATTTTATTCTGCCCGAAATTTCCACAACCCCTTCCAAGTTGCATGTTAAATTCCTTTAAACCTTTAATCCCAAGCCCACCCTAACACTTTGGTGTCTCGTCAGTATTGCAATTTACTAAGTGAAACTTCCTCTCCACACTGAATCATCCTATATAAAATCCCTCTAAATTTTTTGATCCTGGTTCCTTGTGCTTTCTCATTTTATCCAAGCTGGATAACAGTCTCGGATATGGAGCTGGAAAGCAGTCTGGAGAAAATACCCCATAAGGTATTTGATTATTATGGCAATTATTTCTAAGTAAGAAAGAGATGTAATATTATACCCAACACTATAACCCAAGACTACGTAGGAATTACTGGCCTGTTGGAACCTATCTGGTGGACTGGTCAGACACAAAAAAAGTGGTGGGAACACTATACTGGGTTGCATATGGAAGGAAAAAATAGCAGATAATTTGGAGGAATCCGCAATTCTACACAGACAATTAAGACGAGTTGTCTTTTCCCCCCACTTCTTGTGTAAAAAAGATTTTGTACAGTATGTCGACTCAATGTTAAATACATTATAGAATCCCTATAGTAGGATGTGGGGAGTATTTGATATTTTGTTTTTATGTAAGCTGAAAAGTTGACATAGCACAGTCTTTTGTGCTACATTTATAATATTGTTACCATTCTAAAGATACAATATTCAAGTAAAATAAATGTGGAAATGTATCAAACTAGATACATATTCTCTTGATATTCTAACAAATAGCAAAAATCTATGCAAGATACATACTATTGTCTAATACATACCCTTACATCATCTATTTTTAGATAGTAGAAAAGTTCATGAAGGATGCTCTCTCCAATTGGACACCTTGGACACTTAGAAGAAGGAATAGAAGTCGAAAAGTGTGGGATGTCGTAATGTTAGCACTCATTTGGGTTGTGTGGATTTTATAGAATGAGAGAAATATGAGAGCTTTTGTACGAATAGGGACCAACCTTATACATTTGGGGATTAGCCTCTCAATTCTAGTTTCTTTTTGGTGCATCCATGAGATTCATGTTTGTATAAAAACTTATGTGTCGTTCATAGAGAATCATTTATATATGAAGTAAAATAAAATAAAATAATTATTTCTCTACGAGAATCATATTATGTTGTAGGTTCTCTACTTTTTGATATACTTATCCTAAATGGGAAATTTACCCATTTATTATTATTTTTGTAATCAGGCAAATATTTCATCAAGTACAAGACCAAAATTGTCCGTATGCAAGAAGCATACCAAAAGGTGAATGAACATACATAACCATATGGTACTCTACAAAAGACGCCCAATCCTCTATACGACCCGGAATCCTCTATACGACCCGGAACTACATGGATGCACAATAAAAAAGGGGTCAGAGACTACTCCTCAACTACCCAAAACTCCATTCTATCCCTTAAAAGCCCTCCTGTTCAACTCTCTCCGGATGATCCACATCAATGCCATAGGAACATCATTCTACATCCTACACTTTCTCCTGCTTTTCTTCCAACTTTCCAGCAAAACAACAGGTCTTTATGGATTTCGCCATTGCCAAGACATAGCATACCAGCTAAATATGGTGGGTCAAAGTGGATTTTTCAAAAACTAATGCGGGGCGGGTTGCGGGTCTATGTGGTTTTATGAGGGTTCAAACTTAATTTTAACTTATTACATGTTATAAGAGTGATAAAACATTATTTATTCAAGATAGTGGGATAACCTCCATCTGCATCACAAAAAATCAGGGTGTCATCTGCAAGCAAAGATGAGAAACGATTAAGGAAATACCACCCCCAACCGCACCAATCAAACCCTTTATATGTCCAATCATCCTATCAAAGCCAATGAAGAGCATAGGTGATAAAGGATACCTTGCCTCAACTTCCATGATTTTTTTTTTAAAAATCATGTGGCTTACCATTCACCAACTCTGAGTAACGCACTGGGGGGTACTCATAAGCTGCTCCACTTTCTTCATTTCTCTGCAAACTCATCTTTAGCATAATGAATCGAGGAGCATCCAGCTTACATGGTCACAAGTGTTCCCAAGTGCTAGCTTGCACAACACTCATGACATACCCTGCTTCCTTTTCTAATCTACTACTTCATTTGCCATCAAAGCTGCATTCAAAATCTGTCTGCCTTCAACAAAAGCATTTTGTGAAGATGAAATCGTTTCATTCAAGACCTTCTTTATTAAATTATTAATTCTATATATGTGAAACTAAATGAACAAGTCTTATTTTTTGATTTTGGCCTTGAGCTCAATGAGGGGTTTCGCTCCTCTTTGGGAAGCTCATTGACGTCCCCAAGATACCTGATGGCATCTACTAGTTTTTCAAGCATGAGCTCGTCCCTCGTTCCTGTCTGATGTCCCTTGTTCCTGTCTGATGGACAACAAGTACTTTTTGCCTGCCCACAGTTTTTGTTTTTGATGACTGTGGTGTTCGGGCCAGCTTGGTCACTCTAAGTAGGTAATTCGTCACTATGTAAGATTATGTAATTTTTATATACATTTCATCTCATCGATAAAATATTAACAGATTATTAACTTTATCCGGAAAGAAAGGTTTTTTTAAAGAAAATCGTATATGGGATAGAGTGAGATTCTGTCCTCTTTGCTATAATGCTTATAGCTCTCTGAGAATATCCGTTTGACTGATATTTAGTGTTTATTGTTGTATTTTGTCTACTTAAGGGGTATCTAGTCTTTCTCCCGTTCCCTTCTTCTTGATGCACAAATTTGCAGTGGAGATGGCAAGTTCTGAAAAACTTGTTGAGCCTTCCATGAAATGTATATTTTATATTATGTAATTTTAGGATCCTTAATGTGCTTTTCCTAAATTCGTGGTTCTGTCTAAATGATTAATAAATTCACCTTCAGCTGTCAAAACAATAGGGAGTTCGCGTCCTAAATTTGTTCTGGTATCCCCTTTTAAAATCTTTCATTCTTTATAGGCGATGTGGTTCTCAAGGAC</genome_strand>
        <mrna_strand>TCCAAAAACTCCTTGTTTTTACATTCCAAAGCTTCGATCTTTCTCTCTCTGCATTGGACAAAGTTCTAGGGTTTCATCAACAGCTTCATAAATGGATAGCTCGTATTGAGCGGCGATCGCCGCTAGTTATTATCTCGGCGTTCGATTCCTCCTGCTGTGGAAGATCGCCATTGATTCATCATCATGTTCGAAGCACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCATTTGCTTCGAAGATATCTTGGTGAATATGTCCATGGATTGTCGGCGGAGGCTTTGAGAATCACCGTATGGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGTGGTTCTCAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395386" ref_strand="+" ref_description="SGN-E395386 [TUS-16-L23]">
      <seq>tataggttctcttgggaccaaattcaagccctatgtcgtcttcgtcggcgttatgtacagctatattctgattcattgcaacagctgccgaacgttaatagatcagagatcagaaacattgagaaagatctcgatcctaaggttattttactgtggaggtttcttgctcatgcaaaggttgaatctttgaaatcaaaggaggcagctgaacaaagaatgcttagaaagagaagctggttttcttttacatggagtacagatactgcagatgtgtctgcgggggacacttctaaagaagctaatacaatggaggaccaattgactcgggaggagtggcaagcaatcaataaattacttagttaccagccagatgaggaattggcactgcagcatgggaaggaaaatgtgatccactacttgttaaatgtttctatcagtagggcagctgcaaggataattgatatagatcagatagagatcgttggcggtagatttgaaaatctttatgtgtcaacgaagctcaagaatcgaaactcccattgcgatctgacactgaaattttacggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="110761" stop="114264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111061" g_stop="111218" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111219" i_stop="113389" i_length="2171">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113390" g_stop="113482" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="251" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113483" i_stop="113645" i_length="163">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113646" g_stop="113964" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="570" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E395386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111061" e_stop="111218"/>
          <exon e_start="113390" e_stop="113482"/>
          <exon e_start="113646" e_stop="113964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGGTTCTCTTGGGACCAAATTCAAGCCCTATGTCGTCTTCGTCGGCGTTATGTACAGCTATATTCTGATTCATTGCAACAGCTGCCGAACGTTAATAGATCAGAGATCAGAAACATTGAGAAAGATCTCGATCCTAAGGTTATTTTACTGTGGAGGTAGGTTGTATAATTTTTCTTCCTATTACCGGCACCATTTTAAACATTTATGTTTCTTGATATTGGAATAGCTGGTGATGAACTTCCTTCTTTTTGACTTGTATTAGTACTATCCTTTCTCTTTCTGTAAAATTGTCACTAAGCTGATAGGGGTCTCTTAGCTTGTAGTATACCACAATTATTCTTTTCTTTGTTTTCTCTTTTTCCATATTTTGGGGGTAAGAATGGAAATCCACGTACATATGTATACACAGTCATAACAGAACTTCAAACAAAAATATAAATCTCTGAAAACAAACAATTAGTCGTTACATTTCTTGGACCTCATACAAGCTCCAAAAATGTATGGAAAACATAAAGTCCTCAACTTTGCACGAAAGAGCTATCACTTTGCCAAAGACACTTTCCCAAATTTACAGCTAAATATAGAAACCTTCCTCACAAAGGTTCCTCTATGGAGACGAACTATGATGGGAGTAAATGGCTTTTCAACAATATCGGCTCATGATTGGAAATGGAAATCGCAAACGTTCGGCTTAATGTGGTGCAGGGAGTTTGTTCCTGCTTCAGTAGTAAATGTTAAGACGGAAATAGTGGATTTACATGTTAAGGATATTTATGAAACATATTGGGATATATTATTTAGGAGGCATAGGCCAGTTCGAAAACGTGAAAAGTGAAGTATCTTCTTCATAAAATATGTTAGTGTTGAGTTGATCTGCGGTTTTTCTGCCTATTTGTTTTCTTTGGTGGACTCAAATCAGCTGCTTGCTATTGCAATGTTGCATTAGGAAAATAAGCTATGCAGAGGGAATTCAGGGTGCATGTAGACAATAAGCTTAGCAGATGGAATCAAAGATTTATGTAGCTTAACCAAGCCAATTTGGCACAATTTGATTGAAAGCATTGACATACATGAACCTACATAAGAACATCAACTTAGCCGTGAGCATCCAATCTCTTCAAGCATCAAACTACATTAAAATGTTAAAGCAGTATGCCCCTTGTAATGGAGAGGGCCAGTGACAAAATCTTTCTTTGTGAAATTCTATATATTTGCTTGATTAATGAGTAAGATGTCCAACTCAGATAGAGAGATCTTGGGAGATGGGTGCTCTCCAAAAGTAGCTTTATTTGCTAGGTGTGTTGCATGTGATGCTATTCTTGTAATGCATAATTTAAGGAGGGATATGTGGTGCAATTCAGAAAAAAAGACCAAGCGAAATTGTATTTTGTTATTTTGCTTTTGGTGTACTAAATTTTACTCTGGCGATACAGACTCAATCCTATATGTGCTAGGTACCATTAGGCTTTATTTACTTTTGACATACTTTGTATCTTATCTCACTCTTGTAAATATGGTTTTTCAGTACTAAATAAGTACTATATGAATACAAAAATGTTGCCTGATTGAAAAACGATATGTGGTGTTGCATGCAAAAGAAGGTGGTAAGGACACATGCCATTTGTTCCTTCACTGTGTGTTCATGTTGGAATCAAGAAATGCTATACCCATTGTTTAACATTTCTTGGGGAATTCCTGGAATAGTGGCAGTTACTGTAGCAGCTTGGAGGTTGGACAGAAAGGGGGCAAGAAAAAGAAGTTGGTGACTAGCACATTTGTGCATGTATTGGATGATTTGGAGATAGGAATAGAAGAGTGGTTGAAGGAGTTGAAAAGCTGGCGCAAAAAATATCCTTGTGTTTTGTATGAAAAAAGTCTTCTACTTTTTTTTAATAGATAGTTGGATCTATATATTGGAGTTCCGTTCTGAACATTTGGAGTATAATGGTTGGAAGCAGTTATGAAAAGAAACAAACAGGTGTCCTTTCTTATGCTAGAGTTGTGTATCCGGATCTCAAACATGATTTTTATTAAGATATATTGTAAAATTGCAACCCAATATAAAAGAAGCTTGCCTATTGATACTAGAGGATATCATAAAATGGAACTTTTGTGTCAATGGTGATATCCCTTCATTTGTAAATCATTGCCTTTGATGTATAACCCTAGAATCAGTTCTCAGCCTCCTGAATTCTTATCTTCTTTCAGCCCTCGTGTATTCGCCATACTGTTATATCCTTGAATGCACCGAAACTTCATGTAATTTCTAGATTGTATTCACTTCAATTAGTGATAAGGTTTTCTAATTTGGTGGATTGTCTTCTAGGTTTCTTGCTCATGCAAAGGTTGAATCTTTGAAATCAAAGGAGGCAGCTGAACAAAGAATGCTTAGAAAGAGAAGCTGGTTTTCTTTTACATGGTTGGTCTTAAACTACGTCCTTTTATCTGTTCATAAACAATTTTGTATTTTATTGTTAACTGTTCTGAAATTCCTTATCTCTTGCTCTTTGTGACTGATCTTTTCCTGATGTTTATCTTCACTTATCTTTCACACATTTAGATTTTTTTGCTCGTGACTGTAGGAGTACAGATACTGCAGATGTGTCTGCGGGGGACACTTCTAAAGAAGCTAATACAATGGAGGACCAATTGACTCGGGAGGAGTGGCAAGCAATCAATAAATTACTTAGTTACCAGCCAGATGAGGAATTGGCACTGCAGCATGGGAAGGAAAATGTGATCCACTACTTGTTAAATGTTTCTATCAGTAGGGCAGCTGCAAGGATAATTGATATAGATCAGATAGAGATCGTTGGCGGTAGATTTGAAAATCTTTATGTGTCAACGAAGCTCAAGAATCGAAACTCCCATTGCGATCTGACACTGAAATTTTACGGATTG</genome_strand>
        <mrna_strand>TATAGGTTCTCTTGGGACCAAATTCAAGCCCTATGTCGTCTTCGTCGGCGTTATGTACAGCTATATTCTGATTCATTGCAACAGCTGCCGAACGTTAATAGATCAGAGATCAGAAACATTGAGAAAGATCTCGATCCTAAGGTTATTTTACTGTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTGCTCATGCAAAGGTTGAATCTTTGAAATCAAAGGAGGCAGCTGAACAAAGAATGCTTAGAAAGAGAAGCTGGTTTTCTTTTACATG...................................................................................................................................................................GAGTACAGATACTGCAGATGTGTCTGCGGGGGACACTTCTAAAGAAGCTAATACAATGGAGGACCAATTGACTCGGGAGGAGTGGCAAGCAATCAATAAATTACTTAGTTACCAGCCAGATGAGGAATTGGCACTGCAGCATGGGAAGGAAAATGTGATCCACTACTTGTTAAATGTTTCTATCAGTAGGGCAGCTGCAAGGATAATTGATATAGATCAGATAGAGATCGTTGGCGGTAGATTTGAAAATCTTTATGTGTCAACGAAGCTCAAGAATCGAAACTCCCATTGCGATCTGACACTGAAATTTTACGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206333" ref_strand="+" ref_description="SGN-E206333 [cLEC-23-M6]">
      <seq>ataggttctcttgggaccaaattcaagccctatgtcgtcttcgtcggcgttatgtacagctatattctgattcattgcaacagctgccgaacgttaatagatcagagatcagaaacattgagaaagatctcgatcctaaggttattttactgtggaggtttcttgctcatgcaaaggttgaatctttgaaatcaaaggaggcagctgaacaaagaatgcttagaaagagaagctggttttcttttacatggagtacagatactgcagatgtgtctgcgggggacacttctaaagaagctaatacaatggaggaccaattgactcgggaggagtggcaagcaatcaataaattacttagttaccagccagatgaggaattggcactgcagcatgggaaggaaaatgtgatccactacttgttaaatgtttctatcagtagggcagctgcaaggataattgatatagatcagatagagatcgttggcggtagatttgaaaatctttatgtgtcaacgaagctcaagaatcgaaactcccattgcgatctgacactgaaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="110762" stop="114257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111062" g_stop="111218" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111219" i_stop="113389" i_length="2171">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113390" g_stop="113482" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="250" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113483" i_stop="113645" i_length="163">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113646" g_stop="113957" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="562" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E206333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111062" e_stop="111218"/>
          <exon e_start="113390" e_stop="113482"/>
          <exon e_start="113646" e_stop="113957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTTCTCTTGGGACCAAATTCAAGCCCTATGTCGTCTTCGTCGGCGTTATGTACAGCTATATTCTGATTCATTGCAACAGCTGCCGAACGTTAATAGATCAGAGATCAGAAACATTGAGAAAGATCTCGATCCTAAGGTTATTTTACTGTGGAGGTAGGTTGTATAATTTTTCTTCCTATTACCGGCACCATTTTAAACATTTATGTTTCTTGATATTGGAATAGCTGGTGATGAACTTCCTTCTTTTTGACTTGTATTAGTACTATCCTTTCTCTTTCTGTAAAATTGTCACTAAGCTGATAGGGGTCTCTTAGCTTGTAGTATACCACAATTATTCTTTTCTTTGTTTTCTCTTTTTCCATATTTTGGGGGTAAGAATGGAAATCCACGTACATATGTATACACAGTCATAACAGAACTTCAAACAAAAATATAAATCTCTGAAAACAAACAATTAGTCGTTACATTTCTTGGACCTCATACAAGCTCCAAAAATGTATGGAAAACATAAAGTCCTCAACTTTGCACGAAAGAGCTATCACTTTGCCAAAGACACTTTCCCAAATTTACAGCTAAATATAGAAACCTTCCTCACAAAGGTTCCTCTATGGAGACGAACTATGATGGGAGTAAATGGCTTTTCAACAATATCGGCTCATGATTGGAAATGGAAATCGCAAACGTTCGGCTTAATGTGGTGCAGGGAGTTTGTTCCTGCTTCAGTAGTAAATGTTAAGACGGAAATAGTGGATTTACATGTTAAGGATATTTATGAAACATATTGGGATATATTATTTAGGAGGCATAGGCCAGTTCGAAAACGTGAAAAGTGAAGTATCTTCTTCATAAAATATGTTAGTGTTGAGTTGATCTGCGGTTTTTCTGCCTATTTGTTTTCTTTGGTGGACTCAAATCAGCTGCTTGCTATTGCAATGTTGCATTAGGAAAATAAGCTATGCAGAGGGAATTCAGGGTGCATGTAGACAATAAGCTTAGCAGATGGAATCAAAGATTTATGTAGCTTAACCAAGCCAATTTGGCACAATTTGATTGAAAGCATTGACATACATGAACCTACATAAGAACATCAACTTAGCCGTGAGCATCCAATCTCTTCAAGCATCAAACTACATTAAAATGTTAAAGCAGTATGCCCCTTGTAATGGAGAGGGCCAGTGACAAAATCTTTCTTTGTGAAATTCTATATATTTGCTTGATTAATGAGTAAGATGTCCAACTCAGATAGAGAGATCTTGGGAGATGGGTGCTCTCCAAAAGTAGCTTTATTTGCTAGGTGTGTTGCATGTGATGCTATTCTTGTAATGCATAATTTAAGGAGGGATATGTGGTGCAATTCAGAAAAAAAGACCAAGCGAAATTGTATTTTGTTATTTTGCTTTTGGTGTACTAAATTTTACTCTGGCGATACAGACTCAATCCTATATGTGCTAGGTACCATTAGGCTTTATTTACTTTTGACATACTTTGTATCTTATCTCACTCTTGTAAATATGGTTTTTCAGTACTAAATAAGTACTATATGAATACAAAAATGTTGCCTGATTGAAAAACGATATGTGGTGTTGCATGCAAAAGAAGGTGGTAAGGACACATGCCATTTGTTCCTTCACTGTGTGTTCATGTTGGAATCAAGAAATGCTATACCCATTGTTTAACATTTCTTGGGGAATTCCTGGAATAGTGGCAGTTACTGTAGCAGCTTGGAGGTTGGACAGAAAGGGGGCAAGAAAAAGAAGTTGGTGACTAGCACATTTGTGCATGTATTGGATGATTTGGAGATAGGAATAGAAGAGTGGTTGAAGGAGTTGAAAAGCTGGCGCAAAAAATATCCTTGTGTTTTGTATGAAAAAAGTCTTCTACTTTTTTTTAATAGATAGTTGGATCTATATATTGGAGTTCCGTTCTGAACATTTGGAGTATAATGGTTGGAAGCAGTTATGAAAAGAAACAAACAGGTGTCCTTTCTTATGCTAGAGTTGTGTATCCGGATCTCAAACATGATTTTTATTAAGATATATTGTAAAATTGCAACCCAATATAAAAGAAGCTTGCCTATTGATACTAGAGGATATCATAAAATGGAACTTTTGTGTCAATGGTGATATCCCTTCATTTGTAAATCATTGCCTTTGATGTATAACCCTAGAATCAGTTCTCAGCCTCCTGAATTCTTATCTTCTTTCAGCCCTCGTGTATTCGCCATACTGTTATATCCTTGAATGCACCGAAACTTCATGTAATTTCTAGATTGTATTCACTTCAATTAGTGATAAGGTTTTCTAATTTGGTGGATTGTCTTCTAGGTTTCTTGCTCATGCAAAGGTTGAATCTTTGAAATCAAAGGAGGCAGCTGAACAAAGAATGCTTAGAAAGAGAAGCTGGTTTTCTTTTACATGGTTGGTCTTAAACTACGTCCTTTTATCTGTTCATAAACAATTTTGTATTTTATTGTTAACTGTTCTGAAATTCCTTATCTCTTGCTCTTTGTGACTGATCTTTTCCTGATGTTTATCTTCACTTATCTTTCACACATTTAGATTTTTTTGCTCGTGACTGTAGGAGTACAGATACTGCAGATGTGTCTGCGGGGGACACTTCTAAAGAAGCTAATACAATGGAGGACCAATTGACTCGGGAGGAGTGGCAAGCAATCAATAAATTACTTAGTTACCAGCCAGATGAGGAATTGGCACTGCAGCATGGGAAGGAAAATGTGATCCACTACTTGTTAAATGTTTCTATCAGTAGGGCAGCTGCAAGGATAATTGATATAGATCAGATAGAGATCGTTGGCGGTAGATTTGAAAATCTTTATGTGTCAACGAAGCTCAAGAATCGAAACTCCCATTGCGATCTGACACTGAAATTTTA</genome_strand>
        <mrna_strand>ATAGGTTCTCTTGGGACCAAATTCAAGCCCTATGTCGTCTTCGTCGGCGTTATGTACAGCTATATTCTGATTCATTGCAACAGCTGCCGAACGTTAATAGATCAGAGATCAGAAACATTGAGAAAGATCTCGATCCTAAGGTTATTTTACTGTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTGCTCATGCAAAGGTTGAATCTTTGAAATCAAAGGAGGCAGCTGAACAAAGAATGCTTAGAAAGAGAAGCTGGTTTTCTTTTACATG...................................................................................................................................................................GAGTACAGATACTGCAGATGTGTCTGCGGGGGACACTTCTAAAGAAGCTAATACAATGGAGGACCAATTGACTCGGGAGGAGTGGCAAGCAATCAATAAATTACTTAGTTACCAGCCAGATGAGGAATTGGCACTGCAGCATGGGAAGGAAAATGTGATCCACTACTTGTTAAATGTTTCTATCAGTAGGGCAGCTGCAAGGATAATTGATATAGATCAGATAGAGATCGTTGGCGGTAGATTTGAAAATCTTTATGTGTCAACGAAGCTCAAGAATCGAAACTCCCATTGCGATCTGACACTGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395489" ref_strand="+" ref_description="SGN-E395489 [TUS-16-L23](-)">
      <seq>ggtaagcaagtacatgaaattcctcctgcaaacatcggaggtaccttttcctgtatcagcatcagttccagaggcatggatctgcagaaggtatgctagtctcctcactgaaaaccttccccaacacatagatgagcatgatgcacagacttgcaaaaatgcagtataggaggaagataggtcatggaaagcgagagatatcgagaatcaagagaaaatgtggaggcaaaaagtgtgtagcaattagttgataaaagcagatagagaaagacaacacgtaagctattgctccatgggagttttcagagaaaggaacatcttaatattaaacagtcaagtaattttgaaaagagatcttgtgtgatgaaaaccatatttgaagaaaatcctataattcaatggtaattagcacaatgcaatttggaactggaatcacccatcaaagaaaaataccttacctcttgaactagcattttaggggttgggttacgcccaaggtccatttctgtaataggttctttccgatgaaatctttccttgattgtaaccaaacctttgtgctctagctatgtgcttacatactagatgtggctaaattaatccttaaacccttattgttcctgcatgtacaggatgaataatgctcttcatttattttaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="123510" stop="124773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123810" g_stop="124482" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E395489" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123810" e_stop="124482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAGCAAGTACATGAAATTCCTCCTGCAAACATCGGAGGTACCTTTTCCTGTATCAGCATCAGTTCCAGAGGCATGGATCTGCAGAAGGTATGCTAGTCTCCTCACTGAAAACCTTCCCCAACACATAGATGAGCATGATGCACAGACTTGCAAAAATGCAGTATAGGAGGAAGATAGGTCATGGAAAGCGAGAGATATCGAGAATCAAGAGAAAATGTGGAGGCAAAAAGTGTGTAGCAATTAGTTGATAAAAGCAGATAGAGAAAGACAACACGTAAGCTATTGCTCCATGGGAGTTTTCAGAGAAAGGAACATCTTAATATTAAACAGTCAAGTAATTTTGAAAAGAGATCTTGTGTGATGAAAACCATATTTGAAGAAAATCCTATAATTCAATGGTAATTAGCACAATGCAATTTGGAACTGGAATCACCCATCAAAGAAAAATACCTTACCTCTTGAACTAGCATTTTAGGGGTTGGGTTACGCCCAAGGTCCATTTCTGTAATAGGTTCTTTCCGATGAAATCTTTCCTTGATTGTAACCAAACCTTTGTGCTCTAGCTATGTGCTTACATACTAGATGTGGCTAAATTAATCCTTAAACCCTTATTGTTCCTGCATGTACAGGATGAATAATGCTCTTCATTTATTTTAATTCATTGTAAATA</genome_strand>
        <mrna_strand>GGTAAGCAAGTACATGAAATTCCTCCTGCAAACATCGGAGGTACCTTTTCCTGTATCAGCATCAGTTCCAGAGGCATGGATCTGCAGAAGGTATGCTAGTCTCCTCACTGAAAACCTTCCCCAACACATAGATGAGCATGATGCACAGACTTGCAAAAATGCAGTATAGGAGGAAGATAGGTCATGGAAAGCGAGAGATATCGAGAATCAAGAGAAAATGTGGAGGCAAAAAGTGTGTAGCAATTAGTTGATAAAAGCAGATAGAGAAAGACAACACGTAAGCTATTGCTCCATGGGAGTTTTCAGAGAAAGGAACATCTTAATATTAAACAGTCAAGTAATTTTGAAAAGAGATCTTGTGTGATGAAAACCATATTTGAAGAAAATCCTATAATTCAATGGTAATTAGCACAATGCAATTTGGAACTGGAATCACCCATCAAAGAAAAATACCTTACCTCTTGAACTAGCATTTTAGGGGTTGGGTTACGCCCAAGGTCCATTTCTGTAATAGGTTCTTTCCGATGAAATCTTTCCTTGATTGTAACCAAACCTTTGTGCTCTAGCTATGTGCTTACATACTAGATGTGGCTAAATTAATCCTTAAACCCTTATTGTTCCTGCATGTACAGGATGAATAATGCTCTTCATTTATTTTAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409010" ref_strand="+" ref_description="SGN-E409010 [PPI-12-J10]">
      <seq>gttttcatcacgtaatgatgcctatctttcgtcccgggtgggcatcgctgtcgctctacaaaattctgagaacttcagttctgggatatcccttcttgagctggaaaagaagcaacgtgttgatgtcaaggcctttggtgtgaatggattttattacaagctttcggtggcgctgcgcatgacttcagacagaacaaaggttgtgcattttcaaccacatagcttattcatcaatagggttggatgtagtgtgtgcctgtgtcagtgtgattctcagtcagtggagtggattcatcctacagatcctccaaaacatttttcatggaagtctaataaagtggaacttttaaagttgcgggttgatggatatgattggagcccaccatttagtgttgatagtgaaggtgttatgtgtatttgcttgaaaaatcagacctctcataacctaatgcatctcaaggttgaagttagaagcgggacaaaaagttcccgctatgaagttatacttcgccccaatttcttcaccagtccttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0049F08-H8I5s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0049F08.1" temp_strand="+" temp_description="C09HBa0049F08.1  EF606852.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606852.1| upload_account_name:spain (1 - 151911)">
        <position start="149084" stop="151217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149384" g_stop="149495" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149496" i_stop="149568" i_length="73">
            <donor d_prob="0.413" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149569" g_stop="149655" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="199" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149656" i_stop="150473" i_length="818">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150474" g_stop="150626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="352" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150627" i_stop="150733" i_length="107">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="150734" g_stop="150917" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="536" r_length="184" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0049F08.1" gen_strand="+" ref_id="SGN-E409010" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0049F08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149384" e_stop="149495"/>
          <exon e_start="149569" e_stop="149655"/>
          <exon e_start="150474" e_stop="150626"/>
          <exon e_start="150734" e_stop="150917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCATCGCGTAATGATGCCTATCTTTCGTCCCGGGTGGGCATCGCTGTTGCTCTACAAAATTCTGAGAACTTTAGTTCCGGGATATCTCTTCTTGAGCTGGAAAAGAAGGTAACATGGATAAAGATTGGTTTATTCACAACGGATAAAATCATGGCACTCAATAAACTTGGATTTCCTGCAGCAACGTGTTGATGTCAAGGCCTTTGGTGTGGATGGATTTTATTACAAGCTTTCGGTGGTGCTGCGCATGACTTCAGACAGAACAAAGGTATCCTCAATTGTTGTAACTCCTTGTCATATTAACTGAGTGAGTTTTCCCTCGTGAATATAGGAGCTTATTTGAGTAGTCAAGTACCCTGCACGTGACATACAACTACATTGAGATCATTTGTTTTTATTTATATGAATTTACAGCATGCAAACCTTTTCTACTAGTTTGCTAATCTACACCCGTTGAGACTGTGACATGTCTGGCCCCTCCAACAAACACCAGATTTGTGTATATTAATAAATTTATGTACTTATTAAAATTAAAGATATGCCTAGCCTTTTTGTTTGTTCTGGCACTAAATTAGCCACAGCAAAGTCAAAGCAAAGCTACGTTGTCCATCATTAAGTACTGCTGATAAATACACCGTTACCATTCTGAACAAAAAGACTATGCTAAAGTAGGATTTTCCTTTGGCTTTGGCAACAGGTTTAAAAAGGCCAACATTAAAATAGAAAAATTTTCTCTCAGATAAGGTTTCTCAACATTAGGCATCATATTAGAAAAACCAGTTCTCCTAACTTACAGAGTTGCAAACGGAGGATTGAAGCATAAGAATAATACAAAATTTTACTCTTAGTACCAAGTTGTTTAGAGTTGTGACAGTAAGTGAGAATATCGATTATTGTGCATAAACTGGTTAGTCTTTGAAAGATGTGCATAGGAATCACTTCTATATCCCGACCATATGCTAACTGACAGATCTGAAACATGTAATGTCCATATATTCTGAAATAGCTGGTCCTTGAAGAAGTCAAATGAAAGTTATGACTGAGATGTCAATTTCATACTGAATGAGTTATTTGATTCATCTGCAGGTTGTGCATTTTCAACCACATAGCTTATTCATCAATAGAGTTGGATGTAGTGTGTGCTTGTGTCAGTGTGATTCTCAGTCAGTGGAGTGGATCCATCCTACAGATCCTCCAAAACATTTTTCATGGCAGTCTAATAAAGTGGAACTTTTAAAGGTTTGTATATAATCAACATTCTCCTTGCTGTTATTCATAATCTTCCTCGATGTAAAAGTTAGTATGTTGTTTTTCATTCTTATGATCCATTTTTGTTTTTCTCTCAGTTGCGGCTTGATGGATATGATTGGAGCTCACCATTTAGTATTGATAATGAAGGTGTTATGTGTATTTGCTTGAAAAATCAGACCTCTCATAACCCAATGCATCTCAAGGTTGAAGTTAGAAGCGGAACAAAAAGTTCCCGCTATGAAATTATACTTCGCCCCAATTCCTTCACCAGTCCTTACA</genome_strand>
        <mrna_strand>GTTTTCATCACGTAATGATGCCTATCTTTCGTCCCGGGTGGGCATCGCTGTCGCTCTACAAAATTCTGAGAACTTCAGTTCTGGGATATCCCTTCTTGAGCTGGAAAAGAAG.........................................................................CAACGTGTTGATGTCAAGGCCTTTGGTGTGAATGGATTTTATTACAAGCTTTCGGTGGCGCTGCGCATGACTTCAGACAGAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCATTTTCAACCACATAGCTTATTCATCAATAGGGTTGGATGTAGTGTGTGCCTGTGTCAGTGTGATTCTCAGTCAGTGGAGTGGATTCATCCTACAGATCCTCCAAAACATTTTTCATGGAAGTCTAATAAAGTGGAACTTTTAAAG...........................................................................................................TTGCGGGTTGATGGATATGATTGGAGCCCACCATTTAGTGTTGATAGTGAAGGTGTTATGTGTATTTGCTTGAAAAATCAGACCTCTCATAACCTAATGCATCTCAAGGTTGAAGTTAGAAGCGGGACAAAAAGTTCCCGCTATGAAGTTATACTTCGCCCCAATTTCTTCACCAGTCCTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>136</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1698" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1698" e_stop="1617"/>
            <exon e_start="974" e_stop="747"/>
            <exon e_start="589" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1698" e_stop="1617" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.963">
            <gDNA_intron_boundary i_start="1616" i_stop="975" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="974" e_stop="747" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="589" e_stop="1" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1698" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1695" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1694" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1694" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="48"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1694" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="48"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1686" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="43"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1685" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1684" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1684" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1684" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1682" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="41"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1681" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="42"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1681" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1681" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1680" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="49"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1680" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="76"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1680" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1679" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1679" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1679" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1679" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1679" stop="1617"/>
              <exon start="974" stop="877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1678" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="64"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1676" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1675" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1674" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1674" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1673" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1671" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1671" stop="1617"/>
              <exon start="974" stop="765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1667" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="40"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1667" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="80"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1661" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="41"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1661" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="50"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1661" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1659" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1659" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1658" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1657" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1655" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1655" stop="1617"/>
              <exon start="974" stop="815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695357" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="83"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1654" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1652" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1651" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1647" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="88"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1639" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1617"/>
              <exon start="974" stop="747"/>
              <exon start="589" stop="228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="974" stop="747"/>
              <exon start="589" stop="477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="973" stop="747"/>
              <exon start="589" stop="220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="971" stop="747"/>
              <exon start="589" stop="139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="969" stop="747"/>
              <exon start="589" stop="179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="961" stop="747"/>
              <exon start="589" stop="305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="945" stop="747"/>
              <exon start="589" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="938" stop="747"/>
              <exon start="589" stop="141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="932" stop="759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="919" stop="747"/>
              <exon start="589" stop="398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="892" stop="747"/>
              <exon start="589" stop="53"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="881" stop="747"/>
              <exon start="589" stop="13"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="880" stop="747"/>
              <exon start="589" stop="45"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="880" stop="747"/>
              <exon start="589" stop="251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="804" stop="747"/>
              <exon start="589" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="787" stop="747"/>
              <exon start="589" stop="18"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="497" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCATTCTCTCTATAAACTTCTCTCACTTTCTTCAAATCTAAGCTTATTAATCATGTCTTGCTACAAGGGAAAGTATGCTG : ATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG : GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAGAGGAAGCCACCGTCAACCTCAACGCCATGAA</gDNA_template>
            <first_frame> S  H  S  L  Y  K  L  L  S  L  S  S  N  L  S  L  L  I  M  S  C  Y  K  G  K  Y  A   : D  E  L  I  K  N  A  T  Y  I  G  T  P  G  K  G  I  L  A  A  D  E  S  T  G  T  I  G  K  R  L  S  S  I  N  V  E  N  V  E  S  N  R  R  A  L  R  E  L  L  F  C  T  P  G  C  L  Q  Y  L  S  G  V  I  L  F  E  E  T  L  Y  Q  K  T  A  A   : G  K  P  F  V  E  V  M  K  E  A  G  V  L  P  G  I  K  V  D  K  G  T  V  E  L  P  G  T  D  G  E  T  T  T  Q  G  L  D  G  L  A  E  R  C  Q  K  Y  Y  E  A  G  A  R  F  A  K  W  R  A  V  L  K  I  G  A  N  E  P  S  Q  L  A  I  N  D  N  A  N  G  L  A  R  Y  A  I  I  C  Q  Q  N  G  L  V  P  I  V  E  P  E  I  L  V  D  G  A  H  D  I  K  K  C  A  D  V  T  E  R  V  L  A  A  C  Y  K  A  L  N  D  H  H  V  L  L  E  G  T  L  L  K  P  N  M  V  T  P  G  S  E  S  P  K  V  A  P  E  V  I  A  E  Y  T  V  R  A  L  Q  R  T  M  P  P  A  V  P  A  V  V  F  L  S  G  G  Q  S  E  E  E  A  T  V  N  L  N  A  M   </first_frame>
            <second_frame>  L  I  L  S  I  N  F  S  H  F  L  Q  I  *  A  Y  *  S  C  L  A  T  R  E  S  M  L  :  M  S  L  L  R  M  L  H  T  L  V  P  L  E  R  V  S  L  L  L  M  N  L  L  E  P  L  E  S  V  S  R  A  S  M  S  R  M  *  N  Q  T  G  G  L  S  V  S  F  S  F  A  P  L  V  V  F  S  T  L  A  V  *  S  C  L  R  R  H  F  T  R  R  L  L  L  :  A  S  L  S  L  K  S  *  R  K  L  E  S  F  L  V  L  R  L  T  R  V  P  L  N  S  P  G  P  M  V  R  P  P  L  K  V  L  M  V  S  Q  N  V  A  R  S  T  T  R  L  V  L  G  S  P  N  G  V  L  C  *  R  L  V  P  M  S  H  L  S  S  P  S  M  I  T  P  M  A  L  P  D  T  P  L  F  A  S  R  M  V  L  Y  P  L  L  S  P  R  S  L  S  M  E  P  M  T  L  K  S  A  L  M  L  P  S  A  F  L  L  L  A  T  R  L  S  M  T  T  M  S  S  L  K  V  P  C  *  S  L  T  W  S  L  L  V  L  N  L  P  R  L  H  Q  K  *  S  L  S  T  P  S  V  L  C  N  A  Q  C  H  P  L  F  P  L  W  C  S  C  L  V  V  R  V  K  R  K  P  P  S  T  S  T  P  *  </second_frame>
            <third_frame>   S  F  S  L  *  T  S  L  T  F  F  K  S  K  L  I  N  H  V  L  L  Q  G  K  V  C  * :   *  A  Y  *  E  C  Y  I  H  W  Y  P  W  K  G  Y  P  C  C  *  *  I  Y  W  N  H  W  K  A  S  L  E  H  Q  C  R  E  C  R  I  K  Q  E  G  S  P  *  A  S  L  L  H  P  W  L  S  S  V  P  *  R  C  D  L  V  *  G  D  T  L  P  E  D  C  C  W :   Q  A  F  R  *  S  H  E  G  S  W  S  P  S  W  Y  *  G  *  Q  G  Y  R  *  T  P  R  D  R  W  *  D  H  H  S  R  S  *  W  S  R  R  T  L  P  E  V  L  R  G  W  C  *  V  R  Q  M  A  C  C  V  E  D  W  C  Q  *  A  I  S  A  R  H  Q  *  *  R  Q  W  P  C  Q  I  R  H  Y  L  P  A  E  W  S  C  T  H  C  *  A  R  D  P  C  R  W  S  P  *  H  *  K  V  R  *  C  Y  R  A  R  S  C  C  L  L  Q  G  S  Q  *  P  P  C  P  P  *  R  Y  L  V  E  A  *  H  G  H  S  W  F  *  I  S  Q  G  C  T  R  S  D  R  *  V  H  R  P  C  F  A  T  H  N  A  T  R  C  S  R  C  G  V  P  V  W  W  S  E  *  R  G  S  H  R  Q  P  Q  R  H  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1698" stop="1617"/>
                    <exon start="974" stop="747"/>
                    <exon start="589" stop="3"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHSLYKLLSLSSNLSLLIMSCYKGKYADELIKNATYIGTPGKGILAADESTGTIGKRLSSINVENVESNRRALRELLFCTPGCLQYLSGVILFEETLYQKTAAGKPFVEVMKEAGVLPGIKVDKGTVELPGTDGETTTQGLDGLAERCQKYYEAGARFAKWRAVLKIGANEPSQLAINDNANGLARYAIICQQNGLVPIVEPEILVDGAHDIKKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSESPKVAPEVIAEYTVRALQRTMPPAVPAVVFLSGGQSEEEATVNLNAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="976" e_stop="747"/>
            <exon e_start="589" e_stop="13"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="976" e_stop="747" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="746" i_stop="590" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="589" e_stop="13" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="976" stop="751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="974" stop="747"/>
              <exon start="589" stop="477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="973" stop="747"/>
              <exon start="589" stop="220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="971" stop="747"/>
              <exon start="589" stop="139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="969" stop="747"/>
              <exon start="589" stop="179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="961" stop="747"/>
              <exon start="589" stop="305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="945" stop="747"/>
              <exon start="589" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="938" stop="747"/>
              <exon start="589" stop="141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="932" stop="759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="919" stop="747"/>
              <exon start="589" stop="398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="892" stop="747"/>
              <exon start="589" stop="53"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="881" stop="747"/>
              <exon start="589" stop="13"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="880" stop="747"/>
              <exon start="589" stop="45"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="880" stop="747"/>
              <exon start="589" stop="251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="804" stop="747"/>
              <exon start="589" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="787" stop="747"/>
              <exon start="589" stop="18"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="497" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTG : GCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTGGTGGTCAGAGTGAAGAGGAAGCCACCGTCAACCT</gDNA_template>
            <first_frame> R  *  A  Y  *  E  C  Y  I  H  W  Y  P  W  K  G  Y  P  C  C  *  *  I  Y  W  N  H  W  K  A  S  L  E  H  Q  C  R  E  C  R  I  K  Q  E  G  S  P  *  A  S  L  L  H  P  W  L  S  S  V  P  *  R  C  D  L  V  *  G  D  T  L  P  E  D  C  C  W :   Q  A  F  R  *  S  H  E  G  S  W  S  P  S  W  Y  *  G  *  Q  G  Y  R  *  T  P  R  D  R  W  *  D  H  H  S  R  S  *  W  S  R  R  T  L  P  E  V  L  R  G  W  C  *  V  R  Q  M  A  C  C  V  E  D  W  C  Q  *  A  I  S  A  R  H  Q  *  *  R  Q  W  P  C  Q  I  R  H  Y  L  P  A  E  W  S  C  T  H  C  *  A  R  D  P  C  R  W  S  P  *  H  *  K  V  R  *  C  Y  R  A  R  S  C  C  L  L  Q  G  S  Q  *  P  P  C  P  P  *  R  Y  L  V  E  A  *  H  G  H  S  W  F  *  I  S  Q  G  C  T  R  S  D  R  *  V  H  R  P  C  F  A  T  H  N  A  T  R  C  S  R  C  G  V  P  V  W  W  S  E  *  R  G  S  H  R  Q  P </first_frame>
            <second_frame>  D  E  L  I  K  N  A  T  Y  I  G  T  P  G  K  G  I  L  A  A  D  E  S  T  G  T  I  G  K  R  L  S  S  I  N  V  E  N  V  E  S  N  R  R  A  L  R  E  L  L  F  C  T  P  G  C  L  Q  Y  L  S  G  V  I  L  F  E  E  T  L  Y  Q  K  T  A  A   : G  K  P  F  V  E  V  M  K  E  A  G  V  L  P  G  I  K  V  D  K  G  T  V  E  L  P  G  T  D  G  E  T  T  T  Q  G  L  D  G  L  A  E  R  C  Q  K  Y  Y  E  A  G  A  R  F  A  K  W  R  A  V  L  K  I  G  A  N  E  P  S  Q  L  A  I  N  D  N  A  N  G  L  A  R  Y  A  I  I  C  Q  Q  N  G  L  V  P  I  V  E  P  E  I  L  V  D  G  A  H  D  I  K  K  C  A  D  V  T  E  R  V  L  A  A  C  Y  K  A  L  N  D  H  H  V  L  L  E  G  T  L  L  K  P  N  M  V  T  P  G  S  E  S  P  K  V  A  P  E  V  I  A  E  Y  T  V  R  A  L  Q  R  T  M  P  P  A  V  P  A  V  V  F  L  S  G  G  Q  S  E  E  E  A  T  V  N   </second_frame>
            <third_frame>   M  S  L  L  R  M  L  H  T  L  V  P  L  E  R  V  S  L  L  L  M  N  L  L  E  P  L  E  S  V  S  R  A  S  M  S  R  M  *  N  Q  T  G  G  L  S  V  S  F  S  F  A  P  L  V  V  F  S  T  L  A  V  *  S  C  L  R  R  H  F  T  R  R  L  L  L  :  A  S  L  S  L  K  S  *  R  K  L  E  S  F  L  V  L  R  L  T  R  V  P  L  N  S  P  G  P  M  V  R  P  P  L  K  V  L  M  V  S  Q  N  V  A  R  S  T  T  R  L  V  L  G  S  P  N  G  V  L  C  *  R  L  V  P  M  S  H  L  S  S  P  S  M  I  T  P  M  A  L  P  D  T  P  L  F  A  S  R  M  V  L  Y  P  L  L  S  P  R  S  L  S  M  E  P  M  T  L  K  S  A  L  M  L  P  S  A  F  L  L  L  A  T  R  L  S  M  T  T  M  S  S  L  K  V  P  C  *  S  L  T  W  S  L  L  V  L  N  L  P  R  L  H  Q  K  *  S  L  S  T  P  S  V  L  C  N  A  Q  C  H  P  L  F  P  L  W  C  S  C  L  V  V  R  V  K  R  K  P  P  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="975" stop="747"/>
                    <exon start="589" stop="15"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DELIKNATYIGTPGKGILAADESTGTIGKRLSSINVENVESNRRALRELLFCTPGCLQYLSGVILFEETLYQKTAAGKPFVEVMKEAGVLPGIKVDKGTVELPGTDGETTTQGLDGLAERCQKYYEAGARFAKWRAVLKIGANEPSQLAINDNANGLARYAIICQQNGLVPIVEPEILVDGAHDIKKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSESPKVAPEVIAEYTVRALQRTMPPAVPAVVFLSGGQSEEEATVN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="1091" e_stop="47"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="1091" e_stop="47" e_length="1045"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1091" stop="200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="976" stop="751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="932" stop="759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="592" stop="196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="497" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTGCTACATGCTTGTTAGATTTATATCCATAAAGATAGTGTATTTTTGGAGAATCCATTAAAAATGAAGTGATTTGTGATTGATAAGAGGTAATTAATGGTTGATTATCTGTAGATGAGCTTATTAAGAATGCTACATACATTGGTACCCCTGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGAACCATTGGAAAGCGTCTCTCGAGCATCAATGTCGAGAATGTAGAATCAAACAGGAGGGCTCTCCGTGAGCTTCTCTTTTGCACCCCTGGTTGTCTTCAGTACCTTAGCGGTGTGATCTTGTTTGAGGAGACACTTTACCAGAAGACTGCTGCTGGTATGTTTTGAAGAAATTGATTTGTTAGCATTGATTATTGTTTTATTTGATTGTTGAATTTAAGTGTAGGCTCGATCTCGTTTACGTTTATGACAGAAAGTGTAGGATTAGTAGTAGTAGTAGTAGCATTACATTGATGATCTGATATTGGTGGCAGGCAAGCCTTTCGTTGAAGTCATGAAGGAAGCTGGAGTCCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAACTCCCCGGGACCGATGGTGAGACCACCACTCAAGGTCTTGATGGTCTCGCAGAACGTTGCCAGAAGTACTACGAGGCTGGTGCTAGGTTCGCCAAATGGCGTGCTGTGTTGAAGATTGGTGCCAATGAGCCATCTCAGCTCGCCATCAATGATAACGCCAATGGCCTTGCCAGATACGCCATTATTTGCCAGCAGAATGGTCTTGTACCCATTGTTGAGCCCGAGATCCTTGTCGATGGAGCCCATGACATTAAAAAGTGCGCTGATGTTACCGAGCGCGTTCTTGCTGCTTGCTACAAGGCTCTCAATGACCACCATGTCCTCCTTGAAGGTACCTTGTTGAAGCCTAACATGGTCACTCCTGGTTCTGAATCTCCCAAGGTTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCTTTGCAACGCACAATGCCACCCGCTGTTCCCGCTGTGGTGTTCCTGTCTG</gDNA_template>
            <first_frame> M  L  L  H  A  C  *  I  Y  I  H  K  D  S  V  F  L  E  N  P  L  K  M  K  *  F  V  I  D  K  R  *  L  M  V  D  Y  L  *  M  S  L  L  R  M  L  H  T  L  V  P  L  E  R  V  S  L  L  L  M  N  L  L  E  P  L  E  S  V  S  R  A  S  M  S  R  M  *  N  Q  T  G  G  L  S  V  S  F  S  F  A  P  L  V  V  F  S  T  L  A  V  *  S  C  L  R  R  H  F  T  R  R  L  L  L  V  C  F  E  E  I  D  L  L  A  L  I  I  V  L  F  D  C  *  I  *  V  *  A  R  S  R  L  R  L  *  Q  K  V  *  D  *  *  *  *  *  *  H  Y  I  D  D  L  I  L  V  A  G  K  P  F  V  E  V  M  K  E  A  G  V  L  P  G  I  K  V  D  K  G  T  V  E  L  P  G  T  D  G  E  T  T  T  Q  G  L  D  G  L  A  E  R  C  Q  K  Y  Y  E  A  G  A  R  F  A  K  W  R  A  V  L  K  I  G  A  N  E  P  S  Q  L  A  I  N  D  N  A  N  G  L  A  R  Y  A  I  I  C  Q  Q  N  G  L  V  P  I  V  E  P  E  I  L  V  D  G  A  H  D  I  K  K  C  A  D  V  T  E  R  V  L  A  A  C  Y  K  A  L  N  D  H  H  V  L  L  E  G  T  L  L  K  P  N  M  V  T  P  G  S  E  S  P  K  V  A  P  E  V  I  A  E  Y  T  V  R  A  L  Q  R  T  M  P  P  A  V  P  A  V  V  F  L  S  </first_frame>
            <second_frame>  C  C  Y  M  L  V  R  F  I  S  I  K  I  V  Y  F  W  R  I  H  *  K  *  S  D  L  *  L  I  R  G  N  *  W  L  I  I  C  R  *  A  Y  *  E  C  Y  I  H  W  Y  P  W  K  G  Y  P  C  C  *  *  I  Y  W  N  H  W  K  A  S  L  E  H  Q  C  R  E  C  R  I  K  Q  E  G  S  P  *  A  S  L  L  H  P  W  L  S  S  V  P  *  R  C  D  L  V  *  G  D  T  L  P  E  D  C  C  W  Y  V  L  K  K  L  I  C  *  H  *  L  L  F  Y  L  I  V  E  F  K  C  R  L  D  L  V  Y  V  Y  D  R  K  C  R  I  S  S  S  S  S  S  I  T  L  M  I  *  Y  W  W  Q  A  S  L  S  L  K  S  *  R  K  L  E  S  F  L  V  L  R  L  T  R  V  P  L  N  S  P  G  P  M  V  R  P  P  L  K  V  L  M  V  S  Q  N  V  A  R  S  T  T  R  L  V  L  G  S  P  N  G  V  L  C  *  R  L  V  P  M  S  H  L  S  S  P  S  M  I  T  P  M  A  L  P  D  T  P  L  F  A  S  R  M  V  L  Y  P  L  L  S  P  R  S  L  S  M  E  P  M  T  L  K  S  A  L  M  L  P  S  A  F  L  L  L  A  T  R  L  S  M  T  T  M  S  S  L  K  V  P  C  *  S  L  T  W  S  L  L  V  L  N  L  P  R  L  H  Q  K  *  S  L  S  T  P  S  V  L  C  N  A  Q  C  H  P  L  F  P  L  W  C  S  C  L </second_frame>
            <third_frame>   V  A  T  C  L  L  D  L  Y  P  *  R  *  C  I  F  G  E  S  I  K  N  E  V  I  C  D  *  *  E  V  I  N  G  *  L  S  V  D  E  L  I  K  N  A  T  Y  I  G  T  P  G  K  G  I  L  A  A  D  E  S  T  G  T  I  G  K  R  L  S  S  I  N  V  E  N  V  E  S  N  R  R  A  L  R  E  L  L  F  C  T  P  G  C  L  Q  Y  L  S  G  V  I  L  F  E  E  T  L  Y  Q  K  T  A  A  G  M  F  *  R  N  *  F  V  S  I  D  Y  C  F  I  *  L  L  N  L  S  V  G  S  I  S  F  T  F  M  T  E  S  V  G  L  V  V  V  V  V  A  L  H  *  *  S  D  I  G  G  R  Q  A  F  R  *  S  H  E  G  S  W  S  P  S  W  Y  *  G  *  Q  G  Y  R  *  T  P  R  D  R  W  *  D  H  H  S  R  S  *  W  S  R  R  T  L  P  E  V  L  R  G  W  C  *  V  R  Q  M  A  C  C  V  E  D  W  C  Q  *  A  I  S  A  R  H  Q  *  *  R  Q  W  P  C  Q  I  R  H  Y  L  P  A  E  W  S  C  T  H  C  *  A  R  D  P  C  R  W  S  P  *  H  *  K  V  R  *  C  Y  R  A  R  S  C  C  L  L  Q  G  S  Q  *  P  P  C  P  P  *  R  Y  L  V  E  A  *  H  G  H  S  W  F  *  I  S  Q  G  C  T  R  S  D  R  *  V  H  R  P  C  F  A  T  H  N  A  T  R  C  S  R  C  G  V  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="620" stop="48"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYIDDLILVAGKPFVEVMKEAGVLPGIKVDKGTVELPGTDGETTTQGLDGLAERCQKYYEAGARFAKWRAVLKIGANEPSQLAINDNANGLARYAIICQQNGLVPIVEPEILVDGAHDIKKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSESPKVAPEVIAEYTVRALQRTMPPAVPAVVFLS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="984" stop="736"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSVDELIKNATYIGTPGKGILAADESTGTIGKRLSSINVENVESNRRALRELLFCTPGCLQYLSGVILFEETLYQKTAAGMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14248" PGL_stop="9311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14248" e_stop="13816"/>
            <exon e_start="9689" e_stop="9311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.560" acc_prob="0.698" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14248" e_stop="13816" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.560" acc_prob="0.698">
            <gDNA_intron_boundary i_start="13815" i_stop="9690" i_length="4126"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="9689" e_stop="9311" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14248" stop="13816"/>
              <exon start="9689" stop="9311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14226" stop="13816"/>
              <exon start="9689" stop="9407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14226" stop="13816"/>
              <exon start="9689" stop="9497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14225" stop="13850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGTTAGAGCAGCAATTACTGATGGTTTTGATGAATGCTGATGTGTTGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAG : TGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTCTTCCCTAAGAGATCTCTCCCTGTTGAGTTTTCAGTTGAACTGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTTTGAAGGCTACTGTCATTATTTTGATTCACTTGTTTCGAAATTCGAGAGTCGAAAATTACAAATTTTTTAATGTTTGAAGTTGATATAGAACATTTC</gDNA_template>
            <first_frame> G  V  R  A  A  I  T  D  G  F  D  E  C  *  C  V  G  R  V  G  *  R  *  R  N  E  S  *  E  N  R  E  C  G  C  G  R  G  V  *  A  L  *  *  T  F  E  T  D  V  G  L  Y  S  L  G  F  S  Y  G  G  C  D  L  F  V  G  *  S  Y  T  R  W  G  N  S  F  *  S  V  L  E  E  C  K  V  V  V  A  *  T  I  H  S  S  C  H  G  V  K  G  *  G  C  S  D  A  G  S  S  F  S  Y  G  F  *  A  V  S  I  Y  F  V  I  D  V  E  L  L  G  L  C  V  H  Y  G  R  K  R  L  V  F  F  Q   : V  E  F  D  V  E  W  N  S  *  D  I  C  L  G  S  S  K  I  P  T  D  V  Y  R  I  R  I  L  H  K  L  C  I  F  S  R  T  S  V  G  S  N  I  F  G  R  S  E  Q  R  L  F  G  C  Y  R  L  I  M  I  I  F  S  S  L  R  D  L  S  L  L  S  F  Q  L  N  *  A  K  T  F  V  F  *  *  V  T  T  V  *  S  N  C  F  E  G  Y  C  H  Y  F  D  S  L  V  S  K  F  E  S  R  K  L  Q  I  F  *  C  L  K  L  I  *  N  I   </first_frame>
            <second_frame>  G  L  E  Q  Q  L  L  M  V  L  M  N  A  D  V  L  E  G  W  V  R  D  N  E  T  K  V  K  K  I  G  N  V  D  V  D  E  A  F  E  L  C  D  R  L  S  K  Q  M  L  D  C  T  A  S  D  L  A  M  E  D  V  I  Y  S  L  D  K  A  I  Q  D  G  A  I  P  F  D  Q  Y  L  R  N  V  R  L  L  S  R  E  Q  F  I  H  R  A  T  A  S  K  V  K  A  V  Q  M  Q  A  Q  V  S  H  M  A  S  R  L  S  Q  Y  T  L  S  *  M  L  N  Y  L  D  Y  V  C  T  M  D  G  R  G  *  F  F  F  K  :  W  N  L  M  W  S  G  T  V  E  T  Y  A  W  A  L  Q  R  Y  Q  L  M  C  I  G  F  E  S  S  T  S  Y  V  S  F  R  G  P  P  W  V  A  T  F  L  E  G  P  S  K  D  Y  L  G  A  I  V  *  *  *  S  F  F  L  P  *  E  I  S  P  C  *  V  F  S  *  T  E  Q  K  L  L  F  F  D  R  *  L  Q  F  E  V  I  A  L  K  A  T  V  I  I  L  I  H  L  F  R  N  S  R  V  E  N  Y  K  F  F  N  V  *  S  *  Y  R  T  F  </second_frame>
            <third_frame>   G  *  S  S  N  Y  *  W  F  *  *  M  L  M  C  W  K  G  G  L  E  I  T  K  R  K  L  R  K  *  G  M  W  M  W  T  R  R  L  S  F  V  I  D  F  R  N  R  C  W  I  V  Q  P  R  I  *  L  W  R  M  *  F  I  R  W  I  K  L  Y  K  M  G  Q  F  L  L  I  S  T  *  G  M  *  G  C  C  R  V  N  N  S  F  I  V  P  R  R  Q  R  L  R  L  F  R  C  R  L  K  F  L  I  W  L  L  G  C  L  N  I  L  C  H  R  C  *  I  T  W  I  M  C  A  L  W  T  E  E  V  S  F  F  S  S :   G  I  *  C  G  V  E  Q  L  R  H  M  L  G  L  F  K  D  T  N  *  C  V  S  D  S  N  P  P  Q  A  M  Y  L  F  E  D  L  R  G  *  Q  H  F  W  K  V  R  A  K  T  I  W  V  L  S  F  D  N  D  H  F  F  F  P  K  R  S  L  P  V  E  F  S  V  E  L  S  K  N  F  C  F  L  I  G  N  Y  S  L  K  *  L  L  *  R  L  L  S  L  F  *  F  T  C  F  E  I  R  E  S  K  I  T  N  F  L  M  F  E  V  D  I  E  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14247" stop="13876"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLEQQLLMVLMNADVLEGWVRDNETKVKKIGNVDVDEAFELCDRLSKQMLDCTASDLAMEDVIYSLDKAIQDGAIPFDQYLRNVRLLSREQFIHRATASKVKAVQMQAQVSHMASRLSQYTLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9660" stop="9457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DICLGSSKIPTDVYRIRILHKLCIFSRTSVGSNIFGRSEQRLFGCYRLIMIIFSSLRDLSLLSFQLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14225" e_stop="13816"/>
            <exon e_start="13364" e_stop="13346"/>
            <exon e_start="9689" e_stop="9401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.560" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.900" acc_prob="0.698" e_score="0.526"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="14225" e_stop="13816" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.560" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13815" i_stop="13365" i_length="451"/>
          </intron>
          <exon e_serial="2" e_score="0.526">
            <gDNA_exon_boundary e_start="13364" e_stop="13346" e_length="19"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.698">
            <gDNA_intron_boundary i_start="13345" i_stop="9690" i_length="3656"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="9689" e_stop="9401" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14225" stop="13850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14073" stop="13816"/>
              <exon start="13364" stop="13346"/>
              <exon start="9689" stop="9401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTTTTGATGAATGCTGATGTGTTGGAAGGGTGGGTTAGAGATAACGAAACGAAAGTTAAGAAAATAGGGAATGTGGATGTGGACGAGGCGTTTGAGCTTTGTGATAGACTTTCGAAACAGATGTTGGATTGTACAGCCTCGGATTTAGCTATGGAGGATGTGATTTATTCGTTGGATAAAGCTATACAAGATGGGGCAATTCCTTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGCGTGAACAATTCATTCATCGTGCCACGGCGTCAAAGGTTAAGGCTGTTCAGATGCAGGCTCAAGTTTCTCATATGGCTTCTAGGCTGTCTCAATATACTTTGTCATAGATGTTGAATTACTTGGATTATGTGTGCACTATGGACGGAAGAGGTTAGTTTTTTTTCAAG : TTAAAAAAAGCTCCTAAAT : TGGAATTTGATGTGGAGTGGAACAGTTGAGACATATGCTTGGGCTCTTCAAAGATACCAACTGATGTGTATCGGATTCGAATCCTCCACAAGCTATGTATCTTTTCGAGGACCTCCGTGGGTAGCAACATTTTTGGAAGGTCCGAGCAAAGACTATTTGGGTGCTATCGTTTGATAATGATCATTTTTTCTTCCCTAAGAGATCTCTCCCTGTTGAGTTTTCAGTTGAACTGAGCAAAAACTTTTGTTTTTTGATAGGTAACTACAGTTTGAAGTAATTGCTTTGAAGG</gDNA_template>
            <first_frame> W  F  *  *  M  L  M  C  W  K  G  G  L  E  I  T  K  R  K  L  R  K  *  G  M  W  M  W  T  R  R  L  S  F  V  I  D  F  R  N  R  C  W  I  V  Q  P  R  I  *  L  W  R  M  *  F  I  R  W  I  K  L  Y  K  M  G  Q  F  L  L  I  S  T  *  G  M  *  G  C  C  R  V  N  N  S  F  I  V  P  R  R  Q  R  L  R  L  F  R  C  R  L  K  F  L  I  W  L  L  G  C  L  N  I  L  C  H  R  C  *  I  T  W  I  M  C  A  L  W  T  E  E  V  S  F  F  S  S :   *  K  K  L  L  N  :  W  N  L  M  W  S  G  T  V  E  T  Y  A  W  A  L  Q  R  Y  Q  L  M  C  I  G  F  E  S  S  T  S  Y  V  S  F  R  G  P  P  W  V  A  T  F  L  E  G  P  S  K  D  Y  L  G  A  I  V  *  *  *  S  F  F  L  P  *  E  I  S  P  C  *  V  F  S  *  T  E  Q  K  L  L  F  F  D  R  *  L  Q  F  E  V  I  A  L  K  </first_frame>
            <second_frame>  G  F  D  E  C  *  C  V  G  R  V  G  *  R  *  R  N  E  S  *  E  N  R  E  C  G  C  G  R  G  V  *  A  L  *  *  T  F  E  T  D  V  G  L  Y  S  L  G  F  S  Y  G  G  C  D  L  F  V  G  *  S  Y  T  R  W  G  N  S  F  *  S  V  L  E  E  C  K  V  V  V  A  *  T  I  H  S  S  C  H  G  V  K  G  *  G  C  S  D  A  G  S  S  F  S  Y  G  F  *  A  V  S  I  Y  F  V  I  D  V  E  L  L  G  L  C  V  H  Y  G  R  K  R  L  V  F  F  Q   : V  K  K  S  S  *  I :   G  I  *  C  G  V  E  Q  L  R  H  M  L  G  L  F  K  D  T  N  *  C  V  S  D  S  N  P  P  Q  A  M  Y  L  F  E  D  L  R  G  *  Q  H  F  W  K  V  R  A  K  T  I  W  V  L  S  F  D  N  D  H  F  F  F  P  K  R  S  L  P  V  E  F  S  V  E  L  S  K  N  F  C  F  L  I  G  N  Y  S  L  K  *  L  L  *  R </second_frame>
            <third_frame>   V  L  M  N  A  D  V  L  E  G  W  V  R  D  N  E  T  K  V  K  K  I  G  N  V  D  V  D  E  A  F  E  L  C  D  R  L  S  K  Q  M  L  D  C  T  A  S  D  L  A  M  E  D  V  I  Y  S  L  D  K  A  I  Q  D  G  A  I  P  F  D  Q  Y  L  R  N  V  R  L  L  S  R  E  Q  F  I  H  R  A  T  A  S  K  V  K  A  V  Q  M  Q  A  Q  V  S  H  M  A  S  R  L  S  Q  Y  T  L  S  *  M  L  N  Y  L  D  Y  V  C  T  M  D  G  R  G  *  F  F  F  K  :  L  K  K  A  P  K   : L  E  F  D  V  E  W  N  S  *  D  I  C  L  G  S  S  K  I  P  T  D  V  Y  R  I  R  I  L  H  K  L  C  I  F  S  R  T  S  V  G  S  N  I  F  G  R  S  E  Q  R  L  F  G  C  Y  R  L  I  M  I  I  F  S  S  L  R  D  L  S  L  L  S  F  Q  L  N  *  A  K  T  F  V  F  *  *  V  T  T  V  *  S  N  C  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14223" stop="13876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLMNADVLEGWVRDNETKVKKIGNVDVDEAFELCDRLSKQMLDCTASDLAMEDVIYSLDKAIQDGAIPFDQYLRNVRLLSREQFIHRATASKVKAVQMQAQVSHMASRLSQYTLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9660" stop="9457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DICLGSSKIPTDVYRIRILHKLCIFSRTSVGSNIFGRSEQRLFGCYRLIMIIFSSLRDLSLLSFQLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15168" PGL_stop="14446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15168" e_stop="14446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15168" e_stop="14446" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15168" stop="14477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15136" stop="14446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15136" stop="14465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15136" stop="14475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15136" stop="14589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15131" stop="14500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15104" stop="14469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15087" stop="14609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAATCGAACCCTTAAAATCAACTTCAAATTCGCCGGAGCTTACCAAATCCGACGGCGTTTTCTCCTCTGATCACAATGACACCACCAACGCCGGCGGCGGCGATTCATTCTCCGTCATCTCCCCAATACACTCAACAATTCTTAAGCAATGTTCTCTCCCAACGAGGTCCTTCTTCTCTCCCTTACTCCGAAGACGTAAAATGGCTAATCCGTCAACACCTCGTTTCGTTGATCGACACGTGTCCTTCTCTTCAACCTAGAACCGCTACTTTCACTTACAACGACGGCAGAACTGTGAATCTCCTTCAGGCGAACGGCACAGTTCCGATGGTCTATCTAGATGCAACCTACAACATTCCGGTCATTATTTGGTTACTGGAATCTTACCCTCGTCAATCGCCGTTGGTATTCGTGAACCCAACGCGTAATATGGTCATCAAAGACTCACATCCATTTGTGAACTCTTCTGGTATTGTTTCAATCCCTTATTTAAAAAATTGGGTATATCCAAGTTCGAATCTTGTTGAATTAGCTCGTAATTTGAGTCATTTTTTTAGCCGTGATCCCCCTTTGTACACCAAACGGAACCCGAATCCGAGCCCAAACCCGCATCCTCCTCCGGGTACTAGTTTTTCGAATAGTGGGTCGACTCGTCCTGCGATACCACCTCGGGTGTATCCACCATCACCTTATGGGAGTGGGAGTGGTGGGGTAGTGGGG</gDNA_template>
            <first_frame> K  K  S  N  P  *  N  Q  L  Q  I  R  R  S  L  P  N  P  T  A  F  S  P  L  I  T  M  T  P  P  T  P  A  A  A  I  H  S  P  S  S  P  Q  Y  T  Q  Q  F  L  S  N  V  L  S  Q  R  G  P  S  S  L  P  Y  S  E  D  V  K  W  L  I  R  Q  H  L  V  S  L  I  D  T  C  P  S  L  Q  P  R  T  A  T  F  T  Y  N  D  G  R  T  V  N  L  L  Q  A  N  G  T  V  P  M  V  Y  L  D  A  T  Y  N  I  P  V  I  I  W  L  L  E  S  Y  P  R  Q  S  P  L  V  F  V  N  P  T  R  N  M  V  I  K  D  S  H  P  F  V  N  S  S  G  I  V  S  I  P  Y  L  K  N  W  V  Y  P  S  S  N  L  V  E  L  A  R  N  L  S  H  F  F  S  R  D  P  P  L  Y  T  K  R  N  P  N  P  S  P  N  P  H  P  P  P  G  T  S  F  S  N  S  G  S  T  R  P  A  I  P  P  R  V  Y  P  P  S  P  Y  G  S  G  S  G  G  V  V  G </first_frame>
            <second_frame>  K  N  R  T  L  K  I  N  F  K  F  A  G  A  Y  Q  I  R  R  R  F  L  L  *  S  Q  *  H  H  Q  R  R  R  R  R  F  I  L  R  H  L  P  N  T  L  N  N  S  *  A  M  F  S  P  N  E  V  L  L  L  S  L  T  P  K  T  *  N  G  *  S  V  N  T  S  F  R  *  S  T  R  V  L  L  F  N  L  E  P  L  L  S  L  T  T  T  A  E  L  *  I  S  F  R  R  T  A  Q  F  R  W  S  I  *  M  Q  P  T  T  F  R  S  L  F  G  Y  W  N  L  T  L  V  N  R  R  W  Y  S  *  T  Q  R  V  I  W  S  S  K  T  H  I  H  L  *  T  L  L  V  L  F  Q  S  L  I  *  K  I  G  Y  I  Q  V  R  I  L  L  N  *  L  V  I  *  V  I  F  L  A  V  I  P  L  C  T  P  N  G  T  R  I  R  A  Q  T  R  I  L  L  R  V  L  V  F  R  I  V  G  R  L  V  L  R  Y  H  L  G  C  I  H  H  H  L  M  G  V  G  V  V  G  *  W   </second_frame>
            <third_frame>   K  I  E  P  L  K  S  T  S  N  S  P  E  L  T  K  S  D  G  V  F  S  S  D  H  N  D  T  T  N  A  G  G  G  D  S  F  S  V  I  S  P  I  H  S  T  I  L  K  Q  C  S  L  P  T  R  S  F  F  S  P  L  L  R  R  R  K  M  A  N  P  S  T  P  R  F  V  D  R  H  V  S  F  S  S  T  *  N  R  Y  F  H  L  Q  R  R  Q  N  C  E  S  P  S  G  E  R  H  S  S  D  G  L  S  R  C  N  L  Q  H  S  G  H  Y  L  V  T  G  I  L  P  S  S  I  A  V  G  I  R  E  P  N  A  *  Y  G  H  Q  R  L  T  S  I  C  E  L  F  W  Y  C  F  N  P  L  F  K  K  L  G  I  S  K  F  E  S  C  *  I  S  S  *  F  E  S  F  F  *  P  *  S  P  F  V  H  Q  T  E  P  E  S  E  P  K  P  A  S  S  S  G  Y  *  F  F  E  *  W  V  D  S  S  C  D  T  T  S  G  V  S  T  I  T  L  W  E  W  E  W  W  G  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15150" stop="14446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQLQIRRSLPNPTAFSPLITMTPPTPAAAIHSPSSPQYTQQFLSNVLSQRGPSSLPYSEDVKWLIRQHLVSLIDTCPSLQPRTATFTYNDGRTVNLLQANGTVPMVYLDATYNIPVIIWLLESYPRQSPLVFVNPTRNMVIKDSHPFVNSSGIVSIPYLKNWVYPSSNLVELARNLSHFFSRDPPLYTKRNPNPSPNPHPPPGTSFSNSGSTRPAIPPRVYPPSPYGSGSGGVVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="28565" PGL_stop="23637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28565" e_stop="28472"/>
            <exon e_start="27187" e_stop="27032"/>
            <exon e_start="26886" e_stop="26489"/>
            <exon e_start="24935" e_stop="24926"/>
            <exon e_start="23682" e_stop="23637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.145" acc_prob="0.743" e_score="0.915"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.929"/>
          <exon-intron don_prob="0.000" acc_prob="0.866" e_score="0.902"/>
          <exon-intron don_prob="0.206" acc_prob="0.908" e_score="0.600"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="28565" e_stop="28472" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.145" acc_prob="0.743">
            <gDNA_intron_boundary i_start="28471" i_stop="27188" i_length="1284"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="27187" e_stop="27032" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27031" i_stop="26887" i_length="145"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="26886" e_stop="26489" e_length="398"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.866">
            <gDNA_intron_boundary i_start="26488" i_stop="24936" i_length="1553"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="24935" e_stop="24926" e_length="10"/>
          </exon>
          <intron i_serial="4" don_prob="0.206" acc_prob="0.908">
            <gDNA_intron_boundary i_start="24925" i_stop="23683" i_length="1243"/>
          </intron>
          <exon e_serial="5" e_score="0.565">
            <gDNA_exon_boundary e_start="23682" e_stop="23637" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28565" stop="28472"/>
              <exon start="27187" stop="27032"/>
              <exon start="26886" stop="26638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27126" stop="27032"/>
              <exon start="26886" stop="26489"/>
              <exon start="24935" stop="24926"/>
              <exon start="23682" stop="23637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCACAGCTCTCTATTAGCATTTACAAGCTTCAGTAACTTAGCCAGATCATAAGACTTGAAATCTTTGCCATAACAAAGGCTAATATCAAGGG : GTGTTTCAAGAGTTGCAAGGTAGTTTGATATAAATTTATGAGGATGCTCGACATGGCAGATAAAACCCATCTCTTTTAAAAGATGCCTCTCTGTTCTGATTAGGTCTGCTTTCAAATCAATATATTTTTTCGAAGATGTATCCAGATGTTCTACAG : TAAAAGCGATGAAGTAATACTTGACCAGTGGCCATTACAGCTTGAGGTAATCTGAGCAAAATCCCACTTTCTTGGATGAGATCACAACCATAGATTCGAAGTGCTGTTTTAGTAACTTCATCAATTCCATCTTTCCTAGAAGGCGAGTTTCTAAGCTGCTCCTCCACAAGATAGAATGTGTCTAGTGCCGTGTAAGTCATGGTTGAACTTCAAGAATCTCCACATTTCCCCATAAATGGGGTTCAGTGATGACGTTTGAGAGAAAAGAAGAAGAAGAAATCGTTGTGGAAGCACTAATTTCTTTTTTCGAACTACTTCTCTAGTTCGGTTCGGCCTAATATAGGTTTCGACTTTCATGTAATTTGTTTTATGGTTTACACATTTTCACTTTGACTATA : GAAAAAGGAA : TAGAAAAGAAAGGGAAGATGGAGTTGGAAGAAAACAAGAAGGAAAA</gDNA_template>
            <first_frame> N  H  S  S  L  L  A  F  T  S  F  S  N  L  A  R  S  *  D  L  K  S  L  P  *  Q  R  L  I  S  R   : G  V  S  R  V  A  R  *  F  D  I  N  L  *  G  C  S  T  W  Q  I  K  P  I  S  F  K  R  C  L  S  V  L  I  R  S  A  F  K  S  I  Y  F  F  E  D  V  S  R  C  S  T   : V  K  A  M  K  *  Y  L  T  S  G  H  Y  S  L  R  *  S  E  Q  N  P  T  F  L  D  E  I  T  T  I  D  S  K  C  C  F  S  N  F  I  N  S  I  F  P  R  R  R  V  S  K  L  L  L  H  K  I  E  C  V  *  C  R  V  S  H  G  *  T  S  R  I  S  T  F  P  H  K  W  G  S  V  M  T  F  E  R  K  E  E  E  E  I  V  V  E  A  L  I  S  F  F  E  L  L  L  *  F  G  S  A  *  Y  R  F  R  L  S  C  N  L  F  Y  G  L  H  I  F  T  L  T  I  :  E  K  G   : I  E  K  K  G  K  M  E  L  E  E  N  K  K  E   </first_frame>
            <second_frame>  I  T  A  L  Y  *  H  L  Q  A  S  V  T  *  P  D  H  K  T  *  N  L  C  H  N  K  G  *  Y  Q  G  :  V  F  Q  E  L  Q  G  S  L  I  *  I  Y  E  D  A  R  H  G  R  *  N  P  S  L  L  K  D  A  S  L  F  *  L  G  L  L  S  N  Q  Y  I  F  S  K  M  Y  P  D  V  L  Q  :  *  K  R  *  S  N  T  *  P  V  A  I  T  A  *  G  N  L  S  K  I  P  L  S  W  M  R  S  Q  P  *  I  R  S  A  V  L  V  T  S  S  I  P  S  F  L  E  G  E  F  L  S  C  S  S  T  R  *  N  V  S  S  A  V  *  V  M  V  E  L  Q  E  S  P  H  F  P  I  N  G  V  Q  *  *  R  L  R  E  K  K  K  K  K  S  L  W  K  H  *  F  L  F  S  N  Y  F  S  S  S  V  R  P  N  I  G  F  D  F  H  V  I  C  F  M  V  Y  T  F  S  L  *  L  * :   K  K  E  :  *  K  R  K  G  R  W  S  W  K  K  T  R  R  K  </second_frame>
            <third_frame>   S  Q  L  S  I  S  I  Y  K  L  Q  *  L  S  Q  I  I  R  L  E  I  F  A  I  T  K  A  N  I  K  G :   C  F  K  S  C  K  V  V  *  Y  K  F  M  R  M  L  D  M  A  D  K  T  H  L  F  *  K  M  P  L  C  S  D  *  V  C  F  Q  I  N  I  F  F  R  R  C  I  Q  M  F  Y  S :   K  S  D  E  V  I  L  D  Q  W  P  L  Q  L  E  V  I  *  A  K  S  H  F  L  G  *  D  H  N  H  R  F  E  V  L  F  *  *  L  H  Q  F  H  L  S  *  K  A  S  F  *  A  A  P  P  Q  D  R  M  C  L  V  P  C  K  S  W  L  N  F  K  N  L  H  I  S  P  *  M  G  F  S  D  D  V  *  E  K  R  R  R  R  N  R  C  G  S  T  N  F  F  F  R  T  T  S  L  V  R  F  G  L  I  *  V  S  T  F  M  *  F  V  L  W  F  T  H  F  H  F  D  Y   : R  K  R  N :   R  K  E  R  E  D  G  V  G  R  K  Q  E  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0049F08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24484" PGL_stop="29172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26670" e_stop="27341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="26670" e_stop="27341" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26670" stop="27097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26680" stop="27135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26839" stop="27246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26938" stop="27341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTTGAAGTTCAACCATGACTTACACGGCACTAGACACATTCTATCTTGTGGAGGAGCAGCTTAGAAACTCGCCTTCTAGGAAAGATGGAATTGATGAAGTTACTAAAACAGCACTTCGAATCTATGGTTGTGATCTCATCCAAGAAAGTGGGATTTTGCTCAGATTACCTCAAGCTGTAATGGCCACTGGTCAAGTATTACTTCATCGCTTTTAGTGCAAGAAATCATTTGCCCATTTTAATGTGAATAGTATTGCAGCTAGTTGTGTTTGGCTTGCATCAGAACTCAAAGAAGCCCGAGAAAAGCAACGCAGGTGTTTGTTGTTTTCCACAGAATGGAATATAAGAGAGAAAACTTACCTGTAGAACATCTGGATACATCTTCGAAAAAATATATTGATTTGAAAGCAGACCTAATCAGAACAGAGAGGCATCTTTTAAAAGAGATGGGTTTTATCTGCCATGTCGAGCATCCTCATAAATTTATATCAAACTACCTTGCAACTCTTGAAACACCTGCAGAATTGAGACAAGAAGCTTGGAACCTTGCAAATGACAGTTTGCGCACAACACTCGGTGTAAGATCAAGAATGAGGTTGTGGCCTGTGGAGTTGTATATGCTGCAGCCCGTAGATTTCAAGTGACCCTCCCAGAGAATCCTCCTTGGTGG</gDNA_template>
            <first_frame> I  L  E  V  Q  P  *  L  T  R  H  *  T  H  S  I  L  W  R  S  S  L  E  T  R  L  L  G  K  M  E  L  M  K  L  L  K  Q  H  F  E  S  M  V  V  I  S  S  K  K  V  G  F  C  S  D  Y  L  K  L  *  W  P  L  V  K  Y  Y  F  I  A  F  S  A  R  N  H  L  P  I  L  M  *  I  V  L  Q  L  V  V  F  G  L  H  Q  N  S  K  K  P  E  K  S  N  A  G  V  C  C  F  P  Q  N  G  I  *  E  R  K  L  T  C  R  T  S  G  Y  I  F  E  K  I  Y  *  F  E  S  R  P  N  Q  N  R  E  A  S  F  K  R  D  G  F  Y  L  P  C  R  A  S  S  *  I  Y  I  K  L  P  C  N  S  *  N  T  C  R  I  E  T  R  S  L  E  P  C  K  *  Q  F  A  H  N  T  R  C  K  I  K  N  E  V  V  A  C  G  V  V  Y  A  A  A  R  R  F  Q  V  T  L  P  E  N  P  P  W  W </first_frame>
            <second_frame>  F  L  K  F  N  H  D  L  H  G  T  R  H  I  L  S  C  G  G  A  A  *  K  L  A  F  *  E  R  W  N  *  *  S  Y  *  N  S  T  S  N  L  W  L  *  S  H  P  R  K  W  D  F  A  Q  I  T  S  S  C  N  G  H  W  S  S  I  T  S  S  L  L  V  Q  E  I  I  C  P  F  *  C  E  *  Y  C  S  *  L  C  L  A  C  I  R  T  Q  R  S  P  R  K  A  T  Q  V  F  V  V  F  H  R  M  E  Y  K  R  E  N  L  P  V  E  H  L  D  T  S  S  K  K  Y  I  D  L  K  A  D  L  I  R  T  E  R  H  L  L  K  E  M  G  F  I  C  H  V  E  H  P  H  K  F  I  S  N  Y  L  A  T  L  E  T  P  A  E  L  R  Q  E  A  W  N  L  A  N  D  S  L  R  T  T  L  G  V  R  S  R  M  R  L  W  P  V  E  L  Y  M  L  Q  P  V  D  F  K  *  P  S  Q  R  I  L  L  G   </second_frame>
            <third_frame>   S  *  S  S  T  M  T  Y  T  A  L  D  T  F  Y  L  V  E  E  Q  L  R  N  S  P  S  R  K  D  G  I  D  E  V  T  K  T  A  L  R  I  Y  G  C  D  L  I  Q  E  S  G  I  L  L  R  L  P  Q  A  V  M  A  T  G  Q  V  L  L  H  R  F  *  C  K  K  S  F  A  H  F  N  V  N  S  I  A  A  S  C  V  W  L  A  S  E  L  K  E  A  R  E  K  Q  R  R  C  L  L  F  S  T  E  W  N  I  R  E  K  T  Y  L  *  N  I  W  I  H  L  R  K  N  I  L  I  *  K  Q  T  *  S  E  Q  R  G  I  F  *  K  R  W  V  L  S  A  M  S  S  I  L  I  N  L  Y  Q  T  T  L  Q  L  L  K  H  L  Q  N  *  D  K  K  L  G  T  L  Q  M  T  V  C  A  Q  H  S  V  *  D  Q  E  *  G  C  G  L  W  S  C  I  C  C  S  P  *  I  S  S  D  P  P  R  E  S  S  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26935" stop="27315"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCLACIRTQRSPRKATQVFVVFHRMEYKRENLPVEHLDTSSKKYIDLKADLIRTERHLLKEMGFICHVEHPHKFISNYLATLETPAELRQEAWNLANDSLRTTLGVRSRMRLWPVELYMLQPVDFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26678" stop="26887"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSTMTYTALDTFYLVEEQLRNSPSRKDGIDEVTKTALRIYGCDLIQESGILLRLPQAVMATGQVLLHRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24484" e_stop="24921"/>
            <exon e_start="25334" e_stop="25413"/>
            <exon e_start="25647" e_stop="25745"/>
            <exon e_start="25842" e_stop="25940"/>
            <exon e_start="26015" e_stop="26113"/>
            <exon e_start="26191" e_stop="26289"/>
            <exon e_start="28459" e_stop="28913"/>
            <exon e_start="29154" e_stop="29172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.937" e_score="0.941"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.987" e_score="0.952"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.743" e_score="0.991"/>
          <exon-only e_score="0.421"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="24484" e_stop="24921" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.937">
            <gDNA_intron_boundary i_start="24922" i_stop="25333" i_length="412"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25334" e_stop="25413" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25414" i_stop="25646" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25647" e_stop="25745" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25746" i_stop="25841" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.952">
            <gDNA_exon_boundary e_start="25842" e_stop="25940" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.987">
            <gDNA_intron_boundary i_start="25941" i_stop="26014" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26015" e_stop="26113" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26114" i_stop="26190" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26191" e_stop="26289" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26290" i_stop="28458" i_length="2169"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="28459" e_stop="28913" e_length="455"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.743">
            <gDNA_intron_boundary i_start="28914" i_stop="29153" i_length="240"/>
          </intron>
          <exon e_serial="8" e_score="0.421">
            <gDNA_exon_boundary e_start="29154" e_stop="29172" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24484" stop="24921"/>
              <exon start="25334" stop="25413"/>
              <exon start="25647" stop="25662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24573" stop="24921"/>
              <exon start="25334" stop="25413"/>
              <exon start="25647" stop="25745"/>
              <exon start="25842" stop="25924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25907" stop="25940"/>
              <exon start="26015" stop="26113"/>
              <exon start="26191" stop="26289"/>
              <exon start="28459" stop="28913"/>
              <exon start="29154" stop="29172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATCCAAGTTGTTGATCAATGGGAATCTTCAATTTGGTGTTATAGTTTAGTATAAAGATTGAAAATGGAGAAAATAATGGTGTTGCAGTGTAATTCATCTTCTCTATTTACGCAGCTATGGCCAATGACAGTTACAGCTACGGCTTATACCTGCAGGTTTAGCTGCTCTAATGTTGTTTCTCACAGATTTACAAGAAGAATTAACATGGGGTTTCGTTCTTTTCAAGAAATTTCTACAAGGAATAGTGTTGTTAACTTAAGAAAAGCTCATTTTTGGGAAGATCCTGATGATGGTAGTGATAGTGAAGAAGAAGAAGAAGAAGAAGAGGAGAGGGAAGAAGATATGGATGTTGAGAGTAGCTTTGAATATGAAGAAAATAGAGCTATGGACAATTCTACAAATGGTTTGTCTAACAGGGAAGATGAGTTTGTGAAAG : AAGTTGAACAGCTTTTGAGTCCAGAGGAAAGGGAAATTTTGTATCACAATCAAACTCCAGAGCTGGATAAGATATCAACT : GAAAAATGGAACCCTCTTCACACTTTTGCACTAGCAGGGCAGATACGATTTATGGATAGACTTCTAGAGGAGGGTCTTGATATTGATGCCGTTGACAAG : GAAGGGCAAACAGCTCTTCACCATGCCGTTTTTGGTAAAAAAGAGGCTGTGATCAGTCATCTTCTAAGAAAAGGTGCAAACCCTCAAGTCAGGGATACG : GATGGTGTCACCCCTCTACATTATGCAGTTCAAGTAGGAGCCTTGCAAACGGTTAAAATGTTAATCAAATACAAGGTTGACGTGAATGCTGCTGATAAT : GTTGGTTGGACGCCACTGCACGTGGCCATGCAAAGCAGAAACAGAGACATAGCAAAAGTTCTTCTTGTCAATGGAGCAGATAAGTACAGAAAGAATAAG : GATGGTAAAACACCCCTTGATATTAGCCTTTGTTATGGCAAAGATTTCAAGTCTTATGATCTGGCTAAGTTACTGAAGCTTGTAAATGCTAATAGAGAGCTGTGATTTGCATTTTTACTCCCATCAAAGATGAAGACAATCAATCATAGTCAAAGAGGAAGTTCTTCAACGCGTTGAGACGGATACATAGAAACACAATTCAGAGCAACTTTTGGACATGGAATCACTAGAATTTTAGAATATTTGGGCAGTTGTGTAGTCAGTCTTGCAACAGATTTGTAAAAATAGAACAGAACTTGTTTTCTTATGATATGTATGTGCTTGTGTAGATTTTAGCACATTATATTGTGCTTGCATCAGGTGAATAGGCAAGTCATGTATTTACATGGACTTTACCCCTACCTCACGGTAATGAAGAAAAAAAAAGCAGTACAATATGGAAGTGTCACAAATAT : GAACAGGTCAATCGCCGCT</gDNA_template>
            <first_frame> L  S  K  L  L  I  N  G  N  L  Q  F  G  V  I  V  *  Y  K  D  *  K  W  R  K  *  W  C  C  S  V  I  H  L  L  Y  L  R  S  Y  G  Q  *  Q  L  Q  L  R  L  I  P  A  G  L  A  A  L  M  L  F  L  T  D  L  Q  E  E  L  T  W  G  F  V  L  F  K  K  F  L  Q  G  I  V  L  L  T  *  E  K  L  I  F  G  K  I  L  M  M  V  V  I  V  K  K  K  K  K  K  K  R  R  G  K  K  I  W  M  L  R  V  A  L  N  M  K  K  I  E  L  W  T  I  L  Q  M  V  C  L  T  G  K  M  S  L  *  K  :  K  L  N  S  F  *  V  Q  R  K  G  K  F  C  I  T  I  K  L  Q  S  W  I  R  Y  Q  L :   K  N  G  T  L  F  T  L  L  H  *  Q  G  R  Y  D  L  W  I  D  F  *  R  R  V  L  I  L  M  P  L  T  R :   K  G  K  Q  L  F  T  M  P  F  L  V  K  K  R  L  *  S  V  I  F  *  E  K  V  Q  T  L  K  S  G  I  R :   M  V  S  P  L  Y  I  M  Q  F  K  *  E  P  C  K  R  L  K  C  *  S  N  T  R  L  T  *  M  L  L  I  M :   L  V  G  R  H  C  T  W  P  C  K  A  E  T  E  T  *  Q  K  F  F  L  S  M  E  Q  I  S  T  E  R  I  R :   M  V  K  H  P  L  I  L  A  F  V  M  A  K  I  S  S  L  M  I  W  L  S  Y  *  S  L  *  M  L  I  E  S  C  D  L  H  F  Y  S  H  Q  R  *  R  Q  S  I  I  V  K  E  E  V  L  Q  R  V  E  T  D  T  *  K  H  N  S  E  Q  L  L  D  M  E  S  L  E  F  *  N  I  W  A  V  V  *  S  V  L  Q  Q  I  C  K  N  R  T  E  L  V  F  L  *  Y  V  C  A  C  V  D  F  S  T  L  Y  C  A  C  I  R  *  I  G  K  S  C  I  Y  M  D  F  T  P  T  S  R  *  *  R  K  K  K  Q  Y  N  M  E  V  S  Q  I   : *  T  G  Q  S  P   </first_frame>
            <second_frame>  Y  P  S  C  *  S  M  G  I  F  N  L  V  L  *  F  S  I  K  I  E  N  G  E  N  N  G  V  A  V  *  F  I  F  S  I  Y  A  A  M  A  N  D  S  Y  S  Y  G  L  Y  L  Q  V  *  L  L  *  C  C  F  S  Q  I  Y  K  K  N  *  H  G  V  S  F  F  S  R  N  F  Y  K  E  *  C  C  *  L  K  K  S  S  F  L  G  R  S  *  *  W  *  *  *  *  R  R  R  R  R  R  R  G  E  G  R  R  Y  G  C  *  E  *  L  *  I  *  R  K  *  S  Y  G  Q  F  Y  K  W  F  V  *  Q  G  R  *  V  C  E  R :   S  *  T  A  F  E  S  R  G  K  G  N  F  V  S  Q  S  N  S  R  A  G  *  D  I  N   : *  K  M  E  P  S  S  H  F  C  T  S  R  A  D  T  I  Y  G  *  T  S  R  G  G  S  *  Y  *  C  R  *  Q   : G  R  A  N  S  S  S  P  C  R  F  W  *  K  R  G  C  D  Q  S  S  S  K  K  R  C  K  P  S  S  Q  G  Y   : G  W  C  H  P  S  T  L  C  S  S  S  R  S  L  A  N  G  *  N  V  N  Q  I  Q  G  *  R  E  C  C  *  *   : C  W  L  D  A  T  A  R  G  H  A  K  Q  K  Q  R  H  S  K  S  S  S  C  Q  W  S  R  *  V  Q  K  E  *   : G  W  *  N  T  P  *  Y  *  P  L  L  W  Q  R  F  Q  V  L  *  S  G  *  V  T  E  A  C  K  C  *  *  R  A  V  I  C  I  F  T  P  I  K  D  E  D  N  Q  S  *  S  K  R  K  F  F  N  A  L  R  R  I  H  R  N  T  I  Q  S  N  F  W  T  W  N  H  *  N  F  R  I  F  G  Q  L  C  S  Q  S  C  N  R  F  V  K  I  E  Q  N  L  F  S  Y  D  M  Y  V  L  V  *  I  L  A  H  Y  I  V  L  A  S  G  E  *  A  S  H  V  F  T  W  T  L  P  L  P  H  G  N  E  E  K  K  S  S  T  I  W  K  C  H  K  Y  :  E  Q  V  N  R  R  </second_frame>
            <third_frame>   I  Q  V  V  D  Q  W  E  S  S  I  W  C  Y  S  L  V  *  R  L  K  M  E  K  I  M  V  L  Q  C  N  S  S  S  L  F  T  Q  L  W  P  M  T  V  T  A  T  A  Y  T  C  R  F  S  C  S  N  V  V  S  H  R  F  T  R  R  I  N  M  G  F  R  S  F  Q  E  I  S  T  R  N  S  V  V  N  L  R  K  A  H  F  W  E  D  P  D  D  G  S  D  S  E  E  E  E  E  E  E  E  E  R  E  E  D  M  D  V  E  S  S  F  E  Y  E  E  N  R  A  M  D  N  S  T  N  G  L  S  N  R  E  D  E  F  V  K   : E  V  E  Q  L  L  S  P  E  E  R  E  I  L  Y  H  N  Q  T  P  E  L  D  K  I  S  T  :  E  K  W  N  P  L  H  T  F  A  L  A  G  Q  I  R  F  M  D  R  L  L  E  E  G  L  D  I  D  A  V  D  K  :  E  G  Q  T  A  L  H  H  A  V  F  G  K  K  E  A  V  I  S  H  L  L  R  K  G  A  N  P  Q  V  R  D  T  :  D  G  V  T  P  L  H  Y  A  V  Q  V  G  A  L  Q  T  V  K  M  L  I  K  Y  K  V  D  V  N  A  A  D  N  :  V  G  W  T  P  L  H  V  A  M  Q  S  R  N  R  D  I  A  K  V  L  L  V  N  G  A  D  K  Y  R  K  N  K  :  D  G  K  T  P  L  D  I  S  L  C  Y  G  K  D  F  K  S  Y  D  L  A  K  L  L  K  L  V  N  A  N  R  E  L  *  F  A  F  L  L  P  S  K  M  K  T  I  N  H  S  Q  R  G  S  S  S  T  R  *  D  G  Y  I  E  T  Q  F  R  A  T  F  G  H  G  I  T  R  I  L  E  Y  L  G  S  C  V  V  S  L  A  T  D  L  *  K  *  N  R  T  C  F  L  M  I  C  M  C  L  C  R  F  *  H  I  I  L  C  L  H  Q  V  N  R  Q  V  M  Y  L  H  G  L  Y  P  Y  L  T  V  M  K  K  K  K  A  V  Q  Y  G  S  V  T  N  M :   N  R  S  I  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24540" stop="24921"/>
                    <exon start="25334" stop="25413"/>
                    <exon start="25647" stop="25745"/>
                    <exon start="25842" stop="25940"/>
                    <exon start="26015" stop="26113"/>
                    <exon start="26191" stop="26289"/>
                    <exon start="28459" stop="28563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLKMEKIMVLQCNSSSLFTQLWPMTVTATAYTCRFSCSNVVSHRFTRRINMGFRSFQEISTRNSVVNLRKAHFWEDPDDGSDSEEEEEEEEEREEDMDVESSFEYEENRAMDNSTNGLSNREDEFVKEVEQLLSPEEREILYHNQTPELDKISTEKWNPLHTFALAGQIRFMDRLLEEGLDIDAVDKEGQTALHHAVFGKKEAVISHLLRKGANPQVRDTDGVTPLHYAVQVGALQTVKMLIKYKVDVNAADNVGWTPLHVAMQSRNRDIAKVLLVNGADKYRKNKDGKTPLDISLCYGKDFKSYDLAKLLKLVNANREL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32138" PGL_stop="28904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32121" e_stop="32030"/>
            <exon e_start="30622" e_stop="30481"/>
            <exon e_start="29896" e_stop="29799"/>
            <exon e_start="29692" e_stop="29505"/>
            <exon e_start="29316" e_stop="28981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.902"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.789"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.986"/>
          <exon-intron don_prob="0.991" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="32121" e_stop="32030" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32029" i_stop="30623" i_length="1407"/>
          </intron>
          <exon e_serial="2" e_score="0.789">
            <gDNA_exon_boundary e_start="30622" e_stop="30481" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30480" i_stop="29897" i_length="584"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="29896" e_stop="29799" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29692" e_stop="29505" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="0.940">
            <gDNA_exon_boundary e_start="29316" e_stop="28981" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32121" stop="32030"/>
              <exon start="30622" stop="30481"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="29152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32105" stop="32030"/>
              <exon start="30622" stop="30481"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="29044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32105" stop="32030"/>
              <exon start="30622" stop="30481"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="29133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32105" stop="32030"/>
              <exon start="30622" stop="30481"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="29225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32105" stop="32030"/>
              <exon start="30622" stop="30481"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="29225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29868" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="28981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG : TTTGCTATTTTGCTGTTTTATTTTCTCCCGATCATCAGATACTTCTCTTTCGAGCCAAGAGTCTATCGGAAACAATCTCTTTACCCCACAAGTATAGGGTACATCCTATCATCCCTGGATCCCATGGGGATTAATTGGGTAT : AGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAG : CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG : CCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAAACGATATCTAGCACATCACGATCAGTTAAAACGCTAGAGGCAATGTTTGATGAGATAACAATTATGATTGCGGTACCTGTTGTGAACTGCGTAACC</gDNA_template>
            <first_frame> F  R  P  H  R  R  C  L  R  I  W  R  R  R  S  H  *  H  R  R  *  V  *  S  E  V  N  I  R  H  R :   L  L  F  C  C  F  I  F  S  R  S  S  D  T  S  L  S  S  Q  E  S  I  G  N  N  L  F  T  P  Q  V  *  G  T  S  Y  H  P  W  I  P  W  G  L  I  G  Y  :  S  H  A  *  S  E  N  K  P  C  Q  I  S  R  G  M  G  V  D  *  T  Y  S  *  *  T  P  S  K  N  E  G  S :   *  E  *  S  S  *  W  Q  K  K  M  R  G  F  V  A  Y  F  Q  N  C  S  S  E  E  P  V  Y  F  *  S  L  S  Q  E  E  R  D  L  Q  G  I  I  *  V  L  H  G  S  R  I  C  *  S  K  F  D  C  E  M  E  K   : A  W  L  *  A  S  L  L  F  E  V  H  A  T  A  G  S  Q  L  S  N  N  L  C  L  S  S  S  T  A  S  K  G  G  E  G  Y  R  M  C  P  L  R  L  *  R  L  C  K  R  R  L  T  C  S  L  E  S  E  N  A  L  F  *  M  L  L  Y  L  *  *  T  S  V  Y  S  K  H  *  S  N  D  I  *  H  I  T  I  S  *  N  A  R  G  N  V  *  *  D  N  N  Y  D  C  G  T  C  C  E  L  R  N  </first_frame>
            <second_frame>  S  D  L  T  G  A  A  S  A  S  G  D  V  V  L  T  D  T  G  V  K  F  D  R  K  L  I  F  D  T   : V  C  Y  F  A  V  L  F  S  P  D  H  Q  I  L  L  F  R  A  K  S  L  S  E  T  I  S  L  P  H  K  Y  R  V  H  P  I  I  P  G  S  H  G  D  *  L  G  I :   V  M  P  K  V  K  T  N  R  V  K  Y  P  E  G  W  E  L  I  E  P  T  L  S  E  L  Q  A  K  M  R  E   : A  E  N  D  P  H  D  G  K  R  K  C  E  A  L  W  P  I  F  K  I  A  H  Q  K  S  R  Y  I  F  D  L  F  H  R  R  K  E  I  S  K  E  L  Y  E  F  C  M  D  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  R  C  M  Q  P  R  D  H  N  F  Q  T  T  C  V  C  R  V  P  Q  H  L  R  E  E  K  V  I  E  C  V  H  C  G  C  K  G  C  A  S  G  D  *  P  V  P  *  N  Q  K  M  H  C  F  R  C  Y  C  T  C  S  K  P  L  S  I  Q  S  T  D  Q  T  I  S  S  T  S  R  S  V  K  T  L  E  A  M  F  D  E  I  T  I  M  I  A  V  P  V  V  N  C  V  T </second_frame>
            <third_frame>   Q  T  S  P  A  L  P  P  H  L  A  T  S  F  S  L  T  P  A  L  S  L  I  G  S  *  Y  S  T  P  :  F  A  I  L  L  F  Y  F  L  P  I  I  R  Y  F  S  F  E  P  R  V  Y  R  K  Q  S  L  Y  P  T  S  I  G  Y  I  L  S  S  L  D  P  M  G  I  N  W  V   : *  S  C  L  K  *  K  Q  T  V  S  N  I  Q  R  D  G  S  *  L  N  L  L  L  V  N  S  K  Q  K  *  G  K  :  L  R  M  I  L  M  M  A  K  E  N  A  R  L  C  G  L  F  S  K  L  L  I  R  R  A  G  I  F  L  I  S  F  T  G  G  K  R  S  P  R  N  Y  M  S  F  A  W  I  K  D  M  L  I  E  I  *  L  R  N  G  K  S :   L  V  M  S  V  S  A  V  *  G  A  C  N  R  G  I  T  T  F  K  Q  P  V  S  V  E  F  H  S  I  *  G  R  R  R  L  *  N  V  S  I  A  A  V  K  V  V  Q  A  A  I  D  L  F  L  R  I  R  K  C  I  V  L  D  V  I  V  L  V  V  N  L  C  L  F  K  A  L  I  K  R  Y  L  A  H  H  D  Q  L  K  R  *  R  Q  C  L  M  R  *  Q  L  *  L  R  Y  L  L  *  T  A  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30488" stop="30481"/>
                    <exon start="29896" stop="29799"/>
                    <exon start="29692" stop="29505"/>
                    <exon start="29316" stop="29161"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGIVMPKVKTNRVKYPEGWELIEPTLSELQAKMREAENDPHDGKRKCEALWPIFKIAHQKSRYIFDLFHRRKEISKELYEFCMDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPQHLREEKVIECVHCGCKGCASGD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32120" stop="32030"/>
                    <exon start="30622" stop="30489"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDLTGAASASGDVVLTDTGVKFDRKLIFDTVCYFAVLFSPDHQILLFRAKSLSETISLPHKYRVHPIIPGSHGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32138" e_stop="32030"/>
            <exon e_start="29896" e_stop="29799"/>
            <exon e_start="29692" e_stop="29505"/>
            <exon e_start="29316" e_stop="28904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32138" e_stop="32030" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32029" i_stop="29897" i_length="2133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29896" e_stop="29799" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29692" e_stop="29505" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29316" e_stop="28904" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32138" stop="32030"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="28904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32123" stop="32030"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32104" stop="32030"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="29255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29868" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="28981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCGAAGTTTCCAGATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG : AGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAG : CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG : CCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAAACGATATCTAGCACATCACGATCAGTTAAAACGCTAGAGGCAATGTTTGATGAGATAACAATTATGATTGCGGTACCTGTTGTGAACTGCGTAACCATAGCGTTAAAATACTTTGGATATTCTTGTTTGCAAGTAATCATATGTTACAGCTATATTAGGATACATATTTGTGA</gDNA_template>
            <first_frame> K  S  K  F  P  D  S  D  L  T  G  A  A  S  A  S  G  D  V  V  L  T  D  T  G  V  K  F  D  R  K  L  I  F  D  T   : E  S  C  L  K  *  K  Q  T  V  S  N  I  Q  R  D  G  S  *  L  N  L  L  L  V  N  S  K  Q  K  *  G  K  :  L  R  M  I  L  M  M  A  K  E  N  A  R  L  C  G  L  F  S  K  L  L  I  R  R  A  G  I  F  L  I  S  F  T  G  G  K  R  S  P  R  N  Y  M  S  F  A  W  I  K  D  M  L  I  E  I  *  L  R  N  G  K  S :   L  V  M  S  V  S  A  V  *  G  A  C  N  R  G  I  T  T  F  K  Q  P  V  S  V  E  F  H  S  I  *  G  R  R  R  L  *  N  V  S  I  A  A  V  K  V  V  Q  A  A  I  D  L  F  L  R  I  R  K  C  I  V  L  D  V  I  V  L  V  V  N  L  C  L  F  K  A  L  I  K  R  Y  L  A  H  H  D  Q  L  K  R  *  R  Q  C  L  M  R  *  Q  L  *  L  R  Y  L  L  *  T  A  *  P  *  R  *  N  T  L  D  I  L  V  C  K  *  S  Y  V  T  A  I  L  G  Y  I  F  V  </first_frame>
            <second_frame>  N  R  S  F  Q  I  Q  T  S  P  A  L  P  P  H  L  A  T  S  F  S  L  T  P  A  L  S  L  I  G  S  *  Y  S  T  P  :  S  H  A  *  S  E  N  K  P  C  Q  I  S  R  G  M  G  V  D  *  T  Y  S  *  *  T  P  S  K  N  E  G  S :   *  E  *  S  S  *  W  Q  K  K  M  R  G  F  V  A  Y  F  Q  N  C  S  S  E  E  P  V  Y  F  *  S  L  S  Q  E  E  R  D  L  Q  G  I  I  *  V  L  H  G  S  R  I  C  *  S  K  F  D  C  E  M  E  K   : A  W  L  *  A  S  L  L  F  E  V  H  A  T  A  G  S  Q  L  S  N  N  L  C  L  S  S  S  T  A  S  K  G  G  E  G  Y  R  M  C  P  L  R  L  *  R  L  C  K  R  R  L  T  C  S  L  E  S  E  N  A  L  F  *  M  L  L  Y  L  *  *  T  S  V  Y  S  K  H  *  S  N  D  I  *  H  I  T  I  S  *  N  A  R  G  N  V  *  *  D  N  N  Y  D  C  G  T  C  C  E  L  R  N  H  S  V  K  I  L  W  I  F  L  F  A  S  N  H  M  L  Q  L  Y  *  D  T  Y  L  * </second_frame>
            <third_frame>   I  E  V  S  R  F  R  P  H  R  R  C  L  R  I  W  R  R  R  S  H  *  H  R  R  *  V  *  S  E  V  N  I  R  H  R :   V  M  P  K  V  K  T  N  R  V  K  Y  P  E  G  W  E  L  I  E  P  T  L  S  E  L  Q  A  K  M  R  E   : A  E  N  D  P  H  D  G  K  R  K  C  E  A  L  W  P  I  F  K  I  A  H  Q  K  S  R  Y  I  F  D  L  F  H  R  R  K  E  I  S  K  E  L  Y  E  F  C  M  D  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  R  C  M  Q  P  R  D  H  N  F  Q  T  T  C  V  C  R  V  P  Q  H  L  R  E  E  K  V  I  E  C  V  H  C  G  C  K  G  C  A  S  G  D  *  P  V  P  *  N  Q  K  M  H  C  F  R  C  Y  C  T  C  S  K  P  L  S  I  Q  S  T  D  Q  T  I  S  S  T  S  R  S  V  K  T  L  E  A  M  F  D  E  I  T  I  M  I  A  V  P  V  V  N  C  V  T  I  A  L  K  Y  F  G  Y  S  C  L  Q  V  I  I  C  Y  S  Y  I  R  I  H  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32052" stop="32030"/>
                    <exon start="29896" stop="29799"/>
                    <exon start="29692" stop="29505"/>
                    <exon start="29316" stop="29161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEVNIRHRVMPKVKTNRVKYPEGWELIEPTLSELQAKMREAENDPHDGKRKCEALWPIFKIAHQKSRYIFDLFHRRKEISKELYEFCMDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPQHLREEKVIECVHCGCKGCASGD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29148" stop="28906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQKMHCFRCYCTCSKPLSIQSTDQTISSTSRSVKTLEAMFDEITIMIAVPVVNCVTIALKYFGYSCLQVIICYSYIRIHIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32125" e_stop="32030"/>
            <exon e_start="31517" e_stop="31513"/>
            <exon e_start="29896" e_stop="29799"/>
            <exon e_start="29692" e_stop="29505"/>
            <exon e_start="29316" e_stop="28981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.906"/>
          <exon-intron don_prob="0.660" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.986"/>
          <exon-intron don_prob="0.991" acc_prob="0.992" e_score="0.989"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="32125" e_stop="32030" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32029" i_stop="31518" i_length="512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31517" e_stop="31513" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.660" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31512" i_stop="29897" i_length="1616"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="29896" e_stop="29799" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29798" i_stop="29693" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="29692" e_stop="29505" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29504" i_stop="29317" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="0.940">
            <gDNA_exon_boundary e_start="29316" e_stop="28981" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32125" stop="32030"/>
              <exon start="31517" stop="31513"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32123" stop="32030"/>
              <exon start="31517" stop="31513"/>
              <exon start="29896" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="29010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29868" stop="29799"/>
              <exon start="29692" stop="29505"/>
              <exon start="29316" stop="28981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTCAGACCTCACCGGCGCTGCCTCCGCATCTGGCGACGTCGTTCTCACTGACACCGGCGTTAAGTTTGATCGGAAGTTAATATTCGACACCG : CTAAG : AGTCATGCCTAAAGTGAAAACAAACCGTGTCAAATATCCAGAGGGATGGGAGTTGATTGAACCTACTCTTAGTGAACTCCAAGCAAAAATGAGGGAAG : CTGAGAATGATCCTCATGATGGCAAAAGAAAATGCGAGGCTTTGTGGCCTATTTTCAAAATTGCTCATCAGAAGAGCCGGTATATTTTTGATCTCTTTCACAGGAGGAAAGAGATCTCCAAGGAATTATATGAGTTTTGCATGGATCAAGGATATGCTGATCGAAATTTGATTGCGAAATGGAAAAAG : CCTGGTTATGAGCGTCTCTGCTGTTTGAGGTGCATGCAACCGCGGGATCACAACTTTCAAACAACCTGTGTCTGTCGAGTTCCACAGCATCTAAGGGAGGAGAAGGTTATAGAATGTGTCCATTGCGGCTGTAAAGGTTGTGCAAGCGGCGATTGACCTGTTCCTTAGAATCAGAAAATGCATTGTTTTAGATGTTATTGTACTTGTAGTAAACCTCTGTCTATTCAAAGCACTGATCAAACGATATCTAGCACATCACGATCAGTTAAAACGCTAGAGGCAATGTTTGATGAGATAACAATTATGATTGCGGTACCTGTTGTGAACTGCGTAACC</gDNA_template>
            <first_frame> Q  I  Q  T  S  P  A  L  P  P  H  L  A  T  S  F  S  L  T  P  A  L  S  L  I  G  S  *  Y  S  T  P  :  L  R :   V  M  P  K  V  K  T  N  R  V  K  Y  P  E  G  W  E  L  I  E  P  T  L  S  E  L  Q  A  K  M  R  E   : A  E  N  D  P  H  D  G  K  R  K  C  E  A  L  W  P  I  F  K  I  A  H  Q  K  S  R  Y  I  F  D  L  F  H  R  R  K  E  I  S  K  E  L  Y  E  F  C  M  D  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  R  C  M  Q  P  R  D  H  N  F  Q  T  T  C  V  C  R  V  P  Q  H  L  R  E  E  K  V  I  E  C  V  H  C  G  C  K  G  C  A  S  G  D  *  P  V  P  *  N  Q  K  M  H  C  F  R  C  Y  C  T  C  S  K  P  L  S  I  Q  S  T  D  Q  T  I  S  S  T  S  R  S  V  K  T  L  E  A  M  F  D  E  I  T  I  M  I  A  V  P  V  V  N  C  V  T </first_frame>
            <second_frame>  R  F  R  P  H  R  R  C  L  R  I  W  R  R  R  S  H  *  H  R  R  *  V  *  S  E  V  N  I  R  H  R :   *   : E  S  C  L  K  *  K  Q  T  V  S  N  I  Q  R  D  G  S  *  L  N  L  L  L  V  N  S  K  Q  K  *  G  K  :  L  R  M  I  L  M  M  A  K  E  N  A  R  L  C  G  L  F  S  K  L  L  I  R  R  A  G  I  F  L  I  S  F  T  G  G  K  R  S  P  R  N  Y  M  S  F  A  W  I  K  D  M  L  I  E  I  *  L  R  N  G  K  S :   L  V  M  S  V  S  A  V  *  G  A  C  N  R  G  I  T  T  F  K  Q  P  V  S  V  E  F  H  S  I  *  G  R  R  R  L  *  N  V  S  I  A  A  V  K  V  V  Q  A  A  I  D  L  F  L  R  I  R  K  C  I  V  L  D  V  I  V  L  V  V  N  L  C  L  F  K  A  L  I  K  R  Y  L  A  H  H  D  Q  L  K  R  *  R  Q  C  L  M  R  *  Q  L  *  L  R  Y  L  L  *  T  A  *   </second_frame>
            <third_frame>   D  S  D  L  T  G  A  A  S  A  S  G  D  V  V  L  T  D  T  G  V  K  F  D  R  K  L  I  F  D  T   : A  K  :  S  H  A  *  S  E  N  K  P  C  Q  I  S  R  G  M  G  V  D  *  T  Y  S  *  *  T  P  S  K  N  E  G  S :   *  E  *  S  S  *  W  Q  K  K  M  R  G  F  V  A  Y  F  Q  N  C  S  S  E  E  P  V  Y  F  *  S  L  S  Q  E  E  R  D  L  Q  G  I  I  *  V  L  H  G  S  R  I  C  *  S  K  F  D  C  E  M  E  K   : A  W  L  *  A  S  L  L  F  E  V  H  A  T  A  G  S  Q  L  S  N  N  L  C  L  S  S  S  T  A  S  K  G  G  E  G  Y  R  M  C  P  L  R  L  *  R  L  C  K  R  R  L  T  C  S  L  E  S  E  N  A  L  F  *  M  L  L  Y  L  *  *  T  S  V  Y  S  K  H  *  S  N  D  I  *  H  I  T  I  S  *  N  A  R  G  N  V  *  *  D  N  N  Y  D  C  G  T  C  C  E  L  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32041" stop="32030"/>
                    <exon start="31517" stop="31513"/>
                    <exon start="29896" stop="29799"/>
                    <exon start="29692" stop="29505"/>
                    <exon start="29316" stop="29161"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSTPLRVMPKVKTNRVKYPEGWELIEPTLSELQAKMREAENDPHDGKRKCEALWPIFKIAHQKSRYIFDLFHRRKEISKELYEFCMDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPQHLREEKVIECVHCGCKGCASGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45402" PGL_stop="46129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45402" e_stop="46129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="45402" e_stop="46129" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45402" stop="46129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45402" stop="45802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTACGTTTGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATTCCAAATCTTGATAAAAACCTAATCTCTTGTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAAGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</gDNA_template>
            <first_frame> N  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  D  S  I  V  N  P  A  M  C  L  I  V  R  L  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  S  K  S  *  *  K  P  N  L  L  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  I  K  E  G  L  M  N  *  *  N  E  I  R  G  S  G  V  T  N  R  H  V  D  L  R  D  R  V  S  *  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H   </first_frame>
            <second_frame>  I  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  I  V  L  *  T  L  L  C  A  *  L  Y  V  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  C  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  *  K  K  A  *  *  I  D  R  M  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  I  D  T  *  I  *  G  I  G  C  H  E  P  T  H  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  I  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  </second_frame>
            <third_frame>   F  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  T  F  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  A  I  E  F  Q  I  L  I  K  T  *  S  L  V  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  Y  K  R  R  L  D  E  L  I  E  *  D  *  G  I  G  C  H  E  P  T  R  R  F  K  G  S  G  V  M  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  S  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  Y  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0049F08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46455" PGL_stop="45858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46455" e_stop="46018"/>
            <exon e_start="45900" e_stop="45858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="46455" e_stop="46018" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46017" i_stop="45901" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.884">
            <gDNA_exon_boundary e_start="45900" e_stop="45858" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46455" stop="46018"/>
              <exon start="45900" stop="45859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46211" stop="46018"/>
              <exon start="45900" stop="45858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTGACGAAGACTGGCTAGAATTACTGTTGAGTTGAGGACGACGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAAACACGGGTACTCAGTAGATATCATCGGCCAACTCAAAATAGAAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTTAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTATCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCG : GTTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCGTGA</gDNA_template>
            <first_frame> S  P  S  *  K  R  *  L  T  L  K  I  R  C  D  E  D  W  L  E  L  L  L  S  *  G  R  R  H  V  C  C  T  P  Q  I  T  K  K  K  T  *  K  *  G  V  S  T  K  H  G  Y  S  V  D  I  I  G  Q  L  K  I  E  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  *  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  Y  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  :  V  R  D  T  R  S  P  K  S  M  C  R  F  V  </first_frame>
            <second_frame>  V  Q  A  R  S  V  S  S  P  *  R  S  G  V  T  K  T  G  *  N  Y  C  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  R  R  K  H  K  S  R  G  S  V  Q  N  T  G  T  Q  *  I  S  S  A  N  S  K  *  K  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  S  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  I  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R :   F  V  T  P  D  P  L  N  L  C  V  G  S  * </second_frame>
            <third_frame>   S  K  L  E  A  L  A  H  P  E  D  P  V  *  R  R  L  A  R  I  T  V  E  L  R  T  T  A  R  L  L  H  S  T  N  N  K  E  E  N  I  K  V  G  G  Q  Y  K  T  R  V  L  S  R  Y  H  R  P  T  Q  N  R  K  T  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  A  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  L  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V   : G  S  *  H  P  I  P  *  I  Y  V  S  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0049F08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="67306" PGL_stop="64291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67306" e_stop="67277"/>
            <exon e_start="66776" e_stop="66656"/>
            <exon e_start="65929" e_stop="65726"/>
            <exon e_start="65092" e_stop="64783"/>
            <exon e_start="64315" e_stop="64291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.965" e_score="0.933"/>
          <exon-intron don_prob="0.980" acc_prob="0.986" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="67306" e_stop="67277" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.965">
            <gDNA_intron_boundary i_start="67276" i_stop="66777" i_length="500"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="66776" e_stop="66656" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66655" i_stop="65930" i_length="726"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="65929" e_stop="65726" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="65725" i_stop="65093" i_length="633"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="65092" e_stop="64783" e_length="310"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64782" i_stop="64316" i_length="467"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="64315" e_stop="64291" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67277"/>
              <exon start="66776" stop="66656"/>
              <exon start="65929" stop="65726"/>
              <exon start="65092" stop="64783"/>
              <exon start="64315" stop="64291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578053" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATCTCTGGGATTCCGTCAGTCACAGAG : ATCTGCATCAGTTGCCGCATCTGCGTCAGTGCGAAGTATTGCCGCAGATGATGAGAATGTGGAATCTCCTTCAAGTGATGAAGATGCCAAACAGGACACTACCGTTATTGACGAAAGCTCA : GATGATGATAAGACGGTTCAGGCCAAAGGACGCAAAAGGGCTGCTCCAAGGGGAAGGAGTAGAGGTTCAGCAACAGCGGCTAAAAGGGGAAGAAAACCAGATAGCTCCTCATCTTCACTTCAAAGGATGCTCATGGATGTTAATGAAGATGACGATGACGATGATGATGACATGACAAAGAAAGAGAATAAACCTCGACCTCGG : GCAACTAGGAATTATGGTGCTTTAAGGAGGTGACTGTACCATTTGTTTCATTCAGGGATGTTGATTATGATGACCAAATTTGCCTAGTGAGTTGTAAATACACTAGTAAGTTACAGAGTGTTTTCGGTTTCAACTCCAGTGTTTTATTTCGTATTTGTCAATGTTGATACGCGGAGAGTAGGTCTTTTTTTTTTTAGTATGCATTGATTATACCGATGGCTTCAATTTTGGCCATTCCATTTGCTTTAATGAACAATGACATGGTTATGTTTCTTGTGTGTGGTATATAGAAGTGGAAATGTTGCTACGA : ATCTATATCTAATTAGAAAAAAAAA</gDNA_template>
            <first_frame> C  I  S  G  I  P  S  V  T  E  :  I  C  I  S  C  R  I  C  V  S  A  K  Y  C  R  R  *  *  E  C  G  I  S  F  K  *  *  R  C  Q  T  G  H  Y  R  Y  *  R  K  L   : R  *  *  *  D  G  S  G  Q  R  T  Q  K  G  C  S  K  G  K  E  *  R  F  S  N  S  G  *  K  G  K  K  T  R  *  L  L  I  F  T  S  K  D  A  H  G  C  *  *  R  *  R  *  R  *  *  *  H  D  K  E  R  E  *  T  S  T  S   : G  N  *  E  L  W  C  F  K  E  V  T  V  P  F  V  S  F  R  D  V  D  Y  D  D  Q  I  C  L  V  S  C  K  Y  T  S  K  L  Q  S  V  F  G  F  N  S  S  V  L  F  R  I  C  Q  C  *  Y  A  E  S  R  S  F  F  F  *  Y  A  L  I  I  P  M  A  S  I  L  A  I  P  F  A  L  M  N  N  D  M  V  M  F  L  V  C  G  I  *  K  W  K  C  C  Y  E :   S  I  S  N  *  K  K  K </first_frame>
            <second_frame>  A  S  L  G  F  R  Q  S  Q  R :   S  A  S  V  A  A  S  A  S  V  R  S  I  A  A  D  D  E  N  V  E  S  P  S  S  D  E  D  A  K  Q  D  T  T  V  I  D  E  S  S  :  D  D  D  K  T  V  Q  A  K  G  R  K  R  A  A  P  R  G  R  S  R  G  S  A  T  A  A  K  R  G  R  K  P  D  S  S  S  S  S  L  Q  R  M  L  M  D  V  N  E  D  D  D  D  D  D  D  D  M  T  K  K  E  N  K  P  R  P  R  :  A  T  R  N  Y  G  A  L  R  R  *  L  Y  H  L  F  H  S  G  M  L  I  M  M  T  K  F  A  *  *  V  V  N  T  L  V  S  Y  R  V  F  S  V  S  T  P  V  F  Y  F  V  F  V  N  V  D  T  R  R  V  G  L  F  F  F  S  M  H  *  L  Y  R  W  L  Q  F  W  P  F  H  L  L  *  *  T  M  T  W  L  C  F  L  C  V  V  Y  R  S  G  N  V  A  T   : N  L  Y  L  I  R  K  K   </second_frame>
            <third_frame>   H  L  W  D  S  V  S  H  R   : D  L  H  Q  L  P  H  L  R  Q  C  E  V  L  P  Q  M  M  R  M  W  N  L  L  Q  V  M  K  M  P  N  R  T  L  P  L  L  T  K  A  Q :   M  M  I  R  R  F  R  P  K  D  A  K  G  L  L  Q  G  E  G  V  E  V  Q  Q  Q  R  L  K  G  E  E  N  Q  I  A  P  H  L  H  F  K  G  C  S  W  M  L  M  K  M  T  M  T  M  M  M  T  *  Q  R  K  R  I  N  L  D  L  G :   Q  L  G  I  M  V  L  *  G  G  D  C  T  I  C  F  I  Q  G  C  *  L  *  *  P  N  L  P  S  E  L  *  I  H  *  *  V  T  E  C  F  R  F  Q  L  Q  C  F  I  S  Y  L  S  M  L  I  R  G  E  *  V  F  F  F  L  V  C  I  D  Y  T  D  G  F  N  F  G  H  S  I  C  F  N  E  Q  *  H  G  Y  V  S  C  V  W  Y  I  E  V  E  M  L  L  R  :  I  Y  I  *  L  E  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67305" stop="67277"/>
                    <exon start="66776" stop="66656"/>
                    <exon start="65929" stop="65726"/>
                    <exon start="65092" stop="65060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASLGFRQSQRSASVAASASVRSIAADDENVESPSSDEDAKQDTTVIDESSDDDKTVQAKGRKRAAPRGRSRGSATAAKRGRKPDSSSSSLQRMLMDVNEDDDDDDDDMTKKENKPRPRATRNYGALRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67304" stop="67277"/>
                    <exon start="66776" stop="66656"/>
                    <exon start="65929" stop="65755"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLWDSVSHRDLHQLPHLRQCEVLPQMMRMWNLLQVMKMPNRTLPLLTKAQMMIRRFRPKDAKGLLQGEGVEVQQQRLKGEENQIAPHLHFKGCSWMLMKMTMTMMMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="81563" PGL_stop="92467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81563" e_stop="81760"/>
            <exon e_start="88369" e_stop="88450"/>
            <exon e_start="92448" e_stop="92467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.976"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="81563" e_stop="81760" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="81761" i_stop="88368" i_length="6608"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="88369" e_stop="88450" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88451" i_stop="92447" i_length="3997"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92448" e_stop="92467" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81563" stop="81760"/>
              <exon start="88369" stop="88450"/>
              <exon start="92448" stop="92467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAAAACTCCTTGTTTTTACATTCCAAAGCTTCGATCTTTCTCTCTCTGCATTGGACAAAGTTCTAGGGTTTCATCAACAGCTTCATAAATGGATAGCTTGTATTGAGCGGTGATCGCCGCTAGTTATTATCTCGGCGTTCGATTCCTCCTGCTGTGGAAGATCGCCATTGATTCATCATCATGTTCGAAGCACAT : GTTCTGCATTTGCTTCGAAGATATCTTGGTGAATATGTCCATGGATTGTCGGCGGAGGCTTTGAGAATCAGCGTATGGCAAG : GCGATGTGGTTCTCAAGGAC</gDNA_template>
            <first_frame> S  K  N  S  L  F  L  H  S  K  A  S  I  F  L  S  L  H  W  T  K  F  *  G  F  I  N  S  F  I  N  G  *  L  V  L  S  G  D  R  R  *  L  L  S  R  R  S  I  P  P  A  V  E  D  R  H  *  F  I  I  M  F  E  A  H  :  V  L  H  L  L  R  R  Y  L  G  E  Y  V  H  G  L  S  A  E  A  L  R  I  S  V  W  Q   : G  D  V  V  L  K  D </first_frame>
            <second_frame>  P  K  T  P  C  F  Y  I  P  K  L  R  S  F  S  L  C  I  G  Q  S  S  R  V  S  S  T  A  S  *  M  D  S  L  Y  *  A  V  I  A  A  S  Y  Y  L  G  V  R  F  L  L  L  W  K  I  A  I  D  S  S  S  C  S  K  H  M :   F  C  I  C  F  E  D  I  L  V  N  M  S  M  D  C  R  R  R  L  *  E  S  A  Y  G  K  :  A  M  W  F  S  R   </second_frame>
            <third_frame>   Q  K  L  L  V  F  T  F  Q  S  F  D  L  S  L  S  A  L  D  K  V  L  G  F  H  Q  Q  L  H  K  W  I  A  C  I  E  R  *  S  P  L  V  I  I  S  A  F  D  S  S  C  C  G  R  S  P  L  I  H  H  H  V  R  S  T   : C  S  A  F  A  S  K  I  S  W  *  I  C  P  W  I  V  G  G  G  F  E  N  Q  R  M  A  R :   R  C  G  S  Q  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0049F08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="111061" PGL_stop="113964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111061" e_stop="111218"/>
            <exon e_start="113390" e_stop="113482"/>
            <exon e_start="113646" e_stop="113964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111061" e_stop="111218" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="111219" i_stop="113389" i_length="2171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113390" e_stop="113482" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="0.985">
            <gDNA_intron_boundary i_start="113483" i_stop="113645" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113646" e_stop="113964" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111061" stop="111218"/>
              <exon start="113390" stop="113482"/>
              <exon start="113646" stop="113964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111062" stop="111218"/>
              <exon start="113390" stop="113482"/>
              <exon start="113646" stop="113957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAGGTTCTCTTGGGACCAAATTCAAGCCCTATGTCGTCTTCGTCGGCGTTATGTACAGCTATATTCTGATTCATTGCAACAGCTGCCGAACGTTAATAGATCAGAGATCAGAAACATTGAGAAAGATCTCGATCCTAAGGTTATTTTACTGTGGAG : GTTTCTTGCTCATGCAAAGGTTGAATCTTTGAAATCAAAGGAGGCAGCTGAACAAAGAATGCTTAGAAAGAGAAGCTGGTTTTCTTTTACATG : GAGTACAGATACTGCAGATGTGTCTGCGGGGGACACTTCTAAAGAAGCTAATACAATGGAGGACCAATTGACTCGGGAGGAGTGGCAAGCAATCAATAAATTACTTAGTTACCAGCCAGATGAGGAATTGGCACTGCAGCATGGGAAGGAAAATGTGATCCACTACTTGTTAAATGTTTCTATCAGTAGGGCAGCTGCAAGGATAATTGATATAGATCAGATAGAGATCGTTGGCGGTAGATTTGAAAATCTTTATGTGTCAACGAAGCTCAAGAATCGAAACTCCCATTGCGATCTGACACTGAAATTTTACGGATTG</gDNA_template>
            <first_frame> Y  R  F  S  W  D  Q  I  Q  A  L  C  R  L  R  R  R  Y  V  Q  L  Y  S  D  S  L  Q  Q  L  P  N  V  N  R  S  E  I  R  N  I  E  K  D  L  D  P  K  V  I  L  L  W  R :   F  L  A  H  A  K  V  E  S  L  K  S  K  E  A  A  E  Q  R  M  L  R  K  R  S  W  F  S  F  T  W :   S  T  D  T  A  D  V  S  A  G  D  T  S  K  E  A  N  T  M  E  D  Q  L  T  R  E  E  W  Q  A  I  N  K  L  L  S  Y  Q  P  D  E  E  L  A  L  Q  H  G  K  E  N  V  I  H  Y  L  L  N  V  S  I  S  R  A  A  A  R  I  I  D  I  D  Q  I  E  I  V  G  G  R  F  E  N  L  Y  V  S  T  K  L  K  N  R  N  S  H  C  D  L  T  L  K  F  Y  G  L </first_frame>
            <second_frame>  I  G  S  L  G  T  K  F  K  P  Y  V  V  F  V  G  V  M  Y  S  Y  I  L  I  H  C  N  S  C  R  T  L  I  D  Q  R  S  E  T  L  R  K  I  S  I  L  R  L  F  Y  C  G   : G  F  L  L  M  Q  R  L  N  L  *  N  Q  R  R  Q  L  N  K  E  C  L  E  R  E  A  G  F  L  L  H   : G  V  Q  I  L  Q  M  C  L  R  G  T  L  L  K  K  L  I  Q  W  R  T  N  *  L  G  R  S  G  K  Q  S  I  N  Y  L  V  T  S  Q  M  R  N  W  H  C  S  M  G  R  K  M  *  S  T  T  C  *  M  F  L  S  V  G  Q  L  Q  G  *  L  I  *  I  R  *  R  S  L  A  V  D  L  K  I  F  M  C  Q  R  S  S  R  I  E  T  P  I  A  I  *  H  *  N  F  T  D   </second_frame>
            <third_frame>   *  V  L  L  G  P  N  S  S  P  M  S  S  S  S  A  L  C  T  A  I  F  *  F  I  A  T  A  A  E  R  *  *  I  R  D  Q  K  H  *  E  R  S  R  S  *  G  Y  F  T  V  E  :  V  S  C  S  C  K  G  *  I  F  E  I  K  G  G  S  *  T  K  N  A  *  K  E  K  L  V  F  F  Y  M  :  E  Y  R  Y  C  R  C  V  C  G  G  H  F  *  R  S  *  Y  N  G  G  P  I  D  S  G  G  V  A  S  N  Q  *  I  T  *  L  P  A  R  *  G  I  G  T  A  A  W  E  G  K  C  D  P  L  L  V  K  C  F  Y  Q  *  G  S  C  K  D  N  *  Y  R  S  D  R  D  R  W  R  *  I  *  K  S  L  C  V  N  E  A  Q  E  S  K  L  P  L  R  S  D  T  E  I  L  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111061" stop="111218"/>
                    <exon start="113390" stop="113482"/>
                    <exon start="113646" stop="113964"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFSWDQIQALCRLRRRYVQLYSDSLQQLPNVNRSEIRNIEKDLDPKVILLWRFLAHAKVESLKSKEAAEQRMLRKRSWFSFTWSTDTADVSAGDTSKEANTMEDQLTREEWQAINKLLSYQPDEELALQHGKENVIHYLLNVSISRAAARIIDIDQIEIVGGRFENLYVSTKLKNRNSHCDLTLKFYGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="123810" PGL_stop="124482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123810" e_stop="124482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="123810" e_stop="124482" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123810" stop="124482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAAGCAAGTACATGAAATTCCTCCTGCAAACATCGGAGGTACCTTTTCCTGTATCAGCATCAGTTCCAGAGGCATGGATCTGCAGAAGGTATGCTAGTCTCCTCACTGAAAACCTTCCCCAACACATAGATGAGCATGATGCACAGACTTGCAAAAATGCAGTATAGGAGGAAGATAGGTCATGGAAAGCGAGAGATATCGAGAATCAAGAGAAAATGTGGAGGCAAAAAGTGTGTAGCAATTAGTTGATAAAAGCAGATAGAGAAAGACAACACGTAAGCTATTGCTCCATGGGAGTTTTCAGAGAAAGGAACATCTTAATATTAAACAGTCAAGTAATTTTGAAAAGAGATCTTGTGTGATGAAAACCATATTTGAAGAAAATCCTATAATTCAATGGTAATTAGCACAATGCAATTTGGAACTGGAATCACCCATCAAAGAAAAATACCTTACCTCTTGAACTAGCATTTTAGGGGTTGGGTTACGCCCAAGGTCCATTTCTGTAATAGGTTCTTTCCGATGAAATCTTTCCTTGATTGTAACCAAACCTTTGTGCTCTAGCTATGTGCTTACATACTAGATGTGGCTAAATTAATCCTTAAACCCTTATTGTTCCTGCATGTACAGGATGAATAATGCTCTTCATTTATTTTAATTCATTGTAAATA</gDNA_template>
            <first_frame> G  K  Q  V  H  E  I  P  P  A  N  I  G  G  T  F  S  C  I  S  I  S  S  R  G  M  D  L  Q  K  V  C  *  S  P  H  *  K  P  S  P  T  H  R  *  A  *  C  T  D  L  Q  K  C  S  I  G  G  R  *  V  M  E  S  E  R  Y  R  E  S  R  E  N  V  E  A  K  S  V  *  Q  L  V  D  K  S  R  *  R  K  T  T  R  K  L  L  L  H  G  S  F  Q  R  K  E  H  L  N  I  K  Q  S  S  N  F  E  K  R  S  C  V  M  K  T  I  F  E  E  N  P  I  I  Q  W  *  L  A  Q  C  N  L  E  L  E  S  P  I  K  E  K  Y  L  T  S  *  T  S  I  L  G  V  G  L  R  P  R  S  I  S  V  I  G  S  F  R  *  N  L  S  L  I  V  T  K  P  L  C  S  S  Y  V  L  T  Y  *  M  W  L  N  *  S  L  N  P  Y  C  S  C  M  Y  R  M  N  N  A  L  H  L  F  *  F  I  V  N  </first_frame>
            <second_frame>  V  S  K  Y  M  K  F  L  L  Q  T  S  E  V  P  F  P  V  S  A  S  V  P  E  A  W  I  C  R  R  Y  A  S  L  L  T  E  N  L  P  Q  H  I  D  E  H  D  A  Q  T  C  K  N  A  V  *  E  E  D  R  S  W  K  A  R  D  I  E  N  Q  E  K  M  W  R  Q  K  V  C  S  N  *  L  I  K  A  D  R  E  R  Q  H  V  S  Y  C  S  M  G  V  F  R  E  R  N  I  L  I  L  N  S  Q  V  I  L  K  R  D  L  V  *  *  K  P  Y  L  K  K  I  L  *  F  N  G  N  *  H  N  A  I  W  N  W  N  H  P  S  K  K  N  T  L  P  L  E  L  A  F  *  G  L  G  Y  A  Q  G  P  F  L  *  *  V  L  S  D  E  I  F  P  *  L  *  P  N  L  C  A  L  A  M  C  L  H  T  R  C  G  *  I  N  P  *  T  L  I  V  P  A  C  T  G  *  I  M  L  F  I  Y  F  N  S  L  *  I </second_frame>
            <third_frame>   *  A  S  T  *  N  S  S  C  K  H  R  R  Y  L  F  L  Y  Q  H  Q  F  Q  R  H  G  S  A  E  G  M  L  V  S  S  L  K  T  F  P  N  T  *  M  S  M  M  H  R  L  A  K  M  Q  Y  R  R  K  I  G  H  G  K  R  E  I  S  R  I  K  R  K  C  G  G  K  K  C  V  A  I  S  *  *  K  Q  I  E  K  D  N  T  *  A  I  A  P  W  E  F  S  E  K  G  T  S  *  Y  *  T  V  K  *  F  *  K  E  I  L  C  D  E  N  H  I  *  R  K  S  Y  N  S  M  V  I  S  T  M  Q  F  G  T  G  I  T  H  Q  R  K  I  P  Y  L  L  N  *  H  F  R  G  W  V  T  P  K  V  H  F  C  N  R  F  F  P  M  K  S  F  L  D  C  N  Q  T  F  V  L  *  L  C  A  Y  I  L  D  V  A  K  L  I  L  K  P  L  L  F  L  H  V  Q  D  E  *  C  S  S  F  I  L  I  H  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0049F08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="149384" PGL_stop="150917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="149384" e_stop="149495"/>
            <exon e_start="149569" e_stop="149655"/>
            <exon e_start="150474" e_stop="150626"/>
            <exon e_start="150734" e_stop="150917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.413" acc_prob="0.923" e_score="0.955"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="0.977"/>
          <exon-intron don_prob="0.965" acc_prob="0.994" e_score="0.974"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="149384" e_stop="149495" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.413" acc_prob="0.923">
            <gDNA_intron_boundary i_start="149496" i_stop="149568" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="149569" e_stop="149655" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="149656" i_stop="150473" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="150474" e_stop="150626" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.994">
            <gDNA_intron_boundary i_start="150627" i_stop="150733" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="0.957">
            <gDNA_exon_boundary e_start="150734" e_stop="150917" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149384" stop="149495"/>
              <exon start="149569" stop="149655"/>
              <exon start="150474" stop="150626"/>
              <exon start="150734" stop="150917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCATCGCGTAATGATGCCTATCTTTCGTCCCGGGTGGGCATCGCTGTTGCTCTACAAAATTCTGAGAACTTTAGTTCCGGGATATCTCTTCTTGAGCTGGAAAAGAAG : CAACGTGTTGATGTCAAGGCCTTTGGTGTGGATGGATTTTATTACAAGCTTTCGGTGGTGCTGCGCATGACTTCAGACAGAACAAAG : GTTGTGCATTTTCAACCACATAGCTTATTCATCAATAGAGTTGGATGTAGTGTGTGCTTGTGTCAGTGTGATTCTCAGTCAGTGGAGTGGATCCATCCTACAGATCCTCCAAAACATTTTTCATGGCAGTCTAATAAAGTGGAACTTTTAAAG : TTGCGGCTTGATGGATATGATTGGAGCTCACCATTTAGTATTGATAATGAAGGTGTTATGTGTATTTGCTTGAAAAATCAGACCTCTCATAACCCAATGCATCTCAAGGTTGAAGTTAGAAGCGGAACAAAAAGTTCCCGCTATGAAATTATACTTCGCCCCAATTCCTTCACCAGTCCTTACA</gDNA_template>
            <first_frame> V  F  I  A  *  *  C  L  S  F  V  P  G  G  H  R  C  C  S  T  K  F  *  E  L  *  F  R  D  I  S  S  *  A  G  K  E   : A  T  C  *  C  Q  G  L  W  C  G  W  I  L  L  Q  A  F  G  G  A  A  H  D  F  R  Q  N  K   : G  C  A  F  S  T  T  *  L  I  H  Q  *  S  W  M  *  C  V  L  V  S  V  *  F  S  V  S  G  V  D  P  S  Y  R  S  S  K  T  F  F  M  A  V  *  *  S  G  T  F  K   : V  A  A  *  W  I  *  L  E  L  T  I  *  Y  *  *  *  R  C  Y  V  Y  L  L  E  K  S  D  L  S  *  P  N  A  S  Q  G  *  S  *  K  R  N  K  K  F  P  L  *  N  Y  T  S  P  Q  F  L  H  Q  S  L   </first_frame>
            <second_frame>  F  S  S  R  N  D  A  Y  L  S  S  R  V  G  I  A  V  A  L  Q  N  S  E  N  F  S  S  G  I  S  L  L  E  L  E  K  K  :  Q  R  V  D  V  K  A  F  G  V  D  G  F  Y  Y  K  L  S  V  V  L  R  M  T  S  D  R  T  K  :  V  V  H  F  Q  P  H  S  L  F  I  N  R  V  G  C  S  V  C  L  C  Q  C  D  S  Q  S  V  E  W  I  H  P  T  D  P  P  K  H  F  S  W  Q  S  N  K  V  E  L  L  K  :  L  R  L  D  G  Y  D  W  S  S  P  F  S  I  D  N  E  G  V  M  C  I  C  L  K  N  Q  T  S  H  N  P  M  H  L  K  V  E  V  R  S  G  T  K  S  S  R  Y  E  I  I  L  R  P  N  S  F  T  S  P  Y  </second_frame>
            <third_frame>   F  H  R  V  M  M  P  I  F  R  P  G  W  A  S  L  L  L  Y  K  I  L  R  T  L  V  P  G  Y  L  F  L  S  W  K  R  S :   N  V  L  M  S  R  P  L  V  W  M  D  F  I  T  S  F  R  W  C  C  A  *  L  Q  T  E  Q  R :   L  C  I  F  N  H  I  A  Y  S  S  I  E  L  D  V  V  C  A  C  V  S  V  I  L  S  Q  W  S  G  S  I  L  Q  I  L  Q  N  I  F  H  G  S  L  I  K  W  N  F  *  S :   C  G  L  M  D  M  I  G  A  H  H  L  V  L  I  M  K  V  L  C  V  F  A  *  K  I  R  P  L  I  T  Q  C  I  S  R  L  K  L  E  A  E  Q  K  V  P  A  M  K  L  Y  F  A  P  I  P  S  P  V  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0049F08.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149385" stop="149495"/>
                    <exon start="149569" stop="149655"/>
                    <exon start="150474" stop="150626"/>
                    <exon start="150734" stop="150916"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSRNDAYLSSRVGIAVALQNSENFSSGISLLELEKKQRVDVKAFGVDGFYYKLSVVLRMTSDRTKVVHFQPHSLFINRVGCSVCLCQCDSQSVEWIHPTDPPKHFSWQSNKVELLKLRLDGYDWSSPFSIDNEGVMCICLKNQTSHNPMHLKVEVRSGTKSSRYEIILRPNSFTSPY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 340 chains have been computed
$ 
$ memory statistics:
$ 434576 bytes spliced alignments in total
$ 136 spliced alignments have been stored
$ 3195 bytes was the average size of a spliced alignment
$ 22792 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1753 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 410 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:18:57
-->
