<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:15:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313719" ref_strand="-" ref_description="SGN-E313719 [cTOA-17-A16]">
      <seq>tatatatgcaggatagcaaatgccatcnctgtattctcagctttaggcttcatggttaatttggactccataatggagacagttaccttgagcttatctttaaaccttggtgtacatgagatgcttgaagcagaattccatgttcgagttgctgagcaagaagctgaacgacggagcacatcaaaaaggaggagatagtttacaactcatcatctacatttgcctttcttggattgtcgattatgcaaaagatagaagagattaggaatctattaagctgaatcgggtagcggtatgtcaccctttaattgaaaaagatctgtaaaagagtttccttctgaatatccccttaaattcacacttttgatttatgtgcattagtaaggagtgtgcagctgaagatcaaagtttttcttcccagcaatgaaaatttttcttatgttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="1786" stop="55182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2086" g_stop="2531" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2532" i_stop="3450" i_length="919">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3451" g_stop="3493" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="489" r_length="43" r_score="0.581"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E313719" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313719" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2086" e_stop="2531"/>
          <exon e_start="3451" e_stop="3493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCACTTGTCTGTATTGCTGGTCTTTTTACTTGTTAGTGTCTAATGTTTTTTAGCTTGGAAAGTGAAAGCAATATTCCAAGTGTTATTTTTGGCTAGTCTCGTGTACATTTTTTTCTCAATTTTTGGATGGATCTCAGTAATTTGGTAAGCATTTTGAATCAAAAAAATTCAAATTGGCCACTGTAATTTAAAGCAAAACGAACAAGTTGACCAAACCTGAAGGATTTGCCCTATCATATATATATTATTGGAGTTTTTTTTTTTGAATTATTATTTCAAAAAATTTCAAGGTAAATTGAGGTGCTTTATATTATTCACATACTCCATAAAGGTATAATGTAAGGAGTTGTAACTTGCAAGCCTCCTGAAGTTTACAGAGGCAAAGGTGTATAATGTACATTGGTGAAGTGGTTAAAAAGAAATAGGGAAATAAATCAGTGACAAACTTGGTTCATGGTTCTTTCTTAGGGTTTGTTTGGTATGAATGAAAATATTTTACGATTTGGACAAAAGTTTTGAATGACCTCCCTTCAAAAGTTAAGAAATTTTTTTTTTTCCTCATATCATTGAAGAATTTTTTTTTTTGTTTTGAATGACCTCCCTTCAAAAGTTAAGAAATTTTTTTTCCCCTCATATCATTGAAGAATTTTTTTTCCCTCATATCAAACACACTGTTAGGCTTTATTCTTTCTTTGATCATAGAAATGTCCTTAGAGCATCGTCTACTCAATAAAATTAGCAGCCTAAAGTCACTTTTTTTTTAAAAAAGACCTTCAAATTTTTCAATAAAATTTATTTATATATATATATATATATATACACACACAAAAAGATAAGTGTTGTCTTTTTCTTTATTCTTTTATTTGAGAAAACAAATTGCTCATATTTTGATAAAACAAAGTTGTGTTTGGACATGTATAGAGAAAAAATATTAGACAAATTGATAATCTCAAAACTC-ATCTTG</genome_strand>
        <mrna_strand>TATATATGCAGGATAGCAAATGCCATCNCTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGGTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739389" ref_strand="+" ref_description="SGN-E739389 [LC17BA06]">
      <seq>ctttggtcagtcatgttatatgaaaagcaatccactattctttagtttcgttagcgtgatagtgaaaaatttattttcaggtgcttttatggatgccattagtggaatggaatttgactttgttgcttcgggacattatgcaaagattgtccatgcatctactgagcagctggacgaaccttctgtcttggaattgtcaaaagatatggtgtgtttttatattcgtacatgtttcttagagcctcttaccctattttcttttgtaaaagtttgatatgttcacttgagaaggggatatcttgaagatgagagtggtgtggaagagtcttgcttcactgtaggtaaaatgaagaacatatgggaaatgacttacagatatacatggttgggaattaaacattatagtcccatcaaaagaagttcttttgtaagagacagacatttagcagttgaggatacaaagtttgatttaacaccttcccaacccacctagcccccgttgcttttaaccaagatatcttctttgaacttatgatcaacgtctttcacgactgtctgtataattctttcaggtaaatttggtatatgtttcttgagatatattacatttggttcttatcttgaaaaatatagtaaatgtgatgaagcgtcttaagatatatctcataatgaaattgtaatgtagatctcgaaattatgattaaaaacagataaataaaacaaccaaagcaaatatattattctgttgaaggttcatatgtagtatcaatactgctccaagaatgatggttaactaggagttcatcatcttttgatacagaagaaatagtttaatttgccacacttcaattcctgatttactgagagttttacatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="8317" stop="6840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8018" g_stop="7140" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="879" r_length="879" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E739389" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8018" e_stop="7140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</genome_strand>
        <mrna_strand>CTTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598344" ref_strand="+" ref_description="SGN-E598344 [74015]">
      <seq>aagattgaatataaattaagcccccaaggcctagctcaagtggcaaaaggtggaggatttgtggcttaggtcacaggttcaagccccacaccatgcaaagtgaagcccggtatttaagtggagaagggtagaggggcgggcccattatccaccgagtttagaaggctgtgattggtccaaagggtgggtcaaaaacgaatttctcggttatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="33577" stop="32763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33261" g_stop="33062" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="222" r_length="200" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E598344" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33261" e_stop="33062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGGCTTAGGTCGCAGGTTCAAGCCCCACACCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAACGGTAGAGGGGTGGGCCCATCGTCAACCGAGTTTAGAAGGCTGTAGTTGGTCCAAAGGGCAGGTCACAGATAGCTTTCTCGGTTATCAAAAAAGAAC</genome_strand>
        <mrna_strand>CCCAAGGCCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGGCTTAGGTCACAGGTTCAAGCCCCACACCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGGTGGGTCAAAAACGAATTTCTCGGTTATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593348" ref_strand="+" ref_description="SGN-E593348 [36576]">
      <seq>ctaagaacataaagcccccaaggcctagctcaagtggcaaaaggtggaggatttgtggcttaggtcgtaggttcaagccccacaccatgcaaagcgaagcccggtatttaagcggagaagggtagaggggcgggcccattatccaccgagtttagaaggctgtgattggtccaaagggcgggtcacagacggatttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="33564" stop="32778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33261" g_stop="33078" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="200" r_length="184" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E593348" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33261" e_stop="33078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGGCTTAGGTCGCAGGTTCAAGCCCCACACCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAACGGTAGAGGGGTGGGCCCATCGTCAACCGAGTTTAGAAGGCTGTAGTTGGTCCAAAGGGCAGGTCACAGATAGCTTTCTCG</genome_strand>
        <mrna_strand>CCCAAGGCCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGGCTTAGGTCGTAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCGGTATTTAAGCGGAGAAGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGGCGGGTCACAGACGGATTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334846" ref_strand="+" ref_description="SGN-E334846 [cTOE-3-I16]">
      <seq>gaggggtgtttctcaagtacaatccattgggaatcaagctgtaaacaatattgtgagctttctaaacattccaccagatgactctgattctaatgagacttcaactgctggagatggaatatcttatgagagagagggtgagaatacctctgtacacctcatctggaccgttctacttctttgcaatctgataggagtagaacgtctgaagcagcaagtttgcaaattgggagaatattctaccacatctggttccagatgcgttcaaataatgatgttgtgtgctattgtggctttcttctcgtctttctttggaactttagtttgctttctatgctgtacctggcagctctctttctgtatgcgctttgtgtgaacactgggccaagttacattttctgggttattatgctaatctacacagaaatatacattttgatccagtatatttatcaaataattattcagcacttgtggttttagcattcagtccactactcttcaagagctgggttttcctaccaaaaggataacatcatcttttgtcattagttcactgcccactatttctggtgtaccttgtttaccctcatacagagcactataacggcaaaagaatggtgaatggttttctctaggatacagtacttgnaaaagtagacttttggacccaaaggaggacatagtggcatctgggtggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="43877" stop="45170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44172" g_stop="44870" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E334846" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44172" e_stop="44870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGGTGTTTCTCAAGTACAATCCATTGGGAATCAAGCTGTAAACAATATTGTGAGCTTTCTAAACATTCCACCAGATGACTCTGATTCTAATGAGACTTCAACTGCTGGAGATGGAATATCTTATGAGAGAGAGGGTGAGAATA-CTCTGTACA-CTCATCTGGACCGTTCTACTTCTTTGCAATCTGATAGGAGTAGAACGTCTGAAGCAGCAAGTTTGCAAATTGGGAGAATATTCTACCACATCTGGTTCCAGATGCGTTCAAATAATGATGTTGTGTGCTATTGTGGCTTTCTTCTCGTCTTTCTTTGGAACTTTAGTTTGCTTTCTATGCTGTACCTGGCAGCTCTCTTTCTGTATGCGCTTTGTGTGAACACTGGGCCAAGTTACATTTTCTGGGTTATTATGCTAATCTACACAGAAATATACATTTTGATCCAGTATATTTATCAAATAATTATTCAGCAC-TGTGGTTTTAGCATTCAGTCCACTACTCTTCAAGAGCTGGGTTTTCCTACCAAAAGGATAACATCATCTTTTGTCATTAGTTCACTG-CCACTATTTCTGGTGTA-CTTGTTTACCCTCATACAGAGCACTATAACGGCAAAAG-ATGGTGAATGGTTTTCTCTAGGATACAGTACTTGGAAAAGTAGACTTTTGGACCCAAAGGAGGACATAGTGGCATCTGGGTGGATTG</genome_strand>
        <mrna_strand>GAG-GGGTGTTTCTCAAGTACAATCCATTGGGAATCAAGCTGTAAACAATATTGTGAGCTTTCTAAACATTCCACCAGATGACTCTGATTCTAATGAGACTTCAACTGCTGGAGATGGAATATCTTATGAGAGAGAGGGTGAGAATACCTCTGTACACCTCATCTGGACCGTTCTACTTCTTTGCAATCTGATAGGAGTAGAACGTCTGAAGCAGCAAGTTTGCAAATTGGGAGAATATTCTACCACATCTGGTTCCAGATGCGTTCAAATAATGATGTTGTGTGCTATTGTGGCTTTCTTCTCGTCTTTCTTTGGAACTTTAGTTTGCTTTCTATGCTGTACCTGGCAGCTCTCTTTCTGTATGCGCTTTGTGTGAACACTGGGCCAAGTTACATTTTCTGGGTTATTATGCTAATCTACACAGAAATATACATTTTGATCCAGTATATTTATCAAATAATTATTCAGCACTTGTGGTTTTAGCATTCAGTCCACTACTCTTCAAGAGCTGGGTTTTCCTACCAAAAGGATAACATCATCTTTTGTCATTAGTTCACTGCCCACTATTTCTGGTGTACCTTGTTTACCCTCATACAGAGCACTATAACGGCAAAAGAATGGTGAATGGTTTTCTCTAGGATACAGTACTTGNAAAAGTAGACTTTTGGACCCAAAGGAGGACATAGTGGCATCTGGGTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407815" ref_strand="+" ref_description="SGN-E407815 [PPI-8-L1]">
      <seq>gtttttgaggtggtttatgcctgcccattgacagaatgtccacctgaacagttcaaatcactcactccagctgctgacatagcaaacgagatccgtggagcacaaaccaaaggtgctgttgaagaagttggatttccataccctatactctccatcataggcgggggtagaagggaagttgatctttatgcttatatctttggtgctgatctgagtgtgttcttcttggttgctatgttctaccaatctgttaaaaaaaacaaaagcgagttcttggatgtttcccaacttgaggatcagtttcccaaggattatgtatttatattgatggcaatattcttcttgattgtgcttgaccgcatcatatacctctgttcattcgccacaggaaaagtgatctattacatttcaaatcttgttctttttacatatgtcgtcacagagtatgcttggaatatagatgcacagcaaagtgctgctggattatccctccgtgcaatatatctgacaaaagcaatatctctggcactgcaagccatacaaatccgctatggtgttcctcacaagagcacattgtatcgccaattcctcaccagcaaagnttctcaaatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="44885" stop="46459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45185" g_stop="45514" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45515" i_stop="45874" i_length="360">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45875" g_stop="46159" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="615" r_length="285" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E407815" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45185" e_stop="45514"/>
          <exon e_start="45875" e_stop="46159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAGGTGGTTTATGCCTGCCCATTGACAGAATGTCCACCTGAACAGTTCAAATCACTCACTCCAGCTGCTGACATAGCAAACGAGATCCGTGGAGCACAAACCAAAGGTGTTGTTGAAGAAGTTGGATTTCCATACCCTATACTCTCCATCATAGGCGGGGGTAGAAGGGAAGTTGATCTTTATGCTTATATCTTTGGTGCTGATCTGAGTGTGTTCTTCTTGGTTGCTATTTTCTACCAATCTGTTAAAAAAAACAAAAGCGAGTTCTTGGATGTTTCCCAACTTGAGGATCAGTTTCCCAAGGACTATGTATTTATATTGATGGTAAGCATGTTTTACTTTTGTCTATTTCATGCTTTCAGAATTTTTTTTATCAAAGATATTGATCACTGTTGTGGGGTAAACCAGACATGAACAACCTTGTTTTGACTCTACTGGTCAAATCTCCAGTACTTACCAACTAGAATGTAGATCACCTATCCTCTATTTTTCTTGCATATTGACATGCTTACATTTTATTCATACGTCCACGGAATTGCAATTTATAGGAATATGCCTAGTGATTCTTCTCTCCGTTTCAATTTGTGTTATACTGTGCAGAAAGCTCCTATAACCCGGCTGAAATAATAATACCTGCAGTATGATAATATGTCGCCTCTGACTTTCTTCTACGATCTTCTGCAGGCAATATTCTTCTTGATTGTGCTTGACCGCATCATATACCTCTGTTCATTTGCCACAGGAAAAGTGATCTATTACATTTCAAATCTTGTTCTTTTTACATATGTTGTCACGGAGTATGCTTGGAATATAGATGCACAGCAAAGTGCTGCTGGATTAGCCCTCCGTGCAATATATCTGACAAAAGCAGTATCTCTGGCACTGCAAGCCATACAAATCCGCTATGGTGTTCCTCACAAGAGCACATTGTATCGCCAATTCCTCACCAGCAAAGTTGCTCAAATCAAT</genome_strand>
        <mrna_strand>GTTTTTGAGGTGGTTTATGCCTGCCCATTGACAGAATGTCCACCTGAACAGTTCAAATCACTCACTCCAGCTGCTGACATAGCAAACGAGATCCGTGGAGCACAAACCAAAGGTGCTGTTGAAGAAGTTGGATTTCCATACCCTATACTCTCCATCATAGGCGGGGGTAGAAGGGAAGTTGATCTTTATGCTTATATCTTTGGTGCTGATCTGAGTGTGTTCTTCTTGGTTGCTATGTTCTACCAATCTGTTAAAAAAAACAAAAGCGAGTTCTTGGATGTTTCCCAACTTGAGGATCAGTTTCCCAAGGATTATGTATTTATATTGATG........................................................................................................................................................................................................................................................................................................................................................................GCAATATTCTTCTTGATTGTGCTTGACCGCATCATATACCTCTGTTCATTCGCCACAGGAAAAGTGATCTATTACATTTCAAATCTTGTTCTTTTTACATATGTCGTCACAGAGTATGCTTGGAATATAGATGCACAGCAAAGTGCTGCTGGATTATCCCTCCGTGCAATATATCTGACAAAAGCAATATCTCTGGCACTGCAAGCCATACAAATCCGCTATGGTGTTCCTCACAAGAGCACATTGTATCGCCAATTCCTCACCAGCAAAGNTTCTCAAATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421412" ref_strand="+" ref_description="SGN-E421412 [STM-32-H14]">
      <seq>gtttttgaggtggtttatgcctgcccattgacagaatgtccacctgaacagttcaaatcactcactccagctgctgacatagcaaacgagatccgtggagcacaaaccaaaggtgctgttgaagaagttggatttccataccctatactctccatcataggcgggggtagaagggaagttgatctttatgcttatatctttggtgctgatctgagtgtgttcttcttggttgctatgttctaccaatctgttaaaaaaaacaaaagcgagttcttggatgtttcccaacttgaggatcagtttcccaaggattatgtatttatattgatggcaatattcttcttgattgtgcttgaccgcatcatatacctctgttcattcgccacaggaaaagtgatctattacatttcaaatcttgttctttttacatatgtcgtcacagagtatgcttggaatatagatgcacagcaaagtgctgctggattatccctccgtgcaatatatctgacaaaagcaatatctctggcactgcaagccatacaaatccgctatggtgttcctcacaagagcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="44885" stop="46419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45185" g_stop="45514" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45515" i_stop="45874" i_length="360">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45875" g_stop="46119" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="575" r_length="245" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E421412" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45185" e_stop="45514"/>
          <exon e_start="45875" e_stop="46119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAGGTGGTTTATGCCTGCCCATTGACAGAATGTCCACCTGAACAGTTCAAATCACTCACTCCAGCTGCTGACATAGCAAACGAGATCCGTGGAGCACAAACCAAAGGTGTTGTTGAAGAAGTTGGATTTCCATACCCTATACTCTCCATCATAGGCGGGGGTAGAAGGGAAGTTGATCTTTATGCTTATATCTTTGGTGCTGATCTGAGTGTGTTCTTCTTGGTTGCTATTTTCTACCAATCTGTTAAAAAAAACAAAAGCGAGTTCTTGGATGTTTCCCAACTTGAGGATCAGTTTCCCAAGGACTATGTATTTATATTGATGGTAAGCATGTTTTACTTTTGTCTATTTCATGCTTTCAGAATTTTTTTTATCAAAGATATTGATCACTGTTGTGGGGTAAACCAGACATGAACAACCTTGTTTTGACTCTACTGGTCAAATCTCCAGTACTTACCAACTAGAATGTAGATCACCTATCCTCTATTTTTCTTGCATATTGACATGCTTACATTTTATTCATACGTCCACGGAATTGCAATTTATAGGAATATGCCTAGTGATTCTTCTCTCCGTTTCAATTTGTGTTATACTGTGCAGAAAGCTCCTATAACCCGGCTGAAATAATAATACCTGCAGTATGATAATATGTCGCCTCTGACTTTCTTCTACGATCTTCTGCAGGCAATATTCTTCTTGATTGTGCTTGACCGCATCATATACCTCTGTTCATTTGCCACAGGAAAAGTGATCTATTACATTTCAAATCTTGTTCTTTTTACATATGTTGTCACGGAGTATGCTTGGAATATAGATGCACAGCAAAGTGCTGCTGGATTAGCCCTCCGTGCAATATATCTGACAAAAGCAGTATCTCTGGCACTGCAAGCCATACAAATCCGCTATGGTGTTCCTCACAAGAGCACATT</genome_strand>
        <mrna_strand>GTTTTTGAGGTGGTTTATGCCTGCCCATTGACAGAATGTCCACCTGAACAGTTCAAATCACTCACTCCAGCTGCTGACATAGCAAACGAGATCCGTGGAGCACAAACCAAAGGTGCTGTTGAAGAAGTTGGATTTCCATACCCTATACTCTCCATCATAGGCGGGGGTAGAAGGGAAGTTGATCTTTATGCTTATATCTTTGGTGCTGATCTGAGTGTGTTCTTCTTGGTTGCTATGTTCTACCAATCTGTTAAAAAAAACAAAAGCGAGTTCTTGGATGTTTCCCAACTTGAGGATCAGTTTCCCAAGGATTATGTATTTATATTGATG........................................................................................................................................................................................................................................................................................................................................................................GCAATATTCTTCTTGATTGTGCTTGACCGCATCATATACCTCTGTTCATTCGCCACAGGAAAAGTGATCTATTACATTTCAAATCTTGTTCTTTTTACATATGTCGTCACAGAGTATGCTTGGAATATAGATGCACAGCAAAGTGCTGCTGGATTATCCCTCCGTGCAATATATCTGACAAAAGCAATATCTCTGGCACTGCAAGCCATACAAATCCGCTATGGTGTTCCTCACAAGAGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476573" ref_strand="+" ref_description="SGN-E476573 [cSTB-45-G4]">
      <seq>tatccaacttatgtgctgtcaacctgatgcaaatactctgtggctggttccggatgtggttcagagaagattcattctgtctctgaaagatatggaagttaaattttcttgggttcttacaagggacaggcccaaggacaaagaggttgtgaaatacgaaagaactcttgatcctgtggattgtccaaagccttgggaagttaagaaagttttgaatggttccaccaatagcttccgtgcatataatatatatcctagatatattcgcgtgactggttctggggaagttatgactattgaagaggaggcaaatggtgttagcgcggatatcattttaaatcggggagtctccgagtggtggtccttccatgatatcaactcactggatgtaaaaggctgtggagggttgagagggcctatggccataattgtatcagaggaaacaccgcagggcttgctgggtgagactctcanaacattcagtatatggggtctctacatcacatttgttttagcagttggtcgcttcatcagactgcagtgctccgacctacgaatgagaatcccatatgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="48067" stop="49538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48367" g_stop="48673" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48674" i_stop="48887" i_length="214">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48888" g_stop="49029" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="449" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49030" i_stop="49110" i_length="81">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49111" g_stop="49238" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="577" r_length="128" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E476573" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48367" e_stop="48673"/>
          <exon e_start="48888" e_stop="49029"/>
          <exon e_start="49111" e_stop="49238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCAACTTATCTGCTGTCAACCTGATGCAAATACTCTGTGGCTGGTTCCGGATGTGGTTCAGAGAAGATTCATTCTGTCTCTGAAAGATATGGAAGTTAAATTTTCTTGGGTTCTTACAAGGGACAGGCCTAAGGACAAGGAGGTTGTGAAATACGAAAGAACTCTTGACCCTGTGGATTGTCCAAAGCCTTGGGAAGTTAAGGAAGTTTTGAATGGTTCCACCAATAGCTTCCGTGCATCTAATATATATCCTAGATATATTCGCGTGACTGGTTCTGGGGAAGTTAGGACTATTGAAGAGGAGGTAAGCTGGTCTTATTAAATTGAATGTTTCTATGTTATTTGGATTTTCATGTCACGAGAAGGTAGATAAATTTTAACAATTTTTTAACATTTAACTTTGATTGATATAGTAGTAAGCAAGCTGTTGGCTAAAACTACTATCAGATTAATTTTTGCATTTCATATTCTTGTTTGTAGCCAGCTAAGATATTTGTCCCATTAACTGATTTTTATAGGCAAATGGTGTTAGCGCGGATATCATTTTAAATCGGGGAGTCTCTGAGTGGTGGTCCTTCCATGATATCAACTCACTGGATATAAAAGGCTGCGGAGGGTTGAGAGGGCCTATGGCCATAATTGTATCAGAGGAAACACCGCGTAAGTAGTTTATAATTTTTCACATAGAATGAGAAATCTAGTGTATTATGTTGATCACTAACAATTTTTATGCAATTTTAGAGGGCTTGCTAGGTGATACTCTCAGCAAATTCAGTATATGGGGTCTCTACATCACATTTGTTTTAGCAGTCGGTCGCTTCATCAGACTGCAGTGCTCTGACCTACGGATGAGAATCCCATATGAAAAT</genome_strand>
        <mrna_strand>TATCCAACTTATGTGCTGTCAACCTGATGCAAATACTCTGTGGCTGGTTCCGGATGTGGTTCAGAGAAGATTCATTCTGTCTCTGAAAGATATGGAAGTTAAATTTTCTTGGGTTCTTACAAGGGACAGGCCCAAGGACAAAGAGGTTGTGAAATACGAAAGAACTCTTGATCCTGTGGATTGTCCAAAGCCTTGGGAAGTTAAGAAAGTTTTGAATGGTTCCACCAATAGCTTCCGTGCATATAATATATATCCTAGATATATTCGCGTGACTGGTTCTGGGGAAGTTATGACTATTGAAGAGGAG......................................................................................................................................................................................................................GCAAATGGTGTTAGCGCGGATATCATTTTAAATCGGGGAGTCTCCGAGTGGTGGTCCTTCCATGATATCAACTCACTGGATGTAAAAGGCTGTGGAGGGTTGAGAGGGCCTATGGCCATAATTGTATCAGAGGAAACACCGC.................................................................................AGGGCTTGCTGGGTGAGACTCTCANAACATTCAGTATATGGGGTCTCTACATCACATTTGTTTTAGCAGTTGGTCGCTTCATCAGACTGCAGTGCTCCGACCTACGAATGAGAATCCCATATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338953" ref_strand="+" ref_description="SGN-E338953 [cTOE-21-P4]">
      <seq>agatgaaacaccgcagggcttgctaggttatactctcagcaaattcagtatatggggtctctacatcacatttgttttagcagtcggtcgcttcatcagactgcagtgctctgacctacggatgagaatcccatatgaaaatcttccttcatgtgatagattgattgccatctgtgaggatatatatgctgcaagagctgagggtgagctcgtggtggaggaaatcctatactggacattagtgaagatatacaggtccccgcacatgttgctcgagtatactaagtctgattagcctagtaagaaaagtttactctcaactgcgactgatgtttgtcctaacgcatatgtagaagagtgactaaccaataccccatagaattcatctttatccttgcagtgaacatgccaaaacttccaaacgatcttttttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="48811" stop="49920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49016" g_stop="49029" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49030" i_stop="49110" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49111" g_stop="49255" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="159" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49256" i_stop="49341" i_length="86">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49342" g_stop="49620" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="438" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E338953" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49016" e_stop="49029"/>
          <exon e_start="49111" e_stop="49255"/>
          <exon e_start="49342" e_stop="49620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAACACCGCGTAAGTAGTTTATAATTTTTCACATAGAATGAGAAATCTAGTGTATTATGTTGATCACTAACAATTTTTATGCAATTTTAGAGGGCTTGCTAGGTGATACTCTCAGCAAATTCAGTATATGGGGTCTCTACATCACATTTGTTTTAGCAGTCGGTCGCTTCATCAGACTGCAGTGCTCTGACCTACGGATGAGAATCCCATATGAAAATCTTCCTTCATGTGATAGGTAATACTAAGTCGCAGTCTGATTTTTAATATCTCTGTAAATAAAATCGTACACTTCTAAAAATGCACGATTTTGGTTCCACACAGATTGATTGCCATCTGTGAGGATATATATGCTGCAAGAGCTGAGGGTGAGCTCGTGGTGGAGGAAATCCTATACTGGACATTAGTGAAGATATACAGGTCCCCGCACATGTTGCTCGAGTATACTAAGTCTGATTAGCCTAGTAAGAAAAGTTTACTCTCAACTGCGACTGATGTTTGTCCTAACGCATATGTAGAAGAGTGACTAACCAATACCCCATAGAATTCATCTTTATCCTTGCAGTGAACATGCCAAAACTTCCAAACGATCTTTTTTGTTTT</genome_strand>
        <mrna_strand>AGATGAAACACCGC.................................................................................AGGGCTTGCTAGGTTATACTCTCAGCAAATTCAGTATATGGGGTCTCTACATCACATTTGTTTTAGCAGTCGGTCGCTTCATCAGACTGCAGTGCTCTGACCTACGGATGAGAATCCCATATGAAAATCTTCCTTCATGTGATAG......................................................................................ATTGATTGCCATCTGTGAGGATATATATGCTGCAAGAGCTGAGGGTGAGCTCGTGGTGGAGGAAATCCTATACTGGACATTAGTGAAGATATACAGGTCCCCGCACATGTTGCTCGAGTATACTAAGTCTGATTAGCCTAGTAAGAAAAGTTTACTCTCAACTGCGACTGATGTTTGTCCTAACGCATATGTAGAAGAGTGACTAACCAATACCCCATAGAATTCATCTTTATCCTTGCAGTGAACATGCCAAAACTTCCAAACGATCTTTTTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367130" ref_strand="+" ref_description="SGN-E367130 [cLPT-5-H21]">
      <seq>ttgctaggtgatactctcagcaaattcagtatatggggtctctacatcacatttgttttagcagttggtcgcttcatcagactgcagtgctctgacttacggatgagaatcccatatgaaaatcttccttcatgtgatagattgattgccatctgtgaggatatatatgctgcaagagcagagggtgagctcgtggtggaggaaatcctatactggacattagtgaagatatacaggtccccgcacatgttgctcgagtatactaagtctgattagcctagtaagaaaagtttactctcaactgcaactgatgtttgtcctaacgcatatgtagaagagtgactaaccaataccccatagaattcatctttatccttgcagtgaacatgccaaaacttccaaacgatcttttttgttttagcttgaagtggagcagatgacagaaacatttgtaaatataggcagagtgcaaaatatagcaacagttctgtttaaaacacaccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="48816" stop="50008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49116" g_stop="49255" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49256" i_stop="49341" i_length="86">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49342" g_stop="49708" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="507" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E367130" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49116" e_stop="49255"/>
          <exon e_start="49342" e_stop="49708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTAGGTGATACTCTCAGCAAATTCAGTATATGGGGTCTCTACATCACATTTGTTTTAGCAGTCGGTCGCTTCATCAGACTGCAGTGCTCTGACCTACGGATGAGAATCCCATATGAAAATCTTCCTTCATGTGATAGGTAATACTAAGTCGCAGTCTGATTTTTAATATCTCTGTAAATAAAATCGTACACTTCTAAAAATGCACGATTTTGGTTCCACACAGATTGATTGCCATCTGTGAGGATATATATGCTGCAAGAGCTGAGGGTGAGCTCGTGGTGGAGGAAATCCTATACTGGACATTAGTGAAGATATACAGGTCCCCGCACATGTTGCTCGAGTATACTAAGTCTGATTAGCCTAGTAAGAAAAGTTTACTCTCAACTGCGACTGATGTTTGTCCTAACGCATATGTAGAAGAGTGACTAACCAATACCCCATAGAATTCATCTTTATCCTTGCAGTGAACATGCCAAAACTTCCAAACGATCTTTTTTGTTTTAGCTTGAAGTGGAGCAGATGACAGAAACATATGTAAATATAGGCAGAGCGCAAAATATAGCAACAGTTCTGTGTAAAACACACCTTAT</genome_strand>
        <mrna_strand>TTGCTAGGTGATACTCTCAGCAAATTCAGTATATGGGGTCTCTACATCACATTTGTTTTAGCAGTTGGTCGCTTCATCAGACTGCAGTGCTCTGACTTACGGATGAGAATCCCATATGAAAATCTTCCTTCATGTGATAG......................................................................................ATTGATTGCCATCTGTGAGGATATATATGCTGCAAGAGCAGAGGGTGAGCTCGTGGTGGAGGAAATCCTATACTGGACATTAGTGAAGATATACAGGTCCCCGCACATGTTGCTCGAGTATACTAAGTCTGATTAGCCTAGTAAGAAAAGTTTACTCTCAACTGCAACTGATGTTTGTCCTAACGCATATGTAGAAGAGTGACTAACCAATACCCCATAGAATTCATCTTTATCCTTGCAGTGAACATGCCAAAACTTCCAAACGATCTTTTTTGTTTTAGCTTGAAGTGGAGCAGATGACAGAAACATTTGTAAATATAGGCAGAGTGCAAAATATAGCAACAGTTCTGTTTAAAACACACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549201" ref_strand="+" ref_description="SGN-E549201 [TUS-68-D18]">
      <seq>cctcgtgcgcacgaggcacattctaaggcatttgtgttctagtatttcacttgtgttctttgtagagtgaaataaatattggtgtagttgttctttggtgcatgtaggatcattttcaccctaaccacgttaaatatttttttcttccttattctttgatttcacgtttccgctaacaattggtatcagagccaaagttccacatcagaaaataattactttcattttctgtagttccgaatacattgtagtagaaaaggaagaacaagtaagaaatgagttccatgaagtttaaaattgatagatttagtgggcaaaacaacttcagtatctgaaaaatccagatgatggagttattgcggagggaaggttcaatccatgctattgacgaaaaatacctcgataagatatcgaatttcgataaggagaagattgaaggagatgcattgcgtgtaatccaactgtcccttgcacctaacgtactttgtgaagtgagtacaagtaccgaagagacgaccaaggagttatgggaaaagctagagtacaataatgttgttacaatgacatcttcatacatttaagatggattcaggtactttgttgcaagaccatctaggtgcattcaataaacttgtgatggacttagaaactgctggaattcangangataaaaattgcatgggtcttgctattttcattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="53327" stop="54591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53630" g_stop="54312" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="702" r_length="683" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E549201" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53630" e_stop="54312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAAGGCATTTGTGTTCTAGTATTTCACTTGTGTTCTTTGTAGAGTGAAATAAATATTGGTGTAGTTGTTCTTTGGTGCATGTAGGATCATTTTCACCCTAACCACGTTAAATATTTTTTTCTTCCTTATTCTTTGATTTCACGTTTCCGCTAACAATTGGTATCAGAGCCAAAGTTCCACATCAAATTTTATTTACTTTCATTTTCTGTAGTTCCGAATACATTGAAGTAAAAAAGGAAGAACAAGTAAGAAATGAGTTCCATGAAGTTTAAGGTTGATAGATTTAGTGGGCAAAACAACTTCAATATCTGAAAAATCCAGATGATGGAGTTATTGCGGAGGGAAGGTTCAATCCATGCTATTGACGAAAAATACCTCGATAAGATATCGAATTTCGATAAGGAGAAGATTGAAGGAGATGCATTGCGTGTAATCCAACTGTCCCTTGCACCTAACGTACTTTGTGAAGTGAGAACAAATACCGAAGAGACGACCAAGGAGTTATGGGAAAAGCTAGAGTACAATAATGTTGTTACAATGACATCTTCATACATTTAAGATGGATTCAGGTACTTTGTTGCAAGACCATCTAGGTGCATTCAATAAACTTGTGATGGACTTAGAAACTGCAGGAATTCAGGAGGATAAATCTTGCATGTTCTTTGCTATTTTCATTGAC</genome_strand>
        <mrna_strand>ATTCTAAGGCATTTGTGTTCTAGTATTTCACTTGTGTTCTTTGTAGAGTGAAATAAATATTGGTGTAGTTGTTCTTTGGTGCATGTAGGATCATTTTCACCCTAACCACGTTAAATATTTTTTTCTTCCTTATTCTTTGATTTCACGTTTCCGCTAACAATTGGTATCAGAGCCAAAGTTCCACATCAGAAAATAATTACTTTCATTTTCTGTAGTTCCGAATACATTGTAGTAGAAAAGGAAGAACAAGTAAGAAATGAGTTCCATGAAGTTTAAAATTGATAGATTTAGTGGGCAAAACAACTTCAGTATCTGAAAAATCCAGATGATGGAGTTATTGCGGAGGGAAGGTTCAATCCATGCTATTGACGAAAAATACCTCGATAAGATATCGAATTTCGATAAGGAGAAGATTGAAGGAGATGCATTGCGTGTAATCCAACTGTCCCTTGCACCTAACGTACTTTGTGAAGTGAGTACAAGTACCGAAGAGACGACCAAGGAGTTATGGGAAAAGCTAGAGTACAATAATGTTGTTACAATGACATCTTCATACATTTAAGATGGATTCAGGTACTTTGTTGCAAGACCATCTAGGTGCATTCAATAAACTTGTGATGGACTTAGAAACTGCTGGAATTCANGANGATAAAAATTGCATGGGTCTTGCTATTTTCATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309163" ref_strand="+" ref_description="SGN-E309163 [cLEZ-12-C9]">
      <seq>ctcgtgcgcacgaggcacattctaaggcatttgtgttctagtatttcacttgtgttctttgtagagtgaaataaatattggtgtagttgttctttggtgcatgtaggatcattttcaccctaaccacgttaaatatttttttcttccttattctttgatttcacgtttccgctaacaattggtatcagagccaaagttccacatcagaaaataattactttcattttctgtagttccgaatacattgtagtagaaaaggaagaacaagtaagaaatgagttccatgaagtttaaaattgatagatttagtgggcaaaacaacttcagtatctgaaaaatccagatgatggagttattgcggagggaaggttcaatccatgctattgacgaaaaatacctcgataagatatcgaatttcgataaggagaagattgaaggagatgcattgcgtgtaatccactgtcccttgcacctaacgtactttgtgaagtgagtacaagtaccgaagagacgaccaaggagttatgggaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="53327" stop="54447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53630" g_stop="54147" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="535" r_length="517" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E309163" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53630" e_stop="54147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAAGGCATTTGTGTTCTAGTATTTCACTTGTGTTCTTTGTAGAGTGAAATAAATATTGGTGTAGTTGTTCTTTGGTGCATGTAGGATCATTTTCACCCTAACCACGTTAAATATTTTTTTCTTCCTTATTCTTTGATTTCACGTTTCCGCTAACAATTGGTATCAGAGCCAAAGTTCCACATCAAATTTTATTTACTTTCATTTTCTGTAGTTCCGAATACATTGAAGTAAAAAAGGAAGAACAAGTAAGAAATGAGTTCCATGAAGTTTAAGGTTGATAGATTTAGTGGGCAAAACAACTTCAATATCTGAAAAATCCAGATGATGGAGTTATTGCGGAGGGAAGGTTCAATCCATGCTATTGACGAAAAATACCTCGATAAGATATCGAATTTCGATAAGGAGAAGATTGAAGGAGATGCATTGCGTGTAATCCAACTGTCCCTTGCACCTAACGTACTTTGTGAAGTGAGAACAAATACCGAAGAGACGACCAAGGAGTTATGGGAAAAGC</genome_strand>
        <mrna_strand>ATTCTAAGGCATTTGTGTTCTAGTATTTCACTTGTGTTCTTTGTAGAGTGAAATAAATATTGGTGTAGTTGTTCTTTGGTGCATGTAGGATCATTTTCACCCTAACCACGTTAAATATTTTTTTCTTCCTTATTCTTTGATTTCACGTTTCCGCTAACAATTGGTATCAGAGCCAAAGTTCCACATCAGAAAATAATTACTTTCATTTTCTGTAGTTCCGAATACATTGTAGTAGAAAAGGAAGAACAAGTAAGAAATGAGTTCCATGAAGTTTAAAATTGATAGATTTAGTGGGCAAAACAACTTCAGTATCTGAAAAATCCAGATGATGGAGTTATTGCGGAGGGAAGGTTCAATCCATGCTATTGACGAAAAATACCTCGATAAGATATCGAATTTCGATAAGGAGAAGATTGAAGGAGATGCATTGCGTGTAATCC-ACTGTCCCTTGCACCTAACGTACTTTGTGAAGTGAGTACAAGTACCGAAGAGACGACCAAGGAGTTATGGGAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="59503" stop="58677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59204" g_stop="58977" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59204" e_stop="58977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTATCACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTGAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="+" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>gtcgagtctttttttttttttttttttaataagaagcaaaatctttattcatatgaactgcaattacattgagtttgaaaaggccatcactaaggtagtcttttcctacatacatatcatttttgcttactactactttatcagaaacaaatacacatttaaatccattcttggtcagaattggaattgaaactaaattatttctcaattctggaacatatgagaccatattcaaagtcactaccttgcctgatgtcatctttaataggactttgccagttccttacacctttgcaacagcggagttggccataaataatttctcatctgtaactgctagagtatatgatgaaaataattctttgttggcacaaacatggcatgaggcaccagaatctatccaccattctcttggatttccaaccaagttacattctgaaagcattgcacagagatcgtccatttctcctttggattcacccaagtttgcttgatccttctttatcttgtccttcttaagaccccggctttcattagccctatgaccatgtttaccacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="+" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="54430" stop="63628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62042" g_stop="62069" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62070" i_stop="62792" i_length="723">
            <donor d_prob="0.882" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62793" g_stop="63328" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="562" r_length="536" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="+" ref_id="SGN-E250407" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62042" e_stop="62069"/>
          <exon e_start="62793" e_stop="63328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAGGTCCTATTTTTACCCTCTTAGGTATAGGAACTTGGACTTTGTCTAGACACCCCCACACTTTGAAATATTTCAAATTGGGTTTTCTACCTTTCCATTTTTCATATGGAATTACATTTGTCTTTGAGTGAGGCACTCTATAAAGTATCTGATTTGCTGGAAGGATAGCTTCCCCCCTCAAGTTCTGTGGTAAACCTGAACTTATAAGTAATGCATTCATCATTTCTTTTAAAGTTTGATTTTTTATTTCTGCAATTCCATTAGACTGAGGAGTGTAGGGAGCAATAGTTTGATGGATTATTCCATTTTCTAAACATATTTCTGCAAATGGAGATTCATATTCTCCACCTCTATCACTTCTGATCATTTTGATCTTTTTATCTAACTGATTTTCAACTTCAAGTTTTATATTGCCTAAATGCATCTATTGCTTCATCCTTACTATTTAGCAAATAGACATAACAATATCTAGTGCAATCGTCTATAAAAGTTATGAAATACTTTTTCCCACCACGTGATGGTGTTGACTTCATGTCACAAATATCAGTGTGAATCAATTCTAAAGGATTTGAATTCCTTTCAACAGATTTATAAGAATGCTTAGCATACTTAGATTCAACACAAATTTGACATTTTGATTTATTGCACTCAAATTTTGGCAAAATATTTAAGTTAATCAGTTTTTGCAAGGTTTTGTTATTAACGTGTCCCAAAGGTTCATGCCATAAACATTTAGACTCAAGCAAGTAAGAAGAAGCAAAATCTTTATTCATATAAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATACACATTTAAATTCATTCTTGGTCAGAACTGGAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGACCCTATTCAAAGTCACCACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAACGGAGTTTGCCATAAACAATTTTTCATCTGTAAGTGCTGGAGTATATGATGAAAATAATTCTTTGTTGGCATAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACATAGAACGTCCATTTCTCCTTTGGATTCAGCCAAGTTTGCTTGATCCTTCTTTTTCTTGTCCTTCTTAGGACCCCGGCATTCATTAGCCCTATGACCATGTTTACCACAATT</genome_strand>
        <mrna_strand>GTC-GA-GTCTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAGAAGCAAAATCTTTATTCATATGAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGTCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATACACATTTAAATCCATTCTTGGTCAGAATTGGAATTGAAACTAAATTATTTCTCAATTCTGGAACATATGAGACCATATTCAAAGTCACTACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTACACCTTTGCAACAGCGGAGTTGGCCATAAATAATTTCTCATCTGTAACTGCTAGAGTATATGATGAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCACCCAAGTTTGCTTGATCCTTCTTTATCTTGTCCTTCTTAAGACCCCGGCTTTCATTAGCCCTATGACCATGTTTACCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="63800" stop="62493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63500" g_stop="62793" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63500" e_stop="62793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCAAAAAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGATAATTCAGCAATATC-GGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGTAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGTTCTATGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTATGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTTATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="63652" stop="62493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63352" g_stop="62793" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63352" e_stop="62793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGTTCTATGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTATGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTTATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="63596" stop="62493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63296" g_stop="62793" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="524"/>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63296" e_stop="62793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGTTCTATGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTATGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTTATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419244" ref_strand="-" ref_description="SGN-E419244 [STM-29-A12]">
      <seq>tcaagagatggcagcaaaagatgtctttctatctgactacattgagtctgcagaggttcattaatgagaacgttcctgttatgtcggatgaaactccgcctgaagaacgattcttggtaacagaagcatggacacattctgattttttgtgtaaaaattatattctgagtggcctgcaggatgatctatacaatgtgtacagtaatgtgaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaggatgccggaatgaagaaatttattgtggcaaagtttctggactataagatgatagacagtaagaccgtcgtcacccaagttcaagaattgcaggtcataatccatgatctccttgctgaaggattggttgtgaatgatgcttttcaagtggctgccattatagagaagttacctccattgtggaaggacttcaaaaactacttgaaacataaacgcaaggagatgactgttgaagatctcatggtaaggctgagaatcgaagaggataacaaggccgcagaaaagaggtcgcgtggtaattcagcaatatcaggagtaaatattgtgaagaagatcccacaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64376" stop="63089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64076" g_stop="63696" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63695" i_stop="63624" i_length="72">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63623" g_stop="63389" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="616" r_length="235" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E419244" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64076" e_stop="63696"/>
          <exon e_start="63623" e_stop="63389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTTGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTTTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATACTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGAAGATCTCATAGTAAGGTTGAGAATCAAAAAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGATAATTCAGCAATATC-GGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGA</genome_strand>
        <mrna_strand>TCAAGAGATGGCAGCAAAAGATGTCTTTCTATCTGACTACATTGAGTCTGCAGAGGTTCATTAATGAGAACGTTCCTGTTATGTCGGATGAAACTCCGCCTGAAGAACGATTCTTGGTAACAGAAGCATGGACACATTCTGATTTTTTGTGTAAAAATTATATTCTGAGTGGCCTGCAGGATGATCTATACAATGTGTACAGTAATGTGAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAGGATGCCGGAATGAAGAAATTTATTGTGGCAAAGTTTCTGGACTATAAGATGATAGACAGTAAGACCGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGGTTGTGAATGATGCTTTTCAAGTGGCTGCCATTATAGAGAAGTTACCTCCATTGTGGAAGGACTTCAAAAACTACTTGAAACATAAACGCAAGGAGATGACTGTTGAAGATCTCATGGTAAGGCTGAGAATCGAAGAGGATAACAAGGCCGCAGAAAAGAGGTCGCGTGGTAATTCAGCAATATCAGGAGTAAATATTG-TGAAGAAGATCCCACAAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64491" stop="63212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64191" g_stop="63696" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63695" i_stop="63624" i_length="72">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63623" g_stop="63512" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64191" e_stop="63696"/>
          <exon e_start="63623" e_stop="63512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTTGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTTTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATACTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64670" stop="63227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64370" g_stop="63696" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63695" i_stop="63624" i_length="72">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63623" g_stop="63527" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64370" e_stop="63696"/>
          <exon e_start="63623" e_stop="63527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTTGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTTTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATACTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64704" stop="63375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64404" g_stop="63696" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63695" i_stop="63624" i_length="72">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63623" g_stop="63602" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="727" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64404" e_stop="63696"/>
          <exon e_start="63623" e_stop="63602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTTGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTTTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATACTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAA........................................................................GGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64822" stop="63607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64522" g_stop="63907" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64522" e_stop="63907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGGTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64939" stop="63629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64639" g_stop="63929" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64639" e_stop="63929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64704" stop="63661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64404" g_stop="63961" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64404" e_stop="63961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64979" stop="63668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64679" g_stop="63968" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64679" e_stop="63968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="64938" stop="63699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64638" g_stop="63999" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64638" e_stop="63999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="65078" stop="63821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64779" g_stop="64121" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64779" e_stop="64121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTCAATTTATGATTTTTTTATCACTGAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGC</genome_strand>
        <mrna_strand>GGAAGTCAAATTTTGATTTTTTAAACACTGAAA-ATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254845" ref_strand="+" ref_description="SGN-E254845 [cLEG-33-L11]">
      <seq>aggaagtcaaattttgattttttaaacactgaaaatttggctttcggtgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtaccagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagaataaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagaattgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="65080" stop="63885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64780" g_stop="64185" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E254845" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64780" e_stop="64185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTCAATTTATGATTTTTTTATCACTGAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTA-CAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTC</genome_strand>
        <mrna_strand>AGGAAGTCAAATTTTGATTTTTTAAACACTGAA-AATTTGGCTTTCGGTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACCAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGAATAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGAATTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262710" ref_strand="+" ref_description="SGN-E262710 [cLEG-63-E14]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="65109" stop="63900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64810" g_stop="64200" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E262710" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64810" e_stop="64200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTAT-AAATGAAGTCAATTTATGATTTTTTTATCACTGAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTG-AAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369760" ref_strand="+" ref_description="SGN-E369760 [TUS-25-O3]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="65109" stop="63929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64810" g_stop="64229" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E369760" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64810" e_stop="64229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTAT-AAATGAAGTCAATTTATGATTTTTTTATCACTGAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTG-AAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255327" ref_strand="+" ref_description="SGN-E255327 [cLEG-30-E2]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgatttttgaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="65109" stop="63992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64810" g_stop="64292" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E255327" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64810" e_stop="64292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTAT-AAATGAAGTCAATTTATGATTTTTTTATCACTGAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-GCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTGAAACACTG-AAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="65100" stop="64101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64800" g_stop="64398" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64800" e_stop="64398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTAT-AAATGAAGTCAATTTATGATTTTTTTATCACTGAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGCA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTG-AAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="65046" stop="58509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64746" g_stop="64412" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64746" e_stop="64412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0099F14-VXIp7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0099F14.1" temp_strand="-" temp_description="C09HBa0099F14.1  EU139069.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0099F14 upload_account_name:spain">
        <position start="88091" stop="86684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87791" g_stop="86984" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0099F14.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0099F14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87791" e_stop="86984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCTAGGGAAGGAAAATCACGTCTTCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCAGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGAAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGTTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTAAGCAGATTCATGGGACAACCTGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTTACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2086" PGL_stop="3493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2086" e_stop="2531"/>
            <exon e_start="3451" e_stop="3493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="0.996"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="2086" e_stop="2531" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="2532" i_stop="3450" i_length="919"/>
          </intron>
          <exon e_serial="2" e_score="0.581">
            <gDNA_exon_boundary e_start="3451" e_stop="3493" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2086" stop="2531"/>
              <exon start="3451" stop="3493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313719" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTC : AGAAAAAATATTAGACAAATTGATAATCTCAAAACTCATCTTG</gDNA_template>
            <first_frame> Y  I  C  R  I  A  N  A  I  T  V  F  S  A  L  G  F  M  V  N  L  D  S  I  M  E  T  V  T  L  S  L  S  L  N  L  G  V  H  E  M  L  E  A  E  F  H  V  R  V  A  E  Q  E  A  E  R  R  S  T  S  K  R  R  R  *  F  T  T  H  H  L  H  L  P  F  L  D  C  R  L  C  K  R  *  K  R  L  G  I  Y  *  A  E  S  G  S  A  M  S  P  F  N  *  K  R  S  V  K  E  F  P  S  E  Y  P  L  K  F  T  L  L  I  Y  V  H  *  *  G  V  C  S  *  R  S  K  F  F  F  P  A  M  K  I  F  L  M  F  S :   E  K  I  L  D  K  L  I  I  S  K  L  I  L </first_frame>
            <second_frame>  I  Y  A  G  *  Q  M  P  S  L  Y  S  Q  L  *  A  S  W  L  I  W  T  P  *  W  R  Q  L  P  *  A  Y  L  *  T  L  V  Y  M  R  C  L  K  Q  N  S  M  F  E  L  L  S  K  K  L  N  D  G  A  H  Q  K  G  G  D  S  L  Q  L  I  I  Y  I  C  L  S  W  I  V  D  Y  A  K  D  R  R  D  *  E  S  I  K  L  N  R  V  A  L  C  H  P  L  I  E  K  D  L  *  K  S  F  L  L  N  I  P  L  N  S  H  F  *  F  M  C  I  S  K  E  C  A  A  E  D  Q  S  F  S  S  Q  Q  *  K  F  F  L  C  F   : Q  K  K  Y  *  T  N  *  *  S  Q  N  S  S   </second_frame>
            <third_frame>   Y  M  Q  D  S  K  C  H  H  C  I  L  S  F  R  L  H  G  *  F  G  L  H  N  G  D  S  Y  L  E  L  I  F  K  P  W  C  T  *  D  A  *  S  R  I  P  C  S  S  C  *  A  R  S  *  T  T  E  H  I  K  K  E  E  I  V  Y  N  S  S  S  T  F  A  F  L  G  L  S  I  M  Q  K  I  E  E  I  R  N  L  L  S  *  I  G  *  R  Y  V  T  L  *  L  K  K  I  C  K  R  V  S  F  *  I  S  P  *  I  H  T  F  D  L  C  A  L  V  R  S  V  Q  L  K  I  K  V  F  L  P  S  N  E  N  F  S  Y  V  F  :  R  K  N  I  R  Q  I  D  N  L  K  T  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2086" stop="2283"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YICRIANAITVFSALGFMVNLDSIMETVTLSLSLNLGVHEMLEAEFHVRVAEQEAERRSTSKRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8018" PGL_stop="7140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8018" e_stop="7140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="8018" e_stop="7140" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8018" stop="7140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</gDNA_template>
            <first_frame> I  W  S  V  M  L  Y  E  K  Q  S  T  I  L  *  F  R  *  R  D  S  E  K  F  I  F  R  C  F  Y  G  C  H  *  W  N  G  I  *  L  C  C  F  G  T  L  C  K  D  C  P  C  I  Y  *  A  A  G  R  T  F  C  L  G  I  V  K  R  Y  G  V  F  L  Y  S  Y  M  F  L  R  A  S  Y  P  I  F  F  C  K  S  L  I  C  S  L  E  K  G  I  S  *  R  *  E  W  C  G  R  V  L  L  H  C  R  *  N  E  E  H  M  G  N  D  L  Q  I  Y  M  V  G  N  *  T  L  *  S  H  Q  K  K  F  F  C  K  R  Q  T  F  S  S  *  G  Y  K  V  *  F  N  T  F  P  T  H  L  A  P  V  A  F  N  Q  D  I  F  F  E  L  M  I  N  V  F  H  D  C  L  Y  N  S  F  R  *  I  W  Y  M  F  L  E  I  Y  Y  I  W  F  L  S  *  K  I  *  *  M  *  *  S  V  L  R  Y  I  S  *  *  N  C  N  V  D  L  E  I  M  I  K  N  R  *  I  K  Q  P  K  Q  I  Y  Y  S  V  E  G  S  Y  V  V  S  I  L  L  Q  E  *  W  L  T  R  S  S  S  S  F  D  T  E  E  I  V  *  F  A  T  L  Q  F  L  I  Y  *  E  F  Y  I  L </first_frame>
            <second_frame>  F  G  Q  S  C  Y  M  K  S  N  P  L  F  F  S  F  V  S  V  I  V  K  N  L  F  S  G  A  F  M  D  A  I  S  G  M  E  F  D  F  V  A  S  G  H  Y  A  K  I  V  H  A  S  T  E  Q  L  D  E  P  S  V  L  E  L  S  K  D  M  V  C  F  Y  I  R  T  C  F  L  E  P  L  T  L  F  S  F  V  K  V  *  Y  V  H  L  R  R  G  Y  L  E  D  E  S  G  V  E  E  S  C  F  T  V  G  K  M  K  N  I  W  E  M  T  Y  R  Y  T  W  L  G  I  K  H  Y  S  P  I  K  R  S  S  F  V  R  D  R  H  L  A  V  E  D  T  K  F  D  L  T  P  S  Q  P  T  *  P  P  L  L  L  T  K  I  S  S  L  N  L  *  S  T  S  F  T  T  V  C  I  I  L  S  G  K  F  G  I  C  F  L  R  Y  I  T  F  G  S  Y  L  E  K  Y  S  K  C  D  E  A  S  *  D  I  S  H  N  E  I  V  M  *  I  S  K  L  *  L  K  T  D  K  *  N  N  Q  S  K  Y  I  I  L  L  K  V  H  M  *  Y  Q  Y  C  S  K  N  D  G  *  L  G  V  H  H  L  L  I  Q  K  K  *  F  N  L  P  H  F  N  S  *  F  T  E  S  F  T  S   </second_frame>
            <third_frame>   L  V  S  H  V  I  *  K  A  I  H  Y  S  L  V  S  L  A  *  *  *  K  I  Y  F  Q  V  L  L  W  M  P  L  V  E  W  N  L  T  L  L  L  R  D  I  M  Q  R  L  S  M  H  L  L  S  S  W  T  N  L  L  S  W  N  C  Q  K  I  W  C  V  F  I  F  V  H  V  S  *  S  L  L  P  Y  F  L  L  *  K  F  D  M  F  T  *  E  G  D  I  L  K  M  R  V  V  W  K  S  L  A  S  L  *  V  K  *  R  T  Y  G  K  *  L  T  D  I  H  G  W  E  L  N  I  I  V  P  S  K  E  V  L  L  *  E  T  D  I  *  Q  L  R  I  Q  S  L  I  *  H  L  P  N  P  P  S  P  R  C  F  *  P  R  Y  L  L  *  T  Y  D  Q  R  L  S  R  L  S  V  *  F  F  Q  V  N  L  V  Y  V  S  *  D  I  L  H  L  V  L  I  L  K  N  I  V  N  V  M  K  R  L  K  I  Y  L  I  M  K  L  *  C  R  S  R  N  Y  D  *  K  Q  I  N  K  T  T  K  A  N  I  L  F  C  *  R  F  I  C  S  I  N  T  A  P  R  M  M  V  N  *  E  F  I  I  F  *  Y  R  R  N  S  L  I  C  H  T  S  I  P  D  L  L  R  V  L  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8017" stop="7745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGQSCYMKSNPLFFSFVSVIVKNLFSGAFMDAISGMEFDFVASGHYAKIVHASTEQLDEPSVLELSKDMVCFYIRTCFLEPLTLFSFVKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7744" stop="7526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVHLRRGYLEDESGVEESCFTVGKMKNIWEMTYRYTWLGIKHYSPIKRSSFVRDRHLAVEDTKFDLTPSQPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33261" PGL_stop="33062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33261" e_stop="33062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="33261" e_stop="33062" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593348" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGGCTTAGGTCGCAGGTTCAAGCCCCACACCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAACGGTAGAGGGGTGGGCCCATCGTCAACCGAGTTTAGAAGGCTGTAGTTGGTCCAAAGGGCAGGTCACAGATAGCTTTCTCGGTTATCAAAAAAGAAC</gDNA_template>
            <first_frame> P  K  A  *  L  E  W  Q  K  V  E  D  L  W  L  R  S  Q  V  Q  A  P  H  H  A  K  *  S  P  V  F  K  W  R  T  V  E  G  W  A  H  R  Q  P  S  L  E  G  C  S  W  S  K  G  Q  V  T  D  S  F  L  G  Y  Q  K  R   </first_frame>
            <second_frame>  P  R  P  S  S  S  G  K  R  W  R  I  C  G  L  G  R  R  F  K  P  H  T  M  Q  S  E  A  R  Y  L  S  G  E  R  *  R  G  G  P  I  V  N  R  V  *  K  A  V  V  G  P  K  G  R  S  Q  I  A  F  S  V  I  K  K  E  </second_frame>
            <third_frame>   Q  G  L  A  R  V  A  K  G  G  G  F  V  A  *  V  A  G  S  S  P  T  P  C  K  V  K  P  G  I  *  V  E  N  G  R  G  V  G  P  S  S  T  E  F  R  R  L  *  L  V  Q  R  A  G  H  R  *  L  S  R  L  S  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099F14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44172" PGL_stop="44870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44172" e_stop="44870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="44172" e_stop="44870" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATGGTGTTTCTCAAGTACAATCCATTGGGAATCAAGCTGTAAACAATATTGTGAGCTTTCTAAACATTCCACCAGATGACTCTGATTCTAATGAGACTTCAACTGCTGGAGATGGAATATCTTATGAGAGAGAGGGTGAGAATACTCTGTACACTCATCTGGACCGTTCTACTTCTTTGCAATCTGATAGGAGTAGAACGTCTGAAGCAGCAAGTTTGCAAATTGGGAGAATATTCTACCACATCTGGTTCCAGATGCGTTCAAATAATGATGTTGTGTGCTATTGTGGCTTTCTTCTCGTCTTTCTTTGGAACTTTAGTTTGCTTTCTATGCTGTACCTGGCAGCTCTCTTTCTGTATGCGCTTTGTGTGAACACTGGGCCAAGTTACATTTTCTGGGTTATTATGCTAATCTACACAGAAATATACATTTTGATCCAGTATATTTATCAAATAATTATTCAGCACTGTGGTTTTAGCATTCAGTCCACTACTCTTCAAGAGCTGGGTTTTCCTACCAAAAGGATAACATCATCTTTTGTCATTAGTTCACTGCCACTATTTCTGGTGTACTTGTTTACCCTCATACAGAGCACTATAACGGCAAAAGATGGTGAATGGTTTTCTCTAGGATACAGTACTTGGAAAAGTAGACTTTTGGACCCAAAGGAGGACATAGTGGCATCTGGGTGGATTG</gDNA_template>
            <first_frame> V  M  V  F  L  K  Y  N  P  L  G  I  K  L  *  T  I  L  *  A  F  *  T  F  H  Q  M  T  L  I  L  M  R  L  Q  L  L  E  M  E  Y  L  M  R  E  R  V  R  I  L  C  T  L  I  W  T  V  L  L  L  C  N  L  I  G  V  E  R  L  K  Q  Q  V  C  K  L  G  E  Y  S  T  T  S  G  S  R  C  V  Q  I  M  M  L  C  A  I  V  A  F  F  S  S  F  F  G  T  L  V  C  F  L  C  C  T  W  Q  L  S  F  C  M  R  F  V  *  T  L  G  Q  V  T  F  S  G  L  L  C  *  S  T  Q  K  Y  T  F  *  S  S  I  F  I  K  *  L  F  S  T  V  V  L  A  F  S  P  L  L  F  K  S  W  V  F  L  P  K  G  *  H  H  L  L  S  L  V  H  C  H  Y  F  W  C  T  C  L  P  S  Y  R  A  L  *  R  Q  K  M  V  N  G  F  L  *  D  T  V  L  G  K  V  D  F  W  T  Q  R  R  T  *  W  H  L  G  G  L </first_frame>
            <second_frame>  *  W  C  F  S  S  T  I  H  W  E  S  S  C  K  Q  Y  C  E  L  S  K  H  S  T  R  *  L  *  F  *  *  D  F  N  C  W  R  W  N  I  L  *  E  R  G  *  E  Y  S  V  H  S  S  G  P  F  Y  F  F  A  I  *  *  E  *  N  V  *  S  S  K  F  A  N  W  E  N  I  L  P  H  L  V  P  D  A  F  K  *  *  C  C  V  L  L  W  L  S  S  R  L  S  L  E  L  *  F  A  F  Y  A  V  P  G  S  S  L  S  V  C  A  L  C  E  H  W  A  K  L  H  F  L  G  Y  Y  A  N  L  H  R  N  I  H  F  D  P  V  Y  L  S  N  N  Y  S  A  L  W  F  *  H  S  V  H  Y  S  S  R  A  G  F  S  Y  Q  K  D  N  I  I  F  C  H  *  F  T  A  T  I  S  G  V  L  V  Y  P  H  T  E  H  Y  N  G  K  R  W  *  M  V  F  S  R  I  Q  Y  L  E  K  *  T  F  G  P  K  G  G  H  S  G  I  W  V  D   </second_frame>
            <third_frame>   D  G  V  S  Q  V  Q  S  I  G  N  Q  A  V  N  N  I  V  S  F  L  N  I  P  P  D  D  S  D  S  N  E  T  S  T  A  G  D  G  I  S  Y  E  R  E  G  E  N  T  L  Y  T  H  L  D  R  S  T  S  L  Q  S  D  R  S  R  T  S  E  A  A  S  L  Q  I  G  R  I  F  Y  H  I  W  F  Q  M  R  S  N  N  D  V  V  C  Y  C  G  F  L  L  V  F  L  W  N  F  S  L  L  S  M  L  Y  L  A  A  L  F  L  Y  A  L  C  V  N  T  G  P  S  Y  I  F  W  V  I  M  L  I  Y  T  E  I  Y  I  L  I  Q  Y  I  Y  Q  I  I  I  Q  H  C  G  F  S  I  Q  S  T  T  L  Q  E  L  G  F  P  T  K  R  I  T  S  S  F  V  I  S  S  L  P  L  F  L  V  Y  L  F  T  L  I  Q  S  T  I  T  A  K  D  G  E  W  F  S  L  G  Y  S  T  W  K  S  R  L  L  D  P  K  E  D  I  V  A  S  G  W  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44174" stop="44869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGVSQVQSIGNQAVNNIVSFLNIPPDDSDSNETSTAGDGISYEREGENTLYTHLDRSTSLQSDRSRTSEAASLQIGRIFYHIWFQMRSNNDVVCYCGFLLVFLWNFSLLSMLYLAALFLYALCVNTGPSYIFWVIMLIYTEIYILIQYIYQIIIQHCGFSIQSTTLQELGFPTKRITSSFVISSLPLFLVYLFTLIQSTITAKDGEWFSLGYSTWKSRLLDPKEDIVASGWI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="45185" PGL_stop="46159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45185" e_stop="45514"/>
            <exon e_start="45875" e_stop="46159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.874" e_score="0.991"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="45185" e_stop="45514" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.874">
            <gDNA_intron_boundary i_start="45515" i_stop="45874" i_length="360"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="45875" e_stop="46159" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45185" stop="45514"/>
              <exon start="45875" stop="46159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45185" stop="45514"/>
              <exon start="45875" stop="46119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTGAGGTGGTTTATGCCTGCCCATTGACAGAATGTCCACCTGAACAGTTCAAATCACTCACTCCAGCTGCTGACATAGCAAACGAGATCCGTGGAGCACAAACCAAAGGTGTTGTTGAAGAAGTTGGATTTCCATACCCTATACTCTCCATCATAGGCGGGGGTAGAAGGGAAGTTGATCTTTATGCTTATATCTTTGGTGCTGATCTGAGTGTGTTCTTCTTGGTTGCTATTTTCTACCAATCTGTTAAAAAAAACAAAAGCGAGTTCTTGGATGTTTCCCAACTTGAGGATCAGTTTCCCAAGGACTATGTATTTATATTGATG : GCAATATTCTTCTTGATTGTGCTTGACCGCATCATATACCTCTGTTCATTTGCCACAGGAAAAGTGATCTATTACATTTCAAATCTTGTTCTTTTTACATATGTTGTCACGGAGTATGCTTGGAATATAGATGCACAGCAAAGTGCTGCTGGATTAGCCCTCCGTGCAATATATCTGACAAAAGCAGTATCTCTGGCACTGCAAGCCATACAAATCCGCTATGGTGTTCCTCACAAGAGCACATTGTATCGCCAATTCCTCACCAGCAAAGTTGCTCAAATCAAT</gDNA_template>
            <first_frame> V  F  E  V  V  Y  A  C  P  L  T  E  C  P  P  E  Q  F  K  S  L  T  P  A  A  D  I  A  N  E  I  R  G  A  Q  T  K  G  V  V  E  E  V  G  F  P  Y  P  I  L  S  I  I  G  G  G  R  R  E  V  D  L  Y  A  Y  I  F  G  A  D  L  S  V  F  F  L  V  A  I  F  Y  Q  S  V  K  K  N  K  S  E  F  L  D  V  S  Q  L  E  D  Q  F  P  K  D  Y  V  F  I  L  M  :  A  I  F  F  L  I  V  L  D  R  I  I  Y  L  C  S  F  A  T  G  K  V  I  Y  Y  I  S  N  L  V  L  F  T  Y  V  V  T  E  Y  A  W  N  I  D  A  Q  Q  S  A  A  G  L  A  L  R  A  I  Y  L  T  K  A  V  S  L  A  L  Q  A  I  Q  I  R  Y  G  V  P  H  K  S  T  L  Y  R  Q  F  L  T  S  K  V  A  Q  I  N </first_frame>
            <second_frame>  F  L  R  W  F  M  P  A  H  *  Q  N  V  H  L  N  S  S  N  H  S  L  Q  L  L  T  *  Q  T  R  S  V  E  H  K  P  K  V  L  L  K  K  L  D  F  H  T  L  Y  S  P  S  *  A  G  V  E  G  K  L  I  F  M  L  I  S  L  V  L  I  *  V  C  S  S  W  L  L  F  S  T  N  L  L  K  K  T  K  A  S  S  W  M  F  P  N  L  R  I  S  F  P  R  T  M  Y  L  Y  *  W :   Q  Y  S  S  *  L  C  L  T  A  S  Y  T  S  V  H  L  P  Q  E  K  *  S  I  T  F  Q  I  L  F  F  L  H  M  L  S  R  S  M  L  G  I  *  M  H  S  K  V  L  L  D  *  P  S  V  Q  Y  I  *  Q  K  Q  Y  L  W  H  C  K  P  Y  K  S  A  M  V  F  L  T  R  A  H  C  I  A  N  S  S  P  A  K  L  L  K  S   </second_frame>
            <third_frame>   F  *  G  G  L  C  L  P  I  D  R  M  S  T  *  T  V  Q  I  T  H  S  S  C  *  H  S  K  R  D  P  W  S  T  N  Q  R  C  C  *  R  S  W  I  S  I  P  Y  T  L  H  H  R  R  G  *  K  G  S  *  S  L  C  L  Y  L  W  C  *  S  E  C  V  L  L  G  C  Y  F  L  P  I  C  *  K  K  Q  K  R  V  L  G  C  F  P  T  *  G  S  V  S  Q  G  L  C  I  Y  I  D   : G  N  I  L  L  D  C  A  *  P  H  H  I  P  L  F  I  C  H  R  K  S  D  L  L  H  F  K  S  C  S  F  Y  I  C  C  H  G  V  C  L  E  Y  R  C  T  A  K  C  C  W  I  S  P  P  C  N  I  S  D  K  S  S  I  S  G  T  A  S  H  T  N  P  L  W  C  S  S  Q  E  H  I  V  S  P  I  P  H  Q  Q  S  C  S  N  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45185" stop="45514"/>
                    <exon start="45875" stop="46159"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFEVVYACPLTECPPEQFKSLTPAADIANEIRGAQTKGVVEEVGFPYPILSIIGGGRREVDLYAYIFGADLSVFFLVAIFYQSVKKNKSEFLDVSQLEDQFPKDYVFILMAIFFLIVLDRIIYLCSFATGKVIYYISNLVLFTYVVTEYAWNIDAQQSAAGLALRAIYLTKAVSLALQAIQIRYGVPHKSTLYRQFLTSKVAQIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="48367" PGL_stop="49708"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48367" e_stop="48673"/>
            <exon e_start="48888" e_stop="49029"/>
            <exon e_start="49111" e_stop="49255"/>
            <exon e_start="49342" e_stop="49708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.977"/>
          <exon-intron don_prob="0.998" acc_prob="0.871" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.956" e_score="0.993"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="48367" e_stop="48673" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="48674" i_stop="48887" i_length="214"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="48888" e_stop="49029" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.871">
            <gDNA_intron_boundary i_start="49030" i_stop="49110" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="49111" e_stop="49255" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.956">
            <gDNA_intron_boundary i_start="49256" i_stop="49341" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="49342" e_stop="49708" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48367" stop="48673"/>
              <exon start="48888" stop="49029"/>
              <exon start="49111" stop="49238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49016" stop="49029"/>
              <exon start="49111" stop="49255"/>
              <exon start="49342" stop="49620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49116" stop="49255"/>
              <exon start="49342" stop="49708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCCAACTTATCTGCTGTCAACCTGATGCAAATACTCTGTGGCTGGTTCCGGATGTGGTTCAGAGAAGATTCATTCTGTCTCTGAAAGATATGGAAGTTAAATTTTCTTGGGTTCTTACAAGGGACAGGCCTAAGGACAAGGAGGTTGTGAAATACGAAAGAACTCTTGACCCTGTGGATTGTCCAAAGCCTTGGGAAGTTAAGGAAGTTTTGAATGGTTCCACCAATAGCTTCCGTGCATCTAATATATATCCTAGATATATTCGCGTGACTGGTTCTGGGGAAGTTAGGACTATTGAAGAGGAG : GCAAATGGTGTTAGCGCGGATATCATTTTAAATCGGGGAGTCTCTGAGTGGTGGTCCTTCCATGATATCAACTCACTGGATATAAAAGGCTGCGGAGGGTTGAGAGGGCCTATGGCCATAATTGTATCAGAGGAAACACCGC : AGGGCTTGCTAGGTGATACTCTCAGCAAATTCAGTATATGGGGTCTCTACATCACATTTGTTTTAGCAGTCGGTCGCTTCATCAGACTGCAGTGCTCTGACCTACGGATGAGAATCCCATATGAAAATCTTCCTTCATGTGATAG : ATTGATTGCCATCTGTGAGGATATATATGCTGCAAGAGCTGAGGGTGAGCTCGTGGTGGAGGAAATCCTATACTGGACATTAGTGAAGATATACAGGTCCCCGCACATGTTGCTCGAGTATACTAAGTCTGATTAGCCTAGTAAGAAAAGTTTACTCTCAACTGCGACTGATGTTTGTCCTAACGCATATGTAGAAGAGTGACTAACCAATACCCCATAGAATTCATCTTTATCCTTGCAGTGAACATGCCAAAACTTCCAAACGATCTTTTTTGTTTTAGCTTGAAGTGGAGCAGATGACAGAAACATATGTAAATATAGGCAGAGCGCAAAATATAGCAACAGTTCTGTGTAAAACACACCTTAT</gDNA_template>
            <first_frame> Y  P  T  Y  L  L  S  T  *  C  K  Y  S  V  A  G  S  G  C  G  S  E  K  I  H  S  V  S  E  R  Y  G  S  *  I  F  L  G  S  Y  K  G  Q  A  *  G  Q  G  G  C  E  I  R  K  N  S  *  P  C  G  L  S  K  A  L  G  S  *  G  S  F  E  W  F  H  Q  *  L  P  C  I  *  Y  I  S  *  I  Y  S  R  D  W  F  W  G  S  *  D  Y  *  R  G   : G  K  W  C  *  R  G  Y  H  F  K  S  G  S  L  *  V  V  V  L  P  *  Y  Q  L  T  G  Y  K  R  L  R  R  V  E  R  A  Y  G  H  N  C  I  R  G  N  T  A :   G  L  A  R  *  Y  S  Q  Q  I  Q  Y  M  G  S  L  H  H  I  C  F  S  S  R  S  L  H  Q  T  A  V  L  *  P  T  D  E  N  P  I  *  K  S  S  F  M  *  *  :  I  D  C  H  L  *  G  Y  I  C  C  K  S  *  G  *  A  R  G  G  G  N  P  I  L  D  I  S  E  D  I  Q  V  P  A  H  V  A  R  V  Y  *  V  *  L  A  *  *  E  K  F  T  L  N  C  D  *  C  L  S  *  R  I  C  R  R  V  T  N  Q  Y  P  I  E  F  I  F  I  L  A  V  N  M  P  K  L  P  N  D  L  F  C  F  S  L  K  W  S  R  *  Q  K  H  M  *  I  *  A  E  R  K  I  *  Q  Q  F  C  V  K  H  T  L  </first_frame>
            <second_frame>  I  Q  L  I  C  C  Q  P  D  A  N  T  L  W  L  V  P  D  V  V  Q  R  R  F  I  L  S  L  K  D  M  E  V  K  F  S  W  V  L  T  R  D  R  P  K  D  K  E  V  V  K  Y  E  R  T  L  D  P  V  D  C  P  K  P  W  E  V  K  E  V  L  N  G  S  T  N  S  F  R  A  S  N  I  Y  P  R  Y  I  R  V  T  G  S  G  E  V  R  T  I  E  E  E  :  A  N  G  V  S  A  D  I  I  L  N  R  G  V  S  E  W  W  S  F  H  D  I  N  S  L  D  I  K  G  C  G  G  L  R  G  P  M  A  I  I  V  S  E  E  T  P   : Q  G  L  L  G  D  T  L  S  K  F  S  I  W  G  L  Y  I  T  F  V  L  A  V  G  R  F  I  R  L  Q  C  S  D  L  R  M  R  I  P  Y  E  N  L  P  S  C  D  R :   L  I  A  I  C  E  D  I  Y  A  A  R  A  E  G  E  L  V  V  E  E  I  L  Y  W  T  L  V  K  I  Y  R  S  P  H  M  L  L  E  Y  T  K  S  D  *  P  S  K  K  S  L  L  S  T  A  T  D  V  C  P  N  A  Y  V  E  E  *  L  T  N  T  P  *  N  S  S  L  S  L  Q  *  T  C  Q  N  F  Q  T  I  F  F  V  L  A  *  S  G  A  D  D  R  N  I  C  K  Y  R  Q  S  A  K  Y  S  N  S  S  V  *  N  T  P  Y </second_frame>
            <third_frame>   S  N  L  S  A  V  N  L  M  Q  I  L  C  G  W  F  R  M  W  F  R  E  D  S  F  C  L  *  K  I  W  K  L  N  F  L  G  F  L  Q  G  T  G  L  R  T  R  R  L  *  N  T  K  E  L  L  T  L  W  I  V  Q  S  L  G  K  L  R  K  F  *  M  V  P  P  I  A  S  V  H  L  I  Y  I  L  D  I  F  A  *  L  V  L  G  K  L  G  L  L  K  R  R :   Q  M  V  L  A  R  I  S  F  *  I  G  E  S  L  S  G  G  P  S  M  I  S  T  H  W  I  *  K  A  A  E  G  *  E  G  L  W  P  *  L  Y  Q  R  K  H  R  :  R  A  C  *  V  I  L  S  A  N  S  V  Y  G  V  S  T  S  H  L  F  *  Q  S  V  A  S  S  D  C  S  A  L  T  Y  G  *  E  S  H  M  K  I  F  L  H  V  I   : D  *  L  P  S  V  R  I  Y  M  L  Q  E  L  R  V  S  S  W  W  R  K  S  Y  T  G  H  *  *  R  Y  T  G  P  R  T  C  C  S  S  I  L  S  L  I  S  L  V  R  K  V  Y  S  Q  L  R  L  M  F  V  L  T  H  M  *  K  S  D  *  P  I  P  H  R  I  H  L  Y  P  C  S  E  H  A  K  T  S  K  R  S  F  L  F  *  L  E  V  E  Q  M  T  E  T  Y  V  N  I  G  R  A  Q  N  I  A  T  V  L  C  K  T  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48368" stop="48673"/>
                    <exon start="48888" stop="49029"/>
                    <exon start="49111" stop="49255"/>
                    <exon start="49342" stop="49477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQLICCQPDANTLWLVPDVVQRRFILSLKDMEVKFSWVLTRDRPKDKEVVKYERTLDPVDCPKPWEVKEVLNGSTNSFRASNIYPRYIRVTGSGEVRTIEEEANGVSADIILNRGVSEWWSFHDINSLDIKGCGGLRGPMAIIVSEETPQGLLGDTLSKFSIWGLYITFVLAVGRFIRLQCSDLRMRIPYENLPSCDRLIAICEDIYAARAEGELVVEEILYWTLVKIYRSPHMLLEYTKSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="53630" PGL_stop="54312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53630" e_stop="54312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="53630" e_stop="54312" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53630" stop="54312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53630" stop="54147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTAAGGCATTTGTGTTCTAGTATTTCACTTGTGTTCTTTGTAGAGTGAAATAAATATTGGTGTAGTTGTTCTTTGGTGCATGTAGGATCATTTTCACCCTAACCACGTTAAATATTTTTTTCTTCCTTATTCTTTGATTTCACGTTTCCGCTAACAATTGGTATCAGAGCCAAAGTTCCACATCAAATTTTATTTACTTTCATTTTCTGTAGTTCCGAATACATTGAAGTAAAAAAGGAAGAACAAGTAAGAAATGAGTTCCATGAAGTTTAAGGTTGATAGATTTAGTGGGCAAAACAACTTCAATATCTGAAAAATCCAGATGATGGAGTTATTGCGGAGGGAAGGTTCAATCCATGCTATTGACGAAAAATACCTCGATAAGATATCGAATTTCGATAAGGAGAAGATTGAAGGAGATGCATTGCGTGTAATCCAACTGTCCCTTGCACCTAACGTACTTTGTGAAGTGAGAACAAATACCGAAGAGACGACCAAGGAGTTATGGGAAAAGCTAGAGTACAATAATGTTGTTACAATGACATCTTCATACATTTAAGATGGATTCAGGTACTTTGTTGCAAGACCATCTAGGTGCATTCAATAAACTTGTGATGGACTTAGAAACTGCAGGAATTCAGGAGGATAAATCTTGCATGTTCTTTGCTATTTTCATTGAC</gDNA_template>
            <first_frame> I  L  R  H  L  C  S  S  I  S  L  V  F  F  V  E  *  N  K  Y  W  C  S  C  S  L  V  H  V  G  S  F  S  P  *  P  R  *  I  F  F  S  S  L  F  F  D  F  T  F  P  L  T  I  G  I  R  A  K  V  P  H  Q  I  L  F  T  F  I  F  C  S  S  E  Y  I  E  V  K  K  E  E  Q  V  R  N  E  F  H  E  V  *  G  *  *  I  *  W  A  K  Q  L  Q  Y  L  K  N  P  D  D  G  V  I  A  E  G  R  F  N  P  C  Y  *  R  K  I  P  R  *  D  I  E  F  R  *  G  E  D  *  R  R  C  I  A  C  N  P  T  V  P  C  T  *  R  T  L  *  S  E  N  K  Y  R  R  D  D  Q  G  V  M  G  K  A  R  V  Q  *  C  C  Y  N  D  I  F  I  H  L  R  W  I  Q  V  L  C  C  K  T  I  *  V  H  S  I  N  L  *  W  T  *  K  L  Q  E  F  R  R  I  N  L  A  C  S  L  L  F  S  L   </first_frame>
            <second_frame>  F  *  G  I  C  V  L  V  F  H  L  C  S  L  *  S  E  I  N  I  G  V  V  V  L  W  C  M  *  D  H  F  H  P  N  H  V  K  Y  F  F  L  P  Y  S  L  I  S  R  F  R  *  Q  L  V  S  E  P  K  F  H  I  K  F  Y  L  L  S  F  S  V  V  P  N  T  L  K  *  K  R  K  N  K  *  E  M  S  S  M  K  F  K  V  D  R  F  S  G  Q  N  N  F  N  I  *  K  I  Q  M  M  E  L  L  R  R  E  G  S  I  H  A  I  D  E  K  Y  L  D  K  I  S  N  F  D  K  E  K  I  E  G  D  A  L  R  V  I  Q  L  S  L  A  P  N  V  L  C  E  V  R  T  N  T  E  E  T  T  K  E  L  W  E  K  L  E  Y  N  N  V  V  T  M  T  S  S  Y  I  *  D  G  F  R  Y  F  V  A  R  P  S  R  C  I  Q  *  T  C  D  G  L  R  N  C  R  N  S  G  G  *  I  L  H  V  L  C  Y  F  H  *  </second_frame>
            <third_frame>   S  K  A  F  V  F  *  Y  F  T  C  V  L  C  R  V  K  *  I  L  V  *  L  F  F  G  A  C  R  I  I  F  T  L  T  T  L  N  I  F  F  F  L  I  L  *  F  H  V  S  A  N  N  W  Y  Q  S  Q  S  S  T  S  N  F  I  Y  F  H  F  L  *  F  R  I  H  *  S  K  K  G  R  T  S  K  K  *  V  P  *  S  L  R  L  I  D  L  V  G  K  T  T  S  I  S  E  K  S  R  *  W  S  Y  C  G  G  K  V  Q  S  M  L  L  T  K  N  T  S  I  R  Y  R  I  S  I  R  R  R  L  K  E  M  H  C  V  *  S  N  C  P  L  H  L  T  Y  F  V  K  *  E  Q  I  P  K  R  R  P  R  S  Y  G  K  S  *  S  T  I  M  L  L  Q  *  H  L  H  T  F  K  M  D  S  G  T  L  L  Q  D  H  L  G  A  F  N  K  L  V  M  D  L  E  T  A  G  I  Q  E  D  K  S  C  M  F  F  A  I  F  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53946" stop="54191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIQMMELLRREGSIHAIDEKYLDKISNFDKEKIEGDALRVIQLSLAPNVLCEVRTNTEETTKELWEKLEYNNVVTMTSSYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="59204" PGL_stop="58977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59204" e_stop="58977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="59204" e_stop="58977" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59204" stop="58977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTATCACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTGAATCCGTTTTATCTTGGGAGAAATT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  Y  H  *  K  F  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  *  I  R  F  I  L  G  E  I </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  F  I  T  E  N  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  E  S  V  L  S  W  E  K   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  L  S  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  L  N  P  F  Y  L  G  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0099F14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62042" PGL_stop="63328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62042" e_stop="62069"/>
            <exon e_start="62793" e_stop="63328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.882" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="62042" e_stop="62069" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.882" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62070" i_stop="62792" i_length="723"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="62793" e_stop="63328" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62042" stop="62069"/>
              <exon start="62793" stop="63328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTAGGTCCTATTTTTACCCTCTTAG : TAAGAAGAAGCAAAATCTTTATTCATATAAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATACACATTTAAATTCATTCTTGGTCAGAACTGGAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGACCCTATTCAAAGTCACCACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAACGGAGTTTGCCATAAACAATTTTTCATCTGTAAGTGCTGGAGTATATGATGAAAATAATTCTTTGTTGGCATAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACATAGAACGTCCATTTCTCCTTTGGATTCAGCCAAGTTTGCTTGATCCTTCTTTTTCTTGTCCTTCTTAGGACCCCGGCATTCATTAGCCCTATGACCATGTTTACCACAATT</gDNA_template>
            <first_frame> V  L  G  P  I  F  T  L  L   : V  R  R  S  K  I  F  I  H  I  N  C  N  Y  I  E  F  E  K  A  I  T  K  V  A  F  S  Y  I  H  I  I  F  A  Y  Y  Y  F  I  R  N  K  Y  T  F  K  F  I  L  G  Q  N  W  N  *  N  *  I  L  S  Q  F  W  N  I  *  D  P  I  Q  S  H  H  L  A  *  C  H  L  *  *  D  F  A  S  S  F  H  L  C  N  N  G  V  C  H  K  Q  F  F  I  C  K  C  W  S  I  *  *  K  *  F  F  V  G  I  N  M  A  *  G  T  R  I  Y  P  P  F  S  W  I  S  N  Q  V  T  F  *  K  H  C  T  *  N  V  H  F  S  F  G  F  S  Q  V  C  L  I  L  L  F  L  V  L  L  R  T  P  A  F  I  S  P  M  T  M  F  T  T  I </first_frame>
            <second_frame>  S  *  V  L  F  L  P  S  *  :  *  E  E  A  K  S  L  F  I  *  T  A  I  T  L  S  L  K  R  P  S  L  R  *  P  F  P  T  Y  I  S  F  L  L  T  T  T  L  S  E  T  N  T  H  L  N  S  F  L  V  R  T  G  I  E  T  K  F  F  L  N  S  G  T  Y  E  T  L  F  K  V  T  T  L  P  D  V  I  F  N  R  T  L  P  V  P  S  T  F  A  T  T  E  F  A  I  N  N  F  S  S  V  S  A  G  V  Y  D  E  N  N  S  L  L  A  *  T  W  H  E  A  P  E  S  I  H  H  S  L  G  F  P  T  K  L  H  S  E  S  I  A  H  R  T  S  I  S  P  L  D  S  A  K  F  A  *  S  F  F  F  L  S  F  L  G  P  R  H  S  L  A  L  *  P  C  L  P  Q   </second_frame>
            <third_frame>   L  R  S  Y  F  Y  P  L  S :   K  K  K  Q  N  L  Y  S  Y  K  L  Q  L  H  *  V  *  K  G  H  H  *  G  S  L  F  L  H  T  Y  H  F  C  L  L  L  L  Y  Q  K  Q  I  H  I  *  I  H  S  W  S  E  L  E  L  K  L  N  S  F  S  I  L  E  H  M  R  P  Y  S  K  S  P  P  C  L  M  S  S  L  I  G  L  C  Q  F  L  P  P  L  Q  Q  R  S  L  P  *  T  I  F  H  L  *  V  L  E  Y  M  M  K  I  I  L  C  W  H  K  H  G  M  R  H  Q  N  L  S  T  I  L  L  D  F  Q  P  S  Y  I  L  K  A  L  H  I  E  R  P  F  L  L  W  I  Q  P  S  L  L  D  P  S  F  S  C  P  S  *  D  P  G  I  H  *  P  Y  D  H  V  Y  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62865" stop="63140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPTYISFLLTTTLSETNTHLNSFLVRTGIETKFFLNSGTYETLFKVTTLPDVIFNRTLPVPSTFATTEFAINNFSSVSAGVYDENNSLLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="64810" PGL_stop="62793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64810" e_stop="63696"/>
            <exon e_start="63623" e_stop="62793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="0.949"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="64810" e_stop="63696" e_length="1115"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="63695" i_stop="63624" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="63623" e_stop="62793" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64810" stop="64200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64810" stop="64229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64810" stop="64292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64800" stop="64398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64780" stop="64185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64779" stop="64121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64746" stop="64412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64679" stop="63968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64639" stop="63929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64638" stop="63999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64522" stop="63907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64404" stop="63696"/>
              <exon start="63623" stop="63602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64404" stop="63961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64370" stop="63696"/>
              <exon start="63623" stop="63527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64191" stop="63696"/>
              <exon start="63623" stop="63512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64076" stop="63696"/>
              <exon start="63623" stop="63389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63500" stop="62793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63352" stop="62793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63296" stop="62793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAATGAAGTCAATTTATGATTTTTTTATCACTGAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTATATTCTATATTATTTTCTGCTTCATCTTATTTCTTTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGCAGTTTCTGTATTTGAGGTTTCTTGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGATGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGACTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGCTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTTGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTTTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG : GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGAAGATCTCATAGTAAGGTTGAGAATCAAAAAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGATAATTCAGCAATATCGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGTAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGTTCTATGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTATGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTTATATGAATAAAGATTTTGCTTCTTCTTA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  M  K  S  I  Y  D  F  F  I  T  E  K  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  I  S  Y  I  L  Y  Y  F  L  L  H  L  I  S  F  S  V  S  V  Y  *  L  Y  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  N  D  *  F  K  S  N  K  *  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  D  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  A  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  L  S  A  R  *  S  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R :   I  D  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  G  D  D  C  *  R  S  H  S  K  V  E  N  Q  K  G  *  *  G  C  R  K  E  V  T  *  *  F  S  N  I  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  A  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  V  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  Y  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  F  M  A  N  S  V  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  E  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  V  I  A  V  Y  M  N  K  D  F  A  S  S   </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  *  S  Q  F  M  I  F  L  S  L  K  N  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  L  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  F  L  I  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  S  S  F  C  I  *  G  F  L  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  M  T  N  S  S  Q  T  N  D  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  T  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  M  L  S  L  Q  K  L  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  C  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  V  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V  E  D  L  I  V  R  L  R  I  K  K  D  N  K  A  A  E  K  R  S  R  D  N  S  A  I  S  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  V  I  L  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  A  G  V  L  R  R  T  R  K  R  R  I  K  Q  T  W  L  N  P  K  E  K  W  T  F  Y  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  M  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  N  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  *  L  Q  F  I  *  I  K  I  L  L  L  L  </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  N  E  V  N  L  *  F  F  Y  H  *  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  C  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  Y  F  L  Y  S  I  L  F  S  A  S  S  Y  F  F  F  C  F  C  L  L  T  L  *  I  Q  V  I  V  R  I  T  I  L  R  N  L  A  V  S  V  F  E  V  S  *  D  *  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  *  L  I  Q  V  K  Q  M  M  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  C  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  M  Q  K  P  Q  K  N  F  G  M  L  *  K  R  S  T  K  Q  K  M  S  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  :  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  K  I  S  *  *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  I  I  Q  Q  Y  R  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  S  I  W  S  K  K  *  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  P  G  S  *  E  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  R  S  M  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  *  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  C  N  C  S  L  Y  E  *  R  F  C  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64209" stop="63696"/>
                    <exon start="63623" stop="63427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKMTNSSQTNDGTVSAATTTVAHNRSNAALAPTEKPAKFSGVDFKRWQQKMFFYLTMLSLQKLINENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSCLQDDLYNVYSNAKTSKELWDALEKKYKTEDVGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVAAIIEKLPPLWKDFKNYLKHKRKEMTVEDLIVRLRIKKDNKAAEKRSRDNSAISE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63445" stop="62795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNIGVNFVEEDSTKLKKRKKASGPKSNPPKKKFNGNCFNCGKHGHRANECRGPKKDKKKKDQANLAESKGEMDVLCAMLSECNLVGNPREWWIDSGASCHVYANKELFSSYTPALTDEKLFMANSVVAKVEGTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSIPVLTKNEFKCVFVSDKVVVSKNDMYVGKGYLSDGLFKLNVIAVYMNKDFASS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64581" stop="64384"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITLGTVRGLNFLRTHSSFCGLGLFLIFYIIFCFILFLFLFLFINFINTSYCKNNNLKKFSSFCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="87791" PGL_stop="86984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87791" e_stop="86984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="87791" e_stop="86984" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87791" stop="86984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCTAGGGAAGGAAAATCACGTCTTCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCAGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGAAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGTTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTAAGCAGATTCATGGGACAACCTGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTTACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  *  G  R  K  I  T  S  S  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  R  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  E  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  L  G  K  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  K  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  K  Q  I  H  G  T  T  W  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  L  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  L  G  K  E  N  H  V  F  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  Q  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  V  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  K  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  Y  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0099F14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87789" stop="86986"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVLGKENHVFKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTQSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYVMVCTRPDLAHAVSVVSRFMGQPGKEHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSYYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 119 chains have been computed
$ 
$ memory statistics:
$ 200512 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 5897 bytes was the average size of a spliced alignment
$ 17640 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1603 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 142 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:18:56
-->
