<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:19:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251338" ref_strand="+" ref_description="SGN-E251338 [cLEG-23-H14]">
      <seq>tccggtttggtttatgggagactttttgtcactggaaagcatacaaggaagagtgacattattaacatgttagggagttctagattgagcccagacgacattagatttgagtacaacatgaactatgctccagtttcagtgatgattcagttcccttctcgaaattcttatgaggctacacttagggaaggaagtcggaagggtggcttattcagaatggagagggttggtcgtcagcagtgggactctttgccacgctacgatggaaagactattttattgcaaggggtccctcgaaatgcagtagccgaagatgtggaacgtttccttgctggttgccagtatgatgcatcggcaattcaaatgttcggtagaccacaacgagctgctgatagaccaccaactagaacagtctttgtggagttcccctcacaggctaaggcaacacatgcatttattacgaagaacagaggtttctgtcttaataaccaaatcacagtgcgacttcttcagtgatctcatccatctccaagataattatctacgttttgtttccctgtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="1" stop="4367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="221" g_stop="356" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="140" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="357" i_stop="3166" i_length="2810">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3167" g_stop="3251" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="225" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3252" i_stop="3341" i_length="90">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3342" g_stop="3389" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="273" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3390" i_stop="3680" i_length="291">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3681" g_stop="3802" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="395" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3803" i_stop="3897" i_length="95">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3898" g_stop="4067" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="565" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E251338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="221" e_stop="356"/>
          <exon e_start="3167" e_stop="3251"/>
          <exon e_start="3342" e_stop="3389"/>
          <exon e_start="3681" e_stop="3802"/>
          <exon e_start="3898" e_stop="4067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTTATGGGAGACTTTTTGTCACTGGAAAGCATACAAGGAAGAGTGACATTATTAACATGTTAGGGAGTTCTAGATTGAGCCCAGACGACATTAGATTTGAGTACAACATGAACTATGCTCCAGTTTCAGTGTAAGTTTTCTTTTATGATTTAAGGTTTAATCTCTATGAGGAAATATATCTTGTCATTGTGGTTATGATTTCTGAGCACGCAAGGGTGTGATTTAGTTGTCAATGAAGCTAGAATGGATCATGGATCACGAGAGACCAGGGTTCAAGGCCCTGCAAAGCTCTTGGTGATTTCTCTTCATCTTTTGAAGTCTTAATGGACAGATTTGCCCGGTATCTGTGTTGGATACTTTTGTGAGCATCTGATTGCTTTTCGAAGGTCGTAATATATGGACCTCCTTGTGATCAACTTGTTCTCTGGCAAAAATTATAGGTGTTTTTTTTCTTTATTATTTCCAACTTGTTTTATGTCCAAGACATGCCAGTGCTTGCATCCATTTTAAAATAACGCTACTATAATTGAATCATTGGATAATACGTATAGACCTCCTCAAACTTGTCCCCTTTTTCCAACTATGCACTAAAATTTTGTGGGGTTTCAATACCCCCTATTGTAATTCAAAGTGTATCTATTACCACCTTGACTATTGACATGAAAGAGGGGAAGTGCTTAAAATTACACCATGGCTGTGAAAGCCAAAAGCAAATCTAAAGCATACAGCCTCTTTAACACATGATGCAATTGCCCCAAGTCAAATCTTTCCTTCTTCAAAAATTCTTTCTCCGACACGAAAGTACGAACAGTTTTTAGAAAAAGGATGCTTTTTTCCAAGCTCCTGCCCATCTCTGCCAGATACCACCTCTCCTCCTTCAATCTATCTCAATGATCCAAAACCATTTCTTCTCTTAAATTTCTATACTGTTTCTTCACTTTCCTTTTTACTGTTAAACAACACGATTTTTTAAAGTTATCCATCATTCTTGAGAGAAACCGTGATAAGCTATTGTCAATGCCATCTACGTTTTTTCTGTTTTGTTAAATTGTTACTCACAGTAGAACCACACACCCTCCCACGAATTTCTCACTCTCTTTCTTGCTTCTCCAAACTGAACCGCCATACGCACGACCCAACTTTCAAACTACAAAAGACAATATTAAATTATAGGCTTTTGGCTAAAGCTGAGCCATCATTACCATCCATGGTGGCCGGGGTCATATAAATACAGAACTATTACTCCTTTAACGGAGTACACATGATTTCACTTCTTTTAGTATATTATGTTTTGTTTCTCTGTTTGAGGAAGAGCAAAAAAAACCGAAGCAAATAAAAATCCATCAATGTTAAGCTCTATTAGTATGTGTTTGCATGTGGGGGAGGAGAAGAGGAACATATGGGAGATGAATAGAGACAAGGAAATGTGAAGCAGATAGGAAAAATGAAGAGAAATAATACTAAAGAAAGCGTGTTTAGGGCGGCGGCGGGTTGAAGGTTTGAAGAAGAAGACTTCTTCTTTATACGACATTTTTCATTTTTTATTTTTAACTTTTTAATGTTTTAAATTAGAAAATATTATGCACTCTCTTTAAAACGTGTGGAATCACGTATTACTCCAAGTCAGCAATGTTAATGCCACATTTGTTCGGATACAATGGTCAGTTGTTCGGTCAATTTGGCGCGAGTGTTCTTAATTGACCTAACATTCCCTCCATCCTACAAAGTTGGTCCAACCACCATTTTGTAGAACTTGCCTTTAAGCTCATGTGACACCTTATCACACAAGACTCCGAAAGTGAGCCTCCATTTCATCCACCCTGCACCAATACGATGAGTGACATCATCATCAATCTCTTGATTACTTTGGATAATAGACCAAAGATACTTGAAACTTTCTTTGTTTTGATAGCCTCGGTATCAGGCCTCACTTCCACGCGAGACTCATGTGTTACATCAGTGAACTTGGAGTCACTTGCACTCCAGGTATTCTCTTTTGGTATAGGCAATTTCCTGAAAGGATCAATGTATAAAAACTTGACAGGATATGGATTCTTTGTAAAGGTAATCTTATCATTTGTTTTAATGAAGGGTTATCTTATCAGTTGTTAGCAATATTTGGACTCATACTATTTTCTCAAAAGCTTAGAATGAATAACTAAGAGTGCGAATGGTACTGGAACATAAACCCTTAAGGAAAGGTCTTCTTATACATCCTTATATAGTTATATATAACCCAGCACCTTCTTAATACACGCAGATGCTTATTAACAAAATACTTTACTTTTACCAACCAAACAAACTAAGGTGCCATTTTGTTTAGGAGCAAGTTATGCGGGAATTAATAATGTAGGGATTGTAATGCAAAGATTTCCGGGGCTTAGTATTGTAGGAATTGTAATGCAGAGATTAACTAATGTAGAGTATATGGGGACACGATAAAAAAGGTAAGCGAACAATGCATATTTATATTTTGTTTAATATATAAATTGCACTACCTTATGCTGCAACCAAACGGCCCCGTGGAGTTTTCAGGATATATCATTTGTTATCAGATTGGATGTCTAATGTCTTGCTTCATTTTTTACATAATTTGTACGGCAGTATTGACTCGTAGCTTGTGAGTTAATCTGAATGACACCACCAATACTTGGTCATTGCGGGTAATAAATTAGGACTTTTTAGTTTATTCCATTTTCCTAATGATGTTTCTTGTCACAGTTGTTCCCTTTTCGATCAATAGTTCTTGAAGTTGTCAATTTTATTTGCATTTTTTCTGTACTTTGTTGTTTGCTCAACGAGAGAGTAGTCTAAGCTTTCTTGCCCGTTTGTTTAATATATGCTTATCATAAGTAAATTGCTTTAAATATTACTGTTACTGCTTTATCAGAAATGAAAATACTTACTACTGTGCCATTCCCTATTTTATCTAATGAATAGGATGATTCAGTTCCCTTCTCGAAATTCTTATGAGGCTACACTTAGGGAAGGAAGTCGGAAGGGTGGCTTATTCAGAATGGAGAGGGTACTGTTTCAATATACTTCTTCTTGATTATTAATCTCTGGAGGGTCACAGGCAAAATTTTCATTTCCTCTAAATTTTTGATGATTATAGGTTGGTCGTCAGCAGTGGGACTCTTTGCCACGCTACGATGGAAAGACTGTAAGTCCGGTCTCTAGACTCTAATGTTTACTGTCTCCATTCTTTTTTCTGTGCTGTTAGATGGTGGTGTAAGGGCTGATTGATTTTATTCTATATGTCTAAGCCTTAGTCATAGCATAGTTACTTGATACTGTGTTGCCGGGAGGTAATGCTTACAGTGTAGTAGTCGAGGTGTGTGCAAGCTGACTCTGATGATAGTTTTATTTTTATAAAACAACGAATTATTCTTTTTTCCTGAATGAGGTTCGTGTTTTGAAGCAAAAATCTAAAGATGATTGTTGGCATTATCAGATTTTATTGCAAGGGGTCCCTCGAAATGCAGTAGCCGAAGATGTGGAACGTTTCCTTGCTGGTTGCCAGTATGATGCATCGGCAATTCAAATGTTCGGTAGACCACAACGAGCTGCTGATAGGTATCTAAGCTCTACGACTCACCTATCGATGGCTTTATTCACTCGTATGTGTTCTCTGCTAGTAATTAGATGGATTTCTGGCTTATTTGTTGCAGACCACCAACTAGAACAGTCTTTGTGGAGTTCCCCTCACAGGCTAAGGCAACACATGCATTTATTACGAAGAACAGAGGTTTCTGTCTTAATAACCAAATCACAGTGCGACTTCTTCAGTGATCTCATCCATCTCCAAGATAATTATCTACGTTTTGTTTCCCTGTTTGGA</genome_strand>
        <mrna_strand>GTTTGGTTTATGGGAGACTTTTTGTCACTGGAAAGCATACAAGGAAGAGTGACATTATTAACATGTTAGGGAGTTCTAGATTGAGCCCAGACGACATTAGATTTGAGTACAACATGAACTATGCTCCAGTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTCAGTTCCCTTCTCGAAATTCTTATGAGGCTACACTTAGGGAAGGAAGTCGGAAGGGTGGCTTATTCAGAATGGAGAGG..........................................................................................GTTGGTCGTCAGCAGTGGGACTCTTTGCCACGCTACGATGGAAAGACT...................................................................................................................................................................................................................................................................................................ATTTTATTGCAAGGGGTCCCTCGAAATGCAGTAGCCGAAGATGTGGAACGTTTCCTTGCTGGTTGCCAGTATGATGCATCGGCAATTCAAATGTTCGGTAGACCACAACGAGCTGCTGATAG...............................................................................................ACCACCAACTAGAACAGTCTTTGTGGAGTTCCCCTCACAGGCTAAGGCAACACATGCATTTATTACGAAGAACAGAGGTTTCTGTCTTAATAACCAAATCACAGTGCGACTTCTTCAGTGATCTCATCCATCTCCAAGATAATTATCTACGTTTTGTTTCCCTGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617724" ref_strand="+" ref_description="SGN-E617724 [66577]">
      <seq>gttacattcttaacatgttagggagttctagattgagcccagatgacgttagatttgagtacaacatgaactatgctccagtttcagtgatgattcagttccctactcgaaattcttatgaggctacacttagggaaggaaatcggaagggtggcttattcagaatggagagggttggtcgtcaacagtgggacactttgccacgctatgatggaaaaactattttattggtaggggtccctcgaaatgcagttgccgaagatgtggaacgtttccttgctggttgccagtatgatgcatcagcaatccaaatgttcggcagaccacaacgagcttctgatagaccaccaactagaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="1" stop="4102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="269" g_stop="356" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="357" i_stop="3166" i_length="2810">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.735" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3167" g_stop="3251" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="173" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3252" i_stop="3341" i_length="90">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3342" g_stop="3389" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="221" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3390" i_stop="3680" i_length="291">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3681" g_stop="3802" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="343" r_length="122" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3803" i_stop="3897" i_length="95">
            <donor d_prob="0.875" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3898" g_stop="3914" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="360" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E617724" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="269" e_stop="356"/>
          <exon e_start="3167" e_stop="3251"/>
          <exon e_start="3342" e_stop="3389"/>
          <exon e_start="3681" e_stop="3802"/>
          <exon e_start="3898" e_stop="3914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACATTATTAACATGTTAGGGAGTTCTAGATTGAGCCCAGACGACATTAGATTTGAGTACAACATGAACTATGCTCCAGTTTCAGTGTAAGTTTTCTTTTATGATTTAAGGTTTAATCTCTATGAGGAAATATATCTTGTCATTGTGGTTATGATTTCTGAGCACGCAAGGGTGTGATTTAGTTGTCAATGAAGCTAGAATGGATCATGGATCACGAGAGACCAGGGTTCAAGGCCCTGCAAAGCTCTTGGTGATTTCTCTTCATCTTTTGAAGTCTTAATGGACAGATTTGCCCGGTATCTGTGTTGGATACTTTTGTGAGCATCTGATTGCTTTTCGAAGGTCGTAATATATGGACCTCCTTGTGATCAACTTGTTCTCTGGCAAAAATTATAGGTGTTTTTTTTCTTTATTATTTCCAACTTGTTTTATGTCCAAGACATGCCAGTGCTTGCATCCATTTTAAAATAACGCTACTATAATTGAATCATTGGATAATACGTATAGACCTCCTCAAACTTGTCCCCTTTTTCCAACTATGCACTAAAATTTTGTGGGGTTTCAATACCCCCTATTGTAATTCAAAGTGTATCTATTACCACCTTGACTATTGACATGAAAGAGGGGAAGTGCTTAAAATTACACCATGGCTGTGAAAGCCAAAAGCAAATCTAAAGCATACAGCCTCTTTAACACATGATGCAATTGCCCCAAGTCAAATCTTTCCTTCTTCAAAAATTCTTTCTCCGACACGAAAGTACGAACAGTTTTTAGAAAAAGGATGCTTTTTTCCAAGCTCCTGCCCATCTCTGCCAGATACCACCTCTCCTCCTTCAATCTATCTCAATGATCCAAAACCATTTCTTCTCTTAAATTTCTATACTGTTTCTTCACTTTCCTTTTTACTGTTAAACAACACGATTTTTTAAAGTTATCCATCATTCTTGAGAGAAACCGTGATAAGCTATTGTCAATGCCATCTACGTTTTTTCTGTTTTGTTAAATTGTTACTCACAGTAGAACCACACACCCTCCCACGAATTTCTCACTCTCTTTCTTGCTTCTCCAAACTGAACCGCCATACGCACGACCCAACTTTCAAACTACAAAAGACAATATTAAATTATAGGCTTTTGGCTAAAGCTGAGCCATCATTACCATCCATGGTGGCCGGGGTCATATAAATACAGAACTATTACTCCTTTAACGGAGTACACATGATTTCACTTCTTTTAGTATATTATGTTTTGTTTCTCTGTTTGAGGAAGAGCAAAAAAAACCGAAGCAAATAAAAATCCATCAATGTTAAGCTCTATTAGTATGTGTTTGCATGTGGGGGAGGAGAAGAGGAACATATGGGAGATGAATAGAGACAAGGAAATGTGAAGCAGATAGGAAAAATGAAGAGAAATAATACTAAAGAAAGCGTGTTTAGGGCGGCGGCGGGTTGAAGGTTTGAAGAAGAAGACTTCTTCTTTATACGACATTTTTCATTTTTTATTTTTAACTTTTTAATGTTTTAAATTAGAAAATATTATGCACTCTCTTTAAAACGTGTGGAATCACGTATTACTCCAAGTCAGCAATGTTAATGCCACATTTGTTCGGATACAATGGTCAGTTGTTCGGTCAATTTGGCGCGAGTGTTCTTAATTGACCTAACATTCCCTCCATCCTACAAAGTTGGTCCAACCACCATTTTGTAGAACTTGCCTTTAAGCTCATGTGACACCTTATCACACAAGACTCCGAAAGTGAGCCTCCATTTCATCCACCCTGCACCAATACGATGAGTGACATCATCATCAATCTCTTGATTACTTTGGATAATAGACCAAAGATACTTGAAACTTTCTTTGTTTTGATAGCCTCGGTATCAGGCCTCACTTCCACGCGAGACTCATGTGTTACATCAGTGAACTTGGAGTCACTTGCACTCCAGGTATTCTCTTTTGGTATAGGCAATTTCCTGAAAGGATCAATGTATAAAAACTTGACAGGATATGGATTCTTTGTAAAGGTAATCTTATCATTTGTTTTAATGAAGGGTTATCTTATCAGTTGTTAGCAATATTTGGACTCATACTATTTTCTCAAAAGCTTAGAATGAATAACTAAGAGTGCGAATGGTACTGGAACATAAACCCTTAAGGAAAGGTCTTCTTATACATCCTTATATAGTTATATATAACCCAGCACCTTCTTAATACACGCAGATGCTTATTAACAAAATACTTTACTTTTACCAACCAAACAAACTAAGGTGCCATTTTGTTTAGGAGCAAGTTATGCGGGAATTAATAATGTAGGGATTGTAATGCAAAGATTTCCGGGGCTTAGTATTGTAGGAATTGTAATGCAGAGATTAACTAATGTAGAGTATATGGGGACACGATAAAAAAGGTAAGCGAACAATGCATATTTATATTTTGTTTAATATATAAATTGCACTACCTTATGCTGCAACCAAACGGCCCCGTGGAGTTTTCAGGATATATCATTTGTTATCAGATTGGATGTCTAATGTCTTGCTTCATTTTTTACATAATTTGTACGGCAGTATTGACTCGTAGCTTGTGAGTTAATCTGAATGACACCACCAATACTTGGTCATTGCGGGTAATAAATTAGGACTTTTTAGTTTATTCCATTTTCCTAATGATGTTTCTTGTCACAGTTGTTCCCTTTTCGATCAATAGTTCTTGAAGTTGTCAATTTTATTTGCATTTTTTCTGTACTTTGTTGTTTGCTCAACGAGAGAGTAGTCTAAGCTTTCTTGCCCGTTTGTTTAATATATGCTTATCATAAGTAAATTGCTTTAAATATTACTGTTACTGCTTTATCAGAAATGAAAATACTTACTACTGTGCCATTCCCTATTTTATCTAATGAATAGGATGATTCAGTTCCCTTCTCGAAATTCTTATGAGGCTACACTTAGGGAAGGAAGTCGGAAGGGTGGCTTATTCAGAATGGAGAGGGTACTGTTTCAATATACTTCTTCTTGATTATTAATCTCTGGAGGGTCACAGGCAAAATTTTCATTTCCTCTAAATTTTTGATGATTATAGGTTGGTCGTCAGCAGTGGGACTCTTTGCCACGCTACGATGGAAAGACTGTAAGTCCGGTCTCTAGACTCTAATGTTTACTGTCTCCATTCTTTTTTCTGTGCTGTTAGATGGTGGTGTAAGGGCTGATTGATTTTATTCTATATGTCTAAGCCTTAGTCATAGCATAGTTACTTGATACTGTGTTGCCGGGAGGTAATGCTTACAGTGTAGTAGTCGAGGTGTGTGCAAGCTGACTCTGATGATAGTTTTATTTTTATAAAACAACGAATTATTCTTTTTTCCTGAATGAGGTTCGTGTTTTGAAGCAAAAATCTAAAGATGATTGTTGGCATTATCAGATTTTATTGCAAGGGGTCCCTCGAAATGCAGTAGCCGAAGATGTGGAACGTTTCCTTGCTGGTTGCCAGTATGATGCATCGGCAATTCAAATGTTCGGTAGACCACAACGAGCTGCTGATAGGTATCTAAGCTCTACGACTCACCTATCGATGGCTTTATTCACTCGTATGTGTTCTCTGCTAGTAATTAGATGGATTTCTGGCTTATTTGTTGCAGACCACCAACTAGAACAG</genome_strand>
        <mrna_strand>GTTACATTCTTAACATGTTAGGGAGTTCTAGATTGAGCCCAGATGACGTTAGATTTGAGTACAACATGAACTATGCTCCAGTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTCAGTTCCCTACTCGAAATTCTTATGAGGCTACACTTAGGGAAGGAAATCGGAAGGGTGGCTTATTCAGAATGGAGAGG..........................................................................................GTTGGTCGTCAACAGTGGGACACTTTGCCACGCTATGATGGAAAAACT...................................................................................................................................................................................................................................................................................................ATTTTATTGGTAGGGGTCCCTCGAAATGCAGTTGCCGAAGATGTGGAACGTTTCCTTGCTGGTTGCCAGTATGATGCATCAGCAATCCAAATGTTCGGCAGACCACAACGAGCTTCTGATAG...............................................................................................ACCACCAACTAGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339249" ref_strand="+" ref_description="SGN-E339249 [cTOF-4-I4]">
      <seq>tttcatctgggacctggtcaggggactgatttttgtgatgatagctcagaatttaattcgggtgatagtacatgggctgatgattatttcagcaatctgaactcatccaaagttgcatcaggggacacttgcgacgtgaaaaatgagagcactacagttgagcaccagttagaagtttctgaagtagatgggaaacatcttgatcgaactccggaagatgacctgaagaaccgggaagaagatctttccatgaagagtactgtggagagcacatcatgcagcattaagagggatgatgttttcaagagctgtctagagctatctgcattagccatgcaggctgaagatgaggttaatcagtcagatacggtttctcagtcggatattcagggagttgttgaagatgtaaaggagacgtctcataggagtccttctgcaatcagtgccgaagatatacatcctgagaaattgggaaatgaaaatggcactcatgattctgacagtgtaacccttcagaaaagtgacttggacgtagagcataatgcttcagatagtgcaagagaccatccttttatgaatgatgaacagtcaaaggaacatgctgatttaacagtagcagcagagcaggcacaaagtgaactgcaaggattcgatgaaagcaccgaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="11627" stop="12895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11927" g_stop="12595" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E339249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11927" e_stop="12595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTGGGACCTGGTCAGGGGACTGATTTTTGTGATGATAGCTCAGAATTTAATTCGGGTGATAGTACATGGGCTGATGATTATTTCAGCAATCTGAACTCATCCAAAGTTGCATCAGGGGACACTTGCGACGTGAAAAATGAGAGCACTACAGTTGAGCACCAGTTAGAAGTTTCTGAAGTAGATGGGAAACATCTTGATCGAACTCCGGAAGATGACCTGAAGAACCGGGAAGAAGATCTTTCCATGAAGAGTACTGTGGAGAGCACATCATGCAGCATTAAGAGGGATGATGTTTTCAAGAGCTGTCTAGAGCTATCTGCATTAGCCATGCAGGCTGAAGATGAGGTTAATCAGTCAGATACGGTTTCTCAGTCGGATATTCAGGGAGTTGTTGAAGATGTAAAGGAGACGTCTCATAGGAGTCCTTCTGCAATCAGTGCCGAAGATATACATCCTGAGAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGT</genome_strand>
        <mrna_strand>TTTCATCTGGGACCTGGTCAGGGGACTGATTTTTGTGATGATAGCTCAGAATTTAATTCGGGTGATAGTACATGGGCTGATGATTATTTCAGCAATCTGAACTCATCCAAAGTTGCATCAGGGGACACTTGCGACGTGAAAAATGAGAGCACTACAGTTGAGCACCAGTTAGAAGTTTCTGAAGTAGATGGGAAACATCTTGATCGAACTCCGGAAGATGACCTGAAGAACCGGGAAGAAGATCTTTCCATGAAGAGTACTGTGGAGAGCACATCATGCAGCATTAAGAGGGATGATGTTTTCAAGAGCTGTCTAGAGCTATCTGCATTAGCCATGCAGGCTGAAGATGAGGTTAATCAGTCAGATACGGTTTCTCAGTCGGATATTCAGGGAGTTGTTGAAGATGTAAAGGAGACGTCTCATAGGAGTCCTTCTGCAATCAGTGCCGAAGATATACATCCTGAGAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465602" ref_strand="+" ref_description="SGN-E465602 [cPRO-21-L19]">
      <seq>gaaattgggaaatgaaaatggcactcatgattctgacagtgtaagccttcagaaaagtgacttggacatagagcacaatgcttcagatagtgcaagagaccatctttttgtgaatgatgaacagtcaaaggaacaggctgatttaacagtaccagcagagcaggcacaaagtgaactgctaggatcatatgaaagcactgaatgtgataatgtggagcatcagactgcagctttgcttaaaggagtaaagatatctatttgtatgaacttgcttcatgctggaatgggttccgctgctgctatagaagcctttgaggcaaatcgcgtttctgaggaggaattcagaaactccgcaaaatccataattaacaatccaaatttatctgtccgaattcaaggaaactatttactatgggacaaagctgctcctatcgttctcgggatggctgcatacaatatggaattaccagttgactctactgatgtcatacccgtggagcaggacaagaacctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaataccatttataagagttaagacaatcgaacacactagcagtaattcatcaaatgaagaggtgtttgttgattctgaatcaatctcactgaacctgcctacagaacaaacagcatcaccacaatgaggaaatgaatctcctcgcaagcaacttgtgagaancaatgtcccttctactggtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12091" stop="13593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12391" g_stop="12632" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142">
            <donor d_prob="0.951" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12775" g_stop="13293" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="761" r_length="519" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E465602" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12391" e_stop="12632"/>
          <exon e_start="12775" e_stop="13293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAGGTACATAAACTGATTCAAGCACAAGAAAGAGTGCCTCCTGTATTTTTTTTAATTAAAAAAATTATAGTGTTTCATCTAGCTGGTCAATTTAATTAATTCTTCTTCTCACTATGTTCACATATTTTGTTAGTGATATCTGCAGGAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAA</genome_strand>
        <mrna_strand>GAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAAGCCTTCAGAAAAGTGACTTGGACATAGAGCACAATGCTTCAGATAGTGCAAGAGACCATCTTTTTGTGAATGATGAACAGTCAAAGGAACAGGCTGATTTAACAGTACCAGCAGAGCAGGCACAAAGTGAACTGCTAGGATCATATGAAAGCACTGAATGTGATAATGTGGAGCATCAGACTGCAGCTTTGCTTAAAG..............................................................................................................................................GAGTAAAGATATCTATTTGTATGAACTTGCTTCATGCTGGAATGGGTTCCGCTGCTGCTATAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGAATTCAGAAACTCCGCAAAATCCATAATTAACAATCCAAATTTATCTGTCCGAATTCAAGGAAACTATTTACTATGGGACAAAGCTGCTCCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCAGTTGACTCTACTGATGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATACCATTTATAAGAGTTAAGACAATCGAACACACTAGCAGTAATTCATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACTGAACCTGCCTACAGAACAAACAGCATCACCACAATGAGGAAATGAATCTCCTCGCAAGCAACTTGTGAGAANCAATGTCCCTTCTACTGGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435295" ref_strand="+" ref_description="SGN-E435295 [STM-61-G4]">
      <seq>gaaattgggaaatgaaaatggcactcatgattctgacagtgtaagccttcagaaaagtgacttggacatagagcacaatgcttcagatagtgcaagagaccatctttttgtgaatgatgaacagtcaaaggaacaggctgatttaacagtagcagcagagcaggcacaaagtgaactgctaggatcagatgaaagcactgaatgtgataatgtggagcatcagactgcagctttgcttaaaggagtagagatatctatttgtaggaacttgcttcatgctggaatgggttccgctgctgctagagaagcctttgaggcaaatcgcgtttctgaggaggaattcagaaactccgcaaaatccataattaacaatccaaatttagctgtccgaattcaaggaaactatttacaatgggacaaagctgctcctatcgttctcgggatggctgcatacaatatggaattaccagttgactctactgatgtcatacccgtggagcaggacaagaacctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaataccatttagaagagttaagacaatcgaacacactagcagtaattcatcagatgaagaggtgtttgttgattctgaatncatctcactgaaactgcctacagaacaacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12091" stop="13525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12391" g_stop="12632" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142">
            <donor d_prob="0.951" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12775" g_stop="13225" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="692" r_length="450" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E435295" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12391" e_stop="12632"/>
          <exon e_start="12775" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAGGTACATAAACTGATTCAAGCACAAGAAAGAGTGCCTCCTGTATTTTTTTTAATTAAAAAAATTATAGTGTTTCATCTAGCTGGTCAATTTAATTAATTCTTCTTCTCACTATGTTCACATATTTTGTTAGTGATATCTGCAGGAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATC</genome_strand>
        <mrna_strand>GAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAAGCCTTCAGAAAAGTGACTTGGACATAGAGCACAATGCTTCAGATAGTGCAAGAGACCATCTTTTTGTGAATGATGAACAGTCAAAGGAACAGGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCTAGGATCAGATGAAAGCACTGAATGTGATAATGTGGAGCATCAGACTGCAGCTTTGCTTAAAG..............................................................................................................................................GAGTAGAGATATCTATTTGTAGGAACTTGCTTCATGCTGGAATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGAATTCAGAAACTCCGCAAAATCCATAATTAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAACTATTTACAATGGGACAAAGCTGCTCCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCAGTTGACTCTACTGATGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATACCATTTAGAAGAGTTAAGACAATCGAACACACTAGCAGTAATTCATCAGATGAAGAGGTGTTTGTTGATTCTGAATNCATCTCACTGAAACTGCCTACAGAAC-AACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573462" ref_strand="+" ref_description="SGN-E573462 [32776]">
      <seq>tgaaaatggcactcatgattctgacagtgtaagccttcagaaaagtgacttggacatagagcacaatgcttcagatagtgcaagagaccatctttttgtgaatgatgaacagtcaaaggaacaggctgatttaacagtagcagcagagcaggcacaaagtgaactgcaaggatcagatgaaagcactgaatgtgataatgtggagcatcagactgcagctttgcttaaaggagtagagatatctatttgtaggaacttgcttcatgctggaatgggttccgctgctgctagagaagcctttgaggcaaatcgcgtttctgaggaggaattcagaaactccgcaaaatccataattaacaatccaaatttagctgtccgaattcaaggaaactatttacaatgggacaaagctgctcctatcgttctcgggatggctgcatacaatatggaattaccagttgactctactgatgtcatacccgtggagcaggacaagaacctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaataccatttagaagagttaagacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12103" stop="13435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12403" g_stop="12632" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142">
            <donor d_prob="0.951" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12775" g_stop="13135" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="591" r_length="361" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E573462" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12403" e_stop="12632"/>
          <exon e_start="12775" e_stop="13135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAGGTACATAAACTGATTCAAGCACAAGAAAGAGTGCCTCCTGTATTTTTTTTAATTAAAAAAATTATAGTGTTTCATCTAGCTGGTCAATTTAATTAATTCTTCTTCTCACTATGTTCACATATTTTGTTAGTGATATCTGCAGGAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAAT</genome_strand>
        <mrna_strand>TGAAAATGGCACTCATGATTCTGACAGTGTAAGCCTTCAGAAAAGTGACTTGGACATAGAGCACAATGCTTCAGATAGTGCAAGAGACCATCTTTTTGTGAATGATGAACAGTCAAAGGAACAGGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATCAGATGAAAGCACTGAATGTGATAATGTGGAGCATCAGACTGCAGCTTTGCTTAAAG..............................................................................................................................................GAGTAGAGATATCTATTTGTAGGAACTTGCTTCATGCTGGAATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGAATTCAGAAACTCCGCAAAATCCATAATTAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAACTATTTACAATGGGACAAAGCTGCTCCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCAGTTGACTCTACTGATGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATACCATTTAGAAGAGTTAAGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705251" ref_strand="+" ref_description="SGN-E705251 [FA26CD02]">
      <seq>ccatttaacagtagcagcagagcaggcacaaagtgaactgcaaggattcgatgaaagcaccgaacgtgataatgtggagcagcagactgcagctttgcttaaaggagtagagatatctctttgtaggcacttgcttcatgctgggatgggttccgctgctgctagagaagcctttgaggcaaatcgcgtttctgaggaggtattcagaaactccgcaaaatccatgataaacaatccaaatttagctgtccgaattcaaggaaattatttacaatgggacaaagctgcacctatcgttctcgggatggctgcgtacaatatggaattacctgttgactccactgacgtcatacccgtggagcaggacaagaacctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaatgccatttagaagagttaagacaatcgaacacactaccagtaatctatcaaatgaagaggtgtttgttgattctgaatcaatctcaccgaaccagcctacagaacaaacagcatcaccacaaggaggaaaggaatctcctcgcaagcaacttgtgagaacaaatgtcccttctactggtcaaattgaatctttaaaactgaaagagggtcagaatttggtgactttcattttttccactcgagtcctgggagaccaaaaggttgaagcccatatatatttgtggaagtggaatactcggattgtaatttctgatgttgatgggactattaccaagtctgatgttcttggtcagttcatgccgttggttggaaaggattggacccactccggaatcgctagacttttctgtgcaatcaaggaaaacggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12231" stop="14550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12529" g_stop="12632" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12775" g_stop="13370" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="700" r_length="596" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13447" g_stop="13520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="774" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14163" g_stop="14247" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="859" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E705251" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12529" e_stop="12632"/>
          <exon e_start="12775" e_stop="13370"/>
          <exon e_start="13447" e_stop="13520"/>
          <exon e_start="14163" e_stop="14247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAGGTACATAAACTGATTCAAGCACAAGAAAGAGTGCCTCCTGTATTTTTTTTAATTAAAAAAATTATAGTGTTTCATCTAGCTGGTCAATTTAATTAATTCTTCTTCTCACTATGTTCACATATTTTGTTAGTGATATCTGCAGGAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAGGTTTGTTGTGTTACTTGTGGCAAATTCATTAACTTCAGAAAAATGTAGTCTTTTTATTGTTTTGGTCTTAAAACAGGTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAAGTAAGCCTTTTTGATCATTATACCTCAAGCTGCAAAAAATTGTTAGCCTTTACATACTATCTAAGAGGTTGTCTCTTACCTGATGAGTCGCTTGCAAGATGAGTGGTGAAGCCAAGATTTCATTGAGGGGTTCAAAATATGACAAGTAAACACATGAAGAATCAAAGGAGGGTTCAAGATCTATTATATATTCATAAATTTCGTTTTTATAATTTTAAGCATGTATAAACACCGTATTTTTCCGCCGAACGTGACCTAACTGCTTCCGCCCCTGTGCAAGAACCTCTATCATGCTAGAAACTTAATAAATTAAAGCCAGTCCACTCTTCAGATTTTATAGGATAACTAGTTTCACATGTCCAAAATTCTCACCTTTAAGCTGATGTGAGAAACCAATATCTTTTTGTGAAGTTTTCTACTTTTTGATATACTTCTTGTATACCTGCATGTTTCTCCCTTCATTTAATAAATTTTAATACACAATGAAAAAAACTGATTTGAGAGCATAAAAGGATATTAAATAGAACTGTTTGTTGGAACATTTTCTCATTCTGGTATAGTCTTACACTACTATGTACCTAGTAGACCTGAATGAGGACATGCTCTCTAACGTAACTTAACAAGTGCATATTTTATGTCTAGGTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG</genome_strand>
        <mrna_strand>CCATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAG..............................................................................................................................................GAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCGTACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG............................................................................GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317549" ref_strand="+" ref_description="SGN-E317549 [cTOB-17-I7]">
      <seq>ctgctagagaagcctttgaggcaaatcgcgtttctgaggaggtattcagaaactccgcaaaatccatgataaacaatccaaatttagctgtccgaattcaaggaaattatttacaatgggacaaagctgcacctatcgttctcgggatggctgcatacaatatggaattacctgttgactccactgacgtcatacccgtggagcacgacaagaacctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaatgccatttagaagagttaagacaatcgaacacactaccagtaatctatcaaatgaagaggtgtttgttgattctgaatcaatctcaccgaaccagcctacagaacaaacagcatcaccacaaggaggaaaggaatctcctcgcaagcaacttgtgagaacaaatgtcccttctactggtcaaattgaatctttaaaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12529" stop="13612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12829" g_stop="13312" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E317549" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12829" e_stop="13312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAA</genome_strand>
        <mrna_strand>CTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCACGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317503" ref_strand="+" ref_description="SGN-E317503 [cTOB-17-I11]">
      <seq>ctgctagagaagcctttgaggcaaatcgcgtttctgaggaggtattcagaaactccgcaaaatccatgataaacaatccaaatttagctgtccgaattcaaggaaattatttacaatgggacaaagctgcacctatcgttctcgggatggctgcatacaatatggaattacctgttgactccactgacgtcatacccgtggagcaggacaagaacctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaatgccatttagaagagttaagacaatcgaacacactaccagtaatctatcaaatgaagaggtgtttgttgattctgaatcaatctcaccgaaccagcctacagaacaaacagcatcaccacaaggaggaaaggaatctcctcgcaagcaacttgtgagaacaaatgtcccttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12529" stop="13586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12829" g_stop="13286" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E317503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12829" e_stop="13286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACT</genome_strand>
        <mrna_strand>CTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738281" ref_strand="+" ref_description="SGN-E738281 [LC13AD04]">
      <seq>ctataacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaatgccatttagaagagttaagacaatcgaacacactaccagtaatctatcaaatgaagaggtgtttgttgattctgaatcaatctcaccgaaccagcctacagaacaaacagcatcaccacaaggaggaaaggaatctcctcgcaagcaacttgtgagaacaaatgtcccttctactggtcaaattgaatctttaaaactgaaagagggtcagaatttggtgactttcattttttccactcgagtcctgggagaccaaaaggttgaagcccatatatatttgtggaagtggaatactcggattgtaatttctgatgttgatgggactattaccaagtctgatgttcttggtcagttcatgccgttggttggaaaggattggacccactccggaatcgctagacttttctgtgcaatcaaggaaaacggatatcagctactctttctcagtgcacgagcaattgttcaagcttatctgaccaaaagttttctgttcaatctcaaacaggatgggaaatcattaccacctggacctgttgttatttcacctgatggtttatttccctcattgtacagagaagttataagaagagctcctcatgaattcaagattgcatgcttagaggacataaaagcactttttccaccagactataaccctttttatgcgggattcgggaatagggacactgatgagctcagttacaggaaaattggaattccaaaaggcaaaatttttataataaacccaaagggggaggtagctattaaccaccaaatcgacgtgaaatcctatacttcattacacactctagttaatgacatgttccctcctacatccatggttgagcaggaagattataacttatggaactactggaaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12744" stop="19021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13044" g_stop="13370" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="400" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14163" g_stop="14247" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="485" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14248" i_stop="15894" i_length="1647">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15895" g_stop="15981" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="572" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15982" i_stop="17513" i_length="1532">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17514" g_stop="17586" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="645" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17587" i_stop="17795" i_length="209">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17796" g_stop="17839" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="689" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17840" i_stop="18108" i_length="269">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18109" g_stop="18237" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="818" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18334" g_stop="18432" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="917" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18433" i_stop="18687" i_length="255">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18688" g_stop="18721" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="952" r_length="35" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E738281" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13044" e_stop="13370"/>
          <exon e_start="13447" e_stop="13520"/>
          <exon e_start="14163" e_stop="14247"/>
          <exon e_start="15895" e_stop="15981"/>
          <exon e_start="17514" e_stop="17586"/>
          <exon e_start="17796" e_stop="17839"/>
          <exon e_start="18109" e_stop="18237"/>
          <exon e_start="18334" e_stop="18432"/>
          <exon e_start="18688" e_stop="18721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAGGTTTGTTGTGTTACTTGTGGCAAATTCATTAACTTCAGAAAAATGTAGTCTTTTTATTGTTTTGGTCTTAAAACAGGTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAAGTAAGCCTTTTTGATCATTATACCTCAAGCTGCAAAAAATTGTTAGCCTTTACATACTATCTAAGAGGTTGTCTCTTACCTGATGAGTCGCTTGCAAGATGAGTGGTGAAGCCAAGATTTCATTGAGGGGTTCAAAATATGACAAGTAAACACATGAAGAATCAAAGGAGGGTTCAAGATCTATTATATATTCATAAATTTCGTTTTTATAATTTTAAGCATGTATAAACACCGTATTTTTCCGCCGAACGTGACCTAACTGCTTCCGCCCCTGTGCAAGAACCTCTATCATGCTAGAAACTTAATAAATTAAAGCCAGTCCACTCTTCAGATTTTATAGGATAACTAGTTTCACATGTCCAAAATTCTCACCTTTAAGCTGATGTGAGAAACCAATATCTTTTTGTGAAGTTTTCTACTTTTTGATATACTTCTTGTATACCTGCATGTTTCTCCCTTCATTTAATAAATTTTAATACACAATGAAAAAAACTGATTTGAGAGCATAAAAGGATATTAAATAGAACTGTTTGTTGGAACATTTTCTCATTCTGGTATAGTCTTACACTACTATGTACCTAGTAGACCTGAATGAGGACATGCTCTCTAACGTAACTTAACAAGTGCATATTTTATGTCTAGGTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAGGTATTCCTTTCTCTGTCCTATATTTGGACTTCTCTTCGTCTTTAAGTCATCATATCAACTAAGCTTCGAACCATTCTTATATTTGACAACTAATACCTTAACCATGGAAAACACTTTCCTAGACAAGTAGTGTGGCAACAAGTAGCATCAAGTACCACCAAGTGTATTCATTATTGTCATAACATAGTAATCCTGCATCTTTTTCTATTAATACATTTCTATTATTCATGTGGCAAGTCAACTGTTGTATTGCCTTTGTGATATATGATTCTGCATGAATGTAGATATCAACATATTTTGGGAATTCATGTCCTTGAACATGTTTGCTGACTTATTGTGGCTATAGATTATTTTATGCTGTTTTTCAGATAACTTGTGGCAAAGTGATTACCCTAGCATTTGATCTTTACCATACCTATGCTTAGTGATCAAAATATTTCATGAATTGGATTTGTTGATCATCTAAGCTAGTATTCGGAAAGTAAATTTATCCTGAATTGTTAGTTTAGTTAGGGTTACCTATGGAAAGATTGTCATTCATTGTTATGTGGAAAGGGTTTGGAGTGGGAATGTGGCAATTCAGGATTTGATGAGTCAGCTTGAGGTAGGGGTAAGGTGTGTGTACATTCTACCCTCCCAGACCCAACTTGTGGATTACACTGGGTATGCTGGTGTATGCTTCAGCACGAGAAAAATGTTGCAGGGTGGCTATGCCCATGACACTTAATGGGATTGATAAACACGTCAGCCAGAGATGAGCAGGAAACCTATTTAACGTATGTAGAGAGGAAGGTAAAACATTGATGGTATCATATAGAGTTTATCCATATAAAAAAATGGGGAAGAACTAAGGTTTTAGTAAGCAAGCATGGAAGAATTATAAGATAATTAGATAGAAGGTCCTGTGTTCAAGTTACCACAACTTTAGATGAAGTATGGCAGGCTAATCCACAGACTCACCCGTACAGGATGACAAGACCCTTATATAAGATATTTGCTTAGGTGAGATCTGCAATGTTACATACCTCACGGCACAGTATTTGATTCAACATATTGGACACTGTACAGTGTGCAGAAGTTGGGTCAAAGAGTAATATATATATAGTATGAACTCTTGTATCTCCTTTCCCTCTTTATTCTTCGTTTGTTGCTGGGTGAGAAGAGGGGGGAGTAAGAGCCATAAGAAATTATGGAACATGATACCCTCTTGTATATGGTGGACTATTTGGAGAGAAAGAAACCAGAGGTGTATGGAAGATACTGCGGAATCAGTACAAAAGATCAAATGGCGTTGTATGAAGACCTTCTGTTTTTTGGTGTAATGAGGAGGTTATAGAGGATGCTGGACAGATTTTAAACTTTTTCTCTTCTTTACAAGTTTAGTAGCAATTTCTTGAGTTTTTTTTTTTTGGTCACTGATGTAAATCTTTTTGATGGTTGCCAGCATATCCTCATTGCTGAGGAATATAACTTTACTTTATCAACAAAGAAAATTCTTCATTTGTTAATTTTTTGTAGATATGAAGTAGTATGATCGACTGACACGAAGCTGGTTTAATGTTTATGATCTCTCACTTCCATATTCATTGATGTTGAACTATTTTTCTCCATTATTTTATTGATGGATGAGCTTTCTCTTGATTGCAGGAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAGGTGTTACACGCCATAGGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGAATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAATTATATGTTGACCGTTAACTACTCCAAACTTCCTCCTTATCAGGCAGGCTTGGGACCTGCTATGTGTAGCTTGAGTTTTAAGGTTGCTATGTCTATTAAAAAGAAAAATAGAAGAGACAACATCAGCACATCTCCCTTAGCTGTTTTTGTGAATCACAACAGCTCATTTTTGTGTATTTCTTTAGTCTTGAGAAATTGAGCAACTTGAAGGTGCAACCAAAAATCTAGAGAACTATCAAAAATAACAGCCTTGTTGTCAACTTGCCTTCCTCACTATTTAAATCTAGTTTTTATTCTTATTTAAGAAGTTCCCAGATTTGAAGTTCTGGCTTTATTTCCTGCGTGGGTGTAGCATACTGCTCCAATAAACTCATCAAAGAAAGAGAGGCTCTAATAGAACTGTTGATTGGTTTGTCAATCTACTAACAGAAAATCAAATAATATGACAGAATTTGCTCAAAACTCACCAACTGATTGACTACTGCCATATTTACACGTTTTGAGTACTTGTGGTGGTGGAACTGAGATTTAGCCTTTACTAGCCTTTCTTTTCATTTTTTCTCTCCATGTTTTCCTGTTCTCAGACCTTACAATTGTTTTTTCTTTCTTTTGTGGGGAAAGGAGTTTCTGAGGATGCATTTTATCTAACACTACTGTGGCTCAACTGTATAGACCATCTTAGCAAATCTTGGATCTGGCCTCTGTTTGCTTGTCCTTTCTTGTAGATTTCTGATTGTGCAACAAATTTCACTAACCTGAAATGTGTAAACGATCTGTAGGATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAGGTTAGTACAAATTTGCTAAAAGTCCTTTTTTGGCTTTAGTCTTTGTCAAAGTGCATTATGTACGCATATGCCAATTTCACATGTTTCTTGGTGTTTAGTTTCACGAGAGTTACCCGAAATCTTCAGCTCTTTTGCTGATATGATAAAGAAGGAATTGCCTATATTTGATCTCTAACAAGATTTACCTTTTCTCTTCTATGTCATGGCAGTTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAGGTTTGTATTCAAAATAGTGATGGTTCTTTCAGGTGTCTTTTAGTATGCATGAATGTATGAAGCGGATATTACCAAGTAGAGTATGAAGTGGATATTACCAAGTAGAGATTTTACATCTTATCTGCCTAATCCTGATAGTTCTAAAAAAAATTAATACATATACCTAATCCAGATCTTATGCTGCATACCAAATGACGCCCTCTTGGATTCGATCCTTTTGTATCTCTCCAGTGGTTTGCCACCTTCTAATGTATTCTTCTACATTTCAGGACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAGGTTTGAACTCTTTCCTTTGCTTTATTGTTGAAAAACTTTATGTACAGTTTGTCAAGTTTTACACTCTTGTCTAACATGTTGAAATTGGACTTACAGGGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGG-AAAATGC</genome_strand>
        <mrna_strand>CT-ATAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG............................................................................GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAG.................................................................................................................................................................................................................TTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAG.............................................................................................................................................................................................................................................................................GACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAG................................................................................................GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAG...............................................................................................................................................................................................................................................................GAAGATTATAACTTATGGAACTACTGGAAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739924" ref_strand="+" ref_description="SGN-E739924 [LC19BE02]">
      <seq>ctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaatgccatttagaagagttaagacaatcgaacacactaccagtaatctatcaaatgaagaggtgtttgttgattctgaatcaatctcaccgaaccagcctacagaacaaacagcatcaccacaaggaggaaaggaatctcctcgcaagcaacttgtgagaacaaatgtcccttctactggtcaaattgaatctttaaaactgaaagagggtcagaatttggtgactttcattttttccactcgagtcctgggagaccaaaaggttgaagcccatatatatttgtggaagtggaatactcggattgtaatttctgatgttgatgggactattaccaagtctgatgttcttggtcagttcatgccgttggttggaaaggattggacccactccggaatcgctagacttttctgtgcaatcaaggaaaacggatatcagctactctttctcagtgcacgagcaattgttcaagcttatctgaccaaaagttttctgttcaatctcaaacaggatgggaaatcattaccacctggacctgttgttatttcacctgatggtttatttccctcattgtacagagaagttataagaagagctcctcatgaattcaagattgcatgcttagaggacataaaagcactttttccaccagactataaccctttttatgcgggattcgggaatagggacactgatgagctcagttacaggaaaattggaattccaaaaggcaaaatttttataataaacccaaagggggaggtagctattaaccaccaaatcgacgtgaaatcctatacttcattacacactctagttaatgacatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12744" stop="18709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13044" g_stop="13370" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="401" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14163" g_stop="14247" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="486" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14248" i_stop="15894" i_length="1647">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15895" g_stop="15981" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="573" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15982" i_stop="17513" i_length="1532">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17514" g_stop="17586" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="646" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17587" i_stop="17795" i_length="209">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17796" g_stop="17839" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="690" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17840" i_stop="18108" i_length="269">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18109" g_stop="18237" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="819" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18334" g_stop="18409" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="895" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E739924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13044" e_stop="13370"/>
          <exon e_start="13447" e_stop="13520"/>
          <exon e_start="14163" e_stop="14247"/>
          <exon e_start="15895" e_stop="15981"/>
          <exon e_start="17514" e_stop="17586"/>
          <exon e_start="17796" e_stop="17839"/>
          <exon e_start="18109" e_stop="18237"/>
          <exon e_start="18334" e_stop="18409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAGGTTTGTTGTGTTACTTGTGGCAAATTCATTAACTTCAGAAAAATGTAGTCTTTTTATTGTTTTGGTCTTAAAACAGGTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAAGTAAGCCTTTTTGATCATTATACCTCAAGCTGCAAAAAATTGTTAGCCTTTACATACTATCTAAGAGGTTGTCTCTTACCTGATGAGTCGCTTGCAAGATGAGTGGTGAAGCCAAGATTTCATTGAGGGGTTCAAAATATGACAAGTAAACACATGAAGAATCAAAGGAGGGTTCAAGATCTATTATATATTCATAAATTTCGTTTTTATAATTTTAAGCATGTATAAACACCGTATTTTTCCGCCGAACGTGACCTAACTGCTTCCGCCCCTGTGCAAGAACCTCTATCATGCTAGAAACTTAATAAATTAAAGCCAGTCCACTCTTCAGATTTTATAGGATAACTAGTTTCACATGTCCAAAATTCTCACCTTTAAGCTGATGTGAGAAACCAATATCTTTTTGTGAAGTTTTCTACTTTTTGATATACTTCTTGTATACCTGCATGTTTCTCCCTTCATTTAATAAATTTTAATACACAATGAAAAAAACTGATTTGAGAGCATAAAAGGATATTAAATAGAACTGTTTGTTGGAACATTTTCTCATTCTGGTATAGTCTTACACTACTATGTACCTAGTAGACCTGAATGAGGACATGCTCTCTAACGTAACTTAACAAGTGCATATTTTATGTCTAGGTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAGGTATTCCTTTCTCTGTCCTATATTTGGACTTCTCTTCGTCTTTAAGTCATCATATCAACTAAGCTTCGAACCATTCTTATATTTGACAACTAATACCTTAACCATGGAAAACACTTTCCTAGACAAGTAGTGTGGCAACAAGTAGCATCAAGTACCACCAAGTGTATTCATTATTGTCATAACATAGTAATCCTGCATCTTTTTCTATTAATACATTTCTATTATTCATGTGGCAAGTCAACTGTTGTATTGCCTTTGTGATATATGATTCTGCATGAATGTAGATATCAACATATTTTGGGAATTCATGTCCTTGAACATGTTTGCTGACTTATTGTGGCTATAGATTATTTTATGCTGTTTTTCAGATAACTTGTGGCAAAGTGATTACCCTAGCATTTGATCTTTACCATACCTATGCTTAGTGATCAAAATATTTCATGAATTGGATTTGTTGATCATCTAAGCTAGTATTCGGAAAGTAAATTTATCCTGAATTGTTAGTTTAGTTAGGGTTACCTATGGAAAGATTGTCATTCATTGTTATGTGGAAAGGGTTTGGAGTGGGAATGTGGCAATTCAGGATTTGATGAGTCAGCTTGAGGTAGGGGTAAGGTGTGTGTACATTCTACCCTCCCAGACCCAACTTGTGGATTACACTGGGTATGCTGGTGTATGCTTCAGCACGAGAAAAATGTTGCAGGGTGGCTATGCCCATGACACTTAATGGGATTGATAAACACGTCAGCCAGAGATGAGCAGGAAACCTATTTAACGTATGTAGAGAGGAAGGTAAAACATTGATGGTATCATATAGAGTTTATCCATATAAAAAAATGGGGAAGAACTAAGGTTTTAGTAAGCAAGCATGGAAGAATTATAAGATAATTAGATAGAAGGTCCTGTGTTCAAGTTACCACAACTTTAGATGAAGTATGGCAGGCTAATCCACAGACTCACCCGTACAGGATGACAAGACCCTTATATAAGATATTTGCTTAGGTGAGATCTGCAATGTTACATACCTCACGGCACAGTATTTGATTCAACATATTGGACACTGTACAGTGTGCAGAAGTTGGGTCAAAGAGTAATATATATATAGTATGAACTCTTGTATCTCCTTTCCCTCTTTATTCTTCGTTTGTTGCTGGGTGAGAAGAGGGGGGAGTAAGAGCCATAAGAAATTATGGAACATGATACCCTCTTGTATATGGTGGACTATTTGGAGAGAAAGAAACCAGAGGTGTATGGAAGATACTGCGGAATCAGTACAAAAGATCAAATGGCGTTGTATGAAGACCTTCTGTTTTTTGGTGTAATGAGGAGGTTATAGAGGATGCTGGACAGATTTTAAACTTTTTCTCTTCTTTACAAGTTTAGTAGCAATTTCTTGAGTTTTTTTTTTTTGGTCACTGATGTAAATCTTTTTGATGGTTGCCAGCATATCCTCATTGCTGAGGAATATAACTTTACTTTATCAACAAAGAAAATTCTTCATTTGTTAATTTTTTGTAGATATGAAGTAGTATGATCGACTGACACGAAGCTGGTTTAATGTTTATGATCTCTCACTTCCATATTCATTGATGTTGAACTATTTTTCTCCATTATTTTATTGATGGATGAGCTTTCTCTTGATTGCAGGAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAGGTGTTACACGCCATAGGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGAATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAATTATATGTTGACCGTTAACTACTCCAAACTTCCTCCTTATCAGGCAGGCTTGGGACCTGCTATGTGTAGCTTGAGTTTTAAGGTTGCTATGTCTATTAAAAAGAAAAATAGAAGAGACAACATCAGCACATCTCCCTTAGCTGTTTTTGTGAATCACAACAGCTCATTTTTGTGTATTTCTTTAGTCTTGAGAAATTGAGCAACTTGAAGGTGCAACCAAAAATCTAGAGAACTATCAAAAATAACAGCCTTGTTGTCAACTTGCCTTCCTCACTATTTAAATCTAGTTTTTATTCTTATTTAAGAAGTTCCCAGATTTGAAGTTCTGGCTTTATTTCCTGCGTGGGTGTAGCATACTGCTCCAATAAACTCATCAAAGAAAGAGAGGCTCTAATAGAACTGTTGATTGGTTTGTCAATCTACTAACAGAAAATCAAATAATATGACAGAATTTGCTCAAAACTCACCAACTGATTGACTACTGCCATATTTACACGTTTTGAGTACTTGTGGTGGTGGAACTGAGATTTAGCCTTTACTAGCCTTTCTTTTCATTTTTTCTCTCCATGTTTTCCTGTTCTCAGACCTTACAATTGTTTTTTCTTTCTTTTGTGGGGAAAGGAGTTTCTGAGGATGCATTTTATCTAACACTACTGTGGCTCAACTGTATAGACCATCTTAGCAAATCTTGGATCTGGCCTCTGTTTGCTTGTCCTTTCTTGTAGATTTCTGATTGTGCAACAAATTTCACTAACCTGAAATGTGTAAACGATCTGTAGGATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAGGTTAGTACAAATTTGCTAAAAGTCCTTTTTTGGCTTTAGTCTTTGTCAAAGTGCATTATGTACGCATATGCCAATTTCACATGTTTCTTGGTGTTTAGTTTCACGAGAGTTACCCGAAATCTTCAGCTCTTTTGCTGATATGATAAAGAAGGAATTGCCTATATTTGATCTCTAACAAGATTTACCTTTTCTCTTCTATGTCATGGCAGTTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAGGTTTGTATTCAAAATAGTGATGGTTCTTTCAGGTGTCTTTTAGTATGCATGAATGTATGAAGCGGATATTACCAAGTAGAGTATGAAGTGGATATTACCAAGTAGAGATTTTACATCTTATCTGCCTAATCCTGATAGTTCTAAAAAAAATTAATACATATACCTAATCCAGATCTTATGCTGCATACCAAATGACGCCCTCTTGGATTCGATCCTTTTGTATCTCTCCAGTGGTTTGCCACCTTCTAATGTATTCTTCTACATTTCAGGACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAGGTTTGAACTCTTTCCTTTGCTTTATTGTTGAAAAACTTTATGTACAGTTTGTCAAGTTTTACACTCTTGTCTAACATGTTGAAATTGGACTTACAGGGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCC</genome_strand>
        <mrna_strand>CTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG............................................................................GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAG.................................................................................................................................................................................................................TTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAG.............................................................................................................................................................................................................................................................................GACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAG................................................................................................GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698164" ref_strand="+" ref_description="SGN-E698164 [FA05BH03]">
      <seq>cccttatttagaagagttaagaccatccaacacactaccagtaatctatcaaatgaagaggtgtttgttgattctgaatcaatctcaccgaaccagcctacagaacaaacagcatcaccacaaggaggaaaggaatctcctcgcaagcaacttgtgagaacaaatgtcccttctactggtcaaattgaatctttaaaactgaaagagggtcagaatttggtgactttcattttttccactcgagtcctgggagaccaaaaggttgaagcccatatatatttgtggaagtggaatactcggattgtaatttctgatgttgatgggactattaccaagtctgatgttcttggacagttcatgccgctggttggaaaggattggacccactccggaatcgctagacttttctgtgcaatcaaggaaaacggatatcagctactctttctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12815" stop="16223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13110" g_stop="13370" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13447" g_stop="13520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="335" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14163" g_stop="14247" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="420" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14248" i_stop="15894" i_length="1647">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15895" g_stop="15923" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="449" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E698164" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13110" e_stop="13370"/>
          <exon e_start="13447" e_stop="13520"/>
          <exon e_start="14163" e_stop="14247"/>
          <exon e_start="15895" e_stop="15923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAGGTTTGTTGTGTTACTTGTGGCAAATTCATTAACTTCAGAAAAATGTAGTCTTTTTATTGTTTTGGTCTTAAAACAGGTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAAGTAAGCCTTTTTGATCATTATACCTCAAGCTGCAAAAAATTGTTAGCCTTTACATACTATCTAAGAGGTTGTCTCTTACCTGATGAGTCGCTTGCAAGATGAGTGGTGAAGCCAAGATTTCATTGAGGGGTTCAAAATATGACAAGTAAACACATGAAGAATCAAAGGAGGGTTCAAGATCTATTATATATTCATAAATTTCGTTTTTATAATTTTAAGCATGTATAAACACCGTATTTTTCCGCCGAACGTGACCTAACTGCTTCCGCCCCTGTGCAAGAACCTCTATCATGCTAGAAACTTAATAAATTAAAGCCAGTCCACTCTTCAGATTTTATAGGATAACTAGTTTCACATGTCCAAAATTCTCACCTTTAAGCTGATGTGAGAAACCAATATCTTTTTGTGAAGTTTTCTACTTTTTGATATACTTCTTGTATACCTGCATGTTTCTCCCTTCATTTAATAAATTTTAATACACAATGAAAAAAACTGATTTGAGAGCATAAAAGGATATTAAATAGAACTGTTTGTTGGAACATTTTCTCATTCTGGTATAGTCTTACACTACTATGTACCTAGTAGACCTGAATGAGGACATGCTCTCTAACGTAACTTAACAAGTGCATATTTTATGTCTAGGTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAGGTATTCCTTTCTCTGTCCTATATTTGGACTTCTCTTCGTCTTTAAGTCATCATATCAACTAAGCTTCGAACCATTCTTATATTTGACAACTAATACCTTAACCATGGAAAACACTTTCCTAGACAAGTAGTGTGGCAACAAGTAGCATCAAGTACCACCAAGTGTATTCATTATTGTCATAACATAGTAATCCTGCATCTTTTTCTATTAATACATTTCTATTATTCATGTGGCAAGTCAACTGTTGTATTGCCTTTGTGATATATGATTCTGCATGAATGTAGATATCAACATATTTTGGGAATTCATGTCCTTGAACATGTTTGCTGACTTATTGTGGCTATAGATTATTTTATGCTGTTTTTCAGATAACTTGTGGCAAAGTGATTACCCTAGCATTTGATCTTTACCATACCTATGCTTAGTGATCAAAATATTTCATGAATTGGATTTGTTGATCATCTAAGCTAGTATTCGGAAAGTAAATTTATCCTGAATTGTTAGTTTAGTTAGGGTTACCTATGGAAAGATTGTCATTCATTGTTATGTGGAAAGGGTTTGGAGTGGGAATGTGGCAATTCAGGATTTGATGAGTCAGCTTGAGGTAGGGGTAAGGTGTGTGTACATTCTACCCTCCCAGACCCAACTTGTGGATTACACTGGGTATGCTGGTGTATGCTTCAGCACGAGAAAAATGTTGCAGGGTGGCTATGCCCATGACACTTAATGGGATTGATAAACACGTCAGCCAGAGATGAGCAGGAAACCTATTTAACGTATGTAGAGAGGAAGGTAAAACATTGATGGTATCATATAGAGTTTATCCATATAAAAAAATGGGGAAGAACTAAGGTTTTAGTAAGCAAGCATGGAAGAATTATAAGATAATTAGATAGAAGGTCCTGTGTTCAAGTTACCACAACTTTAGATGAAGTATGGCAGGCTAATCCACAGACTCACCCGTACAGGATGACAAGACCCTTATATAAGATATTTGCTTAGGTGAGATCTGCAATGTTACATACCTCACGGCACAGTATTTGATTCAACATATTGGACACTGTACAGTGTGCAGAAGTTGGGTCAAAGAGTAATATATATATAGTATGAACTCTTGTATCTCCTTTCCCTCTTTATTCTTCGTTTGTTGCTGGGTGAGAAGAGGGGGGAGTAAGAGCCATAAGAAATTATGGAACATGATACCCTCTTGTATATGGTGGACTATTTGGAGAGAAAGAAACCAGAGGTGTATGGAAGATACTGCGGAATCAGTACAAAAGATCAAATGGCGTTGTATGAAGACCTTCTGTTTTTTGGTGTAATGAGGAGGTTATAGAGGATGCTGGACAGATTTTAAACTTTTTCTCTTCTTTACAAGTTTAGTAGCAATTTCTTGAGTTTTTTTTTTTTGGTCACTGATGTAAATCTTTTTGATGGTTGCCAGCATATCCTCATTGCTGAGGAATATAACTTTACTTTATCAACAAAGAAAATTCTTCATTTGTTAATTTTTTGTAGATATGAAGTAGTATGATCGACTGACACGAAGCTGGTTTAATGTTTATGATCTCTCACTTCCATATTCATTGATGTTGAACTATTTTTCTCCATTATTTTATTGATGGATGAGCTTTCTCTTGATTGCAGGAAAACGGATATCAGCTACTCTTTCTCAG</genome_strand>
        <mrna_strand>CCCTTATTTAGAAGAGTTAAGACCATCCAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG............................................................................GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATGTTCTTGGACAGTTCATGCCGCTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGGATATCAGCTACTCTTTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542386" ref_strand="+" ref_description="SGN-E542386 [TUS-63-K16]">
      <seq>aaagttttctgttcaatctcaaacaggtaatcataattcagtttacatgaaataccgatgacactagtttttagtttcctaaaagatgcagaatatttatttgaatctcaagggagcatgtcagttggattttctgttacatgtaggaccatttctcgattcatatgtttctgaagggactgtcatatgtacggctgtaaattgtttggtttaaaccacgagaaatgaccaagccaaaaatcttggtctgtttggtactgctttcttgtgtttttttaaataaaaattatgtttggtttctgtttgttttgattctctctgcaggggtttctgttttccaacgcggtttcctttttctttcctttttaatttagaaaaagagaacactgaaattagggatatgcatagtttatccaggtatcagtttccttcacttcccccctcactccatctctgtctctcacttcttctccacacttcaaggcgagactagaacatgatcaaatgaacaccctagaaatgtaggtgaaacattgataatctaagatctaaaaaccgatgttattgcgaatcatatacaaaatcttttctttttccagtcttagcaaacatactacctcagaagggcttcaagaagctttttccaaatttggtgaagtgttacacgccatangctgtttatccctggctatgcatgaaacttcgaaacagtgatttttttcattggattgatagttgccatatcagtcggcatctatcaactaatcatctatctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="15656" stop="17035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15956" g_stop="16735" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E542386" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15956" e_stop="16735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAGGTGTTACACGCCATAGGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGAATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAAT</genome_strand>
        <mrna_strand>AAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAAGTGTTACACGCCATANGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGGATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548706" ref_strand="+" ref_description="SGN-E548706 [TUS-63-K20]">
      <seq>aaagttttctgttacatctcaaacatgtaatcataattcagtttacatgaaataccgatgacactggtttttagtttcctaaaagatgcacaatatttatctgaatctcaagggagcatgtcacttggattttctgttacatgtacgaccatttctcgattcatatgtttctgaagggactgtcatatgtacggctgtaaatcgtttggtttaatccacgagaaatgaccaacccaaaaatcttggtctgtttggtactgctttcttgtgtgtttttaaatgaaaattatgtttgagtgccgtttgttcttgattctctctgcaggggtttctgttttccaacgcggtttcctttttctttcctttgtaatttacaaaaagagaacactgacattagggatatgcattgcttatccaggtatcaatttccttcacttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="15656" stop="16696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15956" g_stop="16396" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E548706" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15956" e_stop="16396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTT-TTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCC</genome_strand>
        <mrna_strand>AAAGTTTTCTGTTACATCTCAAACATGTAATCATAATTCAGTTTACATGAAATACCGATGACACTGGTTTTTAGTTTCCTAAAAGATGCACAATATTTATCTGAATCTCAAGGGAGCATGTCACTTGGATTTTCTGTTACATGTACGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATCGTTTGGTTTAATCCACGAGAAATGACCAACCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTGTTTTTAAATGAAAATTATGTTTGAGTGCCGTTTGTTCTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTGTAATTTACAAAAAGAGAACACTGACATTAGGGATATGCATTGCTTATCCAGGTATCAATTTCCTTCACTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302155" ref_strand="+" ref_description="SGN-E302155 [cLEW-19-B12]">
      <seq>aagttttctgttcaatctcaaacaggtaatcataattcagtttacatgaaataccgatgacactagtttttagtttcctaaaagatgcagaatatttatttgaatctcaagggagcatgtcagttggattttctgttacatgtaggaccatttctcgattcatatgtttctgaagggactgtcatatgtacggctgtaaattgtttggtttaaaccacgagaaatgaccaagccaaaaatcttggtctgtttggtactgctttcttgtgtttttttaaataaaaattatgtttggtttctgtttgttttgattctctctgcaggggtttctgttttccaacgcggtttcctttttctttcctttttaatttagaaaaagagaacactgaaattagggatatgcatagtttatccaggtatcagtttccttcacttcccccctcactccatctctgtctctcacttcttctccacacttcaaggcgagactagaacatgatcaaatgaacaccctagaaatgtaggtgaaacattgataatctaagatctaaaaaccgatgttattgcgaatcatatacaaaatcttttctttttccagtcttagcaaacatactacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="15657" stop="16876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15957" g_stop="16576" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E302155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15957" e_stop="16576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCA</genome_strand>
        <mrna_strand>AAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338032" ref_strand="+" ref_description="SGN-E338032 [cTOE-14-B20]">
      <seq>tcaaacaggatgggaaatcattaccacctggacctgttgttatttcacctgatggtttatttccctcattgtacagagaagttataagaagagctcctcatgaattcaagattgcatgcttagaggacataaaagcactttttccaccagactataaccctttttatgcgggattcgggaatagggacactgatgagctcagttacaggaaaattggaattccaaaaggcaaaatttttataataaacccaaagggggaggtagctattaaccaccaaatcgacgtgaaatcctatacttcattacacactctagttaatgacatgttccctcctacatccatggttgagcaggaagattataacttatggaactactggaaaatgcccctggcagacgtcgataacttgtagagatttcttcccctcgtaccgatggatccaccttttttgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="17212" stop="19092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17514" g_stop="17586" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="81" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17587" i_stop="17795" i_length="209">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17796" g_stop="17839" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="125" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17840" i_stop="18108" i_length="269">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18109" g_stop="18237" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="254" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18334" g_stop="18432" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="353" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18433" i_stop="18687" i_length="255">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18688" g_stop="18792" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="458" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E338032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17514" e_stop="17586"/>
          <exon e_start="17796" e_stop="17839"/>
          <exon e_start="18109" e_stop="18237"/>
          <exon e_start="18334" e_stop="18432"/>
          <exon e_start="18688" e_stop="18792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAGGTTAGTACAAATTTGCTAAAAGTCCTTTTTTGGCTTTAGTCTTTGTCAAAGTGCATTATGTACGCATATGCCAATTTCACATGTTTCTTGGTGTTTAGTTTCACGAGAGTTACCCGAAATCTTCAGCTCTTTTGCTGATATGATAAAGAAGGAATTGCCTATATTTGATCTCTAACAAGATTTACCTTTTCTCTTCTATGTCATGGCAGTTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAGGTTTGTATTCAAAATAGTGATGGTTCTTTCAGGTGTCTTTTAGTATGCATGAATGTATGAAGCGGATATTACCAAGTAGAGTATGAAGTGGATATTACCAAGTAGAGATTTTACATCTTATCTGCCTAATCCTGATAGTTCTAAAAAAAATTAATACATATACCTAATCCAGATCTTATGCTGCATACCAAATGACGCCCTCTTGGATTCGATCCTTTTGTATCTCTCCAGTGGTTTGCCACCTTCTAATGTATTCTTCTACATTTCAGGACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAGGTTTGAACTCTTTCCTTTGCTTTATTGTTGAAAAACTTTATGTACAGTTTGTCAAGTTTTACACTCTTGTCTAACATGTTGAAATTGGACTTACAGGGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATC</genome_strand>
        <mrna_strand>GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAG.................................................................................................................................................................................................................TTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAG.............................................................................................................................................................................................................................................................................GACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAG................................................................................................GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAG...............................................................................................................................................................................................................................................................GAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218387" ref_strand="+" ref_description="SGN-E218387 [cLEL-18-J11](-)">
      <seq>ttccaaaaggcaaaatttttataataaacccaaaggggaggtagctattaaccaccaaatcgacgtgaaatcctatacttcattacacactctagttaatgacatgttccctcctacatccatggttgagcaggaagattataacttatggaactactggaaaatgcccctggcagacgtcgataacttgtagagatttcttcccctcgtaccgatggatccaccttttttgttgatctgagaagtcgaaaagcttagccggtatatgtataaccaactacctgcagtttcttttgtaggagagctgccattcttctttgtttctattattaaggtgtataaaattcagctatgtaggttctcattacattgtactcaaaaaggcataaagttcttgctcatgaataaaattttactttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="17903" stop="19276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18203" g_stop="18237" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18334" g_stop="18432" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="133" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18433" i_stop="18687" i_length="255">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18688" g_stop="18975" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="421" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="438"/>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E218387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18203" e_stop="18237"/>
          <exon e_start="18334" e_stop="18432"/>
          <exon e_start="18688" e_stop="18975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAAGGCAAAATTTTTATAATAAACCCAAAGGTTTGAACTCTTTCCTTTGCTTTATTGTTGAAAAACTTTATGTACAGTTTGTCAAGTTTTACACTCTTGTCTAACATGTTGAAATTGGACTTACAGGGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</genome_strand>
        <mrna_strand>TTCCAAAAGGCAAAATTTTTATAATAAACCCAAA-................................................................................................GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAG...............................................................................................................................................................................................................................................................GAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236958" ref_strand="+" ref_description="SGN-E236958 [cLEL-7-I6](-)">
      <seq>ttttataataaacccaaagggggaggtagctattaaccaccaaatcgacgtgaaatcctatacttcattacacactctagttaatgacatgttccctcctacatccatggttgagcaggaagattataacttatggaactactggaaaatgcccctggcagacgtcgataacttgtagagatttcttcccctcgtaccgatggatccaccttttttgttgatctgagaagtcgaaaagcttagccggtatatgtataaccaactacctgcagtttcttttgtaggagagctgccattcttctttgtttctattattaaggtgtataaaattcagctatgtaggttctcattacattgtactcaaaaaggcataaagttcttgctcatgaataaaattttactttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="17919" stop="19276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18219" g_stop="18237" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18334" g_stop="18432" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="118" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18433" i_stop="18687" i_length="255">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18688" g_stop="18975" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="406" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="423"/>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E236958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18219" e_stop="18237"/>
          <exon e_start="18334" e_stop="18432"/>
          <exon e_start="18688" e_stop="18975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAATAAACCCAAAGGTTTGAACTCTTTCCTTTGCTTTATTGTTGAAAAACTTTATGTACAGTTTGTCAAGTTTTACACTCTTGTCTAACATGTTGAAATTGGACTTACAGGGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</genome_strand>
        <mrna_strand>TTTTATAATAAACCCAAAG................................................................................................GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAG...............................................................................................................................................................................................................................................................GAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542383" ref_strand="+" ref_description="SGN-E542383 [TUS-63-K16](-)">
      <seq>agttaatgacatgttccctcctacatccatggttgagcaggttagtgctcgatgactctcgtttttaatatctcatctttgtttgttctaaagtaagttattagcatagacaatctcatttagagactcgaaagcatctggttagacatgcatagtcattcttttctgtttgcacgcgttatgcaaagaaccaacttttcattcactggttatctttgagcttcaactcttctatacagtctttcaacgggggccatctccatgacattgttctggattttcattgtaaatgcaggaagattataacttatggaactactggaaaatgcccctggcagacgtcgataacttgtagagatttcttcccctcgtaccgatggatccaccttttttgttgatctgagaagtcgaaaagcttagccggtatatgtataaccaactacctgcagtttcttttgtaggagagctgccattcttctttgtttctattattaaggtgtataaaattcagctatgtaggttctcattacattgtactcaaaaaggcataaagttcttgctcatgaataaaatttactttctattctctggaaaaaaaaaaaaaaaaaaaagaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="18093" stop="58101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18393" g_stop="18988" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18989" i_stop="19765" i_length="777">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19766" g_stop="19808" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="636" r_length="42" r_score="0.721"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E542383" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18393" e_stop="18988"/>
          <exon e_start="19766" e_stop="19808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCTATTTCTCTTGAAAGTTCATTTGCTGGTCTTCTCAAAAGTTCTAAAGTGTATTCTTTTCTAATTACTCATAGTTCATGCTCCTCTAGTTCGTTTGTAATTGAAAAATAGTCATTATCGCAGAGTTTTAGTAGCTTAAAATGCATGTAGGGAGCAGTTATGTCATACACGCGAAAAGATCAATATTGATGCGTTCATTTATTATCTCAATCTATTTCAGTTCACCTCGGTACCTCGATTTCGACTCATGCAATTTAAGAGGGTTTTTTTTTTTTTTTGCAAATAGCCACTATAATAAACTTGATTGTGTTTTATAACTATAATTTGCATATTTGCAGGCTACAACTACAGTATTAGCATGTACATTTATAAAATTCAGTATTTTTTTTGAATTTACGAATTCATACAATTACAAAAATCAAAAATATAAATAAAAGTTACACAAATTATATTGTTTTAGTTTTGAATTATACAAATAAAATTTTCAAATGTGATATTTTTCATATAGGCATAATAAAGAGATCTCTATATTAGTTTTTTTCTAAAAAAAATGAATAAAATAATTAAAACTTAGCAAATTTTTATTTGTATTTTGACTAGTTAGATGTCTTGTTCCTAATTCGCATAAATATAACTCAATTTGCTTTTTATTATTTTTTCATATTATGTTATATTTTAGTATATGTTAATATCTCAATATATACTGTCTCTAAATTCGAACTTTATATACTTGTCTATTGTTCATTATATTTCTTACATGTTTTTTTTCGATCGAGCTCGGAGTTGTTTAGTATAAAAAAAAAAAAAAAGGAAAAAGAAAGGAATAGAGAAGGCGC</genome_strand>
        <mrna_strand>AGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAA-TTTACTTTCTA-TTCTCTGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAGAAAAAAAAAACTCGAG-GGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347249" ref_strand="+" ref_description="SGN-E347249 [cTOF-25-N21]">
      <seq>ttgattcttgcaacataaccccatcacaaatggttcaaaaacttcttcaaacatcaaagattcaatcttttcaacaacaagaagagagattcaacattagtactaacactagcaccccatttgagtcttgcaacatttctccatcagagtcttgtagagtgagttgtgaacttaatccagatgagtatttctttgaatggtccactgaattcagcacttttttcaaagacaatcatccaaagatgaaatcttggtccaaaaagcttaagttagtgaaacaatcattaatcagtcaaaagcttaagtcttcaacttcaaaagcatatctcaatctcaagtctttattcaacaagtctacttgttcactagaacaacaacaacaagaagttcctaaagaatgttcaaataagtacattaaggtatgtaaaagaaccccttttggtcatattggaaaatgtacacattcaccaacattagcaagtatgataagagataatgaaggagaaggggttcatgaagacaatgttaatagtaatcatagaaggtcattttcagcagcaatcaagaaacattcaccaacaaaatgtttatcatcttcatcatctaatggttcaacttcatcatcatcatcatcatcatctttttcattgaattctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="35301" stop="36559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35601" g_stop="36259" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E347249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35601" e_stop="36259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTTGCAACATAACCCCATCACAAATGGTTCAAAAACTTCTTCAAACATCAAAGATTCAATCTTTTCAACAACAAGAAGAGAGATTCAACATTAGTACTAACACTAGCACCCCATTTGAGTCTTGCAACATTTCTCCATCAGAGTCTTGTAGAGTGAGTTGTGAACTTAATCCAGATGAGTATTTCTTTGAATGGTCCACTGAATTCAGCACTTTTTTCAAAGACAATCATCCAAAGATGAAATCTTGGTCCAAAAAGCTTAAGTTAGTGAAACAATCATTAATCAGTCAAAAGCTTAAGTCTTCAACTTCAAAAGCATATCTCAATCTCAAGTCTTTATTCAACAAGTCTACTTGTTCACTAGAACAACAACAACAAGAAGTTCCTAAAGAATGTTCAAATAAGTACATTAAGGTATGTAAAAGAACCCCTTTTGGTCATATTGGAAAATGTACACATTCACCAACATTAGCAAGTATGATAAGAGATAATGAAGGAGAAGGGGTTCATGAAGACAATGTTAATAGTAATCATAGAAGGTCATTTTCAGCAGCAATCAAGAAACATTCACCAACAAAATGTTTATCATCTTCATCATCTAATGGTTCAACTTCATCATCATCATCATCATCATCTTTTTCATTGAATTCTAAT</genome_strand>
        <mrna_strand>TTGATTCTTGCAACATAACCCCATCACAAATGGTTCAAAAACTTCTTCAAACATCAAAGATTCAATCTTTTCAACAACAAGAAGAGAGATTCAACATTAGTACTAACACTAGCACCCCATTTGAGTCTTGCAACATTTCTCCATCAGAGTCTTGTAGAGTGAGTTGTGAACTTAATCCAGATGAGTATTTCTTTGAATGGTCCACTGAATTCAGCACTTTTTTCAAAGACAATCATCCAAAGATGAAATCTTGGTCCAAAAAGCTTAAGTTAGTGAAACAATCATTAATCAGTCAAAAGCTTAAGTCTTCAACTTCAAAAGCATATCTCAATCTCAAGTCTTTATTCAACAAGTCTACTTGTTCACTAGAACAACAACAACAAGAAGTTCCTAAAGAATGTTCAAATAAGTACATTAAGGTATGTAAAAGAACCCCTTTTGGTCATATTGGAAAATGTACACATTCACCAACATTAGCAAGTATGATAAGAGATAATGAAGGAGAAGGGGTTCATGAAGACAATGTTAATAGTAATCATAGAAGGTCATTTTCAGCAGCAATCAAGAAACATTCACCAACAAAATGTTTATCATCTTCATCATCTAATGGTTCAACTTCATCATCATCATCATCATCATCTTTTTCATTGAATTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420961" ref_strand="-" ref_description="SGN-E420961 [STM-32-E7]">
      <seq>gccattaccttcagctgcatagcaggtttcatagtaatagtcctaaaccaattccaagaccaacttgtattctatttaacccctacagatgctctagcaaaacatgctgagaaccctacaagatccaaatttcgacttggtggattagtgctagaaaatagtgtaacaccaatacccaattccccagaaatggaatttgtgattactgatttgattactgatattttggttaagtatgacgggtcgttaccggatctttttcgggaagggcattccgttgtagtagaagggtttataaagccattttctgaagagatgaagaagaaagagaatgaaatcttgagtgagaaaaagttacaggtaactgagaaggcgagaagtggggattgttattttggagctactgaagtgttggctaaacccgatgagaagtatatgcctcctgaagttgcagctgcacttgagaagaataagcagttgcttagtcagatggaagggaatgcggaagagggtgatgatgcagcacctccagctacagcgagggcgtaaggctcagccaattatagagtatggtaaaaattctaattgattattttcccgaaatgatggagttttgttatatttaaattatgattatactattgaaggaagtcagaaaaatgaatggatatatagttgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="42351" stop="41091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42051" g_stop="41372" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="717"/>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E420961" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420961" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42051" e_stop="41372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCACATTCAGCTGCATAGCAGGTTTCATAGTAATAGTCCTTAACCAATTCCAAGATCAACTTGTATTCTATTTAACCCCTACGGATGCTCTAGAAAAACACGCTGAAAATCCTACAAGATCCAAATTTCGACTCGGTGGACTAGTACTAGAAAATAGTGTAACACCAATACCCAATTCCCCAGAAATGGAATTTGTGATAACTGATTTGATTACTGATATTTTGGTTAAGTACGACGGGTCGTTACCAGATCTTTTTCGGGAAGGGCATTCCGTTGTAGTAGAAGGGTTTATAAAGCCATTTACTGAAGAGATGAAGAAGAAAGAAAACGAAATCTTGAGCGAGAAGAAGTTACAACTAACTGAGAAGGCGAGAAGTGGGGACTGTTATTTTGCAGCTACTGAAGTGTTGGCTAAACACGATGAGAAGTATATGCCTCCTGAAGTTGCAGCTGCGCTTGAAAAGAATAAACAGTTGCTTAGTCAGATGGAAGGGAAGGAGGAAGTGAGTGATGATGCAACACCTCCCGCTACAGCGAGAGCGTAAGGCTCAACCAACTATAGAGTATGGTAAAAATTCTAATTGATTATTTTCCCGAAATGACAAGAGTTTTGTTAAATTTCAATTATGATTATACTATTGAAGGAAGTTAGAAAAAACGAAGGGATATATAGTTT</genome_strand>
        <mrna_strand>GCCATTACCTTCAGCTGCATAGCAGGTTTCATAGTAATAGTCCTAAACCAATTCCAAGACCAACTTGTATTCTATTTAACCCCTACAGATGCTCTAGCAAAACATGCTGAGAACCCTACAAGATCCAAATTTCGACTTGGTGGATTAGTGCTAGAAAATAGTGTAACACCAATACCCAATTCCCCAGAAATGGAATTTGTGATTACTGATTTGATTACTGATATTTTGGTTAAGTATGACGGGTCGTTACCGGATCTTTTTCGGGAAGGGCATTCCGTTGTAGTAGAAGGGTTTATAAAGCCATTTTCTGAAGAGATGAAGAAGAAAGAGAATGAAATCTTGAGTGAGAAAAAGTTACAGGTAACTGAGAAGGCGAGAAGTGGGGATTGTTATTTTGGAGCTACTGAAGTGTTGGCTAAACCCGATGAGAAGTATATGCCTCCTGAAGTTGCAGCTGCACTTGAGAAGAATAAGCAGTTGCTTAGTCAGATGGAAGGGAATGCGGAAGAGGGTGATGATGCAGCACCTCCAGCTACAGCGAGGGCGTAAGGCTCAGCCAATTATAGAGTATGGTAAAAATTCTAATTGATTATTTTCCCGAAATGA-TGGAGTTTTGTTATATTTAAATTATGATTATACTATTGAAGGAAGTCAG-AAAAATGAATGGATATATAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285945" ref_strand="+" ref_description="SGN-E285945 [cLES-13-K18]">
      <seq>ttttttttttttttgctcactgaactgtatttcactaagtaaaatgttcataattctaaaatcttacacttcaattatcttgctcatatactacacaaaaactagagctcttaagtgcaaagatcaattttttacaacacaagactgtacattggctaagaactangacctagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="18937" stop="44432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43959" g_stop="44132" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E285945" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43959" e_stop="44132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTTAGCTTGCTCACTGAACTGTATTTCACTAAGTAAAATGTTCATAATTCTAAAATCTTACACTTCAATTATCTTGCTCATATACTACACAAAAACTAGAGCTCTTAAGTGCAAAGATCAATTTTTTACAACACAAGACTGTACATTGGCTAAGAACTA-GACCTAGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTGCTCACTGAACTGTATTTCACTAAGTAAAATGTTCATAATTCTAAAATCTTACACTTCAATTATCTTGCTCATATACTACACAAAAACTAGAGCTCTTAAGTGCAAAGATCAATTTTTTACAACACAAGACTGTACATTGGCTAAGAACTANGACCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322290" ref_strand="+" ref_description="SGN-E322290 [cTOB-24-I3]">
      <seq>ttgacgttgctgagaaagcgcgaaattcagagatagcagcgattctaaaggagcatggtgtcctgactgcaaagaacatgaagctagcattaccaacgcgttcagccaaagaactgaaacaaactgttagtgacataaaacacgacgttcacaatcagttagagcacactttccaaacacagaaaagagtgaagaacatagcgaagcgtctgaacaaaatgcacacagaaggtcttaacaacgccataaactccaccacggttgttgctgttcttattgctactgttacttttgctgccatatttaatctaccaggtcaatataccgacaaccctaaggagattcctccgggatactcaataggagaaggaaggattgctcctcaacccccttttgtgattttcttcatattcgactctcttgcactcttcatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="45244" stop="44208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44944" g_stop="44508" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E322290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44944" e_stop="44508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACCCTAAGGAGATTCCTCCGGGATACTCAATAGGAGAAGGAAGGATTGCTCCTCAACCCCCTTTTGTGATTTTCTTCATATTCGACTCTCTTGCACTCTTCATATCA</genome_strand>
        <mrna_strand>TTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACCCTAAGGAGATTCCTCCGGGATACTCAATAGGAGAAGGAAGGATTGCTCCTCAACCCCCTTTTGTGATTTTCTTCATATTCGACTCTCTTGCACTCTTCATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454226" ref_strand="+" ref_description="SGN-E454226 [cSTS-22-H15]">
      <seq>gaaagaagaagggatcttaaattggagagataaaaagggacaaacagctcttcatatggcagtcaaaggccaaagtgttgatgtggttaacgagcttattctatcggatcctactttggctaccattattgatggaaagggtaatactgctctgcatattgcaacgcgtaaaggccgtgtagagattgttcaagcactcgtaaaggacaaacgaatgaagtgggatgccatcaataaatctggtgaaactgctcttgacgttgctgagaaagcacggaattcagagatagcagcgattctaaaggaacatggtgtcctgactgcaaagaacatgaagctagctttaccaacgcgttcagccaaagaactgaaacaaactgttagtgacataaaacatgatgttcacaatcagttagagcacactttccaaactcagaaaagagtgaagaacatagcaaaacgtctgaacaaaatgcacacagaaggtatcaacaacgccataaactccaccacggttgttgctgttcttattgccactgttacctttgctgccatatttaatctaccaggccaatacaccgataatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="45749" stop="44312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45450" g_stop="45267" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45266" i_stop="45015" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45014" g_stop="44611" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="588" r_length="404" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E454226" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45450" e_stop="45267"/>
          <exon e_start="45014" e_stop="44611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAGGTAAATTCTCATATGTATGCTATACTCGTGTTTCATTTTATATGGTGGTGTTTGATTGACACGGAGTTTAAGAAAGAAAAAATGACTTTTGACGCATAAACTAAACATGTATAGCCTGGCTTTGTTCATTTCTCACTTATGCTTATATAGTTCCATATGTTTCTGTATAGGCTGACTTTCTGTTGTATTTTATTGCGCGATTTTTGATGTTCAAATGAAAACACAGCTAACTATATGAATAATTTTGTGTAGATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACCC</genome_strand>
        <mrna_strand>GAAAGAAGAAGGGATCTTAAATTGGAGAGATAAAAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTGGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAG............................................................................................................................................................................................................................................................ATTGTTCAAGCACTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTGAGAAAGCACGGAATTCAGAGATAGCAGCGATTCTAAAGGAACATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCTTTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACATGATGTTCACAATCAGTTAGAGCACACTTTCCAAACTCAGAAAAGAGTGAAGAACATAGCAAAACGTCTGAACAAAATGCACACAGAAGGTATCAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCCACTGTTACCTTTGCTGCCATATTTAATCTACCAGGCCAATACACCGATAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425246" ref_strand="+" ref_description="SGN-E425246 [STM-44-F6]">
      <seq>gaaagaagaagggatcttaaattggagagataaaaagggacaaacagctcttcatatggcagtcaaaggccaaagtgttgatgtggttaacgagcttattctatcggatcctactttggctaccattattgatggaaagggtaatactgctctgcatattgcaacgcgtaaaggccgtgtagagattgttcaagcactcgtaaaggacaaacgaatgaagtgggatgccatcaataaatctggtgaaactgctcttgacgttgctgagaaagcacggaattcagagatagcagcgattctaaaggaacatggtgtcctgactgcaaagaacatgaagctagctttaccaacgcgttcagccaaagaactgaaacaaactgttagtgacataaaacatgatgttcacaatcagttagagcacactttccaaactcagaaaagagtgaagaacatagcaaaacgtctgaacaaaatgcacacagaaggtatcaacaacgccataaactccaccacggttggtgctggtcttattgccactggtacctttgctgccatatttaatctaccaagccaatacaccgataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="45749" stop="44314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45450" g_stop="45267" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45266" i_stop="45015" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45014" g_stop="44612" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="587" r_length="403" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E425246" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45450" e_stop="45267"/>
          <exon e_start="45014" e_stop="44612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAGGTAAATTCTCATATGTATGCTATACTCGTGTTTCATTTTATATGGTGGTGTTTGATTGACACGGAGTTTAAGAAAGAAAAAATGACTTTTGACGCATAAACTAAACATGTATAGCCTGGCTTTGTTCATTTCTCACTTATGCTTATATAGTTCCATATGTTTCTGTATAGGCTGACTTTCTGTTGTATTTTATTGCGCGATTTTTGATGTTCAAATGAAAACACAGCTAACTATATGAATAATTTTGTGTAGATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACC</genome_strand>
        <mrna_strand>GAAAGAAGAAGGGATCTTAAATTGGAGAGATAAAAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTGGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAG............................................................................................................................................................................................................................................................ATTGTTCAAGCACTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTGAGAAAGCACGGAATTCAGAGATAGCAGCGATTCTAAAGGAACATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCTTTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACATGATGTTCACAATCAGTTAGAGCACACTTTCCAAACTCAGAAAAGAGTGAAGAACATAGCAAAACGTCTGAACAAAATGCACACAGAAGGTATCAACAACGCCATAAACTCCACCACGGTTGGTGCTGGTCTTATTGCCACTGGTACCTTTGCTGCCATATTTAATCTACCAAGCCAATACACCGATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204247" ref_strand="+" ref_description="SGN-E204247 [cLEC-13-P15]">
      <seq>attaatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacaaggtgattttgaaatggtgaaggtactattggaggcatttcctcagctgtcagttacatttgatcagtcaaattccacagcattgcacactgcatcagcacaaggtcacattgatgttgtcaatttcctcttggagactaatagcagtttagccaccataccgaagaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcagttgtgaaggcacttctaagcaaagaagaagggattctaaattggagagataagaagggacaaacagctcttcatatggcagtcaaaggccaaagtgttgatgtcgttaacgagcttattctatcggatcctactttggctaccattattgatggaaagggtaatactgctctgcatattgcaacgcgtaaaggccgtgtagagatcgttcaagcagtcgtaaaggacaaacgaatgaagtgggatgccatcaataaatctggtgaaactgctcttgacgttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46662" stop="44633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46362" g_stop="46271" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45267" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="502" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45266" i_stop="45015" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45014" g_stop="44933" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="584" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E204247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46362" e_stop="46271"/>
          <exon e_start="45676" e_stop="45267"/>
          <exon e_start="45014" e_stop="44933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAGGTAAATTCTCATATGTATGCTATACTCGTGTTTCATTTTATATGGTGGTGTTTGATTGACACGGAGTTTAAGAAAGAAAAAATGACTTTTGACGCATAAACTAAACATGTATAGCCTGGCTTTGTTCATTTCTCACTTATGCTTATATAGTTCCATATGTTTCTGTATAGGCTGACTTTCTGTTGTATTTTATTGCGCGATTTTTGATGTTCAAATGAAAACACAGCTAACTATATGAATAATTTTGTGTAGATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTG</genome_strand>
        <mrna_strand>ATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAG............................................................................................................................................................................................................................................................ATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290984" ref_strand="+" ref_description="SGN-E290984 [cLET-8-D21]">
      <seq>gattttgaaatggtgaaggtactattggaggcatttcctcagctgtcatatacatttgatcaggcaaattccacagcattgcacactgcatcagcacaaggtcacattgatgttgtcaatttcctcatggagactaatagcagattagccaccataccgaacaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcaggtgtgaaggcacttctaagcaaagaagaacggattctaaattggagagataagaagggacaaacagctcttcatatggcagtcaaaggccaaagtgttgatgtcgctaacgagcttattgtatcggatcctactttggctaccattattgatggatagggtaatactgctctgcatattgcaacgcgtaaaggccgtgtagagatcgttcacgcagtcgtacatgacacacgaatgaagtgggatgccatcaataaatctggtgaaactgctcttgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="45977" stop="44639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45676" g_stop="45267" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="417" r_length="410" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45266" i_stop="45015" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45014" g_stop="44939" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="493" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E290984" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45676" e_stop="45267"/>
          <exon e_start="45014" e_stop="44939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAGGTAAATTCTCATATGTATGCTATACTCGTGTTTCATTTTATATGGTGGTGTTTGATTGACACGGAGTTTAAGAAAGAAAAAATGACTTTTGACGCATAAACTAAACATGTATAGCCTGGCTTTGTTCATTTCTCACTTATGCTTATATAGTTCCATATGTTTCTGTATAGGCTGACTTTCTGTTGTATTTTATTGCGCGATTTTTGATGTTCAAATGAAAACACAGCTAACTATATGAATAATTTTGTGTAGATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACG</genome_strand>
        <mrna_strand>AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCATATACATTTGATCAGGCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCATGGAGACTAATAGCAGATTAGCCACCATACCGAACAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGGTGTGAAGGCACTTCTAAGCAAAGAAGAACGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGCTAACGAGCTTATTGTATCGGATCCTACTTTGGCTACCATTATTGATGGATAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAG............................................................................................................................................................................................................................................................ATCGTTCACGCAGTCGTACATGACACACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325692" ref_strand="+" ref_description="SGN-E325692 [cTOC-15-K20]">
      <seq>tttgtgtgaaaaagatgacaaaacaattaacaggaaaaagaggagacacacaaatccattcagttgtaagaagtggaaatcttgaattagttttagagataattacttgttgtaatgaagcagaattgattgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttggttaaggaattaatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacaaggtgattttgaaatggtgaaggtactattggaggcatttcctcagctgtcagttacatttgatcagtcaaattccacagcattgcacactgcatcagcacaaggtcacattgatgttgtcaatttcctcttggagactaatagcagtttagccaccataccgaagaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcagttgtgaaggcacttctaagcaaagaagaagggattctaaattggagagataagaagggacaaacagctcttcatatggcagtcaaaggccaaagtgttgatgtcgttaacgagcttattctatcggatcctactttggctaccattattgatggaaagggtaatactgctctgcatattgcaacgcgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46876" stop="44978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46576" g_stop="46271" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45278" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="705" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E325692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46576" e_stop="46271"/>
          <exon e_start="45676" e_stop="45278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAG</genome_strand>
        <mrna_strand>TTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432101" ref_strand="+" ref_description="SGN-E432101 [STM-56-D15]">
      <seq>taaaatgacaaaacagttaacagggaaaagaggagacacacaaatccattcagttgtaagaagtgggaatcttgaattggttttagagattattacttgttgtagtgaagcagaattggttgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttagtgaaggaattgatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacagggtgattttgaaatggtgaaggtactattagaggcatttcctcagctgtcagttacatttgatcagtcaaattccacagcattgcacactgcatctgcacaaggtcacattgatgttgtcaatttccttttggaaactaatagcagtttagccacaatacagaagaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcagttgtgaaggcacttttaaggaaagaagaagggatcttaaattggagagataaaaagggacaaacagctcttcatatggcagtcaaaggccaaagtgttgatgtggttaacgagcttattctatcggatcctactttggctaccattattgatgggaagggtaatactgctctgcatattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46866" stop="44988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46566" g_stop="46271" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45288" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="685" r_length="389" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E432101" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46566" e_stop="46271"/>
          <exon e_start="45676" e_stop="45288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCA</genome_strand>
        <mrna_strand>TAAAATGACAAAACAGTTAACAGGGAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGGAATCTTGAATTGGTTTTAGAGATTATTACTTGTTGTAGTGAAGCAGAATTGGTTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTAGTGAAGGAATTGATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAGGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTAGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCTGCACAAGGTCACATTGATGTTGTCAATTTCCTTTTGGAAACTAATAGCAGTTTAGCCACAATACAGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTTTAAGGAAAGAAGAAGGGATCTTAAATTGGAGAGATAAAAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTGGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGGAAGGGTAATACTGCTCTGCATATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400806" ref_strand="+" ref_description="SGN-E400806 [PPC-2-O5]">
      <seq>aaatgacaaaacagttaacagggaaaagaggagacacacaaatccattcagttgtaagaagtgggaatcttgaattggttttagagattattacttgttgtagtgaagcagaattggttgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttagtgaaggaattgatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacagggtgattttgaaatggtgaaggtactattagaggcatttcctcagctgtcagttacatttgatcagtcaaattccacagcattgcacactgcatctgcacaaggtcacattgatgttgtcaatttccttttggaaactaatagcagtttagccacaatacagaagaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcagttgtgaaggcacttttaaggaaagaagaagggatcttaaattggagagataaaaagggacaaacagctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46865" stop="45099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46564" g_stop="46271" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45399" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="572" r_length="278" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E400806" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46564" e_stop="46271"/>
          <exon e_start="45676" e_stop="45399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTT</genome_strand>
        <mrna_strand>AAATGACAAAACAGTTAACAGGGAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGGAATCTTGAATTGGTTTTAGAGATTATTACTTGTTGTAGTGAAGCAGAATTGGTTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTAGTGAAGGAATTGATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAGGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTAGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCTGCACAAGGTCACATTGATGTTGTCAATTTCCTTTTGGAAACTAATAGCAGTTTAGCCACAATACAGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTTTAAGGAAAGAAGAAGGGATCTTAAATTGGAGAGATAAAAAGGGACAAACAGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249384" ref_strand="+" ref_description="SGN-E249384 [cLEF-50-D5]">
      <seq>agaagtggaaatcttgaattagttttagagataattacttgttgtaatgaagcagaattgattgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttggttaaggaattaatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacaaggtgattttgaaatggtgaaggtactattggaggcatttcctcagctgtcagttacatttgatcagtcaaattccacagcattgcacactgcatcagcacaaggtcacattgatgttgtcaatttcctcttggagactaatagcagtttagccaccataccgaagaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcagttgtgaaggcacttctaagcaaagaagaagggattctaaattggagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46808" stop="45121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46508" g_stop="46271" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45421" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="494" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E249384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46508" e_stop="46271"/>
          <exon e_start="45676" e_stop="45421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGA</genome_strand>
        <mrna_strand>AGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327156" ref_strand="+" ref_description="SGN-E327156 [cTOC-18-D1]">
      <seq>tttgtgtgaaaaagatgacaaaacaattaacaggaaaaagaggagacacacaaatccattcagttgtaagaagtggaaatcttgaattagttttagagataattacttgttgtaatgaagcagaattgattgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttggttaaggaattaatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacaaggtgattttgaaatggtgaaggtactattggaggcatttcctcagctgtcagttacatttgatcagtcaaattccacagcattgcacactgcatcagcacaaggtcacattgatgttgtcaatttcctcttggagactaatagcagtttagccaccataccgaagaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46876" stop="45168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46576" g_stop="46271" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45468" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="515" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E327156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46576" e_stop="46271"/>
          <exon e_start="45676" e_stop="45468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTT</genome_strand>
        <mrna_strand>TTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301292" ref_strand="+" ref_description="SGN-E301292 [cLEW-24-F22]">
      <seq>gttgtgcagcaaaatgtttgtgtgaaaaagatgactaaacaattaacaggaaaaagaggagacacacaaatccattcagttgtaagaagtggaaatcttgaattacttgtagagataattacttgttgtaatgaagcagaattgattgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttggttaaggaattaatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacaaggtgattttgaaatggtgaaggtactattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46892" stop="45356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46592" g_stop="46271" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45656" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="343" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E301292" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46592" e_stop="46271"/>
          <exon e_start="45676" e_stop="45656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGG</genome_strand>
        <mrna_strand>GTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACTAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTACTTGTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295317" ref_strand="+" ref_description="SGN-E295317 [cLET-20-H6]">
      <seq>taagatggattcctctgttgtgcagcaaaatgtttgtgtgaaaaagatgacaaaacaattaacaggaaaaagaggagacacacaaatccattcagttgtaagaagtggaaatcttgaattagttttagagataattacttgttgtaatgaagcagaattgattgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttggttaaggaattaatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacaaggtgattttggtaagtgtttagtttttttttcttcatattattcttcgcgaatctttaacttgtttggaattgaggcgttgtatgtagcagtggttgttttgttatggtttttcattatgtatgaatttttcatttatcataagtatgtgacctaacagttaatgaaaaaagaggaatatagattacaaacttgtttgggattgaggcgtcgtagttcttgttttttcatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46908" stop="45745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46608" g_stop="46045" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E295317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46608" e_stop="46045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATGGATTCCTCTGTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCT</genome_strand>
        <mrna_strand>TAAGATGGATTCCTCTGTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745967" ref_strand="+" ref_description="SGN-E745967 [GI|47105435]">
      <seq>ggagctagtcacggaaagagtgtcggcaaggtttcagtttcaagaatgatagagagacaagaaagagagtgagagttttaatggaaaaaaaaaagtttcaatctttttggcgttaaacatcataataatcaatactatgagttactagtgatagtaatagtgtattaaatggggaaccaccatggccgtttctctcacagtaaacatcatcatcatcatcataatcaacaaggtcccccattttttgtacctacacaacaaacccaaaatacccagatgggtatagctttgccttatgctaatgttgattccaatttgcgtggtcttgctggtcaagctgagggttttggtggttcttccattggtggtcgtgatggtcatgtttatcaagttcttaatcttaatgatgatgggccaggatcacttcgagatggatgtcgtaaaaaagaacctttgtggatcgtctttgaagtttcagggactattgagctccgttctcatttgagtgtgtcctctttcaaaactattgacgggcgaggccaaaaaatcaaactcactgggaaagggttgaggttgaaagaatgtgaacatgttattatctgcaatctagagtttgagggaggtagaggacatgatgttgatggcattcagattaaaccaaaatcgaggcatatttggatagatcgttgtagccttagcgactatgacgatggtttaattgacatcacaaaagagagcacagatattactgtttctaggtgtcacttttcaaagcatgacaaaacaatgcttattggaggagattcttctaattgtggtgacagatgtatgagggtcaccattcaccattgtttttttgacggaactagacagcggcatcctcgtgttaggtttgccaaagtacatttgtacaataactacactaggaactggggaatttatgctgtttgtgctagtgtagaatcacagatatattcacaatgcaatatatatgaagctggacaaaaaaaggtggccttcaaatatctaacagagaaggcagctgataaggaagaagcatgtactggtagcattaaatctgaagatgacttgtttgtttgtggaactcaggctggtttattgtctacttgcagcgaaaataacgtcttcaatccatctgagttctaccaaacctggactgttgaacgtcccagcgatgatctcaaacactaccttcaacattgtacaggatggcagtgtattccgcggccaaattgatcagcctttctccagctgtttaggataacgtacatgaacagagacggtagcttcaacgtgtaaagcatctactactacaacgtcgtttatcatcgatttgttgttgctatcatctcttgtctattgttgtcattatatctatgtattatgttaaacataaactacaatcattgaagtaagaaaaaaatcctaaaaaatctcatacttttagcctctttggtgtgaaccttaaccaatttgtttattcaatgaagttggtggcaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="51476" stop="58100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51775" g_stop="52180" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52181" i_stop="53804" i_length="1624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53805" g_stop="54156" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="758" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54157" i_stop="54236" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54237" g_stop="54447" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="969" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54448" i_stop="54582" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54583" g_stop="54651" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1038" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54652" i_stop="56409" i_length="1758">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56410" g_stop="56899" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1528" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1529" polyA_stop="1540"/>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E745967" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1528</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51775" e_stop="52180"/>
          <exon e_start="53805" e_stop="54156"/>
          <exon e_start="54237" e_stop="54447"/>
          <exon e_start="54583" e_stop="54651"/>
          <exon e_start="56410" e_stop="56899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTAGTCACGGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATGGTTAGTTTGATTCTAATTTTAATTTTAATTTCGTTTCTTCTTTTGGGTATGTGTTGAATTGGTTGTTGTAATGGGTGTGTGTGTTATTTTTATATTTTGGGGTTTAATGGAATAGCGATAGATTTATATAGATGACACGAACTTGTTTGATTTGAGATTGAGGTGTAGTTTGTAAGTTATACTATGCTTTGAGCTATAATGGGATAGCGAGGATTCGTATAGCGGACTCTAACTTGTTTTGGATTGAAGTATAGTTGTTGTTGTAAGTTACACAATGCTTGACCTTAAAATGTAATAGAGAGGACTCATATAGCTGACTCTAACTTGTTTGGATCTGTTGCTGTAAATTACATCTATGTGTGCTATTTTGAGTTGGGAAGGGCAGGATTTTTCTTGTCTTTCGAAAATGCTGCGAAAAGTGTTTGCTTTTGGATTTTGATGTTGTTCGTAAGTAGTTTGGCTGGTTGAGAGAAATCTTTTGAATTGGTTTGACACAGCATGGACTAGCTTTCCTCTTCTTTAAGTTGTTCTACCTTGATAAAAACTTCGTCTGATCGATCAATTATATGTCTAGATTCTAAATTAGTTCTGATTAGCTATTAGAATGCTCTCTTATCACCATTTGTCGTATATTCATGTCCGCTTCAGTAATGCTAAAAGATTTCCTATTAAGGCAAATCAGGTGACTCTGTATCTCACACTTTTACCCGAGAGTTGTTTAATCTGGACTTCTTGTTATCGTCTATATGGACCATTGTCTTTATTGTGTGTTATTCTTAGCTAAATATGCATTGATTTTTGATGAAGTAGCTAAGTTCGCGTTGTACTAGTAGATTCATTCAAGGCAACTTCCCATTTTAGATTTATTCATTCCTTTTTCATCATATTGTCACACTTACAGACCGGTGAATATGCATAAACTCATATAAGGTTTTCTGAGACAACTTTAATTACTTATGCCTTATTATTGGACAACATATCTATCCTTCCTTTTCGTTTGCTCATAAGTTTTCCTATCTGTGGTACTGTCTGAATAGGTTGTACTCTAGATTGGATCAATTGAGTTCGCAAATCTAATGTGCGTACACGCATCTTAATACTCTTATTTCTGATCTTTCGAGAAAAAGATCCATTCTTTTCATAAAAAATAGGAGGTATCACCAATGAAGATTAATGTTTTGATTCATCCCTGGCCTCATTCAAGTATCGCGATCCTTGTACATGTGCAGTCAAAGTCCATTTAATTAATTACTTGTCATTCTATACCATTTGTTTTAAAAAACCAGATAATGGATATGAACGAAATCCTTTGGCTTTCCCTTTGTTAGGATGATGTGTATTAAGATGGAAATTCTTCTCTGCAAAGCCAGCTAACAGCATTATGGCCTGCTTATGAACATGAGCAGGTTCCTCTCTGCTTTTACTCTTGCCTTCCTTATCTTTCATGTTTTCTGTCCCACGTCTTTCCTTGAGCCGAGTGTCAAACAGCCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTACACTCCCCTCCCCTCCCCAGACCCCACTTATGTGATTATCTTAGATTGTTCTGTGCCTCTCATAATACTATTGGACTTATCTTTCTCATATTATTGTAGATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAGGTCAGCTGAATCAGCATTATCAGATATCTTTGTTATGACATCTATATTTTTCTTATCTTGAATGTTGTATTTGCAACCAGGTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAGGTAGTACTGCTTTTTAGCAACATCTTCCTCTCTTTCTCCCTCGTCTTTTTGAAGGGAAGGGATATAGCGTTGTGTAAATTCAGTAATATTTGTCCATTCTGCTATTATTGATGACTTAATTATCTCTCGTGTCAGATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAGGTAAATCTACTAACTAATACTTAGGAGTATTTATTTTGCTTCCAAAACTATGTGATGATCATCTATGTTTTTCTTTAATGCAAAAATTTACCAATTCGTTCTCTTAACAGCAACTTGAATTGCACAGCAAATTTGAGCAGCCTTAACCTTTAAATCCAAAACTGCAAATGTAATTGTCAATATCTATAATTATTTGTGCTTCACGTAAACTGTGCCTGTATAGAGTCACAAAGTATAGCCCGTGGTGTCAATCCTTGTTGTTTGAGTGTTATGGTAAGAAAGTGGGTTAACTTAACTATTCCGTCTGTTCGTGATTATGATAAAAAAACAGAGATTTTGACGTTGAGATTGAGGTTTCGTAGGTAAAGCTTATTTGTCATTCAACAGAAGGTAGCATGTGTGCGCTTCTCCGGGAATGAATTGTAATGATGAAGCGTCTTTGGTTCCAATGAGTCTTTGGGATGGCACAACTTTTTGAGATTTTCCTGCTCTTTCTGGCAATTGGAAACACCCCCATTTATGCTACCCATTTTAGAGGTGCTTGATGTGCCTGGTCAGTTTTCCCCTTAGACTTAGAGCGAAGAAGAGAGGGGCTTTGTATAGACACTATTGAGCCATGTTCGTACCCTAGGCTTACCTTTATTTCATTTATAGAGGAAGCATTCATAGGGATAAATAGGTACCCTGTGGAATTAGTCGAGGTGCCCGCAAGCTGACTTGGACACCTTTTTCTTTAGTTATATTTATATTAGTTTTTGGACTAGCTCAGAATAATCTTGTCCGGGACAATTGTCCCTCTTTCTTCTCCTTCATCACTGCTTCTTTTCTAGTGGACTTCTATGCTTATGGACTATGGTTGGTCATCAAATTTGGAGAAAAAGAACTTGATGTAAGTTGAGAAAATCCAACGTCGAGCTCATTCCATACCCATTTTATTATCATATTTAACAATTGAACCAACAGCCTAATTGAAGGATCAATTGCATGTCCTTTGTATAACAATTTTTTTGCTGGCTTTTCCATTTGAAAGAATTAGTGATCATGCTGATAATGTAAAGTAATCTCTATTTGAGCTGAAAACTTCCTGTTCCATATCAATCTTCCTTTAAATTTCTTTCGTAGTTCCGTATATGCATTTAGTTATACGTGTGTTTTTCTTCGTTTCAATGCCTCCCTCCAAAATGTCAAAGTGGGACAGTTAGAGAAAGAGGCATTTCATTCTCCCCTTTTTCCATATATGGCACATGGCTTTGTGGTGGTTATCCAGTCTCTATCAGCCAGTTGTATAGAACACCCTTTCGGCCCTTATTAGGGGCCTAGATGCTTCATATTTGTATCAAAATTATTAATGGAAGTGGAAGTCATGTAAGGAAAGCTCACGGAACTTTTAAGGCGTCTTTTTTTTGATAACCATGGTGTCCAAGCCAACTTGAACACACCTTGACTAAATCCACGGGATGTCTGTCACCTTTATCCACCAAGACTAGGAACCTATGAGGATAAATCATGTAGTGTTTTTTCTTTTTGTCTTTGCTTGGATTTAAACCGAAGAACTCATGGTTCTCATGCACTTCGTTGACCACTATGCCACACCTGTGGGTGCACTTTTAAAGCGTCTTTGTCGCATATATTCTAAACAACAACTTATTGATGTTTGAAATTTTCTTTGCTTATGTACCATCAACTCTTAAATTGCTAACCTTTAATGATCTCTTAGTCTCTTTCACTACCTAACTGGCTCTTTATGTCATCCTACAGGCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATGACTTGTTTGTTTGTGGAACTCAGGCTGGTTTATTGTCTACTTGCAGCGAAAATAACGTCTTCAATCCATCTGAGTTCTACCAAACCTGGACTGTTGAACGTCCCAGCGATGATCTCAAACACTACCTTCAACATTGTACAGGATGGCAGTGTATTCCGCGGCCAAATTGATCAGCCTTTCTCCAGCTGTTTAGGATAACGTACATGAACAGAGACGGTAGCTTCAACGTGTAAAGCATCTACTACTACAACGTCGTTTATCATCGATTTGTTGTTGCTATCATCTCTTGTCTATTGTTGTCATTATATCTATGTATTATGTTAAACATAAACTACAATCATTGAAGTAAGAAAAAAATCCTAAAAAATCTCATACTTTTAGCCTCTTTGGTGTGAACCTTAACCAATTTGTTTATTCAATGAAGTTGGTGGCAAGTAAATA</genome_strand>
        <mrna_strand>GGAGCTAGTCACGGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAG................................................................................GTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAG.......................................................................................................................................ATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATGACTTGTTTGTTTGTGGAACTCAGGCTGGTTTATTGTCTACTTGCAGCGAAAATAACGTCTTCAATCCATCTGAGTTCTACCAAACCTGGACTGTTGAACGTCCCAGCGATGATCTCAAACACTACCTTCAACATTGTACAGGATGGCAGTGTATTCCGCGGCCAAATTGATCAGCCTTTCTCCAGCTGTTTAGGATAACGTACATGAACAGAGACGGTAGCTTCAACGTGTAAAGCATCTACTACTACAACGTCGTTTATCATCGATTTGTTGTTGCTATCATCTCTTGTCTATTGTTGTCATTATATCTATGTATTATGTTAAACATAAACTACAATCATTGAAGTAAGAAAAAAATCCTAAAAAATCTCATACTTTTAGCCTCTTTGGTGTGAACCTTAACCAATTTGTTTATTCAATGAAGTTGGTGGCAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214762" ref_strand="+" ref_description="SGN-E214762 [cLEC-79-I9]">
      <seq>ggaaagagtgtcggcaaggtttcagtttcaagaatgatagagagacaagaaagagagtgagagttttaatggaaaaaaaaaagtttcaatctttttggcgttaaacatcataataatcaatactatgagttactagtgatagtaatagtgtattaaatggggaaccaccatggccgtttctctcacagtaaacatcatcatcatcatcataatcaacaaggtcccccattttttgtacctacacaacaaacccaaaatacccagatgggtatagctttgccttatgctaatgttgattccaatttgcgtggtcttgctggtcaagctgagggttttggtggttcttccattggtggtcgtgatggtcatgtttatcaagttcttaatcttaatgatgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="51487" stop="52484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51787" g_stop="52180" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E214762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51787" e_stop="52180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATG</genome_strand>
        <mrna_strand>GGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331948" ref_strand="+" ref_description="SGN-E331948 [cTOD-16-G16]">
      <seq>agaatgatagagagacaagaaagagagtgagagttttaatggaaaaaaaaaaagtttcaatctttttggcgttaaacatcataataatcaatactatgagttactagtgatagtaatagtgtattaaatggggaaccaccatggccgtttctctcacagtaaacatcatcatcatcatcataatcaacaaggtcccccattttttgtacctacacaacaaacccaaaatacccagatgggtatagctttgccttatgctaatgttgattccaatttgcgtggtcttgctggtcaagctgagggttttggtggttcttccattggtggtcgtgatggtcatgtttatcaagttcttaatcttaatgatgatgggccaggatcacttcgagatggatgtcgtaaaaaagaacctttgtggatcgtctttgaagtttcagggactattgagctccgttctcatttgagtgtgtcctctttcaaaactattgacgggcgaggccaaaaaaatcaaactcactgggaaagggttgaggttgaaagaatgtgaacatgttattatctgcaatctagagtttgagggaggtagaggacatgatgttgatggcattcagattaaccaaaatcgaggcatttttggatagatcgttgtagccttagcgactatgacgatggtttaattgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="51517" stop="54423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="52180" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52181" i_stop="53804" i_length="1624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53805" g_stop="54123" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="684" r_length="319" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E331948" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="52180"/>
          <exon e_start="53805" e_stop="54123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGG-AAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATGGTTAGTTTGATTCTAATTTTAATTTTAATTTCGTTTCTTCTTTTGGGTATGTGTTGAATTGGTTGTTGTAATGGGTGTGTGTGTTATTTTTATATTTTGGGGTTTAATGGAATAGCGATAGATTTATATAGATGACACGAACTTGTTTGATTTGAGATTGAGGTGTAGTTTGTAAGTTATACTATGCTTTGAGCTATAATGGGATAGCGAGGATTCGTATAGCGGACTCTAACTTGTTTTGGATTGAAGTATAGTTGTTGTTGTAAGTTACACAATGCTTGACCTTAAAATGTAATAGAGAGGACTCATATAGCTGACTCTAACTTGTTTGGATCTGTTGCTGTAAATTACATCTATGTGTGCTATTTTGAGTTGGGAAGGGCAGGATTTTTCTTGTCTTTCGAAAATGCTGCGAAAAGTGTTTGCTTTTGGATTTTGATGTTGTTCGTAAGTAGTTTGGCTGGTTGAGAGAAATCTTTTGAATTGGTTTGACACAGCATGGACTAGCTTTCCTCTTCTTTAAGTTGTTCTACCTTGATAAAAACTTCGTCTGATCGATCAATTATATGTCTAGATTCTAAATTAGTTCTGATTAGCTATTAGAATGCTCTCTTATCACCATTTGTCGTATATTCATGTCCGCTTCAGTAATGCTAAAAGATTTCCTATTAAGGCAAATCAGGTGACTCTGTATCTCACACTTTTACCCGAGAGTTGTTTAATCTGGACTTCTTGTTATCGTCTATATGGACCATTGTCTTTATTGTGTGTTATTCTTAGCTAAATATGCATTGATTTTTGATGAAGTAGCTAAGTTCGCGTTGTACTAGTAGATTCATTCAAGGCAACTTCCCATTTTAGATTTATTCATTCCTTTTTCATCATATTGTCACACTTACAGACCGGTGAATATGCATAAACTCATATAAGGTTTTCTGAGACAACTTTAATTACTTATGCCTTATTATTGGACAACATATCTATCCTTCCTTTTCGTTTGCTCATAAGTTTTCCTATCTGTGGTACTGTCTGAATAGGTTGTACTCTAGATTGGATCAATTGAGTTCGCAAATCTAATGTGCGTACACGCATCTTAATACTCTTATTTCTGATCTTTCGAGAAAAAGATCCATTCTTTTCATAAAAAATAGGAGGTATCACCAATGAAGATTAATGTTTTGATTCATCCCTGGCCTCATTCAAGTATCGCGATCCTTGTACATGTGCAGTCAAAGTCCATTTAATTAATTACTTGTCATTCTATACCATTTGTTTTAAAAAACCAGATAATGGATATGAACGAAATCCTTTGGCTTTCCCTTTGTTAGGATGATGTGTATTAAGATGGAAATTCTTCTCTGCAAAGCCAGCTAACAGCATTATGGCCTGCTTATGAACATGAGCAGGTTCCTCTCTGCTTTTACTCTTGCCTTCCTTATCTTTCATGTTTTCTGTCCCACGTCTTTCCTTGAGCCGAGTGTCAAACAGCCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTACACTCCCCTCCCCTCCCCAGACCCCACTTATGTGATTATCTTAGATTGTTCTGTGCCTCTCATAATACTATTGGACTTATCTTTCTCATATTATTGTAGATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCC-AAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACAT</genome_strand>
        <mrna_strand>AGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATT-AACCAAAATCGAGGCATTTTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242603" ref_strand="+" ref_description="SGN-E242603 [cLED-30-L18]">
      <seq>tgagctccgttctcatttgagtgtgtcctctttcaaaactattgacgggcgaggcaaaaaaatcaaactcactgggaaagggttgaggttgaaagaatgtgaacatgttattatctgcaatctagagtttgagggaggtagaggacatgatgttgatggcattcagattaaaccaaaatcgaggcatatttggatagatcgttgtagccttagcgactatgacgatggtttaattgacatcacaaaagagagcacagatattactgtttctaggtgtcacttttcaaagcatgacaaaacaatgcttattggaggagattcttctaattgtggtgacagatgtatgagggtcaccattcaccattgtttttttgacggaactagacagcggcatcctcgtgttaggtttgccaaagtacatttgtacaataactacactaggaactggggaatttatgctgtttgtgctagtgtagaatcacagatatattcacaatgcaatatatatgaagctggacaaaaaaaggtggccttcaaatatctaacagagaaggcagctgataaggaagaagcatgtactggtagcattaaatctgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="53584" stop="56758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53884" g_stop="54156" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54157" i_stop="54236" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54237" g_stop="54447" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="484" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54448" i_stop="54582" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54583" g_stop="54651" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="553" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54652" i_stop="56409" i_length="1758">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56410" g_stop="56458" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="602" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E242603" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53884" e_stop="54156"/>
          <exon e_start="54237" e_stop="54447"/>
          <exon e_start="54583" e_stop="54651"/>
          <exon e_start="56410" e_stop="56458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAGGTCAGCTGAATCAGCATTATCAGATATCTTTGTTATGACATCTATATTTTTCTTATCTTGAATGTTGTATTTGCAACCAGGTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAGGTAGTACTGCTTTTTAGCAACATCTTCCTCTCTTTCTCCCTCGTCTTTTTGAAGGGAAGGGATATAGCGTTGTGTAAATTCAGTAATATTTGTCCATTCTGCTATTATTGATGACTTAATTATCTCTCGTGTCAGATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAGGTAAATCTACTAACTAATACTTAGGAGTATTTATTTTGCTTCCAAAACTATGTGATGATCATCTATGTTTTTCTTTAATGCAAAAATTTACCAATTCGTTCTCTTAACAGCAACTTGAATTGCACAGCAAATTTGAGCAGCCTTAACCTTTAAATCCAAAACTGCAAATGTAATTGTCAATATCTATAATTATTTGTGCTTCACGTAAACTGTGCCTGTATAGAGTCACAAAGTATAGCCCGTGGTGTCAATCCTTGTTGTTTGAGTGTTATGGTAAGAAAGTGGGTTAACTTAACTATTCCGTCTGTTCGTGATTATGATAAAAAAACAGAGATTTTGACGTTGAGATTGAGGTTTCGTAGGTAAAGCTTATTTGTCATTCAACAGAAGGTAGCATGTGTGCGCTTCTCCGGGAATGAATTGTAATGATGAAGCGTCTTTGGTTCCAATGAGTCTTTGGGATGGCACAACTTTTTGAGATTTTCCTGCTCTTTCTGGCAATTGGAAACACCCCCATTTATGCTACCCATTTTAGAGGTGCTTGATGTGCCTGGTCAGTTTTCCCCTTAGACTTAGAGCGAAGAAGAGAGGGGCTTTGTATAGACACTATTGAGCCATGTTCGTACCCTAGGCTTACCTTTATTTCATTTATAGAGGAAGCATTCATAGGGATAAATAGGTACCCTGTGGAATTAGTCGAGGTGCCCGCAAGCTGACTTGGACACCTTTTTCTTTAGTTATATTTATATTAGTTTTTGGACTAGCTCAGAATAATCTTGTCCGGGACAATTGTCCCTCTTTCTTCTCCTTCATCACTGCTTCTTTTCTAGTGGACTTCTATGCTTATGGACTATGGTTGGTCATCAAATTTGGAGAAAAAGAACTTGATGTAAGTTGAGAAAATCCAACGTCGAGCTCATTCCATACCCATTTTATTATCATATTTAACAATTGAACCAACAGCCTAATTGAAGGATCAATTGCATGTCCTTTGTATAACAATTTTTTTGCTGGCTTTTCCATTTGAAAGAATTAGTGATCATGCTGATAATGTAAAGTAATCTCTATTTGAGCTGAAAACTTCCTGTTCCATATCAATCTTCCTTTAAATTTCTTTCGTAGTTCCGTATATGCATTTAGTTATACGTGTGTTTTTCTTCGTTTCAATGCCTCCCTCCAAAATGTCAAAGTGGGACAGTTAGAGAAAGAGGCATTTCATTCTCCCCTTTTTCCATATATGGCACATGGCTTTGTGGTGGTTATCCAGTCTCTATCAGCCAGTTGTATAGAACACCCTTTCGGCCCTTATTAGGGGCCTAGATGCTTCATATTTGTATCAAAATTATTAATGGAAGTGGAAGTCATGTAAGGAAAGCTCACGGAACTTTTAAGGCGTCTTTTTTTTGATAACCATGGTGTCCAAGCCAACTTGAACACACCTTGACTAAATCCACGGGATGTCTGTCACCTTTATCCACCAAGACTAGGAACCTATGAGGATAAATCATGTAGTGTTTTTTCTTTTTGTCTTTGCTTGGATTTAAACCGAAGAACTCATGGTTCTCATGCACTTCGTTGACCACTATGCCACACCTGTGGGTGCACTTTTAAAGCGTCTTTGTCGCATATATTCTAAACAACAACTTATTGATGTTTGAAATTTTCTTTGCTTATGTACCATCAACTCTTAAATTGCTAACCTTTAATGATCTCTTAGTCTCTTTCACTACCTAACTGGCTCTTTATGTCATCCTACAGGCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATG</genome_strand>
        <mrna_strand>TGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCAAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAG................................................................................GTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAG.......................................................................................................................................ATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242602" ref_strand="+" ref_description="SGN-E242602 [cLED-30-L16]">
      <seq>tgagctccgttctcatttgagtgtgtcctctttcaaaactattgacgggcgaggcaaaaaaatcaaactcactgggaaagggttgaggttgaaagaatgtgaacatgttattatctgcaatctagagtttgagggaggtagaggacatgatgttgatggcattcagattaaaccaaaatcgaggcatatttggatagatcgttgtagccttagcgactatgacgatggtttaattgacatcacaaaagagagcacagatattactgtttctaggtgtcacttttcaaagcatgacaaaacaatgcttattggaggagattcttctaattgtggtgacagatgtatgagggtcaccattcaccattgtttttttgacggaactagacagcggcatcctcgtgttaggtttgccaaagtacatttgtacaataactacactaggaactggggaatttatgctgtttgtgctagtgtagaatcacagatatattcacaatgcaatatatatgaagctggacaaaaaaaggtggccttcaaatatctaacagagaaggcagctgataaggaagaagcatgtactggtagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="53584" stop="56743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53884" g_stop="54156" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54157" i_stop="54236" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54237" g_stop="54447" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="484" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54448" i_stop="54582" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54583" g_stop="54651" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="553" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54652" i_stop="56409" i_length="1758">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56410" g_stop="56443" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="587" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E242602" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53884" e_stop="54156"/>
          <exon e_start="54237" e_stop="54447"/>
          <exon e_start="54583" e_stop="54651"/>
          <exon e_start="56410" e_stop="56443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAGGTCAGCTGAATCAGCATTATCAGATATCTTTGTTATGACATCTATATTTTTCTTATCTTGAATGTTGTATTTGCAACCAGGTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAGGTAGTACTGCTTTTTAGCAACATCTTCCTCTCTTTCTCCCTCGTCTTTTTGAAGGGAAGGGATATAGCGTTGTGTAAATTCAGTAATATTTGTCCATTCTGCTATTATTGATGACTTAATTATCTCTCGTGTCAGATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAGGTAAATCTACTAACTAATACTTAGGAGTATTTATTTTGCTTCCAAAACTATGTGATGATCATCTATGTTTTTCTTTAATGCAAAAATTTACCAATTCGTTCTCTTAACAGCAACTTGAATTGCACAGCAAATTTGAGCAGCCTTAACCTTTAAATCCAAAACTGCAAATGTAATTGTCAATATCTATAATTATTTGTGCTTCACGTAAACTGTGCCTGTATAGAGTCACAAAGTATAGCCCGTGGTGTCAATCCTTGTTGTTTGAGTGTTATGGTAAGAAAGTGGGTTAACTTAACTATTCCGTCTGTTCGTGATTATGATAAAAAAACAGAGATTTTGACGTTGAGATTGAGGTTTCGTAGGTAAAGCTTATTTGTCATTCAACAGAAGGTAGCATGTGTGCGCTTCTCCGGGAATGAATTGTAATGATGAAGCGTCTTTGGTTCCAATGAGTCTTTGGGATGGCACAACTTTTTGAGATTTTCCTGCTCTTTCTGGCAATTGGAAACACCCCCATTTATGCTACCCATTTTAGAGGTGCTTGATGTGCCTGGTCAGTTTTCCCCTTAGACTTAGAGCGAAGAAGAGAGGGGCTTTGTATAGACACTATTGAGCCATGTTCGTACCCTAGGCTTACCTTTATTTCATTTATAGAGGAAGCATTCATAGGGATAAATAGGTACCCTGTGGAATTAGTCGAGGTGCCCGCAAGCTGACTTGGACACCTTTTTCTTTAGTTATATTTATATTAGTTTTTGGACTAGCTCAGAATAATCTTGTCCGGGACAATTGTCCCTCTTTCTTCTCCTTCATCACTGCTTCTTTTCTAGTGGACTTCTATGCTTATGGACTATGGTTGGTCATCAAATTTGGAGAAAAAGAACTTGATGTAAGTTGAGAAAATCCAACGTCGAGCTCATTCCATACCCATTTTATTATCATATTTAACAATTGAACCAACAGCCTAATTGAAGGATCAATTGCATGTCCTTTGTATAACAATTTTTTTGCTGGCTTTTCCATTTGAAAGAATTAGTGATCATGCTGATAATGTAAAGTAATCTCTATTTGAGCTGAAAACTTCCTGTTCCATATCAATCTTCCTTTAAATTTCTTTCGTAGTTCCGTATATGCATTTAGTTATACGTGTGTTTTTCTTCGTTTCAATGCCTCCCTCCAAAATGTCAAAGTGGGACAGTTAGAGAAAGAGGCATTTCATTCTCCCCTTTTTCCATATATGGCACATGGCTTTGTGGTGGTTATCCAGTCTCTATCAGCCAGTTGTATAGAACACCCTTTCGGCCCTTATTAGGGGCCTAGATGCTTCATATTTGTATCAAAATTATTAATGGAAGTGGAAGTCATGTAAGGAAAGCTCACGGAACTTTTAAGGCGTCTTTTTTTTGATAACCATGGTGTCCAAGCCAACTTGAACACACCTTGACTAAATCCACGGGATGTCTGTCACCTTTATCCACCAAGACTAGGAACCTATGAGGATAAATCATGTAGTGTTTTTTCTTTTTGTCTTTGCTTGGATTTAAACCGAAGAACTCATGGTTCTCATGCACTTCGTTGACCACTATGCCACACCTGTGGGTGCACTTTTAAAGCGTCTTTGTCGCATATATTCTAAACAACAACTTATTGATGTTTGAAATTTTCTTTGCTTATGTACCATCAACTCTTAAATTGCTAACCTTTAATGATCTCTTAGTCTCTTTCACTACCTAACTGGCTCTTTATGTCATCCTACAGGCAGCTGATAAGGAAGAAGCATGTACTGGTAGCA</genome_strand>
        <mrna_strand>TGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCAAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAG................................................................................GTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAG.......................................................................................................................................ATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGATAAGGAAGAAGCATGTACTGGTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264937" ref_strand="+" ref_description="SGN-E264937 [cLEI-10-D21]">
      <seq>tcatttgagtgtgtcctctttcaaaactattgacgggcgaggccaaaaaatcaaactcactgggaaagggttgaggttgaaagaatgtgaacatgttattatctgcaatctagagtttgagggaggtagaggacatgatgttgatggcattcagattaaaccaaaatcgaggcatatttggatagatcgttgtagccttagcgactatgacgatggtttaattgacatcacaaaagagagcacagatattactgtttctaggtgtcacttttcaaagcatgacaaaacaatgcttattggaggagattcttctaattgtggtgacagatgtatgagggtcaccattcaccattgtttttttgacggaactagacagcggcatcctcgtgttaggtttgccaaagtacatttgtacaataactacactaggaactggggaatttatgctgtttgtgctagtgtagaatcacagatatattcacaatgcaatatatatgaagctggacaaaaaaaggtggccttcaaatatctaacagagaaggcagctgataaggaagaagcatgtactggtagcattaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="53596" stop="56752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53896" g_stop="54156" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54157" i_stop="54236" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54237" g_stop="54447" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="472" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54448" i_stop="54582" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54583" g_stop="54651" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="541" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54652" i_stop="56409" i_length="1758">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56410" g_stop="56452" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="584" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E264937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53896" e_stop="54156"/>
          <exon e_start="54237" e_stop="54447"/>
          <exon e_start="54583" e_stop="54651"/>
          <exon e_start="56410" e_stop="56452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAGGTCAGCTGAATCAGCATTATCAGATATCTTTGTTATGACATCTATATTTTTCTTATCTTGAATGTTGTATTTGCAACCAGGTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAGGTAGTACTGCTTTTTAGCAACATCTTCCTCTCTTTCTCCCTCGTCTTTTTGAAGGGAAGGGATATAGCGTTGTGTAAATTCAGTAATATTTGTCCATTCTGCTATTATTGATGACTTAATTATCTCTCGTGTCAGATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAGGTAAATCTACTAACTAATACTTAGGAGTATTTATTTTGCTTCCAAAACTATGTGATGATCATCTATGTTTTTCTTTAATGCAAAAATTTACCAATTCGTTCTCTTAACAGCAACTTGAATTGCACAGCAAATTTGAGCAGCCTTAACCTTTAAATCCAAAACTGCAAATGTAATTGTCAATATCTATAATTATTTGTGCTTCACGTAAACTGTGCCTGTATAGAGTCACAAAGTATAGCCCGTGGTGTCAATCCTTGTTGTTTGAGTGTTATGGTAAGAAAGTGGGTTAACTTAACTATTCCGTCTGTTCGTGATTATGATAAAAAAACAGAGATTTTGACGTTGAGATTGAGGTTTCGTAGGTAAAGCTTATTTGTCATTCAACAGAAGGTAGCATGTGTGCGCTTCTCCGGGAATGAATTGTAATGATGAAGCGTCTTTGGTTCCAATGAGTCTTTGGGATGGCACAACTTTTTGAGATTTTCCTGCTCTTTCTGGCAATTGGAAACACCCCCATTTATGCTACCCATTTTAGAGGTGCTTGATGTGCCTGGTCAGTTTTCCCCTTAGACTTAGAGCGAAGAAGAGAGGGGCTTTGTATAGACACTATTGAGCCATGTTCGTACCCTAGGCTTACCTTTATTTCATTTATAGAGGAAGCATTCATAGGGATAAATAGGTACCCTGTGGAATTAGTCGAGGTGCCCGCAAGCTGACTTGGACACCTTTTTCTTTAGTTATATTTATATTAGTTTTTGGACTAGCTCAGAATAATCTTGTCCGGGACAATTGTCCCTCTTTCTTCTCCTTCATCACTGCTTCTTTTCTAGTGGACTTCTATGCTTATGGACTATGGTTGGTCATCAAATTTGGAGAAAAAGAACTTGATGTAAGTTGAGAAAATCCAACGTCGAGCTCATTCCATACCCATTTTATTATCATATTTAACAATTGAACCAACAGCCTAATTGAAGGATCAATTGCATGTCCTTTGTATAACAATTTTTTTGCTGGCTTTTCCATTTGAAAGAATTAGTGATCATGCTGATAATGTAAAGTAATCTCTATTTGAGCTGAAAACTTCCTGTTCCATATCAATCTTCCTTTAAATTTCTTTCGTAGTTCCGTATATGCATTTAGTTATACGTGTGTTTTTCTTCGTTTCAATGCCTCCCTCCAAAATGTCAAAGTGGGACAGTTAGAGAAAGAGGCATTTCATTCTCCCCTTTTTCCATATATGGCACATGGCTTTGTGGTGGTTATCCAGTCTCTATCAGCCAGTTGTATAGAACACCCTTTCGGCCCTTATTAGGGGCCTAGATGCTTCATATTTGTATCAAAATTATTAATGGAAGTGGAAGTCATGTAAGGAAAGCTCACGGAACTTTTAAGGCGTCTTTTTTTTGATAACCATGGTGTCCAAGCCAACTTGAACACACCTTGACTAAATCCACGGGATGTCTGTCACCTTTATCCACCAAGACTAGGAACCTATGAGGATAAATCATGTAGTGTTTTTTCTTTTTGTCTTTGCTTGGATTTAAACCGAAGAACTCATGGTTCTCATGCACTTCGTTGACCACTATGCCACACCTGTGGGTGCACTTTTAAAGCGTCTTTGTCGCATATATTCTAAACAACAACTTATTGATGTTTGAAATTTTCTTTGCTTATGTACCATCAACTCTTAAATTGCTAACCTTTAATGATCTCTTAGTCTCTTTCACTACCTAACTGGCTCTTTATGTCATCCTACAGGCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTG</genome_strand>
        <mrna_strand>TCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAG................................................................................GTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAG.......................................................................................................................................ATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379151" ref_strand="+" ref_description="SGN-E379151 [TUS-3-M15](-)">
      <seq>ccgatttgcttggttgattctcattcttctctgcaaactcgacggcaaagcaaagcactacaaggacgtttcactcgcgtacctcttcttagcaaacaatctccgatacatcgtcgtaaaagtccgttcatcgaatctcaagtacttgctaggtgaaaattggatatcaaaacaagagcaaaaaatcaaaaagtttgcctccaattatgaacaactaggatggagccacgtaatccaatctctaccgcgagaaccaaacgcctcaatgactccacaacaagtgaaagaaatattcaagagattcaattcatcattcgagcaagttcatcggaagcaatctctctacgtcgtaccaaatagtaagctccgagatgatttgaaagtgtcgattgcaaggaaaatacttccggtgtatagagagttttacaatatacataaaaatacgatagcaaaagagagatattcgagtcatgtgatcaaatattctccggaagatttagcacattatttgtccgatttattttttggaccgattgaattgggaagttcatcgtcaggggagtcatccccatcacgtacaataccatcacaactgcagtgaaatttttttttagaggaattgtttatttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="75108" stop="73874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74808" g_stop="74174" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E379151" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74808" e_stop="74174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGTTGAGTCATCCCCATCACGTACAATACCATCACAACTGCAGTGAAATTTTTTTTTAGAGTAATTGTTTATTTTTCTTT</genome_strand>
        <mrna_strand>CCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGGGGAGTCATCCCCATCACGTACAATACCATCACAACTGCAGTGAAATTTTTTTTTAGAGGAATTGTTTATTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304697" ref_strand="+" ref_description="SGN-E304697 [cLEX-11-B19]">
      <seq>cggcaccggcaatctcactccgatttgcttggttgattctcattcttctctgcaaactcgacggcaaagcaaagcactacaaggacgtttcactcgcgtacctcttcttagcaaacaatctccgatacatcgtcgtaaaagtccgttcatcgaatctcaagtacttgctaggtgaaaattggatatcaaaacaagagcaaaaaatcaaaaagtttgcctccaattatgaacaactaggatggagccacgtaatccaatctctaccgcgagaaccaaacgcctcaatgactccacaacaagtgaaagaaatattcaagagattcaattcatcattcgagcaagttcatcggaagcaatctctctacgtcgtaccaaatagtaagctccgagatgatttgaaagtgtcgattgcaaggaaaatacttccggtgtatagagagttttacaatatacataaaaatacgatagcaaaagagagatattcgagtcatgtgatcaaatattctccggaagatttagcacattatttgtccgatttattttttggaccgattgaattgggaagttcatcgtcagttgagtcatccccatcacgtacaataccatcacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="75127" stop="73915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74827" g_stop="74215" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E304697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74827" e_stop="74215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGTTGAGTCATCCCCATCACGTACAATACCATCACAACT</genome_strand>
        <mrna_strand>CGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGTTGAGTCATCCCCATCACGTACAATACCATCACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210594" ref_strand="+" ref_description="SGN-E210594 [cLEC-68-G5]">
      <seq>tttggctgaatttgaaaccgctcttcaaaaggaatcgtctaagacgacagttgccggcggtggaatccatgctctcactattgacacaatgaattacatcattctacttgccgactacagctacgtactctctgacatccttgatgagtctcctcctccggctaaaagttcattgcctgaatcatatttcggtatggctgattccgatgagtctccggcaccggcaatctcactccgatttgcttggttgattctcattcttctctgcaaactcgacggcaaagcaaagcactacaaggacgtttcactcgcgtacctcttcttagcaaacaatctccgatacatcgtcgtaaaagtccgttcatcgaatctcaagtacttgctaggtgaaaattggatatcaaaacaagagcaaaaaatcaaaaagtttgcctccaattatgaacaactaggatggagccacgtaatccaatctctaccgcgagaaccaaacgcctcaatgactccacaacaagtgaaagaaatattcaagagattcaattcatcattcgagcaagttcatcggaagcaatctctctacgtcgtaccaaatagtaagctccgagatgatttgaaagtgtcgattgcaaggaaaatacttccggtgtatagagaagttttacatatacataaaaatacgatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="75342" stop="74059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75042" g_stop="74359" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E210594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75042" e_stop="74359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGATGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAG-AGTTTTACAATATACATAAAAATACGATAGC</genome_strand>
        <mrna_strand>TTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGATGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAAGTTTTAC-ATATACATAAAAATACGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745069" ref_strand="+" ref_description="SGN-E745069 [GI|68449763]">
      <seq>tcaaaagatggagctatgattctgtttagctttccagaaattgtggcgaaaaacagtaagaagtcgccagaaaaagtgttccgtatgcttgatatgtacaattcaatcgtcgaacactggacggagattgaaactacattcgaatctgctatccgatctcaagcgatgacgtctctcgttaagcttggtgagtttataaggatggctttggctgaatttgaaaccgctcttcaaaaggaatcgtctaagacgacagttgccggcggtggaatccatgctctcactattgacacaatgaattacatcattctacttgccgactacagctacgtactctctgacatccttggtgagtctcctcctccggctaaaagttcattgcctgaatcatatttcggtatggctgattccgatgagtctccggcaccggcaatctcactccgatttgcttggttgattctcattcttctctgcaaactcgacggcaaagcaaagcactacaaggacgtttcactcgcgtacctcttcttagcaaacaatctccgatacatcgtcgtaaaagtccgttcatcgaatctcaagtacttgctaggtgaaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="75548" stop="74346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75248" g_stop="74646" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E745069" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75248" e_stop="74646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGATGGAGCTATGATTCTGTTTAGCTTTCCAGAAATTGTGGCGAAAAACAGTAAGAAGTCGCCAGAAAAAGTGTTCCGTATTCTTGATATGTACAATTCAATCGTCGAACACTGGACGGAGATTGAAACTACATTCGAATCTGCTATCCGATCTCAAGCGATGACGTCTCTCGTTAAGCTTGGTGAGTTTATAAGGATGGCTTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGATGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGG</genome_strand>
        <mrna_strand>TCAAAAGATGGAGCTATGATTCTGTTTAGCTTTCCAGAAATTGTGGCGAAAAACAGTAAGAAGTCGCCAGAAAAAGTGTTCCGTATGCTTGATATGTACAATTCAATCGTCGAACACTGGACGGAGATTGAAACTACATTCGAATCTGCTATCCGATCTCAAGCGATGACGTCTCTCGTTAAGCTTGGTGAGTTTATAAGGATGGCTTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGGTGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378862" ref_strand="+" ref_description="SGN-E378862 [TUS-3-M15]">
      <seq>attttactctactcttcatttatacatccaaaaactatataccaaatttttttgattatttcgctatcgcaataacaaaatccactcaattatttctcaaaacataacacgaaaatcatgccgagaaaaggaatgagaacactgaattggttttcaccaaaacacaattcagcaactgatgttaattctccatctacttcacaattctcatctccttcccgattcgccttttcgccatccagaccgagtttttctgaagcagtgattgatcgaacgatcgagatggctgagcagatgatcacgaaatgggatcctgatactaccaccttcgcgaaggtgacttctctgttctatgaaaatcgaaaagaagctaaggatttcattaaatatgtgaataatctacataaggctatgcattttcatgctagtgagaattccagatctgataagcttgttcgtgctcaatcgttgatgcaaatcgcgatgaaacgactgcagaaggagttttatcagattttatcaatcaacagagcacttttggatcctgaatctatatccactgtgtcttcacgtacttcgataagtactcgatcgagtacctctgaatttaacgttgaagatgatgatgataatcgtgttgcaattgctggtgaatctattaatgaagttgaggatatttctaatggtgtaatggcggatttgagattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="76541" stop="75232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76241" g_stop="75532" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E378862" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76241" e_stop="75532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTAATGTTGTAATGGCGGATTTGAGATTGAT</genome_strand>
        <mrna_strand>ATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTAATGGTGTAATGGCGGATTTGAGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214337" ref_strand="+" ref_description="SGN-E214337 [cLEC-77-C15]">
      <seq>tcattttactctactcttcatttatacatccaaaaactatataccaaatttttttgattatttcgctatcgcaataacaaaatccactcaattatttctcaaaacataacacgaaaatcatgccgagaaaaggaatgagaacactgaattggttttcaccaaaacacaattcagcaactgatgttaattctccatctacttcacaattctcatctccttcccgattcgccttttcgccatccagaccgagtttttctgaagcagtgattgatcgaacgatcgagatggctgagcagatgatcacgaaatgggatcctgatactaccaccttcgcgaaggtgacttctctgttctatgaaaatcgaaaagaagctaaggatttcattaaatatgtgaataatctacataaggctatgcattttcatgctagtgagaattccagatctgataagcttgttcgtgctcaatcgttgatgcaaatcgcgatgaaacgactgcagaaggagttttatcagattttatcaatcaacagagcacttttggatcctgaatctatatccactgtgtcttcacgtacttcgataagtactcgatcgagtacctctgaatttaacgttgaagatgatgatgataatcgtgttgcaattgctggtgaatctattaatgaagttgaggatatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="76543" stop="75260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76243" g_stop="75560" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E214337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76243" e_stop="75560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTA</genome_strand>
        <mrna_strand>TCATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207868" ref_strand="+" ref_description="SGN-E207868 [cLEC-34-I17]">
      <seq>attttactctactcttcatttatacatccaaaaactatataccaaatttttttgattatttcgctatcgcaataacaaaatccactcaattatttctcaaaacataacacgaaaatcatgccgagaaaaggaatgagaacactgaattggttttcaccaaaacacaattcagcaactgatgttaattctccatctacttcacaattctcatctccttcccgattcgccttttcgccatccagaccgagtttttctgaagcagtgattgatcgaacgatcgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="76541" stop="75658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76241" g_stop="75958" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-E207868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76241" e_stop="75958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGAT</genome_strand>
        <mrna_strand>ATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316610" ref_strand="+" ref_description="SGN-E316610 [cTOA-25-N4]">
      <seq>ttttttttcatcttcttcaaacaattcttgtcaccttaaaaacactcaaaaatcatacaaattttcagttacaaatcttgaatttttttccacttttaccatttccccattcttgatttgcaaaaaaagctatgaaattgtacaaacagtcaagtagaagagatgaggatttacccaattctcaaccatactcaccaaagaccttgaaatacccaagaggatctcttcccagatccatcaattatctcctcaaagaacaaagacttctgttcattcttgttggtattctaattggttcaacttttttcatcattcaacctagtctatctcatcttagcacatcttctgaaccacattcttcaatacccagatcatataatgctttaaatcatgaatctttatcaaaattagcttcatataatgataaagatgtaagctttagggtgaatggggttactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="89744" stop="90803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90044" g_stop="90503" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E316610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90044" e_stop="90503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCATCTTCTTCAAACAATTCTTGTCACCTTAAAAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAAGAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGG</genome_strand>
        <mrna_strand>TTTTTTTTCATCTTCTTCAAACAATTCTTGTCACCTTAAAAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAAGAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203601" ref_strand="+" ref_description="SGN-E203601 [cLEC-15-E10]">
      <seq>aaacactcaaaaatcatacaaattttcagttacaaatcttgaatttttttccacttttaccatttccccattcttgatttgcaaaaaaagctatgaaattgtacaaacagtcaagtagaacagatgaggatttacccaattctcaaccatactcaccaaagaccttgaaatacccaagaggatctcttcccagatccatcaattatctcctcaaagaacaaagacttctgttcattcttgttggtattctaattggttcaacttttttcatcattcaacctagtctatctcatcttagcacatcttctgaaccacattcttcaatacccagatcatataatgctttaaatcatgaatctttatcaaaattagcttcatataatgataaagatgtaagctttagggtgaatggggttactgggagggttccagttggggttgggaggaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="89783" stop="90835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90083" g_stop="90535" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E203601" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90083" e_stop="90535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAAGAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGA</genome_strand>
        <mrna_strand>AAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAACAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709764" ref_strand="+" ref_description="SGN-E709764 [FA53AC01]">
      <seq>cgttaagctttagggtgaatggggttactgggagggttccagttggggttgggaggaaaaggatgaggattgtggtgactggtggtgctggatttgtggggagtcatttagtggataagttgattaagagaggtgatgatgttattgtgattgataatttctttactggtaggaaagaaaatgtgaaacatcattttgggaatccaagatttgagcttattaggcatgatgttgttgagcctatcttgttagaagtagatcagatttaccatttggcttgtcctgcttctccagttcactacaagtataatcctgtcaaaactattaagacaaatgtgatgggcacccttaacatgttggggcttgccaagagaattggtgctaagttcttgcttaccagtacaagtgaggtttatggtgatccgcttgagcatcctcaaaaggaaacatattggggtcatgtgaatccaataggtgttaggagctgctatgacgagggaaaacggactgcggaaaccttgactatggattaccatcgcggtgcaaatgtcgaggttcgtattgctcggattttcaatacatacggacctcgtatgtgtttagatgatggacgtgttgtcagcaactttgttgcccaggccatccgcaagcaaccaatgacagtatatggtgatggaaagccaactcgaagttttcaattcgtctctgatctggttgatggattagtggccctcatggagggtgagcacattggccctttccacttgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="90172" stop="94375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90473" g_stop="90798" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90799" i_stop="91225" i_length="427">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91226" g_stop="91373" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="474" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91374" i_stop="91477" i_length="104">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91478" g_stop="91557" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="554" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91558" i_stop="92646" i_length="1089">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92647" g_stop="92730" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="638" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92731" i_stop="92812" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92813" g_stop="92887" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="713" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92888" i_stop="94229" i_length="1342">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94230" g_stop="94288" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="772" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E709764" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90473" e_stop="90798"/>
          <exon e_start="91226" e_stop="91373"/>
          <exon e_start="91478" e_stop="91557"/>
          <exon e_start="92647" e_stop="92730"/>
          <exon e_start="92813" e_stop="92887"/>
          <exon e_start="94230" e_stop="94288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGATGAGGATTGTGGTGACTGGTGGTGCTGGATTTGTGGGGAGTCATTTAGTGGATAAGTTGATTAAGAGAGGTGATGATGTTATTGTGATTGATAATTTCTTTACGGGTAGGAAAGAAAATGTGAAACATCATTTTGGGAATCCAAGATTTGAGCTTATTAGGCATGATGTTGTTGAGCCTATCTTGTTAGAAGTAGATCAGATTTACCATTTGGCTTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATTATATCCTTTTTTCTATTACTTCTTGTTATTCAGATTTATCAGGTTAATGTATAAACACCTCTTTTGTTTATGTGTATGTGTTGTGCCTTCATGATGCTTTAGTTCAATCTTACTGACTTGACTGCTATGTTGCTCGGACTCTCCAAAAATGCAGCTTCACCCATGCCGGATCCTCTAAAAAGGCAATACTTTTGATGGATCCGACACACACTGAGAGGCATATTTGAAGAGTCCGAGCAATATAGGAAATGAATGTTTGTTGATTTGCTTATTTAGTTTGTATAATCCTGTTAGAACTGTTGTAGTTAAATTTATTGGCTTTATGTATGAATACCTCTTTTGGTTACATTAGTTAATGTTATGGAAATGAGAGTTCTTTGACTAGTTTGTTGGATTTGAGTCATTTGAGATCCTTATCTGTGATTACAAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAGGTGTGCAACAACTAACGAATCGTGTTGTTTTCCTTTTTCCTTTTTGAAACAAGAAAAATATTTTGAGTTTATTTTAAAGATTTTGAGTGTCTTGAAACACCTAGGTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAGGTAATGAAGATTTGACTTTTTAGAAATAAGTTTAACATGTGATGGAGCTGAGTGCTTCTGTGCACAATTATCTGCTTTGTTGTGTGTTGTAAAAACTAAATGCAGCCTCCTTTGCTGAAATGCTGTGTGAATTTGCATCAGTTACTTGCCAATGCTTTTTATGTTTCAAAGAATGTCTGAACTTAGAAATTGGGGAGTAGGAGTAGTTATTTAATACCCATCTTGAGATTGAGCAGAAACATTCTTGAAACATAGAAAGCAATGTCAAGTAACTGATGCAAATTTGCAATCGCAAGGGTTCTCAAAGAATTAACAGCTAAGAAGAGAAAAAGAATTGTGAAGAAGCAAATAGCTAATGCTTTTTACCTTCATACTTTTCCCGAATCTTGTTACAGCTAATATACCCAAAGACTGAAAAAGACTTAAATGCAACTAAATAAAGTCATAACAGAACTATAAGGGACTAACAACAATCCCCTCTACACCATAATAATAACTAACTCAACAACCTTTTACTACTCTGCGAGCCACTGTACAACTCTAGTAAACGTGTATGTATCAGTAACAGAAGATAAATTTATGGTGTAAAGTTTTTCTGTGATGAATGGTACTTCTTTAAATGAAAAGTTCAAGTTGGAGGGGAGGAATACATACGGGTAAATGGCTTATTCTAAAACTAGGTCCTAGGAAGTTGCCTACATGTACATCAGAATCGTATGTTAACATGTGATATGCTTGCTCGCATTTATGATCTAAAACGAAGGTGTGTAGCTATCCATCCAACTTAATTTGTAGTGTTTCTATAGGAAAATTTGGAAAGTTCAACTTGAAACCTATTTTTTTGCTGGTTCTTGATTTTGAGAAGTTGAACAAAATGATGAGAGAGCATAGGATATAGGTAGCGAAGTAGCAAGTCGTTTCTTTCTTTTCAATAAGATTCAGTCTGAGTTCAGATTATGTATTTTGCTCTCCCCCTTTCCACTTGCAATAGTCAAACAGAGTCTTAAGTGGTACAGTAAGTGGTAATGTCAACTTGTATGTTTCTCATGGATTACCTTGAACTTTACACCTCCGAATCTTTGTATGCAGGTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCGCAGGTTTGTTCTATTAGCCCATGATATCATTTAGTTTAACTTGAGCTTGTTTTGGTATTTTGTTATTCTAAAACCATGTTTGCAGGCCATCCGCAAGCAACCAATGACAGTATATGGGGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTGGTACTTCATCTTGATGAGTTCTCTTCCCTCATTCCCCGTCTCTGCCTTAGCGTGTTACTTTTACCTATGTATATATGGACGTCAGATTGCAGTATAATTTATTGGTTGAAGGTGGTCAAGGGTAGCTATAGCCTTTAGCAGGTGTTAGTTTTCTTGAAGTGATTTGTTCACTGTTAGTATGGATGGTAGTGAAATTAGCCTTGAGTTCTTTGGGACGTAAATATATATTGCCTGTGTTTTGAACTTCATATGAAAATCCTTCCAATCGTTTAGATGAAAAATAACTGTAGAAGTTGTAACTCATATTATGAGCAACTGGCTTTGCTCTCCTGGTTGGAACCTACGTCCTTTTCTAGCTCTACATCTTGCTTTCTGTTAAGTTGTTAAGTTTGCATCACAATACAGTGCAGTAAAATTCTAGAACTGGGCAAGAGGTTCATTGAAAAGAGAAAATATTTTGCTAGAATTAGAAGATGTATGTTCTCCCTATCAATGAACTTCAAAATTTTAGTGGTTAATGCACTTCAAAATCTTAGTGACCTAGTGGTTAAGCACCATGAGGTCTCAAATTCCATCTAAAGTACACTGTAGAGAATATACAAGATAGAATAATGTAAGTTCAGCTCTAGGAAAATTAAAGGTGAAGTAAGATATATGAGATTTTGGTGCCTTAATGTAGATGATTGGATATCCAGGCACAGTGATCCCAGAAAATGGCACGATAGTTGCATATGTAATACACTATAAAAATAATAGGCCAGCGGTGATATGGAAGTGACATGTTGAGCTTAAGAACAATGTTATATTAGAGCAAATATTGAACCTCTAAACTCCCAACATATCTACAAGATAAATGTCAAATGTTAAGATAGAAATGCAGTTCAAGATTGGATGAGATTTGAAAGAATGACACTCCACATTGGGTGAGAGTTGCATACATGAATGATAAATTGACTGAAGTTCGCCTGAGAAGGTTTGGCTTGCTCGGTCAGTAGATACGACTATATGATAGTTGGAGGCAGCAAAATGGGAACGCGATGGACCTAAAATCACGTCGAGGGGACTTGTCTCTACAGGCTTACGAGCTATCAAAACTAATGTGGACTCTGCCAAGTGAAGCACAAATTGGAAGAAAATAATTCATATAGGCCATTCCAGCTAGTTTTGAGATTAAAGTCATTCTTACTCTTTACATTAACTCGAATGTTCATCAAAAGCTTTTTTTTTTGTCTCTTATTTGTTCTGATTGGAGAGTTGTATGTGTGTATTTGATCAATGTGAGATCTAAAGAAGTAGCTTGGAAGACCCATATTAAAGATAATTAGCTTCATTTTGATTAAAGGTTGATGGATTAGTGGCCCTCATGGATGGTGAGCACATTGGCCCTTTCAACTTGGGAAA</genome_strand>
        <mrna_strand>CGTTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGATGAGGATTGTGGTGACTGGTGGTGCTGGATTTGTGGGGAGTCATTTAGTGGATAAGTTGATTAAGAGAGGTGATGATGTTATTGTGATTGATAATTTCTTTACTGGTAGGAAAGAAAATGTGAAACATCATTTTGGGAATCCAAGATTTGAGCTTATTAGGCATGATGTTGTTGAGCCTATCTTGTTAGAAGTAGATCAGATTTACCATTTGGCTTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAG........................................................................................................GTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCCCAG..................................................................................GCCATCCGCAAGCAACCAATGACAGTATATGGTGATGGAAAGCCAACTCGAAGTTTTCAATTCGTCTCTGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGATTAGTGGCCCTCATGGAGGGTGAGCACATTGGCCCTTTCCACTTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729637" ref_strand="+" ref_description="SGN-E729637 [LA21CF03]">
      <seq>gttgggaggaaaaggatgaggattgtggtgactggtggtgctggatttgtggggagtcatttagtggataagttgattaagagaggtgatgatgttattgtgattgataatttctttactggtaggaaagaaaatgtgaaacatcattttgggaatccaagatttgagcttattaggcatgatgttgttgagcctatcttgttacaagtaaatcagatttaccatttggcttgtcctgcttctccagttcactacaagtataatcctgtcaaaactattaagacaaatgtgatgggcacccttaacatgttggggcttgccaagagaattggtgctaagttcttgcttaccagtacaagtgaggtttatggtgatccgcttgagcatcctcaaaaggaaacatattggggtcatgtgaatccaataggtgttaggagctgctatgacgagggaaaacggactgcggaaaccttgactatggattaccatcgcggtgcaaatgtcgaggttcgtattgctcggattttcaatacatacggacctcgtatgtgtttagatgatggacgtgttgtcagcaactttgttgcccaggccatccgcaagcaaccaatgacagtatatggtgatggaaagcaaactcgaagttttcaattcgtctctgatctggttgatggattagtggccctcatggagggtgagcacattggccctttcaacttgggaaatccaggagaatttaccatgttggagcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="90220" stop="94375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90520" g_stop="90798" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90799" i_stop="91225" i_length="427">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91226" g_stop="91373" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="427" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91374" i_stop="91477" i_length="104">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91478" g_stop="91557" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="507" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91558" i_stop="92646" i_length="1089">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92647" g_stop="92730" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="591" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92731" i_stop="92812" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92813" g_stop="92887" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="666" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92888" i_stop="94229" i_length="1342">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94230" g_stop="94319" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="756" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E729637" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90520" e_stop="90798"/>
          <exon e_start="91226" e_stop="91373"/>
          <exon e_start="91478" e_stop="91557"/>
          <exon e_start="92647" e_stop="92730"/>
          <exon e_start="92813" e_stop="92887"/>
          <exon e_start="94230" e_stop="94319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGAGGAAAAGGATGAGGATTGTGGTGACTGGTGGTGCTGGATTTGTGGGGAGTCATTTAGTGGATAAGTTGATTAAGAGAGGTGATGATGTTATTGTGATTGATAATTTCTTTACGGGTAGGAAAGAAAATGTGAAACATCATTTTGGGAATCCAAGATTTGAGCTTATTAGGCATGATGTTGTTGAGCCTATCTTGTTAGAAGTAGATCAGATTTACCATTTGGCTTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATTATATCCTTTTTTCTATTACTTCTTGTTATTCAGATTTATCAGGTTAATGTATAAACACCTCTTTTGTTTATGTGTATGTGTTGTGCCTTCATGATGCTTTAGTTCAATCTTACTGACTTGACTGCTATGTTGCTCGGACTCTCCAAAAATGCAGCTTCACCCATGCCGGATCCTCTAAAAAGGCAATACTTTTGATGGATCCGACACACACTGAGAGGCATATTTGAAGAGTCCGAGCAATATAGGAAATGAATGTTTGTTGATTTGCTTATTTAGTTTGTATAATCCTGTTAGAACTGTTGTAGTTAAATTTATTGGCTTTATGTATGAATACCTCTTTTGGTTACATTAGTTAATGTTATGGAAATGAGAGTTCTTTGACTAGTTTGTTGGATTTGAGTCATTTGAGATCCTTATCTGTGATTACAAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAGGTGTGCAACAACTAACGAATCGTGTTGTTTTCCTTTTTCCTTTTTGAAACAAGAAAAATATTTTGAGTTTATTTTAAAGATTTTGAGTGTCTTGAAACACCTAGGTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAGGTAATGAAGATTTGACTTTTTAGAAATAAGTTTAACATGTGATGGAGCTGAGTGCTTCTGTGCACAATTATCTGCTTTGTTGTGTGTTGTAAAAACTAAATGCAGCCTCCTTTGCTGAAATGCTGTGTGAATTTGCATCAGTTACTTGCCAATGCTTTTTATGTTTCAAAGAATGTCTGAACTTAGAAATTGGGGAGTAGGAGTAGTTATTTAATACCCATCTTGAGATTGAGCAGAAACATTCTTGAAACATAGAAAGCAATGTCAAGTAACTGATGCAAATTTGCAATCGCAAGGGTTCTCAAAGAATTAACAGCTAAGAAGAGAAAAAGAATTGTGAAGAAGCAAATAGCTAATGCTTTTTACCTTCATACTTTTCCCGAATCTTGTTACAGCTAATATACCCAAAGACTGAAAAAGACTTAAATGCAACTAAATAAAGTCATAACAGAACTATAAGGGACTAACAACAATCCCCTCTACACCATAATAATAACTAACTCAACAACCTTTTACTACTCTGCGAGCCACTGTACAACTCTAGTAAACGTGTATGTATCAGTAACAGAAGATAAATTTATGGTGTAAAGTTTTTCTGTGATGAATGGTACTTCTTTAAATGAAAAGTTCAAGTTGGAGGGGAGGAATACATACGGGTAAATGGCTTATTCTAAAACTAGGTCCTAGGAAGTTGCCTACATGTACATCAGAATCGTATGTTAACATGTGATATGCTTGCTCGCATTTATGATCTAAAACGAAGGTGTGTAGCTATCCATCCAACTTAATTTGTAGTGTTTCTATAGGAAAATTTGGAAAGTTCAACTTGAAACCTATTTTTTTGCTGGTTCTTGATTTTGAGAAGTTGAACAAAATGATGAGAGAGCATAGGATATAGGTAGCGAAGTAGCAAGTCGTTTCTTTCTTTTCAATAAGATTCAGTCTGAGTTCAGATTATGTATTTTGCTCTCCCCCTTTCCACTTGCAATAGTCAAACAGAGTCTTAAGTGGTACAGTAAGTGGTAATGTCAACTTGTATGTTTCTCATGGATTACCTTGAACTTTACACCTCCGAATCTTTGTATGCAGGTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCGCAGGTTTGTTCTATTAGCCCATGATATCATTTAGTTTAACTTGAGCTTGTTTTGGTATTTTGTTATTCTAAAACCATGTTTGCAGGCCATCCGCAAGCAACCAATGACAGTATATGGGGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTGGTACTTCATCTTGATGAGTTCTCTTCCCTCATTCCCCGTCTCTGCCTTAGCGTGTTACTTTTACCTATGTATATATGGACGTCAGATTGCAGTATAATTTATTGGTTGAAGGTGGTCAAGGGTAGCTATAGCCTTTAGCAGGTGTTAGTTTTCTTGAAGTGATTTGTTCACTGTTAGTATGGATGGTAGTGAAATTAGCCTTGAGTTCTTTGGGACGTAAATATATATTGCCTGTGTTTTGAACTTCATATGAAAATCCTTCCAATCGTTTAGATGAAAAATAACTGTAGAAGTTGTAACTCATATTATGAGCAACTGGCTTTGCTCTCCTGGTTGGAACCTACGTCCTTTTCTAGCTCTACATCTTGCTTTCTGTTAAGTTGTTAAGTTTGCATCACAATACAGTGCAGTAAAATTCTAGAACTGGGCAAGAGGTTCATTGAAAAGAGAAAATATTTTGCTAGAATTAGAAGATGTATGTTCTCCCTATCAATGAACTTCAAAATTTTAGTGGTTAATGCACTTCAAAATCTTAGTGACCTAGTGGTTAAGCACCATGAGGTCTCAAATTCCATCTAAAGTACACTGTAGAGAATATACAAGATAGAATAATGTAAGTTCAGCTCTAGGAAAATTAAAGGTGAAGTAAGATATATGAGATTTTGGTGCCTTAATGTAGATGATTGGATATCCAGGCACAGTGATCCCAGAAAATGGCACGATAGTTGCATATGTAATACACTATAAAAATAATAGGCCAGCGGTGATATGGAAGTGACATGTTGAGCTTAAGAACAATGTTATATTAGAGCAAATATTGAACCTCTAAACTCCCAACATATCTACAAGATAAATGTCAAATGTTAAGATAGAAATGCAGTTCAAGATTGGATGAGATTTGAAAGAATGACACTCCACATTGGGTGAGAGTTGCATACATGAATGATAAATTGACTGAAGTTCGCCTGAGAAGGTTTGGCTTGCTCGGTCAGTAGATACGACTATATGATAGTTGGAGGCAGCAAAATGGGAACGCGATGGACCTAAAATCACGTCGAGGGGACTTGTCTCTACAGGCTTACGAGCTATCAAAACTAATGTGGACTCTGCCAAGTGAAGCACAAATTGGAAGAAAATAATTCATATAGGCCATTCCAGCTAGTTTTGAGATTAAAGTCATTCTTACTCTTTACATTAACTCGAATGTTCATCAAAAGCTTTTTTTTTTGTCTCTTATTTGTTCTGATTGGAGAGTTGTATGTGTGTATTTGATCAATGTGAGATCTAAAGAAGTAGCTTGGAAGACCCATATTAAAGATAATTAGCTTCATTTTGATTAAAGGTTGATGGATTAGTGGCCCTCATGGATGGTGAGCACATTGGCCCTTTCAACTTGGGAAATCCAGGAGAATTTACCATGTTGGAGCTTGCT</genome_strand>
        <mrna_strand>GTTGGGAGGAAAAGGATGAGGATTGTGGTGACTGGTGGTGCTGGATTTGTGGGGAGTCATTTAGTGGATAAGTTGATTAAGAGAGGTGATGATGTTATTGTGATTGATAATTTCTTTACTGGTAGGAAAGAAAATGTGAAACATCATTTTGGGAATCCAAGATTTGAGCTTATTAGGCATGATGTTGTTGAGCCTATCTTGTTACAAGTAAATCAGATTTACCATTTGGCTTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAG........................................................................................................GTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCCCAG..................................................................................GCCATCCGCAAGCAACCAATGACAGTATATGGTGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGATTAGTGGCCCTCATGGAGGGTGAGCACATTGGCCCTTTCAACTTGGGAAATCCAGGAGAATTTACCATGTTGGAGCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210019" ref_strand="+" ref_description="SGN-E210019 [cLEC-40-J6]">
      <seq>ttgtcctgcttctccagttcactacaagtataatcctgtcaaaactattaagacaaatgtgatgggcacccttaacatgttggggcttgccaagagaattggtgctaagttcttgcttaccagtacaagtgaggtttatggtgatccgcttgagcatcctcaaaaggaaacatattggggtcatgtgaatccaataggtgttaggagctgctatgacgagggaaaacggactgcggaaaccttgactatggattaccatcgcggtgcaaatgtcgaggttcgtattgctcggattttcaatacatacggacctcgtatgtgtttagatgatggacgtgttgtcagcaactttgttgcgcaggccatccgcaagcaaccaatgacagtatatggggatggaaagcaaactcgaagttttcaattcgtctctgatctggttgatggattagtggccctcatggatggtgagcacattggccctttcaacttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="90450" stop="94375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90750" g_stop="90798" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90799" i_stop="91225" i_length="427">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91226" g_stop="91373" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="197" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91374" i_stop="91477" i_length="104">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91478" g_stop="91557" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="277" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91558" i_stop="92646" i_length="1089">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92647" g_stop="92730" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="361" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92731" i_stop="92812" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92813" g_stop="92887" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92888" i_stop="94229" i_length="1342">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94230" g_stop="94286" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="493" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E210019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90750" e_stop="90798"/>
          <exon e_start="91226" e_stop="91373"/>
          <exon e_start="91478" e_stop="91557"/>
          <exon e_start="92647" e_stop="92730"/>
          <exon e_start="92813" e_stop="92887"/>
          <exon e_start="94230" e_stop="94286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATTATATCCTTTTTTCTATTACTTCTTGTTATTCAGATTTATCAGGTTAATGTATAAACACCTCTTTTGTTTATGTGTATGTGTTGTGCCTTCATGATGCTTTAGTTCAATCTTACTGACTTGACTGCTATGTTGCTCGGACTCTCCAAAAATGCAGCTTCACCCATGCCGGATCCTCTAAAAAGGCAATACTTTTGATGGATCCGACACACACTGAGAGGCATATTTGAAGAGTCCGAGCAATATAGGAAATGAATGTTTGTTGATTTGCTTATTTAGTTTGTATAATCCTGTTAGAACTGTTGTAGTTAAATTTATTGGCTTTATGTATGAATACCTCTTTTGGTTACATTAGTTAATGTTATGGAAATGAGAGTTCTTTGACTAGTTTGTTGGATTTGAGTCATTTGAGATCCTTATCTGTGATTACAAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAGGTGTGCAACAACTAACGAATCGTGTTGTTTTCCTTTTTCCTTTTTGAAACAAGAAAAATATTTTGAGTTTATTTTAAAGATTTTGAGTGTCTTGAAACACCTAGGTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAGGTAATGAAGATTTGACTTTTTAGAAATAAGTTTAACATGTGATGGAGCTGAGTGCTTCTGTGCACAATTATCTGCTTTGTTGTGTGTTGTAAAAACTAAATGCAGCCTCCTTTGCTGAAATGCTGTGTGAATTTGCATCAGTTACTTGCCAATGCTTTTTATGTTTCAAAGAATGTCTGAACTTAGAAATTGGGGAGTAGGAGTAGTTATTTAATACCCATCTTGAGATTGAGCAGAAACATTCTTGAAACATAGAAAGCAATGTCAAGTAACTGATGCAAATTTGCAATCGCAAGGGTTCTCAAAGAATTAACAGCTAAGAAGAGAAAAAGAATTGTGAAGAAGCAAATAGCTAATGCTTTTTACCTTCATACTTTTCCCGAATCTTGTTACAGCTAATATACCCAAAGACTGAAAAAGACTTAAATGCAACTAAATAAAGTCATAACAGAACTATAAGGGACTAACAACAATCCCCTCTACACCATAATAATAACTAACTCAACAACCTTTTACTACTCTGCGAGCCACTGTACAACTCTAGTAAACGTGTATGTATCAGTAACAGAAGATAAATTTATGGTGTAAAGTTTTTCTGTGATGAATGGTACTTCTTTAAATGAAAAGTTCAAGTTGGAGGGGAGGAATACATACGGGTAAATGGCTTATTCTAAAACTAGGTCCTAGGAAGTTGCCTACATGTACATCAGAATCGTATGTTAACATGTGATATGCTTGCTCGCATTTATGATCTAAAACGAAGGTGTGTAGCTATCCATCCAACTTAATTTGTAGTGTTTCTATAGGAAAATTTGGAAAGTTCAACTTGAAACCTATTTTTTTGCTGGTTCTTGATTTTGAGAAGTTGAACAAAATGATGAGAGAGCATAGGATATAGGTAGCGAAGTAGCAAGTCGTTTCTTTCTTTTCAATAAGATTCAGTCTGAGTTCAGATTATGTATTTTGCTCTCCCCCTTTCCACTTGCAATAGTCAAACAGAGTCTTAAGTGGTACAGTAAGTGGTAATGTCAACTTGTATGTTTCTCATGGATTACCTTGAACTTTACACCTCCGAATCTTTGTATGCAGGTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCGCAGGTTTGTTCTATTAGCCCATGATATCATTTAGTTTAACTTGAGCTTGTTTTGGTATTTTGTTATTCTAAAACCATGTTTGCAGGCCATCCGCAAGCAACCAATGACAGTATATGGGGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTGGTACTTCATCTTGATGAGTTCTCTTCCCTCATTCCCCGTCTCTGCCTTAGCGTGTTACTTTTACCTATGTATATATGGACGTCAGATTGCAGTATAATTTATTGGTTGAAGGTGGTCAAGGGTAGCTATAGCCTTTAGCAGGTGTTAGTTTTCTTGAAGTGATTTGTTCACTGTTAGTATGGATGGTAGTGAAATTAGCCTTGAGTTCTTTGGGACGTAAATATATATTGCCTGTGTTTTGAACTTCATATGAAAATCCTTCCAATCGTTTAGATGAAAAATAACTGTAGAAGTTGTAACTCATATTATGAGCAACTGGCTTTGCTCTCCTGGTTGGAACCTACGTCCTTTTCTAGCTCTACATCTTGCTTTCTGTTAAGTTGTTAAGTTTGCATCACAATACAGTGCAGTAAAATTCTAGAACTGGGCAAGAGGTTCATTGAAAAGAGAAAATATTTTGCTAGAATTAGAAGATGTATGTTCTCCCTATCAATGAACTTCAAAATTTTAGTGGTTAATGCACTTCAAAATCTTAGTGACCTAGTGGTTAAGCACCATGAGGTCTCAAATTCCATCTAAAGTACACTGTAGAGAATATACAAGATAGAATAATGTAAGTTCAGCTCTAGGAAAATTAAAGGTGAAGTAAGATATATGAGATTTTGGTGCCTTAATGTAGATGATTGGATATCCAGGCACAGTGATCCCAGAAAATGGCACGATAGTTGCATATGTAATACACTATAAAAATAATAGGCCAGCGGTGATATGGAAGTGACATGTTGAGCTTAAGAACAATGTTATATTAGAGCAAATATTGAACCTCTAAACTCCCAACATATCTACAAGATAAATGTCAAATGTTAAGATAGAAATGCAGTTCAAGATTGGATGAGATTTGAAAGAATGACACTCCACATTGGGTGAGAGTTGCATACATGAATGATAAATTGACTGAAGTTCGCCTGAGAAGGTTTGGCTTGCTCGGTCAGTAGATACGACTATATGATAGTTGGAGGCAGCAAAATGGGAACGCGATGGACCTAAAATCACGTCGAGGGGACTTGTCTCTACAGGCTTACGAGCTATCAAAACTAATGTGGACTCTGCCAAGTGAAGCACAAATTGGAAGAAAATAATTCATATAGGCCATTCCAGCTAGTTTTGAGATTAAAGTCATTCTTACTCTTTACATTAACTCGAATGTTCATCAAAAGCTTTTTTTTTTGTCTCTTATTTGTTCTGATTGGAGAGTTGTATGTGTGTATTTGATCAATGTGAGATCTAAAGAAGTAGCTTGGAAGACCCATATTAAAGATAATTAGCTTCATTTTGATTAAAGGTTGATGGATTAGTGGCCCTCATGGATGGTGAGCACATTGGCCCTTTCAACTTGGGA</genome_strand>
        <mrna_strand>TTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAG........................................................................................................GTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCGCAG..................................................................................GCCATCCGCAAGCAACCAATGACAGTATATGGGGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGATTAGTGGCCCTCATGGATGGTGAGCACATTGGCCCTTTCAACTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212470" ref_strand="+" ref_description="SGN-E212470 [cLEC-74-A23]">
      <seq>ttgtcctgcttctccagttcactacaagtataatcctgtcaaaactattaagacaaatgtgatgggcacccttaacatgttggggcttgccaagagaattggtgctaagttcttgcttaccagtacaagtgaggtttatggtgatccgcttgagcatcctcaaaaggaaacatattggggtcatgtgaatccaataggtgttaggagctgctatgacgagggaaaacggactgcggaaaccttgactatggattaccatcgcggtgcaaatgtcgaggttcgtattgctcggattttcaatacatacggacctcgtatgtgtttagatgatggacgtgttgtcagcaactttgttgcgcaggccatccgcnagcaaccaatgagacggtattgggatggaaagcaaactcgaagttttcaattcgtctctgatctggttgatggattagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="90450" stop="93189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90750" g_stop="90798" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90799" i_stop="91225" i_length="427">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91226" g_stop="91373" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="197" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91374" i_stop="91477" i_length="104">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91478" g_stop="91557" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="277" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91558" i_stop="92646" i_length="1089">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92647" g_stop="92730" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="361" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92731" i_stop="92812" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92813" g_stop="92887" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-E212470" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90750" e_stop="90798"/>
          <exon e_start="91226" e_stop="91373"/>
          <exon e_start="91478" e_stop="91557"/>
          <exon e_start="92647" e_stop="92730"/>
          <exon e_start="92813" e_stop="92887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATTATATCCTTTTTTCTATTACTTCTTGTTATTCAGATTTATCAGGTTAATGTATAAACACCTCTTTTGTTTATGTGTATGTGTTGTGCCTTCATGATGCTTTAGTTCAATCTTACTGACTTGACTGCTATGTTGCTCGGACTCTCCAAAAATGCAGCTTCACCCATGCCGGATCCTCTAAAAAGGCAATACTTTTGATGGATCCGACACACACTGAGAGGCATATTTGAAGAGTCCGAGCAATATAGGAAATGAATGTTTGTTGATTTGCTTATTTAGTTTGTATAATCCTGTTAGAACTGTTGTAGTTAAATTTATTGGCTTTATGTATGAATACCTCTTTTGGTTACATTAGTTAATGTTATGGAAATGAGAGTTCTTTGACTAGTTTGTTGGATTTGAGTCATTTGAGATCCTTATCTGTGATTACAAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAGGTGTGCAACAACTAACGAATCGTGTTGTTTTCCTTTTTCCTTTTTGAAACAAGAAAAATATTTTGAGTTTATTTTAAAGATTTTGAGTGTCTTGAAACACCTAGGTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAGGTAATGAAGATTTGACTTTTTAGAAATAAGTTTAACATGTGATGGAGCTGAGTGCTTCTGTGCACAATTATCTGCTTTGTTGTGTGTTGTAAAAACTAAATGCAGCCTCCTTTGCTGAAATGCTGTGTGAATTTGCATCAGTTACTTGCCAATGCTTTTTATGTTTCAAAGAATGTCTGAACTTAGAAATTGGGGAGTAGGAGTAGTTATTTAATACCCATCTTGAGATTGAGCAGAAACATTCTTGAAACATAGAAAGCAATGTCAAGTAACTGATGCAAATTTGCAATCGCAAGGGTTCTCAAAGAATTAACAGCTAAGAAGAGAAAAAGAATTGTGAAGAAGCAAATAGCTAATGCTTTTTACCTTCATACTTTTCCCGAATCTTGTTACAGCTAATATACCCAAAGACTGAAAAAGACTTAAATGCAACTAAATAAAGTCATAACAGAACTATAAGGGACTAACAACAATCCCCTCTACACCATAATAATAACTAACTCAACAACCTTTTACTACTCTGCGAGCCACTGTACAACTCTAGTAAACGTGTATGTATCAGTAACAGAAGATAAATTTATGGTGTAAAGTTTTTCTGTGATGAATGGTACTTCTTTAAATGAAAAGTTCAAGTTGGAGGGGAGGAATACATACGGGTAAATGGCTTATTCTAAAACTAGGTCCTAGGAAGTTGCCTACATGTACATCAGAATCGTATGTTAACATGTGATATGCTTGCTCGCATTTATGATCTAAAACGAAGGTGTGTAGCTATCCATCCAACTTAATTTGTAGTGTTTCTATAGGAAAATTTGGAAAGTTCAACTTGAAACCTATTTTTTTGCTGGTTCTTGATTTTGAGAAGTTGAACAAAATGATGAGAGAGCATAGGATATAGGTAGCGAAGTAGCAAGTCGTTTCTTTCTTTTCAATAAGATTCAGTCTGAGTTCAGATTATGTATTTTGCTCTCCCCCTTTCCACTTGCAATAGTCAAACAGAGTCTTAAGTGGTACAGTAAGTGGTAATGTCAACTTGTATGTTTCTCATGGATTACCTTGAACTTTACACCTCCGAATCTTTGTATGCAGGTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCGCAGGTTTGTTCTATTAGCCCATGATATCATTTAGTTTAACTTGAGCTTGTTTTGGTATTTTGTTATTCTAAAACCATGTTTGCAGGCCATCCGCAAGCAACCAATGACAGTATATGGGGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTG</genome_strand>
        <mrna_strand>TTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAG........................................................................................................GTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCGCAG..................................................................................GCCATCCGCNAGCAACCAATGAGACGGTATTGGGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>53</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="221" PGL_stop="4067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="221" e_stop="356"/>
            <exon e_start="3167" e_stop="3251"/>
            <exon e_start="3342" e_stop="3389"/>
            <exon e_start="3681" e_stop="3802"/>
            <exon e_start="3898" e_stop="4067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.735" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="221" e_stop="356" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.735">
            <gDNA_intron_boundary i_start="357" i_stop="3166" i_length="2810"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3167" e_stop="3251" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.886" acc_prob="0.940">
            <gDNA_intron_boundary i_start="3252" i_stop="3341" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3342" e_stop="3389" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="3390" i_stop="3680" i_length="291"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3681" e_stop="3802" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3803" i_stop="3897" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3898" e_stop="4067" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="221" stop="356"/>
              <exon start="3167" stop="3251"/>
              <exon start="3342" stop="3389"/>
              <exon start="3681" stop="3802"/>
              <exon start="3898" stop="4067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="269" stop="356"/>
              <exon start="3167" stop="3251"/>
              <exon start="3342" stop="3389"/>
              <exon start="3681" stop="3802"/>
              <exon start="3898" stop="3914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGTTTATGGGAGACTTTTTGTCACTGGAAAGCATACAAGGAAGAGTGACATTATTAACATGTTAGGGAGTTCTAGATTGAGCCCAGACGACATTAGATTTGAGTACAACATGAACTATGCTCCAGTTTCAGT : GATGATTCAGTTCCCTTCTCGAAATTCTTATGAGGCTACACTTAGGGAAGGAAGTCGGAAGGGTGGCTTATTCAGAATGGAGAGG : GTTGGTCGTCAGCAGTGGGACTCTTTGCCACGCTACGATGGAAAGACT : ATTTTATTGCAAGGGGTCCCTCGAAATGCAGTAGCCGAAGATGTGGAACGTTTCCTTGCTGGTTGCCAGTATGATGCATCGGCAATTCAAATGTTCGGTAGACCACAACGAGCTGCTGATAG : ACCACCAACTAGAACAGTCTTTGTGGAGTTCCCCTCACAGGCTAAGGCAACACATGCATTTATTACGAAGAACAGAGGTTTCTGTCTTAATAACCAAATCACAGTGCGACTTCTTCAGTGATCTCATCCATCTCCAAGATAATTATCTACGTTTTGTTTCCCTGTTTGGA</gDNA_template>
            <first_frame> V  W  F  M  G  D  F  L  S  L  E  S  I  Q  G  R  V  T  L  L  T  C  *  G  V  L  D  *  A  Q  T  T  L  D  L  S  T  T  *  T  M  L  Q  F  Q   : *  *  F  S  S  L  L  E  I  L  M  R  L  H  L  G  K  E  V  G  R  V  A  Y  S  E  W  R  G :   L  V  V  S  S  G  T  L  C  H  A  T  M  E  R  L :   F  Y  C  K  G  S  L  E  M  Q  *  P  K  M  W  N  V  S  L  L  V  A  S  M  M  H  R  Q  F  K  C  S  V  D  H  N  E  L  L  I   : D  H  Q  L  E  Q  S  L  W  S  S  P  H  R  L  R  Q  H  M  H  L  L  R  R  T  E  V  S  V  L  I  T  K  S  Q  C  D  F  F  S  D  L  I  H  L  Q  D  N  Y  L  R  F  V  S  L  F  G </first_frame>
            <second_frame>  F  G  L  W  E  T  F  C  H  W  K  A  Y  K  E  E  *  H  Y  *  H  V  R  E  F  *  I  E  P  R  R  H  *  I  *  V  Q  H  E  L  C  S  S  F  S  :  D  D  S  V  P  F  S  K  F  L  *  G  Y  T  *  G  R  K  S  E  G  W  L  I  Q  N  G  E   : G  W  S  S  A  V  G  L  F  A  T  L  R  W  K  D   : Y  F  I  A  R  G  P  S  K  C  S  S  R  R  C  G  T  F  P  C  W  L  P  V  *  C  I  G  N  S  N  V  R  *  T  T  T  S  C  *  *  :  T  T  N  *  N  S  L  C  G  V  P  L  T  G  *  G  N  T  C  I  Y  Y  E  E  Q  R  F  L  S  *  *  P  N  H  S  A  T  S  S  V  I  S  S  I  S  K  I  I  I  Y  V  L  F  P  C  L   </second_frame>
            <third_frame>   L  V  Y  G  R  L  F  V  T  G  K  H  T  R  K  S  D  I  I  N  M  L  G  S  S  R  L  S  P  D  D  I  R  F  E  Y  N  M  N  Y  A  P  V  S  V :   M  I  Q  F  P  S  R  N  S  Y  E  A  T  L  R  E  G  S  R  K  G  G  L  F  R  M  E  R  :  V  G  R  Q  Q  W  D  S  L  P  R  Y  D  G  K  T  :  I  L  L  Q  G  V  P  R  N  A  V  A  E  D  V  E  R  F  L  A  G  C  Q  Y  D  A  S  A  I  Q  M  F  G  R  P  Q  R  A  A  D  R :   P  P  T  R  T  V  F  V  E  F  P  S  Q  A  K  A  T  H  A  F  I  T  K  N  R  G  F  C  L  N  N  Q  I  T  V  R  L  L  Q  *  S  H  P  S  P  R  *  L  S  T  F  C  F  P  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="223" stop="356"/>
                    <exon start="3167" stop="3251"/>
                    <exon start="3342" stop="3389"/>
                    <exon start="3681" stop="3802"/>
                    <exon start="3898" stop="4018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVYGRLFVTGKHTRKSDIINMLGSSRLSPDDIRFEYNMNYAPVSVMIQFPSRNSYEATLREGSRKGGLFRMERVGRQQWDSLPRYDGKTILLQGVPRNAVAEDVERFLAGCQYDASAIQMFGRPQRAADRPPTRTVFVEFPSQAKATHAFITKNRGFCLNNQITVRLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11927" PGL_stop="19808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11927" e_stop="12632"/>
            <exon e_start="12775" e_stop="13370"/>
            <exon e_start="13447" e_stop="13520"/>
            <exon e_start="14163" e_stop="14247"/>
            <exon e_start="15895" e_stop="15981"/>
            <exon e_start="17514" e_stop="17586"/>
            <exon e_start="17796" e_stop="17839"/>
            <exon e_start="18109" e_stop="18237"/>
            <exon e_start="18334" e_stop="18432"/>
            <exon e_start="18688" e_stop="18975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11927" e_stop="12632" e_length="706"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.980">
            <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="12775" e_stop="13370" e_length="596"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13447" e_stop="13520" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.794">
            <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14163" e_stop="14247" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14248" i_stop="15894" i_length="1647"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15895" e_stop="15981" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15982" i_stop="17513" i_length="1532"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17514" e_stop="17586" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="17587" i_stop="17795" i_length="209"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17796" e_stop="17839" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.977">
            <gDNA_intron_boundary i_start="17840" i_stop="18108" i_length="269"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18109" e_stop="18237" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18334" e_stop="18432" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="18433" i_stop="18687" i_length="255"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="18688" e_stop="18975" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="12595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12391" stop="12632"/>
              <exon start="12775" stop="13293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12391" stop="12632"/>
              <exon start="12775" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12403" stop="12632"/>
              <exon start="12775" stop="13135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12529" stop="12632"/>
              <exon start="12775" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12829" stop="13312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12829" stop="13286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13044" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
              <exon start="15895" stop="15981"/>
              <exon start="17514" stop="17586"/>
              <exon start="17796" stop="17839"/>
              <exon start="18109" stop="18237"/>
              <exon start="18334" stop="18432"/>
              <exon start="18688" stop="18721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13044" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
              <exon start="15895" stop="15981"/>
              <exon start="17514" stop="17586"/>
              <exon start="17796" stop="17839"/>
              <exon start="18109" stop="18237"/>
              <exon start="18334" stop="18409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
              <exon start="15895" stop="15923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17514" stop="17586"/>
              <exon start="17796" stop="17839"/>
              <exon start="18109" stop="18237"/>
              <exon start="18334" stop="18432"/>
              <exon start="18688" stop="18792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18203" stop="18237"/>
              <exon start="18334" stop="18432"/>
              <exon start="18688" stop="18975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18219" stop="18237"/>
              <exon start="18334" stop="18432"/>
              <exon start="18688" stop="18975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATCTGGGACCTGGTCAGGGGACTGATTTTTGTGATGATAGCTCAGAATTTAATTCGGGTGATAGTACATGGGCTGATGATTATTTCAGCAATCTGAACTCATCCAAAGTTGCATCAGGGGACACTTGCGACGTGAAAAATGAGAGCACTACAGTTGAGCACCAGTTAGAAGTTTCTGAAGTAGATGGGAAACATCTTGATCGAACTCCGGAAGATGACCTGAAGAACCGGGAAGAAGATCTTTCCATGAAGAGTACTGTGGAGAGCACATCATGCAGCATTAAGAGGGATGATGTTTTCAAGAGCTGTCTAGAGCTATCTGCATTAGCCATGCAGGCTGAAGATGAGGTTAATCAGTCAGATACGGTTTCTCAGTCGGATATTCAGGGAGTTGTTGAAGATGTAAAGGAGACGTCTCATAGGAGTCCTTCTGCAATCAGTGCCGAAGATATACATCCTGAGAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAG : GAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG : GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA : GTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG : GAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAG : GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAG : TTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAG : GACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAG : GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAG : GAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</gDNA_template>
            <first_frame> F  H  L  G  P  G  Q  G  T  D  F  C  D  D  S  S  E  F  N  S  G  D  S  T  W  A  D  D  Y  F  S  N  L  N  S  S  K  V  A  S  G  D  T  C  D  V  K  N  E  S  T  T  V  E  H  Q  L  E  V  S  E  V  D  G  K  H  L  D  R  T  P  E  D  D  L  K  N  R  E  E  D  L  S  M  K  S  T  V  E  S  T  S  C  S  I  K  R  D  D  V  F  K  S  C  L  E  L  S  A  L  A  M  Q  A  E  D  E  V  N  Q  S  D  T  V  S  Q  S  D  I  Q  G  V  V  E  D  V  K  E  T  S  H  R  S  P  S  A  I  S  A  E  D  I  H  P  E  K  L  G  N  E  N  G  T  H  D  S  D  S  V  T  L  Q  K  S  D  L  D  V  E  H  N  A  S  D  S  A  R  D  H  P  F  M  N  D  E  Q  S  K  E  H  A  D  L  T  V  A  A  E  Q  A  Q  S  E  L  Q  G  F  D  E  S  T  E  R  D  N  V  E  Q  Q  T  A  A  L  L  K   : G  V  E  I  S  L  C  R  H  L  L  H  A  G  M  G  S  A  A  A  R  E  A  F  E  A  N  R  V  S  E  E  V  F  R  N  S  A  K  S  M  I  N  N  P  N  L  A  V  R  I  Q  G  N  Y  L  Q  W  D  K  A  A  P  I  V  L  G  M  A  A  Y  N  M  E  L  P  V  D  S  T  D  V  I  P  V  E  Q  D  K  N  L  K  T  G  E  D  D  S  G  L  P  S  T  P  G  R  R  W  R  L  W  P  M  P  F  R  R  V  K  T  I  E  H  T  T  S  N  L  S  N  E  E  V  F  V  D  S  E  S  I  S  P  N  Q  P  T  E  Q  T  A  S  P  Q  G  G  K  E  S  P  R  K  Q  L  V  R  T  N  V  P  S  T  G  Q  I  E  S  L  K  L  K  E  G  Q  N  L  V  T  F  I  F  S  T  R  V  L  G  D  Q  K  :  V  E  A  H  I  Y  L  W  K  W  N  T  R  I  V  I  S  D  V  D  G  T  I  T  K :   S  D  V  L  G  Q  F  M  P  L  V  G  K  D  W  T  H  S  G  I  A  R  L  F  C  A  I  K  :  E  N  G  Y  Q  L  L  F  L  S  A  R  A  I  V  Q  A  Y  L  T  K  S  F  L  F  N  L  K  Q  :  D  G  K  S  L  P  P  G  P  V  V  I  S  P  D  G  L  F  P  S  L  Y  R  E   : V  I  R  R  A  P  H  E  F  K  I  A  C  L  E  :  D  I  K  A  L  F  P  P  D  Y  N  P  F  Y  A  G  F  G  N  R  D  T  D  E  L  S  Y  R  K  I  G  I  P  K  G  K  I  F  I  I  N  P  K  :  G  E  V  A  I  N  H  Q  I  D  V  K  S  Y  T  S  L  H  T  L  V  N  D  M  F  P  P  T  S  M  V  E  Q  :  E  D  Y  N  L  W  N  Y  W  K  M  P  L  A  D  V  D  N  L  *  R  F  L  P  L  V  P  M  D  P  P  F  L  L  I  *  E  V  E  K  L  S  R  Y  M  Y  N  Q  L  P  A  V  S  F  V  G  E  L  P  F  F  F  V  S  I  I  K  V  Y  K  I  Q  L  C  R  F  S  L  H  C  T  Q  K  G  I  K  F  L  L  M  N  K  I  L  L  S </first_frame>
            <second_frame>  F  I  W  D  L  V  R  G  L  I  F  V  M  I  A  Q  N  L  I  R  V  I  V  H  G  L  M  I  I  S  A  I  *  T  H  P  K  L  H  Q  G  T  L  A  T  *  K  M  R  A  L  Q  L  S  T  S  *  K  F  L  K  *  M  G  N  I  L  I  E  L  R  K  M  T  *  R  T  G  K  K  I  F  P  *  R  V  L  W  R  A  H  H  A  A  L  R  G  M  M  F  S  R  A  V  *  S  Y  L  H  *  P  C  R  L  K  M  R  L  I  S  Q  I  R  F  L  S  R  I  F  R  E  L  L  K  M  *  R  R  R  L  I  G  V  L  L  Q  S  V  P  K  I  Y  I  L  R  N  W  E  M  K  M  A  L  M  I  L  T  V  *  P  F  R  K  V  T  W  T  *  S  I  M  L  Q  I  V  Q  E  T  I  L  L  *  M  M  N  S  Q  R  N  M  L  I  *  Q  *  Q  Q  S  R  H  K  V  N  C  K  D  S  M  K  A  P  N  V  I  M  W  S  S  R  L  Q  L  C  L  K  :  E  *  R  Y  L  F  V  G  T  C  F  M  L  G  W  V  P  L  L  L  E  K  P  L  R  Q  I  A  F  L  R  R  Y  S  E  T  P  Q  N  P  *  *  T  I  Q  I  *  L  S  E  F  K  E  I  I  Y  N  G  T  K  L  H  L  S  F  S  G  W  L  H  T  I  W  N  Y  L  L  T  P  L  T  S  Y  P  W  S  R  T  R  T  *  K  Q  E  R  M  I  V  G  C  L  Q  L  L  V  D  D  G  G  F  G  Q  C  H  L  E  E  L  R  Q  S  N  T  L  P  V  I  Y  Q  M  K  R  C  L  L  I  L  N  Q  S  H  R  T  S  L  Q  N  K  Q  H  H  H  K  E  E  R  N  L  L  A  S  N  L  *  E  Q  M  S  L  L  L  V  K  L  N  L  *  N  *  K  R  V  R  I  W  *  L  S  F  F  P  L  E  S  W  E  T  K  R :   L  K  P  I  Y  I  C  G  S  G  I  L  G  L  *  F  L  M  L  M  G  L  L  P   : S  L  M  F  L  V  S  S  C  R  W  L  E  R  I  G  P  T  P  E  S  L  D  F  S  V  Q  S  R :   K  T  D  I  S  Y  S  F  S  V  H  E  Q  L  F  K  L  I  *  P  K  V  F  C  S  I  S  N  R :   M  G  N  H  Y  H  L  D  L  L  L  F  H  L  M  V  Y  F  P  H  C  T  E  K  :  L  *  E  E  L  L  M  N  S  R  L  H  A  *  R :   T  *  K  H  F  F  H  Q  T  I  T  L  F  M  R  D  S  G  I  G  T  L  M  S  S  V  T  G  K  L  E  F  Q  K  A  K  F  L  *  *  T  Q  R :   G  R  *  L  L  T  T  K  S  T  *  N  P  I  L  H  Y  T  L  *  L  M  T  C  S  L  L  H  P  W  L  S  R :   K  I  I  T  Y  G  T  T  G  K  C  P  W  Q  T  S  I  T  C  R  D  F  F  P  S  Y  R  W  I  H  L  F  C  *  S  E  K  S  K  S  L  A  G  I  C  I  T  N  Y  L  Q  F  L  L  *  E  S  C  H  S  S  L  F  L  L  L  R  C  I  K  F  S  Y  V  G  S  H  Y  I  V  L  K  K  A  *  S  S  C  S  *  I  K  F  Y  F   </second_frame>
            <third_frame>   S  S  G  T  W  S  G  D  *  F  L  *  *  *  L  R  I  *  F  G  *  *  Y  M  G  *  *  L  F  Q  Q  S  E  L  I  Q  S  C  I  R  G  H  L  R  R  E  K  *  E  H  Y  S  *  A  P  V  R  S  F  *  S  R  W  E  T  S  *  S  N  S  G  R  *  P  E  E  P  G  R  R  S  F  H  E  E  Y  C  G  E  H  I  M  Q  H  *  E  G  *  C  F  Q  E  L  S  R  A  I  C  I  S  H  A  G  *  R  *  G  *  S  V  R  Y  G  F  S  V  G  Y  S  G  S  C  *  R  C  K  G  D  V  S  *  E  S  F  C  N  Q  C  R  R  Y  T  S  *  E  I  G  K  *  K  W  H  S  *  F  *  Q  C  N  P  S  E  K  *  L  G  R  R  A  *  C  F  R  *  C  K  R  P  S  F  Y  E  *  *  T  V  K  G  T  C  *  F  N  S  S  S  R  A  G  T  K  *  T  A  R  I  R  *  K  H  R  T  *  *  C  G  A  A  D  C  S  F  A  *  R :   S  R  D  I  S  L  *  A  L  A  S  C  W  D  G  F  R  C  C  *  R  S  L  *  G  K  S  R  F  *  G  G  I  Q  K  L  R  K  I  H  D  K  Q  S  K  F  S  C  P  N  S  R  K  L  F  T  M  G  Q  S  C  T  Y  R  S  R  D  G  C  I  Q  Y  G  I  T  C  *  L  H  *  R  H  T  R  G  A  G  Q  E  P  K  N  R  R  G  *  *  W  V  A  F  N  S  W  S  T  M  E  A  L  A  N  A  I  *  K  S  *  D  N  R  T  H  Y  Q  *  S  I  K  *  R  G  V  C  *  F  *  I  N  L  T  E  P  A  Y  R  T  N  S  I  T  T  R  R  K  G  I  S  S  Q  A  T  C  E  N  K  C  P  F  Y  W  S  N  *  I  F  K  T  E  R  G  S  E  F  G  D  F  H  F  F  H  S  S  P  G  R  P  K   : G  *  S  P  Y  I  F  V  E  V  E  Y  S  D  C  N  F  *  C  *  W  D  Y  Y  Q  :  V  *  C  S  W  S  V  H  A  V  G  W  K  G  L  D  P  L  R  N  R  *  T  F  L  C  N  Q   : G  K  R  I  S  A  T  L  S  Q  C  T  S  N  C  S  S  L  S  D  Q  K  F  S  V  Q  S  Q  T   : G  W  E  I  I  T  T  W  T  C  C  Y  F  T  *  W  F  I  S  L  I  V  Q  R  S :   Y  K  K  S  S  S  *  I  Q  D  C  M  L  R   : G  H  K  S  T  F  S  T  R  L  *  P  F  L  C  G  I  R  E  *  G  H  *  *  A  Q  L  Q  E  N  W  N  S  K  R  Q  N  F  Y  N  K  P  K   : G  G  G  S  Y  *  P  P  N  R  R  E  I  L  Y  F  I  T  H  S  S  *  *  H  V  P  S  Y  I  H  G  *  A   : G  R  L  *  L  M  E  L  L  E  N  A  P  G  R  R  R  *  L  V  E  I  S  S  P  R  T  D  G  S  T  F  F  V  D  L  R  S  R  K  A  *  P  V  Y  V  *  P  T  T  C  S  F  F  C  R  R  A  A  I  L  L  C  F  Y  Y  *  G  V  *  N  S  A  M  *  V  L  I  T  L  Y  S  K  R  H  K  V  L  A  H  E  *  N  F  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11927" stop="12632"/>
                    <exon start="12775" stop="13370"/>
                    <exon start="13447" stop="13520"/>
                    <exon start="14163" stop="14247"/>
                    <exon start="15895" stop="15981"/>
                    <exon start="17514" stop="17586"/>
                    <exon start="17796" stop="17839"/>
                    <exon start="18109" stop="18237"/>
                    <exon start="18334" stop="18432"/>
                    <exon start="18688" stop="18747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1950</number_coding_nucleotides>
                  <number_encoded_amino_acids>650</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHLGPGQGTDFCDDSSEFNSGDSTWADDYFSNLNSSKVASGDTCDVKNESTTVEHQLEVSEVDGKHLDRTPEDDLKNREEDLSMKSTVESTSCSIKRDDVFKSCLELSALAMQAEDEVNQSDTVSQSDIQGVVEDVKETSHRSPSAISAEDIHPEKLGNENGTHDSDSVTLQKSDLDVEHNASDSARDHPFMNDEQSKEHADLTVAAEQAQSELQGFDESTERDNVEQQTAALLKGVEISLCRHLLHAGMGSAAAREAFEANRVSEEVFRNSAKSMINNPNLAVRIQGNYLQWDKAAPIVLGMAAYNMELPVDSTDVIPVEQDKNLKTGEDDSGLPSTPGRRWRLWPMPFRRVKTIEHTTSNLSNEEVFVDSESISPNQPTEQTASPQGGKESPRKQLVRTNVPSTGQIESLKLKEGQNLVTFIFSTRVLGDQKVEAHIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGKDWTHSGIARLFCAIKENGYQLLFLSARAIVQAYLTKSFLFNLKQDGKSLPPGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKALFPPDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAINHQIDVKSYTSLHTLVNDMFPPTSMVEQEDYNLWNYWKMPLADVDNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11927" e_stop="12632"/>
            <exon e_start="12775" e_stop="13370"/>
            <exon e_start="13447" e_stop="13520"/>
            <exon e_start="14163" e_stop="14247"/>
            <exon e_start="15895" e_stop="15981"/>
            <exon e_start="17514" e_stop="17586"/>
            <exon e_start="17796" e_stop="17839"/>
            <exon e_start="18109" e_stop="18237"/>
            <exon e_start="18334" e_stop="18988"/>
            <exon e_start="19766" e_stop="19808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.721"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11927" e_stop="12632" e_length="706"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.980">
            <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="12775" e_stop="13370" e_length="596"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13447" e_stop="13520" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.794">
            <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14163" e_stop="14247" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14248" i_stop="15894" i_length="1647"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15895" e_stop="15981" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15982" i_stop="17513" i_length="1532"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17514" e_stop="17586" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="17587" i_stop="17795" i_length="209"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17796" e_stop="17839" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.977">
            <gDNA_intron_boundary i_start="17840" i_stop="18108" i_length="269"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18109" e_stop="18237" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="18334" e_stop="18988" e_length="655"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18989" i_stop="19765" i_length="777"/>
          </intron>
          <exon e_serial="10" e_score="0.721">
            <gDNA_exon_boundary e_start="19766" e_stop="19808" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="12595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12391" stop="12632"/>
              <exon start="12775" stop="13293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12391" stop="12632"/>
              <exon start="12775" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12403" stop="12632"/>
              <exon start="12775" stop="13135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12529" stop="12632"/>
              <exon start="12775" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12829" stop="13312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12829" stop="13286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13044" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
              <exon start="15895" stop="15981"/>
              <exon start="17514" stop="17586"/>
              <exon start="17796" stop="17839"/>
              <exon start="18109" stop="18237"/>
              <exon start="18334" stop="18409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13110" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
              <exon start="15895" stop="15923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18393" stop="18988"/>
              <exon start="19766" stop="19808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATCTGGGACCTGGTCAGGGGACTGATTTTTGTGATGATAGCTCAGAATTTAATTCGGGTGATAGTACATGGGCTGATGATTATTTCAGCAATCTGAACTCATCCAAAGTTGCATCAGGGGACACTTGCGACGTGAAAAATGAGAGCACTACAGTTGAGCACCAGTTAGAAGTTTCTGAAGTAGATGGGAAACATCTTGATCGAACTCCGGAAGATGACCTGAAGAACCGGGAAGAAGATCTTTCCATGAAGAGTACTGTGGAGAGCACATCATGCAGCATTAAGAGGGATGATGTTTTCAAGAGCTGTCTAGAGCTATCTGCATTAGCCATGCAGGCTGAAGATGAGGTTAATCAGTCAGATACGGTTTCTCAGTCGGATATTCAGGGAGTTGTTGAAGATGTAAAGGAGACGTCTCATAGGAGTCCTTCTGCAATCAGTGCCGAAGATATACATCCTGAGAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAG : GAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG : GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA : GTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG : GAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAG : GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAG : TTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAG : GACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAG : GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCTATTTCTCTTGAAA : TAAAAAAAAAAAAAAAGGAAAAAGAAAGGAATAGAGAAGGCGC</gDNA_template>
            <first_frame> F  H  L  G  P  G  Q  G  T  D  F  C  D  D  S  S  E  F  N  S  G  D  S  T  W  A  D  D  Y  F  S  N  L  N  S  S  K  V  A  S  G  D  T  C  D  V  K  N  E  S  T  T  V  E  H  Q  L  E  V  S  E  V  D  G  K  H  L  D  R  T  P  E  D  D  L  K  N  R  E  E  D  L  S  M  K  S  T  V  E  S  T  S  C  S  I  K  R  D  D  V  F  K  S  C  L  E  L  S  A  L  A  M  Q  A  E  D  E  V  N  Q  S  D  T  V  S  Q  S  D  I  Q  G  V  V  E  D  V  K  E  T  S  H  R  S  P  S  A  I  S  A  E  D  I  H  P  E  K  L  G  N  E  N  G  T  H  D  S  D  S  V  T  L  Q  K  S  D  L  D  V  E  H  N  A  S  D  S  A  R  D  H  P  F  M  N  D  E  Q  S  K  E  H  A  D  L  T  V  A  A  E  Q  A  Q  S  E  L  Q  G  F  D  E  S  T  E  R  D  N  V  E  Q  Q  T  A  A  L  L  K   : G  V  E  I  S  L  C  R  H  L  L  H  A  G  M  G  S  A  A  A  R  E  A  F  E  A  N  R  V  S  E  E  V  F  R  N  S  A  K  S  M  I  N  N  P  N  L  A  V  R  I  Q  G  N  Y  L  Q  W  D  K  A  A  P  I  V  L  G  M  A  A  Y  N  M  E  L  P  V  D  S  T  D  V  I  P  V  E  Q  D  K  N  L  K  T  G  E  D  D  S  G  L  P  S  T  P  G  R  R  W  R  L  W  P  M  P  F  R  R  V  K  T  I  E  H  T  T  S  N  L  S  N  E  E  V  F  V  D  S  E  S  I  S  P  N  Q  P  T  E  Q  T  A  S  P  Q  G  G  K  E  S  P  R  K  Q  L  V  R  T  N  V  P  S  T  G  Q  I  E  S  L  K  L  K  E  G  Q  N  L  V  T  F  I  F  S  T  R  V  L  G  D  Q  K  :  V  E  A  H  I  Y  L  W  K  W  N  T  R  I  V  I  S  D  V  D  G  T  I  T  K :   S  D  V  L  G  Q  F  M  P  L  V  G  K  D  W  T  H  S  G  I  A  R  L  F  C  A  I  K  :  E  N  G  Y  Q  L  L  F  L  S  A  R  A  I  V  Q  A  Y  L  T  K  S  F  L  F  N  L  K  Q  :  D  G  K  S  L  P  P  G  P  V  V  I  S  P  D  G  L  F  P  S  L  Y  R  E   : V  I  R  R  A  P  H  E  F  K  I  A  C  L  E  :  D  I  K  A  L  F  P  P  D  Y  N  P  F  Y  A  G  F  G  N  R  D  T  D  E  L  S  Y  R  K  I  G  I  P  K  G  K  I  F  I  I  N  P  K  :  G  E  V  A  I  N  H  Q  I  D  V  K  S  Y  T  S  L  H  T  L  V  N  D  M  F  P  P  T  S  M  V  E  Q  V  S  A  R  *  L  S  F  L  I  S  H  L  C  L  F  *  S  K  L  L  A  *  T  I  S  F  R  D  S  K  A  S  G  *  T  C  I  V  I  L  F  C  L  H  A  L  C  K  E  P  T  F  H  S  L  V  I  F  E  L  Q  L  F  Y  T  V  F  Q  R  G  P  S  P  *  H  C  S  G  F  S  L  *  M  Q  E  D  Y  N  L  W  N  Y  W  K  M  P  L  A  D  V  D  N  L  *  R  F  L  P  L  V  P  M  D  P  P  F  L  L  I  *  E  V  E  K  L  S  R  Y  M  Y  N  Q  L  P  A  V  S  F  V  G  E  L  P  F  F  F  V  S  I  I  K  V  Y  K  I  Q  L  C  R  F  S  L  H  C  T  Q  K  G  I  K  F  L  L  M  N  K  I  L  L  S  I  S  L  E   : I  K  K  K  K  K  E  K  E  R  N  R  E  G   </first_frame>
            <second_frame>  F  I  W  D  L  V  R  G  L  I  F  V  M  I  A  Q  N  L  I  R  V  I  V  H  G  L  M  I  I  S  A  I  *  T  H  P  K  L  H  Q  G  T  L  A  T  *  K  M  R  A  L  Q  L  S  T  S  *  K  F  L  K  *  M  G  N  I  L  I  E  L  R  K  M  T  *  R  T  G  K  K  I  F  P  *  R  V  L  W  R  A  H  H  A  A  L  R  G  M  M  F  S  R  A  V  *  S  Y  L  H  *  P  C  R  L  K  M  R  L  I  S  Q  I  R  F  L  S  R  I  F  R  E  L  L  K  M  *  R  R  R  L  I  G  V  L  L  Q  S  V  P  K  I  Y  I  L  R  N  W  E  M  K  M  A  L  M  I  L  T  V  *  P  F  R  K  V  T  W  T  *  S  I  M  L  Q  I  V  Q  E  T  I  L  L  *  M  M  N  S  Q  R  N  M  L  I  *  Q  *  Q  Q  S  R  H  K  V  N  C  K  D  S  M  K  A  P  N  V  I  M  W  S  S  R  L  Q  L  C  L  K  :  E  *  R  Y  L  F  V  G  T  C  F  M  L  G  W  V  P  L  L  L  E  K  P  L  R  Q  I  A  F  L  R  R  Y  S  E  T  P  Q  N  P  *  *  T  I  Q  I  *  L  S  E  F  K  E  I  I  Y  N  G  T  K  L  H  L  S  F  S  G  W  L  H  T  I  W  N  Y  L  L  T  P  L  T  S  Y  P  W  S  R  T  R  T  *  K  Q  E  R  M  I  V  G  C  L  Q  L  L  V  D  D  G  G  F  G  Q  C  H  L  E  E  L  R  Q  S  N  T  L  P  V  I  Y  Q  M  K  R  C  L  L  I  L  N  Q  S  H  R  T  S  L  Q  N  K  Q  H  H  H  K  E  E  R  N  L  L  A  S  N  L  *  E  Q  M  S  L  L  L  V  K  L  N  L  *  N  *  K  R  V  R  I  W  *  L  S  F  F  P  L  E  S  W  E  T  K  R :   L  K  P  I  Y  I  C  G  S  G  I  L  G  L  *  F  L  M  L  M  G  L  L  P   : S  L  M  F  L  V  S  S  C  R  W  L  E  R  I  G  P  T  P  E  S  L  D  F  S  V  Q  S  R :   K  T  D  I  S  Y  S  F  S  V  H  E  Q  L  F  K  L  I  *  P  K  V  F  C  S  I  S  N  R :   M  G  N  H  Y  H  L  D  L  L  L  F  H  L  M  V  Y  F  P  H  C  T  E  K  :  L  *  E  E  L  L  M  N  S  R  L  H  A  *  R :   T  *  K  H  F  F  H  Q  T  I  T  L  F  M  R  D  S  G  I  G  T  L  M  S  S  V  T  G  K  L  E  F  Q  K  A  K  F  L  *  *  T  Q  R :   G  R  *  L  L  T  T  K  S  T  *  N  P  I  L  H  Y  T  L  *  L  M  T  C  S  L  L  H  P  W  L  S  R  L  V  L  D  D  S  R  F  *  Y  L  I  F  V  C  S  K  V  S  Y  *  H  R  Q  S  H  L  E  T  R  K  H  L  V  R  H  A  *  S  F  F  S  V  C  T  R  Y  A  K  N  Q  L  F  I  H  W  L  S  L  S  F  N  S  S  I  Q  S  F  N  G  G  H  L  H  D  I  V  L  D  F  H  C  K  C  R  K  I  I  T  Y  G  T  T  G  K  C  P  W  Q  T  S  I  T  C  R  D  F  F  P  S  Y  R  W  I  H  L  F  C  *  S  E  K  S  K  S  L  A  G  I  C  I  T  N  Y  L  Q  F  L  L  *  E  S  C  H  S  S  L  F  L  L  L  R  C  I  K  F  S  Y  V  G  S  H  Y  I  V  L  K  K  A  *  S  S  C  S  *  I  K  F  Y  F  L  F  L  L  K  :  *  K  K  K  K  R  K  K  K  G  I  E  K  A  </second_frame>
            <third_frame>   S  S  G  T  W  S  G  D  *  F  L  *  *  *  L  R  I  *  F  G  *  *  Y  M  G  *  *  L  F  Q  Q  S  E  L  I  Q  S  C  I  R  G  H  L  R  R  E  K  *  E  H  Y  S  *  A  P  V  R  S  F  *  S  R  W  E  T  S  *  S  N  S  G  R  *  P  E  E  P  G  R  R  S  F  H  E  E  Y  C  G  E  H  I  M  Q  H  *  E  G  *  C  F  Q  E  L  S  R  A  I  C  I  S  H  A  G  *  R  *  G  *  S  V  R  Y  G  F  S  V  G  Y  S  G  S  C  *  R  C  K  G  D  V  S  *  E  S  F  C  N  Q  C  R  R  Y  T  S  *  E  I  G  K  *  K  W  H  S  *  F  *  Q  C  N  P  S  E  K  *  L  G  R  R  A  *  C  F  R  *  C  K  R  P  S  F  Y  E  *  *  T  V  K  G  T  C  *  F  N  S  S  S  R  A  G  T  K  *  T  A  R  I  R  *  K  H  R  T  *  *  C  G  A  A  D  C  S  F  A  *  R :   S  R  D  I  S  L  *  A  L  A  S  C  W  D  G  F  R  C  C  *  R  S  L  *  G  K  S  R  F  *  G  G  I  Q  K  L  R  K  I  H  D  K  Q  S  K  F  S  C  P  N  S  R  K  L  F  T  M  G  Q  S  C  T  Y  R  S  R  D  G  C  I  Q  Y  G  I  T  C  *  L  H  *  R  H  T  R  G  A  G  Q  E  P  K  N  R  R  G  *  *  W  V  A  F  N  S  W  S  T  M  E  A  L  A  N  A  I  *  K  S  *  D  N  R  T  H  Y  Q  *  S  I  K  *  R  G  V  C  *  F  *  I  N  L  T  E  P  A  Y  R  T  N  S  I  T  T  R  R  K  G  I  S  S  Q  A  T  C  E  N  K  C  P  F  Y  W  S  N  *  I  F  K  T  E  R  G  S  E  F  G  D  F  H  F  F  H  S  S  P  G  R  P  K   : G  *  S  P  Y  I  F  V  E  V  E  Y  S  D  C  N  F  *  C  *  W  D  Y  Y  Q  :  V  *  C  S  W  S  V  H  A  V  G  W  K  G  L  D  P  L  R  N  R  *  T  F  L  C  N  Q   : G  K  R  I  S  A  T  L  S  Q  C  T  S  N  C  S  S  L  S  D  Q  K  F  S  V  Q  S  Q  T   : G  W  E  I  I  T  T  W  T  C  C  Y  F  T  *  W  F  I  S  L  I  V  Q  R  S :   Y  K  K  S  S  S  *  I  Q  D  C  M  L  R   : G  H  K  S  T  F  S  T  R  L  *  P  F  L  C  G  I  R  E  *  G  H  *  *  A  Q  L  Q  E  N  W  N  S  K  R  Q  N  F  Y  N  K  P  K   : G  G  G  S  Y  *  P  P  N  R  R  E  I  L  Y  F  I  T  H  S  S  *  *  H  V  P  S  Y  I  H  G  *  A  G  *  C  S  M  T  L  V  F  N  I  S  S  L  F  V  L  K  *  V  I  S  I  D  N  L  I  *  R  L  E  S  I  W  L  D  M  H  S  H  S  F  L  F  A  R  V  M  Q  R  T  N  F  S  F  T  G  Y  L  *  A  S  T  L  L  Y  S  L  S  T  G  A  I  S  M  T  L  F  W  I  F  I  V  N  A  G  R  L  *  L  M  E  L  L  E  N  A  P  G  R  R  R  *  L  V  E  I  S  S  P  R  T  D  G  S  T  F  F  V  D  L  R  S  R  K  A  *  P  V  Y  V  *  P  T  T  C  S  F  F  C  R  R  A  A  I  L  L  C  F  Y  Y  *  G  V  *  N  S  A  M  *  V  L  I  T  L  Y  S  K  R  H  K  V  L  A  H  E  *  N  F  T  F  Y  F  S  *  N :   K  K  K  K  K  G  K  R  K  E  *  R  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11927" stop="12632"/>
                    <exon start="12775" stop="13370"/>
                    <exon start="13447" stop="13520"/>
                    <exon start="14163" stop="14247"/>
                    <exon start="15895" stop="15981"/>
                    <exon start="17514" stop="17586"/>
                    <exon start="17796" stop="17839"/>
                    <exon start="18109" stop="18237"/>
                    <exon start="18334" stop="18447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1905</number_coding_nucleotides>
                  <number_encoded_amino_acids>635</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHLGPGQGTDFCDDSSEFNSGDSTWADDYFSNLNSSKVASGDTCDVKNESTTVEHQLEVSEVDGKHLDRTPEDDLKNREEDLSMKSTVESTSCSIKRDDVFKSCLELSALAMQAEDEVNQSDTVSQSDIQGVVEDVKETSHRSPSAISAEDIHPEKLGNENGTHDSDSVTLQKSDLDVEHNASDSARDHPFMNDEQSKEHADLTVAAEQAQSELQGFDESTERDNVEQQTAALLKGVEISLCRHLLHAGMGSAAAREAFEANRVSEEVFRNSAKSMINNPNLAVRIQGNYLQWDKAAPIVLGMAAYNMELPVDSTDVIPVEQDKNLKTGEDDSGLPSTPGRRWRLWPMPFRRVKTIEHTTSNLSNEEVFVDSESISPNQPTEQTASPQGGKESPRKQLVRTNVPSTGQIESLKLKEGQNLVTFIFSTRVLGDQKVEAHIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGKDWTHSGIARLFCAIKENGYQLLFLSARAIVQAYLTKSFLFNLKQDGKSLPPGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKALFPPDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAINHQIDVKSYTSLHTLVNDMFPPTSMVEQVSAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18548" stop="18790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSVCTRYAKNQLFIHWLSLSFNSSIQSFNGGHLHDIVLDFHCKCRKIITYGTTGKCPWQTSITCRDFFPSYRWIHLFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18796" stop="18988"/>
                    <exon start="19766" stop="19806"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVEKLSRYMYNQLPAVSFVGELPFFFVSIIKVYKIQLCRFSLHCTQKGIKFLLMNKILLSISLEIKKKKKEKERNREG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15956" e_stop="16735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="15956" e_stop="16735" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15956" stop="16735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15956" stop="16396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15957" stop="16576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAGGTGTTACACGCCATAGGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGAATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAAT</gDNA_template>
            <first_frame> K  V  F  C  S  I  S  N  R  *  S  *  F  S  L  H  E  I  P  M  T  L  V  F  S  F  L  K  D  A  E  Y  L  F  E  S  Q  G  S  M  S  V  G  F  S  V  T  C  R  T  I  S  R  F  I  C  F  *  R  D  C  H  M  Y  G  C  K  L  F  G  L  N  H  E  K  *  P  S  Q  K  S  W  S  V  W  Y  C  F  L  V  F  F  *  I  K  I  M  F  G  F  C  L  F  *  F  S  L  Q  G  F  L  F  S  N  A  V  S  F  F  F  P  F  *  F  R  K  R  E  H  *  N  *  G  Y  A  *  F  I  Q  V  S  V  S  F  T  S  P  L  T  P  S  L  S  L  T  S  S  P  H  F  K  A  R  L  E  H  D  Q  M  N  T  L  E  M  *  V  K  H  *  *  S  K  I  *  K  P  M  L  L  R  I  I  Y  K  I  F  S  F  S  S  L  S  K  H  T  T  S  E  G  L  Q  E  A  F  S  K  F  G  E  V  L  H  A  I  G  C  L  S  L  A  M  H  E  T  S  K  Q  *  F  F  S  L  N  *  *  L  P  Y  Q  S  A  S  I  N  *  S  S  I  S  N </first_frame>
            <second_frame>  K  F  S  V  Q  S  Q  T  G  N  H  N  S  V  Y  M  K  Y  R  *  H  *  F  L  V  S  *  K  M  Q  N  I  Y  L  N  L  K  G  A  C  Q  L  D  F  L  L  H  V  G  P  F  L  D  S  Y  V  S  E  G  T  V  I  C  T  A  V  N  C  L  V  *  T  T  R  N  D  Q  A  K  N  L  G  L  F  G  T  A  F  L  C  F  F  K  *  K  L  C  L  V  S  V  C  F  D  S  L  C  R  G  F  C  F  P  T  R  F  P  F  S  F  L  F  N  L  E  K  E  N  T  E  I  R  D  M  H  S  L  S  R  Y  Q  F  P  S  L  P  P  S  L  H  L  C  L  S  L  L  L  H  T  S  R  R  D  *  N  M  I  K  *  T  P  *  K  C  R  *  N  I  D  N  L  R  S  K  N  R  C  Y  C  E  S  Y  T  K  S  F  L  F  P  V  L  A  N  I  L  P  Q  K  G  F  K  K  L  F  P  N  L  V  R  C  Y  T  P  *  A  V  Y  P  W  L  C  M  K  L  R  N  S  D  F  F  H  *  I  D  S  C  H  I  S  R  H  L  S  T  N  H  L  S  Q   </second_frame>
            <third_frame>   S  F  L  F  N  L  K  Q  V  I  I  I  Q  F  T  *  N  T  D  D  T  S  F  *  F  P  K  R  C  R  I  F  I  *  I  S  R  E  H  V  S  W  I  F  C  Y  M  *  D  H  F  S  I  H  M  F  L  K  G  L  S  Y  V  R  L  *  I  V  W  F  K  P  R  E  M  T  K  P  K  I  L  V  C  L  V  L  L  S  C  V  F  L  N  K  N  Y  V  W  F  L  F  V  L  I  L  S  A  G  V  S  V  F  Q  R  G  F  L  F  L  S  F  L  I  *  K  K  R  T  L  K  L  G  I  C  I  V  Y  P  G  I  S  F  L  H  F  P  P  H  S  I  S  V  S  H  F  F  S  T  L  Q  G  E  T  R  T  *  S  N  E  H  P  R  N  V  G  E  T  L  I  I  *  D  L  K  T  D  V  I  A  N  H  I  Q  N  L  F  F  F  Q  S  *  Q  T  Y  Y  L  R  R  A  S  R  S  F  F  Q  I  W  *  G  V  T  R  H  R  L  F  I  P  G  Y  A  *  N  F  E  T  V  I  F  F  I  E  L  I  V  A  I  S  V  G  I  Y  Q  L  I  I  Y  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16239" stop="16448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLCLVSVCFDSLCRGFCFPTRFPFSFLFNLEKENTEIRDMHSLSRYQFPSLPPSLHLCLSLLLHTSRRD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="35601" PGL_stop="36259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35601" e_stop="36259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35601" e_stop="36259" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35601" stop="36259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTCTTGCAACATAACCCCATCACAAATGGTTCAAAAACTTCTTCAAACATCAAAGATTCAATCTTTTCAACAACAAGAAGAGAGATTCAACATTAGTACTAACACTAGCACCCCATTTGAGTCTTGCAACATTTCTCCATCAGAGTCTTGTAGAGTGAGTTGTGAACTTAATCCAGATGAGTATTTCTTTGAATGGTCCACTGAATTCAGCACTTTTTTCAAAGACAATCATCCAAAGATGAAATCTTGGTCCAAAAAGCTTAAGTTAGTGAAACAATCATTAATCAGTCAAAAGCTTAAGTCTTCAACTTCAAAAGCATATCTCAATCTCAAGTCTTTATTCAACAAGTCTACTTGTTCACTAGAACAACAACAACAAGAAGTTCCTAAAGAATGTTCAAATAAGTACATTAAGGTATGTAAAAGAACCCCTTTTGGTCATATTGGAAAATGTACACATTCACCAACATTAGCAAGTATGATAAGAGATAATGAAGGAGAAGGGGTTCATGAAGACAATGTTAATAGTAATCATAGAAGGTCATTTTCAGCAGCAATCAAGAAACATTCACCAACAAAATGTTTATCATCTTCATCATCTAATGGTTCAACTTCATCATCATCATCATCATCATCTTTTTCATTGAATTCTAAT</gDNA_template>
            <first_frame> L  I  L  A  T  *  P  H  H  K  W  F  K  N  F  F  K  H  Q  R  F  N  L  F  N  N  K  K  R  D  S  T  L  V  L  T  L  A  P  H  L  S  L  A  T  F  L  H  Q  S  L  V  E  *  V  V  N  L  I  Q  M  S  I  S  L  N  G  P  L  N  S  A  L  F  S  K  T  I  I  Q  R  *  N  L  G  P  K  S  L  S  *  *  N  N  H  *  S  V  K  S  L  S  L  Q  L  Q  K  H  I  S  I  S  S  L  Y  S  T  S  L  L  V  H  *  N  N  N  N  K  K  F  L  K  N  V  Q  I  S  T  L  R  Y  V  K  E  P  L  L  V  I  L  E  N  V  H  I  H  Q  H  *  Q  V  *  *  E  I  M  K  E  K  G  F  M  K  T  M  L  I  V  I  I  E  G  H  F  Q  Q  Q  S  R  N  I  H  Q  Q  N  V  Y  H  L  H  H  L  M  V  Q  L  H  H  H  H  H  H  H  L  F  H  *  I  L   </first_frame>
            <second_frame>  *  F  L  Q  H  N  P  I  T  N  G  S  K  T  S  S  N  I  K  D  S  I  F  S  T  T  R  R  E  I  Q  H  *  Y  *  H  *  H  P  I  *  V  L  Q  H  F  S  I  R  V  L  *  S  E  L  *  T  *  S  R  *  V  F  L  *  M  V  H  *  I  Q  H  F  F  Q  R  Q  S  S  K  D  E  I  L  V  Q  K  A  *  V  S  E  T  I  I  N  Q  S  K  A  *  V  F  N  F  K  S  I  S  Q  S  Q  V  F  I  Q  Q  V  Y  L  F  T  R  T  T  T  T  R  S  S  *  R  M  F  K  *  V  H  *  G  M  *  K  N  P  F  W  S  Y  W  K  M  Y  T  F  T  N  I  S  K  Y  D  K  R  *  *  R  R  R  G  S  *  R  Q  C  *  *  *  S  *  K  V  I  F  S  S  N  Q  E  T  F  T  N  K  M  F  I  I  F  I  I  *  W  F  N  F  I  I  I  I  I  I  I  F  F  I  E  F  *  </second_frame>
            <third_frame>   D  S  C  N  I  T  P  S  Q  M  V  Q  K  L  L  Q  T  S  K  I  Q  S  F  Q  Q  Q  E  E  R  F  N  I  S  T  N  T  S  T  P  F  E  S  C  N  I  S  P  S  E  S  C  R  V  S  C  E  L  N  P  D  E  Y  F  F  E  W  S  T  E  F  S  T  F  F  K  D  N  H  P  K  M  K  S  W  S  K  K  L  K  L  V  K  Q  S  L  I  S  Q  K  L  K  S  S  T  S  K  A  Y  L  N  L  K  S  L  F  N  K  S  T  C  S  L  E  Q  Q  Q  Q  E  V  P  K  E  C  S  N  K  Y  I  K  V  C  K  R  T  P  F  G  H  I  G  K  C  T  H  S  P  T  L  A  S  M  I  R  D  N  E  G  E  G  V  H  E  D  N  V  N  S  N  H  R  R  S  F  S  A  A  I  K  K  H  S  P  T  K  C  L  S  S  S  S  S  N  G  S  T  S  S  S  S  S  S  S  S  F  S  L  N  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35603" stop="36259"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSCNITPSQMVQKLLQTSKIQSFQQQEERFNISTNTSTPFESCNISPSESCRVSCELNPDEYFFEWSTEFSTFFKDNHPKMKSWSKKLKLVKQSLISQKLKSSTSKAYLNLKSLFNKSTCSLEQQQQEVPKECSNKYIKVCKRTPFGHIGKCTHSPTLASMIRDNEGEGVHEDNVNSNHRRSFSAAIKKHSPTKCLSSSSSNGSTSSSSSSSSFSLNSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="42051" PGL_stop="41372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42051" e_stop="41372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="42051" e_stop="41372" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42051" stop="41372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420961" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCATCACATTCAGCTGCATAGCAGGTTTCATAGTAATAGTCCTTAACCAATTCCAAGATCAACTTGTATTCTATTTAACCCCTACGGATGCTCTAGAAAAACACGCTGAAAATCCTACAAGATCCAAATTTCGACTCGGTGGACTAGTACTAGAAAATAGTGTAACACCAATACCCAATTCCCCAGAAATGGAATTTGTGATAACTGATTTGATTACTGATATTTTGGTTAAGTACGACGGGTCGTTACCAGATCTTTTTCGGGAAGGGCATTCCGTTGTAGTAGAAGGGTTTATAAAGCCATTTACTGAAGAGATGAAGAAGAAAGAAAACGAAATCTTGAGCGAGAAGAAGTTACAACTAACTGAGAAGGCGAGAAGTGGGGACTGTTATTTTGCAGCTACTGAAGTGTTGGCTAAACACGATGAGAAGTATATGCCTCCTGAAGTTGCAGCTGCGCTTGAAAAGAATAAACAGTTGCTTAGTCAGATGGAAGGGAAGGAGGAAGTGAGTGATGATGCAACACCTCCCGCTACAGCGAGAGCGTAAGGCTCAACCAACTATAGAGTATGGTAAAAATTCTAATTGATTATTTTCCCGAAATGACAAGAGTTTTGTTAAATTTCAATTATGATTATACTATTGAAGGAAGTTAGAAAAAACGAAGGGATATATAGTTT</gDNA_template>
            <first_frame> A  I  T  F  S  C  I  A  G  F  I  V  I  V  L  N  Q  F  Q  D  Q  L  V  F  Y  L  T  P  T  D  A  L  E  K  H  A  E  N  P  T  R  S  K  F  R  L  G  G  L  V  L  E  N  S  V  T  P  I  P  N  S  P  E  M  E  F  V  I  T  D  L  I  T  D  I  L  V  K  Y  D  G  S  L  P  D  L  F  R  E  G  H  S  V  V  V  E  G  F  I  K  P  F  T  E  E  M  K  K  K  E  N  E  I  L  S  E  K  K  L  Q  L  T  E  K  A  R  S  G  D  C  Y  F  A  A  T  E  V  L  A  K  H  D  E  K  Y  M  P  P  E  V  A  A  A  L  E  K  N  K  Q  L  L  S  Q  M  E  G  K  E  E  V  S  D  D  A  T  P  P  A  T  A  R  A  *  G  S  T  N  Y  R  V  W  *  K  F  *  L  I  I  F  P  K  *  Q  E  F  C  *  I  S  I  M  I  I  L  L  K  E  V  R  K  N  E  G  I  Y  S   </first_frame>
            <second_frame>  P  S  H  S  A  A  *  Q  V  S  *  *  *  S  L  T  N  S  K  I  N  L  Y  S  I  *  P  L  R  M  L  *  K  N  T  L  K  I  L  Q  D  P  N  F  D  S  V  D  *  Y  *  K  I  V  *  H  Q  Y  P  I  P  Q  K  W  N  L  *  *  L  I  *  L  L  I  F  W  L  S  T  T  G  R  Y  Q  I  F  F  G  K  G  I  P  L  *  *  K  G  L  *  S  H  L  L  K  R  *  R  R  K  K  T  K  S  *  A  R  R  S  Y  N  *  L  R  R  R  E  V  G  T  V  I  L  Q  L  L  K  C  W  L  N  T  M  R  S  I  C  L  L  K  L  Q  L  R  L  K  R  I  N  S  C  L  V  R  W  K  G  R  R  K  *  V  M  M  Q  H  L  P  L  Q  R  E  R  K  A  Q  P  T  I  E  Y  G  K  N  S  N  *  L  F  S  R  N  D  K  S  F  V  K  F  Q  L  *  L  Y  Y  *  R  K  L  E  K  T  K  G  Y  I  V  </second_frame>
            <third_frame>   H  H  I  Q  L  H  S  R  F  H  S  N  S  P  *  P  I  P  R  S  T  C  I  L  F  N  P  Y  G  C  S  R  K  T  R  *  K  S  Y  K  I  Q  I  S  T  R  W  T  S  T  R  K  *  C  N  T  N  T  Q  F  P  R  N  G  I  C  D  N  *  F  D  Y  *  Y  F  G  *  V  R  R  V  V  T  R  S  F  S  G  R  A  F  R  C  S  R  R  V  Y  K  A  I  Y  *  R  D  E  E  E  R  K  R  N  L  E  R  E  E  V  T  T  N  *  E  G  E  K  W  G  L  L  F  C  S  Y  *  S  V  G  *  T  R  *  E  V  Y  A  S  *  S  C  S  C  A  *  K  E  *  T  V  A  *  S  D  G  R  E  G  G  S  E  *  *  C  N  T  S  R  Y  S  E  S  V  R  L  N  Q  L  *  S  M  V  K  I  L  I  D  Y  F  P  E  M  T  R  V  L  L  N  F  N  Y  D  Y  T  I  E  G  S  *  K  K  R  R  D  I  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42051" stop="41503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AITFSCIAGFIVIVLNQFQDQLVFYLTPTDALEKHAENPTRSKFRLGGLVLENSVTPIPNSPEMEFVITDLITDILVKYDGSLPDLFREGHSVVVEGFIKPFTEEMKKKENEILSEKKLQLTEKARSGDCYFAATEVLAKHDEKYMPPEVAAALEKNKQLLSQMEGKEEVSDDATPPATARA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43959" PGL_stop="44132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43959" e_stop="44132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="43959" e_stop="44132" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43959" stop="44132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTACTTAGCTTGCTCACTGAACTGTATTTCACTAAGTAAAATGTTCATAATTCTAAAATCTTACACTTCAATTATCTTGCTCATATACTACACAAAAACTAGAGCTCTTAAGTGCAAAGATCAATTTTTTACAACACAAGACTGTACATTGGCTAAGAACTAGACCTAGAA</gDNA_template>
            <first_frame> I  L  L  S  L  L  T  E  L  Y  F  T  K  *  N  V  H  N  S  K  I  L  H  F  N  Y  L  A  H  I  L  H  K  N  *  S  S  *  V  Q  R  S  I  F  Y  N  T  R  L  Y  I  G  *  E  L  D  L  E </first_frame>
            <second_frame>  F  Y  L  A  C  S  L  N  C  I  S  L  S  K  M  F  I  I  L  K  S  Y  T  S  I  I  L  L  I  Y  Y  T  K  T  R  A  L  K  C  K  D  Q  F  F  T  T  Q  D  C  T  L  A  K  N  *  T  *   </second_frame>
            <third_frame>   F  T  *  L  A  H  *  T  V  F  H  *  V  K  C  S  *  F  *  N  L  T  L  Q  L  S  C  S  Y  T  T  Q  K  L  E  L  L  S  A  K  I  N  F  L  Q  H  K  T  V  H  W  L  R  T  R  P  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0113I06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="46608" PGL_stop="44508"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46592" e_stop="46271"/>
            <exon e_start="45676" e_stop="45267"/>
            <exon e_start="45014" e_stop="44508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46592" e_stop="46271" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.914">
            <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45676" e_stop="45267" e_length="410"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45266" i_stop="45015" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45014" e_stop="44508" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46592" stop="46271"/>
              <exon start="45676" stop="45656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46576" stop="46271"/>
              <exon start="45676" stop="45278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46576" stop="46271"/>
              <exon start="45676" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46566" stop="46271"/>
              <exon start="45676" stop="45288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46564" stop="46271"/>
              <exon start="45676" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46508" stop="46271"/>
              <exon start="45676" stop="45421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46362" stop="46271"/>
              <exon start="45676" stop="45267"/>
              <exon start="45014" stop="44933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45676" stop="45267"/>
              <exon start="45014" stop="44939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45450" stop="45267"/>
              <exon start="45014" stop="44611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45450" stop="45267"/>
              <exon start="45014" stop="44612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44944" stop="44508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG : AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAG : ATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACCCTAAGGAGATTCCTCCGGGATACTCAATAGGAGAAGGAAGGATTGCTCCTCAACCCCCTTTTGTGATTTTCTTCATATTCGACTCTCTTGCACTCTTCATATCA</gDNA_template>
            <first_frame> V  V  Q  Q  N  V  C  V  K  K  M  T  K  Q  L  T  G  K  R  G  D  T  Q  I  H  S  V  V  R  S  G  N  L  E  L  V  L  E  I  I  T  C  C  N  E  A  E  L  I  E  L  L  S  K  Q  N  Q  S  G  E  N  A  L  Y  V  A  A  E  S  G  D  L  V  L  V  K  E  L  I  K  Y  Y  D  I  G  L  A  S  I  K  A  R  N  G  Y  D  A  F  H  V  A  A  K  Q  G  D  F   : E  M  V  K  V  L  L  E  A  F  P  Q  L  S  V  T  F  D  Q  S  N  S  T  A  L  H  T  A  S  A  Q  G  H  I  D  V  V  N  F  L  L  E  T  N  S  S  L  A  T  I  P  K  N  N  G  K  T  A  L  H  S  S  A  R  N  G  H  V  A  V  V  K  A  L  L  S  K  E  E  G  I  L  N  W  R  D  K  K  G  Q  T  A  L  H  M  A  V  K  G  Q  S  V  D  V  V  N  E  L  I  L  S  D  P  T  L  A  T  I  I  D  G  K  G  N  T  A  L  H  I  A  T  R  K  G  R  V  E  :  I  V  Q  A  V  V  K  D  K  R  M  K  W  D  A  I  N  K  S  G  E  T  A  L  D  V  A  E  K  A  R  N  S  E  I  A  A  I  L  K  E  H  G  V  L  T  A  K  N  M  K  L  A  L  P  T  R  S  A  K  E  L  K  Q  T  V  S  D  I  K  H  D  V  H  N  Q  L  E  H  T  F  Q  T  Q  K  R  V  K  N  I  A  K  R  L  N  K  M  H  T  E  G  L  N  N  A  I  N  S  T  T  V  V  A  V  L  I  A  T  V  T  F  A  A  I  F  N  L  P  G  Q  Y  T  D  N  P  K  E  I  P  P  G  Y  S  I  G  E  G  R  I  A  P  Q  P  P  F  V  I  F  F  I  F  D  S  L  A  L  F  I  S </first_frame>
            <second_frame>  L  C  S  K  M  F  V  *  K  R  *  Q  N  N  *  Q  E  K  E  E  T  H  K  S  I  Q  L  *  E  V  E  I  L  N  *  F  *  R  *  L  L  V  V  M  K  Q  N  *  L  N  Y  C  Q  N  R  T  N  L  V  K  M  L  F  M  L  L  L  N  L  V  I  W  F  W  L  R  N  *  S  S  I  M  I  L  V  *  L  V  L  R  L  E  M  D  M  M  L  F  M  L  L  L  N  K  V  I  L  :  K  W  *  R  Y  Y  W  R  H  F  L  S  C  Q  L  H  L  I  S  Q  I  P  Q  H  C  T  L  H  Q  H  K  V  T  L  M  L  S  I  S  S  W  R  L  I  A  V  *  P  P  Y  R  R  I  M  G  R  R  R  F  I  L  Q  Q  E  M  V  M  L  Q  L  *  R  H  F  *  A  K  K  K  G  F  *  I  G  E  I  R  R  D  K  Q  L  F  I  W  Q  S  K  A  K  V  L  M  S  L  T  S  L  F  Y  R  I  L  L  W  L  P  L  L  M  E  R  V  I  L  L  C  I  L  Q  R  V  K  A  V  *  R :   S  F  K  Q  S  *  R  T  N  E  *  S  G  M  P  S  I  N  L  V  K  L  L  L  T  L  L  R  K  R  E  I  Q  R  *  Q  R  F  *  R  S  M  V  S  *  L  Q  R  T  *  S  *  H  Y  Q  R  V  Q  P  K  N  *  N  K  L  L  V  T  *  N  T  T  F  T  I  S  *  S  T  L  S  K  H  R  K  E  *  R  T  *  R  S  V  *  T  K  C  T  Q  K  V  L  T  T  P  *  T  P  P  R  L  L  L  F  L  L  L  L  L  L  L  L  P  Y  L  I  Y  Q  V  N  I  P  T  T  L  R  R  F  L  R  D  T  Q  *  E  K  E  G  L  L  L  N  P  L  L  *  F  S  S  Y  S  T  L  L  H  S  S  Y   </second_frame>
            <third_frame>   C  A  A  K  C  L  C  E  K  D  D  K  T  I  N  R  K  K  R  R  H  T  N  P  F  S  C  K  K  W  K  S  *  I  S  F  R  D  N  Y  L  L  *  *  S  R  I  D  *  I  I  V  K  T  E  P  I  W  *  K  C  S  L  C  C  C  *  I  W  *  F  G  F  G  *  G  I  N  Q  V  L  *  Y  W  F  S  *  Y  *  G  *  K  W  I  *  C  F  S  C  C  C  *  T  R  *  F  * :   N  G  E  G  T  I  G  G  I  S  S  A  V  S  Y  I  *  S  V  K  F  H  S  I  A  H  C  I  S  T  R  S  H  *  C  C  Q  F  P  L  G  D  *  *  Q  F  S  H  H  T  E  E  *  W  E  D  G  A  S  F  F  S  K  K  W  S  C  C  S  C  E  G  T  S  K  Q  R  R  R  D  S  K  L  E  R  *  E  G  T  N  S  S  S  Y  G  S  Q  R  P  K  C  *  C  R  *  R  A  Y  S  I  G  S  Y  F  G  Y  H  Y  *  W  K  G  *  Y  C  S  A  Y  C  N  A  *  R  P  C  R   : D  R  S  S  S  R  K  G  Q  T  N  E  V  G  C  H  Q  *  I  W  *  N  C  S  *  R  C  *  E  S  A  K  F  R  D  S  S  D  S  K  G  A  W  C  P  D  C  K  E  H  E  A  S  I  T  N  A  F  S  Q  R  T  E  T  N  C  *  *  H  K  T  R  R  S  Q  S  V  R  A  H  F  P  N  T  E  K  S  E  E  H  S  E  A  S  E  Q  N  A  H  R  R  S  *  Q  R  H  K  L  H  H  G  C  C  C  S  Y  C  Y  C  Y  F  C  C  H  I  *  S  T  R  S  I  Y  R  Q  P  *  G  D  S  S  G  I  L  N  R  R  R  K  D  C  S  S  T  P  F  C  D  F  L  H  I  R  L  S  C  T  L  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46592" stop="46271"/>
                    <exon start="45676" stop="45267"/>
                    <exon start="45014" stop="44508"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1239</number_coding_nucleotides>
                  <number_encoded_amino_acids>413</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVQQNVCVKKMTKQLTGKRGDTQIHSVVRSGNLELVLEIITCCNEAELIELLSKQNQSGENALYVAAESGDLVLVKELIKYYDIGLASIKARNGYDAFHVAAKQGDFEMVKVLLEAFPQLSVTFDQSNSTALHTASAQGHIDVVNFLLETNSSLATIPKNNGKTALHSSARNGHVAVVKALLSKEEGILNWRDKKGQTALHMAVKGQSVDVVNELILSDPTLATIIDGKGNTALHIATRKGRVEIVQAVVKDKRMKWDAINKSGETALDVAEKARNSEIAAILKEHGVLTAKNMKLALPTRSAKELKQTVSDIKHDVHNQLEHTFQTQKRVKNIAKRLNKMHTEGLNNAINSTTVVAVLIATVTFAAIFNLPGQYTDNPKEIPPGYSIGEGRIAPQPPFVIFFIFDSLALFIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46608" e_stop="46045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46608" e_stop="46045" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46608" stop="46045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGATGGATTCCTCTGTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCT</gDNA_template>
            <first_frame> *  D  G  F  L  C  C  A  A  K  C  L  C  E  K  D  D  K  T  I  N  R  K  K  R  R  H  T  N  P  F  S  C  K  K  W  K  S  *  I  S  F  R  D  N  Y  L  L  *  *  S  R  I  D  *  I  I  V  K  T  E  P  I  W  *  K  C  S  L  C  C  C  *  I  W  *  F  G  F  G  *  G  I  N  Q  V  L  *  Y  W  F  S  *  Y  *  G  *  K  W  I  *  C  F  S  C  C  C  *  T  R  *  F  W  *  V  F  S  F  F  F  F  I  L  F  F  A  N  L  *  L  V  W  N  *  G  V  V  C  S  S  G  C  F  V  M  V  F  H  Y  V  *  I  F  H  L  S  *  V  C  D  L  T  V  N  E  K  R  G  I  *  I  T  N  L  F  G  I  E  A  S  *  F  L  F  F  H  F  S </first_frame>
            <second_frame>  K  M  D  S  S  V  V  Q  Q  N  V  C  V  K  K  M  T  K  Q  L  T  G  K  R  G  D  T  Q  I  H  S  V  V  R  S  G  N  L  E  L  V  L  E  I  I  T  C  C  N  E  A  E  L  I  E  L  L  S  K  Q  N  Q  S  G  E  N  A  L  Y  V  A  A  E  S  G  D  L  V  L  V  K  E  L  I  K  Y  Y  D  I  G  L  A  S  I  K  A  R  N  G  Y  D  A  F  H  V  A  A  K  Q  G  D  F  G  K  C  L  V  F  F  S  S  Y  Y  S  S  R  I  F  N  L  F  G  I  E  A  L  Y  V  A  V  V  V  L  L  W  F  F  I  M  Y  E  F  F  I  Y  H  K  Y  V  T  *  Q  L  M  K  K  E  E  Y  R  L  Q  T  C  L  G  L  R  R  R  S  S  C  F  F  I  F   </second_frame>
            <third_frame>   R  W  I  P  L  L  C  S  K  M  F  V  *  K  R  *  Q  N  N  *  Q  E  K  E  E  T  H  K  S  I  Q  L  *  E  V  E  I  L  N  *  F  *  R  *  L  L  V  V  M  K  Q  N  *  L  N  Y  C  Q  N  R  T  N  L  V  K  M  L  F  M  L  L  L  N  L  V  I  W  F  W  L  R  N  *  S  S  I  M  I  L  V  *  L  V  L  R  L  E  M  D  M  M  L  F  M  L  L  L  N  K  V  I  L  V  S  V  *  F  F  F  L  H  I  I  L  R  E  S  L  T  C  L  E  L  R  R  C  M  *  Q  W  L  F  C  Y  G  F  S  L  C  M  N  F  S  F  I  I  S  M  *  P  N  S  *  *  K  K  R  N  I  D  Y  K  L  V  W  D  *  G  V  V  V  L  V  F  S  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46607" stop="46125"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMDSSVVQQNVCVKKMTKQLTGKRGDTQIHSVVRSGNLELVLEIITCCNEAELIELLSKQNQSGENALYVAAESGDLVLVKELIKYYDIGLASIKARNGYDAFHVAAKQGDFGKCLVFFSSYYSSRIFNLFGIEALYVAVVVLLWFFIMYEFFIYHKYVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="51775" PGL_stop="56899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51775" e_stop="52180"/>
            <exon e_start="53805" e_stop="54156"/>
            <exon e_start="54237" e_stop="54447"/>
            <exon e_start="54583" e_stop="54651"/>
            <exon e_start="56410" e_stop="56899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51775" e_stop="52180" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52181" i_stop="53804" i_length="1624"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53805" e_stop="54156" e_length="352"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54157" i_stop="54236" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54237" e_stop="54447" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.967">
            <gDNA_intron_boundary i_start="54448" i_stop="54582" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54583" e_stop="54651" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54652" i_stop="56409" i_length="1758"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="56410" e_stop="56899" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51775" stop="52180"/>
              <exon start="53805" stop="54156"/>
              <exon start="54237" stop="54447"/>
              <exon start="54583" stop="54651"/>
              <exon start="56410" stop="56899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51787" stop="52180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51817" stop="52180"/>
              <exon start="53805" stop="54123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53884" stop="54156"/>
              <exon start="54237" stop="54447"/>
              <exon start="54583" stop="54651"/>
              <exon start="56410" stop="56458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53884" stop="54156"/>
              <exon start="54237" stop="54447"/>
              <exon start="54583" stop="54651"/>
              <exon start="56410" stop="56443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53896" stop="54156"/>
              <exon start="54237" stop="54447"/>
              <exon start="54583" stop="54651"/>
              <exon start="56410" stop="56452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCTAGTCACGGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATG : ATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAG : GTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAG : ATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAG : GCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATGACTTGTTTGTTTGTGGAACTCAGGCTGGTTTATTGTCTACTTGCAGCGAAAATAACGTCTTCAATCCATCTGAGTTCTACCAAACCTGGACTGTTGAACGTCCCAGCGATGATCTCAAACACTACCTTCAACATTGTACAGGATGGCAGTGTATTCCGCGGCCAAATTGATCAGCCTTTCTCCAGCTGTTTAGGATAACGTACATGAACAGAGACGGTAGCTTCAACGTGTAAAGCATCTACTACTACAACGTCGTTTATCATCGATTTGTTGTTGCTATCATCTCTTGTCTATTGTTGTCATTATATCTATGTATTATGTTAAACATAAACTACAATCATTGAAGTAAGAAAAAAATCCTAAAAAATCTCATACTTTTAGCCTCTTTGGTGTGAACCTTAACCAATTTGTTTATTCAATGAAGTTGGTGGCAAGTAAATA</gDNA_template>
            <first_frame> R  A  S  H  G  K  S  V  G  K  V  S  V  S  R  M  I  E  R  Q  E  R  E  *  E  F  *  W  K  K  K  S  F  N  L  F  G  V  K  H  H  N  N  Q  Y  Y  E  L  L  V  I  V  I  V  Y  *  M  G  N  H  H  G  R  F  S  H  S  K  H  H  H  H  H  H  N  Q  Q  G  P  P  F  F  V  P  T  Q  Q  T  Q  N  T  Q  M  G  I  A  L  P  Y  A  N  V  D  S  N  L  R  G  L  A  G  Q  A  E  G  F  G  G  S  S  I  G  G  R  D  G  H  V  Y  Q  V  L  N  L  N   : D  D  G  P  G  S  L  R  D  G  C  R  K  K  E  P  L  W  I  V  F  E  V  S  G  T  I  E  L  R  S  H  L  S  V  S  S  F  K  T  I  D  G  R  G  Q  K  I  K  L  T  G  K  G  L  R  L  K  E  C  E  H  V  I  I  C  N  L  E  F  E  G  G  R  G  H  D  V  D  G  I  Q  I  K  P  K  S  R  H  I  W  I  D  R  C  S  L  S  D  Y  D  D  G  L  I  D  I  T  K  E  S  T  D  I  T  V  S  R :   C  H  F  S  K  H  D  K  T  M  L  I  G  G  D  S  S  N  C  G  D  R  C  M  R  V  T  I  H  H  C  F  F  D  G  T  R  Q  R  H  P  R  V  R  F  A  K  V  H  L  Y  N  N  Y  T  R  N  W  G  I  Y  A  V  C  A  S  V  E  S  Q  :  I  Y  S  Q  C  N  I  Y  E  A  G  Q  K  K  V  A  F  K  Y  L  T  E  K  :  A  A  D  K  E  E  A  C  T  G  S  I  K  S  E  D  D  L  F  V  C  G  T  Q  A  G  L  L  S  T  C  S  E  N  N  V  F  N  P  S  E  F  Y  Q  T  W  T  V  E  R  P  S  D  D  L  K  H  Y  L  Q  H  C  T  G  W  Q  C  I  P  R  P  N  *  S  A  F  L  Q  L  F  R  I  T  Y  M  N  R  D  G  S  F  N  V  *  S  I  Y  Y  Y  N  V  V  Y  H  R  F  V  V  A  I  I  S  C  L  L  L  S  L  Y  L  C  I  M  L  N  I  N  Y  N  H  *  S  K  K  K  I  L  K  N  L  I  L  L  A  S  L  V  *  T  L  T  N  L  F  I  Q  *  S  W  W  Q  V  N  </first_frame>
            <second_frame>  E  L  V  T  E  R  V  S  A  R  F  Q  F  Q  E  *  *  R  D  K  K  E  S  E  S  F  N  G  K  K  K  V  S  I  F  L  A  L  N  I  I  I  I  N  T  M  S  Y  *  *  *  *  *  C  I  K  W  G  T  T  M  A  V  S  L  T  V  N  I  I  I  I  I  I  I  N  K  V  P  H  F  L  Y  L  H  N  K  P  K  I  P  R  W  V  *  L  C  L  M  L  M  L  I  P  I  C  V  V  L  L  V  K  L  R  V  L  V  V  L  P  L  V  V  V  M  V  M  F  I  K  F  L  I  L  M  :  M  M  G  Q  D  H  F  E  M  D  V  V  K  K  N  L  C  G  S  S  L  K  F  Q  G  L  L  S  S  V  L  I  *  V  C  P  L  S  K  L  L  T  G  E  A  K  K  S  N  S  L  G  K  G  *  G  *  K  N  V  N  M  L  L  S  A  I  *  S  L  R  E  V  E  D  M  M  L  M  A  F  R  L  N  Q  N  R  G  I  F  G  *  I  V  V  A  L  A  T  M  T  M  V  *  L  T  S  Q  K  R  A  Q  I  L  L  F  L   : G  V  T  F  Q  S  M  T  K  Q  C  L  L  E  E  I  L  L  I  V  V  T  D  V  *  G  S  P  F  T  I  V  F  L  T  E  L  D  S  G  I  L  V  L  G  L  P  K  Y  I  C  T  I  T  T  L  G  T  G  E  F  M  L  F  V  L  V  *  N  H  R :   Y  I  H  N  A  I  Y  M  K  L  D  K  K  R  W  P  S  N  I  *  Q  R  R :   Q  L  I  R  K  K  H  V  L  V  A  L  N  L  K  M  T  C  L  F  V  E  L  R  L  V  Y  C  L  L  A  A  K  I  T  S  S  I  H  L  S  S  T  K  P  G  L  L  N  V  P  A  M  I  S  N  T  T  F  N  I  V  Q  D  G  S  V  F  R  G  Q  I  D  Q  P  F  S  S  C  L  G  *  R  T  *  T  E  T  V  A  S  T  C  K  A  S  T  T  T  T  S  F  I  I  D  L  L  L  L  S  S  L  V  Y  C  C  H  Y  I  Y  V  L  C  *  T  *  T  T  I  I  E  V  R  K  K  S  *  K  I  S  Y  F  *  P  L  W  C  E  P  *  P  I  C  L  F  N  E  V  G  G  K  *  I </second_frame>
            <third_frame>   S  *  S  R  K  E  C  R  Q  G  F  S  F  K  N  D  R  E  T  R  K  R  V  R  V  L  M  E  K  K  K  F  Q  S  F  W  R  *  T  S  *  *  S  I  L  *  V  T  S  D  S  N  S  V  L  N  G  E  P  P  W  P  F  L  S  Q  *  T  S  S  S  S  S  *  S  T  R  S  P  I  F  C  T  Y  T  T  N  P  K  Y  P  D  G  Y  S  F  A  L  C  *  C  *  F  Q  F  A  W  S  C  W  S  S  *  G  F  W  W  F  F  H  W  W  S  *  W  S  C  L  S  S  S  *  S  *  * :   *  W  A  R  I  T  S  R  W  M  S  *  K  R  T  F  V  D  R  L  *  S  F  R  D  Y  *  A  P  F  S  F  E  C  V  L  F  Q  N  Y  *  R  A  R  P  K  N  Q  T  H  W  E  R  V  E  V  E  R  M  *  T  C  Y  Y  L  Q  S  R  V  *  G  R  *  R  T  *  C  *  W  H  S  D  *  T  K  I  E  A  Y  L  D  R  S  L  *  P  *  R  L  *  R  W  F  N  *  H  H  K  R  E  H  R  Y  Y  C  F  *  :  V  S  L  F  K  A  *  Q  N  N  A  Y  W  R  R  F  F  *  L  W  *  Q  M  Y  E  G  H  H  S  P  L  F  F  *  R  N  *  T  A  A  S  S  C  *  V  C  Q  S  T  F  V  Q  *  L  H  *  E  L  G  N  L  C  C  L  C  *  C  R  I  T   : D  I  F  T  M  Q  Y  I  *  S  W  T  K  K  G  G  L  Q  I  S  N  R  E   : G  S  *  *  G  R  S  M  Y  W  *  H  *  I  *  R  *  L  V  C  L  W  N  S  G  W  F  I  V  Y  L  Q  R  K  *  R  L  Q  S  I  *  V  L  P  N  L  D  C  *  T  S  Q  R  *  S  Q  T  L  P  S  T  L  Y  R  M  A  V  Y  S  A  A  K  L  I  S  L  S  P  A  V  *  D  N  V  H  E  Q  R  R  *  L  Q  R  V  K  H  L  L  L  Q  R  R  L  S  S  I  C  C  C  Y  H  L  L  S  I  V  V  I  I  S  M  Y  Y  V  K  H  K  L  Q  S  L  K  *  E  K  N  P  K  K  S  H  T  F  S  L  F  G  V  N  L  N  Q  F  V  Y  S  M  K  L  V  A  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51943" stop="52180"/>
                    <exon start="53805" stop="54156"/>
                    <exon start="54237" stop="54447"/>
                    <exon start="54583" stop="54651"/>
                    <exon start="56410" stop="56628"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGNHHGRFSHSKHHHHHHNQQGPPFFVPTQQTQNTQMGIALPYANVDSNLRGLAGQAEGFGGSSIGGRDGHVYQVLNLNDDGPGSLRDGCRKKEPLWIVFEVSGTIELRSHLSVSSFKTIDGRGQKIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLSDYDDGLIDITKESTDITVSRCHFSKHDKTMLIGGDSSNCGDRCMRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKAADKEEACTGSIKSEDDLFVCGTQAGLLSTCSENNVFNPSEFYQTWTVERPSDDLKHYLQHCTGWQCIPRPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="75248" PGL_stop="74174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75248" e_stop="74174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="75248" e_stop="74174" e_length="1075"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75248" stop="74646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75042" stop="74359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74827" stop="74215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74808" stop="74174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAAGATGGAGCTATGATTCTGTTTAGCTTTCCAGAAATTGTGGCGAAAAACAGTAAGAAGTCGCCAGAAAAAGTGTTCCGTATTCTTGATATGTACAATTCAATCGTCGAACACTGGACGGAGATTGAAACTACATTCGAATCTGCTATCCGATCTCAAGCGATGACGTCTCTCGTTAAGCTTGGTGAGTTTATAAGGATGGCTTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGATGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGTTGAGTCATCCCCATCACGTACAATACCATCACAACTGCAGTGAAATTTTTTTTTAGAGTAATTGTTTATTTTTCTTT</gDNA_template>
            <first_frame> S  K  D  G  A  M  I  L  F  S  F  P  E  I  V  A  K  N  S  K  K  S  P  E  K  V  F  R  I  L  D  M  Y  N  S  I  V  E  H  W  T  E  I  E  T  T  F  E  S  A  I  R  S  Q  A  M  T  S  L  V  K  L  G  E  F  I  R  M  A  L  A  E  F  E  T  A  L  Q  K  E  S  S  K  T  T  V  A  G  G  G  I  H  A  L  T  I  D  T  M  N  Y  I  I  L  L  A  D  Y  S  Y  V  L  S  D  I  L  D  E  S  P  P  P  A  K  S  S  L  P  E  S  Y  F  G  M  A  D  S  D  E  S  P  A  P  A  I  S  L  R  F  A  W  L  I  L  I  L  L  C  K  L  D  G  K  A  K  H  Y  K  D  V  S  L  A  Y  L  F  L  A  N  N  L  R  Y  I  V  V  K  V  R  S  S  N  L  K  Y  L  L  G  E  N  W  I  S  K  Q  E  Q  K  I  K  K  F  A  S  N  Y  E  Q  L  G  W  S  H  V  I  Q  S  L  P  R  E  P  N  A  S  M  T  P  Q  Q  V  K  E  I  F  K  R  F  N  S  S  F  E  Q  V  H  R  K  Q  S  L  Y  V  V  P  N  S  K  L  R  D  D  L  K  V  S  I  A  R  K  I  L  P  V  Y  R  E  F  Y  N  I  H  K  N  T  I  A  K  E  R  Y  S  S  H  V  I  K  Y  S  P  E  D  L  A  H  Y  L  S  D  L  F  F  G  P  I  E  L  G  S  S  S  S  V  E  S  S  P  S  R  T  I  P  S  Q  L  Q  *  N  F  F  L  E  *  L  F  I  F  L  </first_frame>
            <second_frame>  Q  K  M  E  L  *  F  C  L  A  F  Q  K  L  W  R  K  T  V  R  S  R  Q  K  K  C  S  V  F  L  I  C  T  I  Q  S  S  N  T  G  R  R  L  K  L  H  S  N  L  L  S  D  L  K  R  *  R  L  S  L  S  L  V  S  L  *  G  W  L  W  L  N  L  K  P  L  F  K  R  N  R  L  R  R  Q  L  P  A  V  E  S  M  L  S  L  L  T  Q  *  I  T  S  F  Y  L  P  T  T  A  T  Y  S  L  T  S  L  M  S  L  L  L  R  L  K  V  H  C  L  N  H  I  S  V  W  L  I  P  M  S  L  R  H  R  Q  S  H  S  D  L  L  G  *  F  S  F  F  S  A  N  S  T  A  K  Q  S  T  T  R  T  F  H  S  R  T  S  S  *  Q  T  I  S  D  T  S  S  *  K  S  V  H  R  I  S  S  T  C  *  V  K  I  G  Y  Q  N  K  S  K  K  S  K  S  L  P  P  I  M  N  N  *  D  G  A  T  *  S  N  L  Y  R  E  N  Q  T  P  Q  *  L  H  N  K  *  K  K  Y  S  R  D  S  I  H  H  S  S  K  F  I  G  S  N  L  S  T  S  Y  Q  I  V  S  S  E  M  I  *  K  C  R  L  Q  G  K  Y  F  R  C  I  E  S  F  T  I  Y  I  K  I  R  *  Q  K  R  D  I  R  V  M  *  S  N  I  L  R  K  I  *  H  I  I  C  P  I  Y  F  L  D  R  L  N  W  E  V  H  R  Q  L  S  H  P  H  H  V  Q  Y  H  H  N  C  S  E  I  F  F  *  S  N  C  L  F  F  F </second_frame>
            <third_frame>   K  R  W  S  Y  D  S  V  *  L  S  R  N  C  G  E  K  Q  *  E  V  A  R  K  S  V  P  Y  S  *  Y  V  Q  F  N  R  R  T  L  D  G  D  *  N  Y  I  R  I  C  Y  P  I  S  S  D  D  V  S  R  *  A  W  *  V  Y  K  D  G  F  G  *  I  *  N  R  S  S  K  G  I  V  *  D  D  S  C  R  R  W  N  P  C  S  H  Y  *  H  N  E  L  H  H  S  T  C  R  L  Q  L  R  T  L  *  H  P  *  *  V  S  S  S  G  *  K  F  I  A  *  I  I  F  R  Y  G  *  F  R  *  V  S  G  T  G  N  L  T  P  I  C  L  V  D  S  H  S  S  L  Q  T  R  R  Q  S  K  A  L  Q  G  R  F  T  R  V  P  L  L  S  K  Q  S  P  I  H  R  R  K  S  P  F  I  E  S  Q  V  L  A  R  *  K  L  D  I  K  T  R  A  K  N  Q  K  V  C  L  Q  L  *  T  T  R  M  E  P  R  N  P  I  S  T  A  R  T  K  R  L  N  D  S  T  T  S  E  R  N  I  Q  E  I  Q  F  I  I  R  A  S  S  S  E  A  I  S  L  R  R  T  K  *  *  A  P  R  *  F  E  S  V  D  C  K  E  N  T  S  G  V  *  R  V  L  Q  Y  T  *  K  Y  D  S  K  R  E  I  F  E  S  C  D  Q  I  F  S  G  R  F  S  T  L  F  V  R  F  I  F  W  T  D  *  I  G  K  F  I  V  S  *  V  I  P  I  T  Y  N  T  I  T  T  A  V  K  F  F  F  R  V  I  V  Y  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75248" stop="74208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKDGAMILFSFPEIVAKNSKKSPEKVFRILDMYNSIVEHWTEIETTFESAIRSQAMTSLVKLGEFIRMALAEFETALQKESSKTTVAGGGIHALTIDTMNYIILLADYSYVLSDILDESPPPAKSSLPESYFGMADSDESPAPAISLRFAWLILILLCKLDGKAKHYKDVSLAYLFLANNLRYIVVKVRSSNLKYLLGENWISKQEQKIKKFASNYEQLGWSHVIQSLPREPNASMTPQQVKEIFKRFNSSFEQVHRKQSLYVVPNSKLRDDLKVSIARKILPVYREFYNIHKNTIAKERYSSHVIKYSPEDLAHYLSDLFFGPIELGSSSSVESSPSRTIPSQLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="76243" PGL_stop="75532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76243" e_stop="75532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76243" e_stop="75532" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76243" stop="75560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76241" stop="75532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76241" stop="75958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTAATGTTGTAATGGCGGATTTGAGATTGAT</gDNA_template>
            <first_frame> S  F  Y  S  T  L  H  L  Y  I  Q  K  L  Y  T  K  F  F  *  L  F  R  Y  R  N  N  K  I  H  S  I  I  S  Q  N  I  T  R  K  S  C  R  E  K  E  *  E  H  *  I  G  F  H  Q  N  T  I  Q  Q  L  M  L  I  L  H  L  L  H  N  S  H  L  L  P  D  S  P  F  R  H  P  D  R  V  F  L  K  Q  *  L  I  E  R  S  R  W  L  S  R  *  S  R  N  G  I  L  I  L  P  P  S  R  R  *  L  L  C  S  M  K  I  E  K  K  L  R  I  S  L  N  M  *  I  I  Y  I  R  L  C  I  F  M  L  V  R  I  P  D  L  I  S  L  F  V  L  N  R  *  C  K  S  R  *  N  D  C  R  R  S  F  I  R  F  Y  Q  S  T  E  H  F  W  I  L  N  L  Y  P  L  C  L  H  V  L  R  *  V  L  D  R  V  P  L  N  L  T  L  K  M  M  M  I  I  V  L  Q  L  L  V  N  L  L  M  K  L  R  I  F  L  M  L  *  W  R  I  *  D  *  </first_frame>
            <second_frame>  H  F  T  L  L  F  I  Y  T  S  K  N  Y  I  P  N  F  F  D  Y  F  A  I  A  I  T  K  S  T  Q  L  F  L  K  T  *  H  E  N  H  A  E  K  R  N  E  N  T  E  L  V  F  T  K  T  Q  F  S  N  *  C  *  F  S  I  Y  F  T  I  L  I  S  F  P  I  R  L  F  A  I  Q  T  E  F  F  *  S  S  D  *  S  N  D  R  D  G  *  A  D  D  H  E  M  G  S  *  Y  Y  H  L  R  E  G  D  F  S  V  L  *  K  S  K  R  S  *  G  F  H  *  I  C  E  *  S  T  *  G  Y  A  F  S  C  *  *  E  F  Q  I  *  *  A  C  S  C  S  I  V  D  A  N  R  D  E  T  T  A  E  G  V  L  S  D  F  I  N  Q  Q  S  T  F  G  S  *  I  Y  I  H  C  V  F  T  Y  F  D  K  Y  S  I  E  Y  L  *  I  *  R  *  R  *  *  *  *  S  C  C  N  C  W  *  I  Y  *  *  S  *  G  Y  F  *  C  C  N  G  G  F  E  I  D </second_frame>
            <third_frame>   I  L  L  Y  S  S  F  I  H  P  K  T  I  Y  Q  I  F  L  I  I  S  L  S  Q  *  Q  N  P  L  N  Y  F  S  K  H  N  T  K  I  M  P  R  K  G  M  R  T  L  N  W  F  S  P  K  H  N  S  A  T  D  V  N  S  P  S  T  S  Q  F  S  S  P  S  R  F  A  F  S  P  S  R  P  S  F  S  E  A  V  I  D  R  T  I  E  M  A  E  Q  M  I  T  K  W  D  P  D  T  T  T  F  A  K  V  T  S  L  F  Y  E  N  R  K  E  A  K  D  F  I  K  Y  V  N  N  L  H  K  A  M  H  F  H  A  S  E  N  S  R  S  D  K  L  V  R  A  Q  S  L  M  Q  I  A  M  K  R  L  Q  K  E  F  Y  Q  I  L  S  I  N  R  A  L  L  D  P  E  S  I  S  T  V  S  S  R  T  S  I  S  T  R  S  S  T  S  E  F  N  V  E  D  D  D  D  N  R  V  A  I  A  G  E  S  I  N  E  V  E  D  I  S  N  V  V  M  A  D  L  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76166" stop="75534"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNPLNYFSKHNTKIMPRKGMRTLNWFSPKHNSATDVNSPSTSQFSSPSRFAFSPSRPSFSEAVIDRTIEMAEQMITKWDPDTTTFAKVTSLFYENRKEAKDFIKYVNNLHKAMHFHASENSRSDKLVRAQSLMQIAMKRLQKEFYQILSINRALLDPESISTVSSRTSISTRSSTSEFNVEDDDDNRVAIAGESINEVEDISNVVMADLRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="90044" PGL_stop="94319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90044" e_stop="90798"/>
            <exon e_start="91226" e_stop="91373"/>
            <exon e_start="91478" e_stop="91557"/>
            <exon e_start="92647" e_stop="92730"/>
            <exon e_start="92813" e_stop="92887"/>
            <exon e_start="94230" e_stop="94319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.702" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90044" e_stop="90798" e_length="755"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90799" i_stop="91225" i_length="427"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91226" e_stop="91373" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.702" acc_prob="0.937">
            <gDNA_intron_boundary i_start="91374" i_stop="91477" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91478" e_stop="91557" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91558" i_stop="92646" i_length="1089"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92647" e_stop="92730" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92731" i_stop="92812" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92813" e_stop="92887" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="92888" i_stop="94229" i_length="1342"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="94230" e_stop="94319" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90044" stop="90503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90083" stop="90535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90473" stop="90798"/>
              <exon start="91226" stop="91373"/>
              <exon start="91478" stop="91557"/>
              <exon start="92647" stop="92730"/>
              <exon start="92813" stop="92887"/>
              <exon start="94230" stop="94288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90520" stop="90798"/>
              <exon start="91226" stop="91373"/>
              <exon start="91478" stop="91557"/>
              <exon start="92647" stop="92730"/>
              <exon start="92813" stop="92887"/>
              <exon start="94230" stop="94319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90750" stop="90798"/>
              <exon start="91226" stop="91373"/>
              <exon start="91478" stop="91557"/>
              <exon start="92647" stop="92730"/>
              <exon start="92813" stop="92887"/>
              <exon start="94230" stop="94286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90750" stop="90798"/>
              <exon start="91226" stop="91373"/>
              <exon start="91478" stop="91557"/>
              <exon start="92647" stop="92730"/>
              <exon start="92813" stop="92887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTCATCTTCTTCAAACAATTCTTGTCACCTTAAAAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAAGAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGATGAGGATTGTGGTGACTGGTGGTGCTGGATTTGTGGGGAGTCATTTAGTGGATAAGTTGATTAAGAGAGGTGATGATGTTATTGTGATTGATAATTTCTTTACGGGTAGGAAAGAAAATGTGAAACATCATTTTGGGAATCCAAGATTTGAGCTTATTAGGCATGATGTTGTTGAGCCTATCTTGTTAGAAGTAGATCAGATTTACCATTTGGCTTGTCCTGCTTCTCCAGTTCACTACAAGTATAATCCTGTCAAAACTATT : AAGACAAATGTGATGGGCACCCTTAACATGTTGGGGCTTGCCAAGAGAATTGGTGCTAAGTTCTTGCTTACCAGTACAAGTGAGGTTTATGGTGATCCGCTTGAGCATCCTCAAAAGGAAACATATTGGGGTCATGTGAATCCAATAG : GTGTTAGGAGCTGCTATGACGAGGGAAAACGGACTGCGGAAACCTTGACTATGGATTACCATCGCGGTGCAAATGTCGAG : GTTCGTATTGCTCGGATTTTCAATACATACGGACCTCGTATGTGTTTAGATGATGGACGTGTTGTCAGCAACTTTGTTGCGCAG : GCCATCCGCAAGCAACCAATGACAGTATATGGGGATGGAAAGCAAACTCGAAGTTTTCAATTCGTCTCTGATCTG : GTTGATGGATTAGTGGCCCTCATGGATGGTGAGCACATTGGCCCTTTCAACTTGGGAAATCCAGGAGAATTTACCATGTTGGAGCTTGCT</gDNA_template>
            <first_frame> F  F  F  I  F  F  K  Q  F  L  S  P  *  K  H  S  K  I  I  Q  I  F  S  Y  K  S  *  I  F  F  H  F  Y  H  F  P  I  L  D  L  Q  K  K  L  *  N  C  T  N  S  Q  V  E  E  M  R  I  Y  P  I  L  N  H  T  H  Q  R  P  *  N  T  Q  E  D  L  F  P  D  P  S  I  I  S  S  K  N  K  D  F  C  S  F  L  L  V  F  *  L  V  Q  L  F  S  S  F  N  L  V  Y  L  I  L  A  H  L  L  N  H  I  L  Q  Y  P  D  H  I  M  L  *  I  M  N  L  Y  Q  N  *  L  H  I  M  I  K  M  *  A  L  G  *  M  G  L  L  G  G  F  Q  L  G  L  G  G  K  G  *  G  L  W  *  L  V  V  L  D  L  W  G  V  I  *  W  I  S  *  L  R  E  V  M  M  L  L  *  L  I  I  S  L  R  V  G  K  K  M  *  N  I  I  L  G  I  Q  D  L  S  L  L  G  M  M  L  L  S  L  S  C  *  K  *  I  R  F  T  I  W  L  V  L  L  L  Q  F  T  T  S  I  I  L  S  K  L  L :   R  Q  M  *  W  A  P  L  T  C  W  G  L  P  R  E  L  V  L  S  S  C  L  P  V  Q  V  R  F  M  V  I  R  L  S  I  L  K  R  K  H  I  G  V  M  *  I  Q  *  :  V  L  G  A  A  M  T  R  E  N  G  L  R  K  P  *  L  W  I  T  I  A  V  Q  M  S  R :   F  V  L  L  G  F  S  I  H  T  D  L  V  C  V  *  M  M  D  V  L  S  A  T  L  L  R  R :   P  S  A  S  N  Q  *  Q  Y  M  G  M  E  S  K  L  E  V  F  N  S  S  L  I  W :   L  M  D  *  W  P  S  W  M  V  S  T  L  A  L  S  T  W  E  I  Q  E  N  L  P  C  W  S  L   </first_frame>
            <second_frame>  F  F  S  S  S  S  N  N  S  C  H  L  K  N  T  Q  K  S  Y  K  F  S  V  T  N  L  E  F  F  S  T  F  T  I  S  P  F  L  I  C  K  K  S  Y  E  I  V  Q  T  V  K  *  K  R  *  G  F  T  Q  F  S  T  I  L  T  K  D  L  E  I  P  K  R  I  S  S  Q  I  H  Q  L  S  P  Q  R  T  K  T  S  V  H  S  C  W  Y  S  N  W  F  N  F  F  H  H  S  T  *  S  I  S  S  *  H  I  F  *  T  T  F  F  N  T  Q  I  I  *  C  F  K  S  *  I  F  I  K  I  S  F  I  *  *  *  R  C  K  L  *  G  E  W  G  Y  W  E  G  S  S  W  G  W  E  E  K  D  E  D  C  G  D  W  W  C  W  I  C  G  E  S  F  S  G  *  V  D  *  E  R  *  *  C  Y  C  D  *  *  F  L  Y  G  *  E  R  K  C  E  T  S  F  W  E  S  K  I  *  A  Y  *  A  *  C  C  *  A  Y  L  V  R  S  R  S  D  L  P  F  G  L  S  C  F  S  S  S  L  Q  V  *  S  C  Q  N  Y   : *  D  K  C  D  G  H  P  *  H  V  G  A  C  Q  E  N  W  C  *  V  L  A  Y  Q  Y  K  *  G  L  W  *  S  A  *  A  S  S  K  G  N  I  L  G  S  C  E  S  N  R :   C  *  E  L  L  *  R  G  K  T  D  C  G  N  L  D  Y  G  L  P  S  R  C  K  C  R   : G  S  Y  C  S  D  F  Q  Y  I  R  T  S  Y  V  F  R  *  W  T  C  C  Q  Q  L  C  C  A   : G  H  P  Q  A  T  N  D  S  I  W  G  W  K  A  N  S  K  F  S  I  R  L  *  S   : G  *  W  I  S  G  P  H  G  W  *  A  H  W  P  F  Q  L  G  K  S  R  R  I  Y  H  V  G  A  C  </second_frame>
            <third_frame>   F  F  H  L  L  Q  T  I  L  V  T  L  K  T  L  K  N  H  T  N  F  Q  L  Q  I  L  N  F  F  P  L  L  P  F  P  H  S  *  F  A  K  K  A  M  K  L  Y  K  Q  S  S  R  R  D  E  D  L  P  N  S  Q  P  Y  S  P  K  T  L  K  Y  P  R  G  S  L  P  R  S  I  N  Y  L  L  K  E  Q  R  L  L  F  I  L  V  G  I  L  I  G  S  T  F  F  I  I  Q  P  S  L  S  H  L  S  T  S  S  E  P  H  S  S  I  P  R  S  Y  N  A  L  N  H  E  S  L  S  K  L  A  S  Y  N  D  K  D  V  S  F  R  V  N  G  V  T  G  R  V  P  V  G  V  G  R  K  R  M  R  I  V  V  T  G  G  A  G  F  V  G  S  H  L  V  D  K  L  I  K  R  G  D  D  V  I  V  I  D  N  F  F  T  G  R  K  E  N  V  K  H  H  F  G  N  P  R  F  E  L  I  R  H  D  V  V  E  P  I  L  L  E  V  D  Q  I  Y  H  L  A  C  P  A  S  P  V  H  Y  K  Y  N  P  V  K  T  I  :  K  T  N  V  M  G  T  L  N  M  L  G  L  A  K  R  I  G  A  K  F  L  L  T  S  T  S  E  V  Y  G  D  P  L  E  H  P  Q  K  E  T  Y  W  G  H  V  N  P  I   : G  V  R  S  C  Y  D  E  G  K  R  T  A  E  T  L  T  M  D  Y  H  R  G  A  N  V  E  :  V  R  I  A  R  I  F  N  T  Y  G  P  R  M  C  L  D  D  G  R  V  V  S  N  F  V  A  Q  :  A  I  R  K  Q  P  M  T  V  Y  G  D  G  K  Q  T  R  S  F  Q  F  V  S  D  L  :  V  D  G  L  V  A  L  M  D  G  E  H  I  G  P  F  N  L  G  N  P  G  E  F  T  M  L  E  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90160" stop="90798"/>
                    <exon start="91226" stop="91373"/>
                    <exon start="91478" stop="91557"/>
                    <exon start="92647" stop="92730"/>
                    <exon start="92813" stop="92887"/>
                    <exon start="94230" stop="94319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAKKAMKLYKQSSRRDEDLPNSQPYSPKTLKYPRGSLPRSINYLLKEQRLLFILVGILIGSTFFIIQPSLSHLSTSSEPHSSIPRSYNALNHESLSKLASYNDKDVSFRVNGVTGRVPVGVGRKRMRIVVTGGAGFVGSHLVDKLIKRGDDVIVIDNFFTGRKENVKHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGAKFLLTSTSEVYGDPLEHPQKETYWGHVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRKQPMTVYGDGKQTRSFQFVSDLVDGLVALMDGEHIGPFNLGNPGEFTMLELA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 156 chains have been computed
$ 
$ memory statistics:
$ 237144 bytes spliced alignments in total
$ 53 spliced alignments have been stored
$ 4474 bytes was the average size of a spliced alignment
$ 17624 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1762 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 191 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:24:21
-->
