<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-23 17:40:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6497-2" ref_strand="+" ref_description="SGN-M6497-2 C2_At1g04530-2 [cosii_markers]">
      <seq>gaggagaagatccctgtaaccctttgtttttgaggaattatgctcaacttttgcagttgcttagaaatgctttatttataagccgagggtctagcggaaacaacctctctatctctatgagataaaggaaagtctaagggagatcttcctggagctgaacactattactttcaagctacactagctgatccaaaagatggagataccttgtcacagtatgctaagttagtatgggagctgcaccaagataaagatagagcatcagattactttgaacgtgcagtacgtactgctcctgagaacagccatgttcttggagcatatgctagtttcctctgggacattactgacgatgaaagtgaggatgaaatgaacacacagagtgataagactaagattgaggaaagtggggaagctactgtatcccggaacttagattacgaagaagctgacagacctgttagccctcccttacatcttgcagcaggattaggaattgggttaatctagttggtggcagctctcctgttgattatactgcagctgtatctgatatggacggaaatgccgaggaggagtacatgagaatgatcaaagaatatcctcatcactccgtgcttttaagaaactatgctcagtttcttagtcagtctaagggagacctactaggtgctgaagaatattactcacacgcaatactagctgatcctactgatggagaaactatttcacagtatgccatgttgatatggcaacttcatcaggataaagataaagcctcaacctactttaagagggcagtacaagcttctccacaagacagcgacgtgcttgctgcatatgctaggtttctctggcaaacagaggaagatgaagacggagaagaagatgaaacgttaggtgatcacaatggagcgccacttctgcaaggagtcgcctaaagcctgatgtcaaatgaatttcacaatccagattctaattcatattttagtttctcaagcttttcgcattatctaaagacttggagatttctcttgttgtggaggatcaactattctgggaaaatttttagatggtaagtgttgtttaatgagcaataaaatgtgcacaataatgttaaattgactttgtacaatgttatttttgggaataatgatagcagttgaaagagttgaatgaaaaattaaatagtgactctgcattgtagtaatatactgttttgtacctctatttgtatacaacattcacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="265" stop="4685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="561" g_stop="616" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="712" g_stop="787" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="132" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149">
            <donor d_prob="0.440" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1937" g_stop="2109" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="305" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2493" g_stop="2583" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="396" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2584" i_stop="2662" i_length="79">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2663" g_stop="2917" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="650" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3405" g_stop="3577" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="823" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3952" g_stop="4385" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="1257" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-M6497-2" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1258</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6497-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="561" e_stop="616"/>
          <exon e_start="712" e_stop="787"/>
          <exon e_start="1937" e_stop="2109"/>
          <exon e_start="2493" e_stop="2583"/>
          <exon e_start="2663" e_stop="2917"/>
          <exon e_start="3405" e_stop="3577"/>
          <exon e_start="3952" e_stop="4385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAGGTCAGTCTTTATGTCTTGTTCCTTTTGAGAAACCATTTTTCTCTTTCCATTTCACATTATTTTATTGTGGTTACTGCGTTTATTCCCTTTTTCAGTTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAGGTCTGCGTACACTTTATCCTTCCCGGACCCCATTTGTGTGATTACAATGGACATGTTGTTGTTGTTGTTGTCGTCATTGTGTTTTTTTAGTGTTTGATGGCATGAGTTGAACTTAAACCGGAGAAAAATGGTCAGTGAGGAGTCATATAGCGGACTGGAATTTGGGATTGAGGTCAAGTATTGTAGGATTGCGGAAGTCCGTTTCTTGTGAGTTCTATAACTGCAAACTTAGAATTCTTAACATGGTCAGTGATTATCCATATAGCCGACCATTATTTGTTTGGGATTGAGATCATAGTTGTTGTTGTATACATGTTTGATCCTCATTGTAAATCCTTTAGAGATTCTAGGATTGTGAAAGTAAGGTTCTTGTGAGTTCTATAACTGCAAAGTTAGAATCTTAAACATGGCTAGTGATGATTCATATAGCCGACTGTAACTTGTTTGGTATTGAGATCATAGTTATTGTTGCTGTTGTATAATTGTTTGATTCTCTTTGTAAGTCCTTTACATATTCTAGGATTGTGAAAAGTAAGTTCTTGTGAGTTCTATAGCTGCACAGTTGGAATTATAATTGTGGAACTAAAGTCACCTCTGTGAATTTGATCTCATCTTTGGCTTCTTGCTCTTGCTGTAAGTTGCCCCAATAAAATAAACTAGTTGGATGAGTATGCCATGATAGTAATAGTAGATTGAATAAATTTAAACAAATTAGAATCCAATTTTGAACCTTCTATAATCAGTTCACTCATTTCGAAGCTTAAATCTTCTAATACTATGGATTAGCAGTTGCACAACCAGGTCACGAGAAGGGAGTAAGTGAGAAGACTCTTCTTTCATGATGTTCTAGGATGCCAATGTACGTCGACAATAAATTTATTAGTGGTTTGAAATGTAAAAAGCATACAACAGTAACTGATTCATGTGCTATTCTGTTCTTCCTAATAGATACTTCGGAAATCTGGTCATTATAGCTGTTGTGATTCTTTGACTGGAAAAGCACATAACATGATATGCTTAGATGCTATGTGGTTTTAGATATATCTCCATCTTTATTTTTGTCTTTTTCTTTAGATCTAGTCCAATCTTGATTATGTTTCTCTGGCGACAACTTTTTCTTCATGTAACCCACTGTATTCTTGTCTCTAGTCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAGGTTATACTTGACTTGCACCTTTCGTTGAAATGAGAGAATGAGTTATTGGTTCAATTAGATATTGATTTACAAAACCTGGGCATGTGAAGAATCTATTAGTCACCTCTCCTCATCTTCTCCTTTTTATTAGTATTTGTGTAGCATCTTAGTCATAAATTTTACCTATTGCAGCTTCTTTGCTTTGTTCATCTTGCTATTTTGTTGTTTTTATTTTTTCTTTCAATCCTGCTTTGATTAAAATTCTTTTGAGCTGAGGGTCTATGGAAAAAGCCTTTCTATCCCACAAAGGTGGGGGTAAGGTTTAGGTACATGTAACCCTGCCCAAACCCCACTTGTTGAATTACACTTATGTCATTGTTGTTGAAATCTATTATTGTTTCCAGCCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAGGTTTCTTCCGTTCGTTCTGCCTCAACGAGTATATATGTGTGAACTCTGTTTGACTTTAAATTTCTTCTGGATGTGTCAGATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAGGTGAATGTTTCATATTTTCTGCACTAAATGTTCTTTATTAACATGTATATCATCCATCATATGCTTACGACAATGCCCATTTGATATCTATATATTATCTTGATTTAGAAATGTGTGATTGTCCGAAGCTGCAAACATCGACACAGTCGTTCTCCTTAAGTGTCTGAGATGTCTCAAGCTCCCTCCCGAATATGCTTTTTAAGATTTCAGCCCTTTCTTTAAATTGTACAAAAGAACAGCTGGTCATCCTAATTCAGTAGGATTGGGATGGAGAAATATAAATGCATGCTCAAATATGAAATTTTCTTGAACATTATGTCATTCCTTTCACCAGATCTTTACAATAGCTACAACAGTTTATCGTTTACTTGTCAGAACGTAACCAAAAACAAGAAAAGCTATCTCCCTTCATTGGTGCTTACATATTAATAATATCGACTGGTCTTGCTAATTCTGACATTTCTCATGTTTGCTGTTGGACTGGCAGTCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAGGTAATATTGAATTGAAGCCCCTCGGTTTTTTATTCGCAACACGTTGAATTAAAAGTATAGCGGGAACTTAATAACCTAAGCACTTTTCCTACTTGGTCAGTTATTAAGATGATTTTACAGATTTATGTGATGTGAACGAAATCTGCTACTGTTTGATAACATTGAAAAGGTTAATGACAAAAGATACTTATACAAGGTTGATGGTAACTTGGTATTATGTGAATGTATTCGTGGAAAAATATAAGAATTTTGGTGATCTTTGGTGTGATATCAAAGCATTTGTACGTTGCGTTTATAATTGCTACTTGCACATCAAGTTCATTTTTCTCATTGTCTGAGACACTGAGTTACTAGCTTGCTTTTTTGCTTTTCAGCGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAATGACAA</genome_strand>
        <mrna_strand>GAGGAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG...............................................................................................TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAG...............................................................................ATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATT-GGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M786-2" ref_strand="+" ref_description="SGN-M786-2 SSR113-2 [est_by_read]">
      <seq>ttcatttttctcattttcccctaaatttttttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagacatttttcagctaagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35415" stop="33345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35115" g_stop="34754" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="524" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33645" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="566" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-M786-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M786-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35115" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTG</genome_strand>
        <mrna_strand>TTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M884-2" ref_strand="+" ref_description="SGN-M884-2 SSR211-2 [est_by_read]">
      <seq>ttcatttttctcattttcccctaaatttttttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagacatttttcagctaagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35415" stop="33345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35115" g_stop="34754" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="524" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33645" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="566" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-M884-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M884-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35115" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTG</genome_strand>
        <mrna_strand>TTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M786" ref_strand="+" ref_description="SGN-M786 SSR113 [est_by_read_no_qc_info]">
      <seq>ctcattttcccctaaatttttttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35406" stop="33363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35106" g_stop="34754" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="515" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33663" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="539" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-M786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35106" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACA</genome_strand>
        <mrna_strand>CTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M884" ref_strand="+" ref_description="SGN-M884 SSR211 [est_by_read_no_qc_info]">
      <seq>ctcattttcccctaaatttttttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35406" stop="33363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35106" g_stop="34754" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="515" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33663" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="539" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-M884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35106" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACA</genome_strand>
        <mrna_strand>CTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="561" PGL_stop="4385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="561" e_stop="616"/>
            <exon e_start="712" e_stop="787"/>
            <exon e_start="1937" e_stop="2109"/>
            <exon e_start="2493" e_stop="2583"/>
            <exon e_start="2663" e_stop="2917"/>
            <exon e_start="3405" e_stop="3577"/>
            <exon e_start="3952" e_stop="4385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.965" e_score="0.929"/>
          <exon-intron don_prob="0.440" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="0.996"/>
          <exon-intron don_prob="0.931" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="561" e_stop="616" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.965">
            <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="712" e_stop="787" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.440" acc_prob="0.822">
            <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1937" e_stop="2109" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2493" e_stop="2583" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.846" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2584" i_stop="2662" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="2663" e_stop="2917" e_length="255"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3405" e_stop="3577" e_length="173"/>
          </exon>
          <intron i_serial="6" don_prob="0.931" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="3952" e_stop="4385" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="561" stop="616"/>
              <exon start="712" stop="787"/>
              <exon start="1937" stop="2109"/>
              <exon start="2493" stop="2583"/>
              <exon start="2663" stop="2917"/>
              <exon start="3405" stop="3577"/>
              <exon start="3952" stop="4385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6497-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG : TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG : TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG : CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAG : ATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG : TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG : CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAATGACAA</gDNA_template>
            <first_frame> L  K  K  I  P  V  T  L  C  F  *  G  I  M  L  N  F  C  S :   C  L  E  M  L  Y  L  *  A  E  G  L  A  E  T  T  S  L  S  L  *  D  K  G  K  :  S  K  G  D  L  P  G  A  E  H  Y  Y  F  Q  A  T  L  A  D  P  K  D  G  D  T  L  S  Q  Y  A  K  L  V  W  E  L  H  Q  D  K  D  R  A  S  D  Y  F  E  R  A  V  R  T  A  P  E  N  S :   H  V  L  G  A  Y  A  S  F  L  W  D  I  T  D  D  E  S  E  D  E  M  N  T  Q  S  D  K  T  K  :  I  E  E  S  G  E  A  T  V  S  R  N  L  D  Y  E  E  A  D  R  P  V  S  P  P  L  H  L  A  A  G  L  G  I  G  V  N  L  V  G  G  S  S  P  V  D  Y  T  A  A  V  S  D  M  D  G  N  A  E  E  E  Y  M  R  M  I  K  E  Y  P  H  H  S  V  L  L  R  N  Y  A  Q  F  L  S  Q  :  S  K  G  D  L  L  G  A  E  E  Y  Y  S  H  A  I  L  A  D  P  T  D  G  E  T  I  S  Q  Y  A  M  L  I  W  Q  L  H  Q  D  K  D  K  A  S  T  Y  F  K  R  A  V  Q  A  S  P  Q  D  S :   D  V  L  A  A  Y  A  R  F  L  W  Q  T  E  E  D  E  D  G  E  E  D  E  T  L  G  D  H  N  G  A  P  L  L  Q  G  V  A  *  S  L  M  S  N  E  F  H  N  P  D  S  N  S  Y  F  S  F  S  S  F  S  H  Y  L  K  T  W  R  F  L  L  L  W  R  I  N  Y  S  G  K  I  F  R  W  *  V  L  F  N  E  Q  *  N  V  H  N  N  V  K  L  T  L  Y  N  V  I  F  G  N  N  D  S  S  *  K  S  *  M  K  N  *  I  V  T  L  H  C  S  N  I  L  F  C  T  S  I  C  I  Q  H  S  Q  M  T  </first_frame>
            <second_frame>  *  R  R  S  L  *  P  F  V  F  E  E  L  C  S  T  F  A   : V  A  *  K  C  F  I  Y  K  P  R  V  *  R  K  Q  P  L  Y  L  Y  E  I  K  E  S :   L  R  E  I  F  L  E  L  N  T  I  T  F  K  L  H  *  L  I  Q  K  M  E  I  P  C  H  S  M  L  S  *  Y  G  S  C  T  K  I  K  I  E  H  Q  I  T  L  N  V  Q  Y  V  L  L  L  R  T   : A  M  F  L  E  H  M  L  V  S  S  G  T  L  L  T  M  K  V  R  M  K  *  T  H  R  V  I  R  L  R :   L  R  K  V  G  K  L  L  Y  P  G  T  *  I  T  K  K  L  T  D  L  L  A  L  P  Y  I  L  Q  Q  D  *  E  L  G  L  I  *  L  V  A  A  L  L  L  I  I  L  Q  L  Y  L  I  W  T  E  M  P  R  R  S  T  *  E  *  S  K  N  I  L  I  T  P  C  F  *  E  T  M  L  S  F  L  V  S :   L  R  E  T  Y  *  V  L  K  N  I  T  H  T  Q  Y  *  L  I  L  L  M  E  K  L  F  H  S  M  P  C  *  Y  G  N  F  I  R  I  K  I  K  P  Q  P  T  L  R  G  Q  Y  K  L  L  H  K  T   : A  T  C  L  L  H  M  L  G  F  S  G  K  Q  R  K  M  K  T  E  K  K  M  K  R  *  V  I  T  M  E  R  H  F  C  K  E  S  P  K  A  *  C  Q  M  N  F  T  I  Q  I  L  I  H  I  L  V  S  Q  A  F  R  I  I  *  R  L  G  D  F  S  C  C  G  G  S  T  I  L  G  K  F  L  D  G  K  C  C  L  M  S  N  K  M  C  T  I  M  L  N  *  L  C  T  M  L  F  L  G  I  M  I  A  V  E  R  V  E  *  K  I  K  *  *  L  C  I  V  V  I  Y  C  F  V  P  L  F  V  Y  N  I  H  K  *  Q </second_frame>
            <third_frame>   K  E  D  P  C  N  P  L  F  L  R  N  Y  A  Q  L  L  Q  :  L  L  R  N  A  L  F  I  S  R  G  S  S  G  N  N  L  S  I  S  M  R  *  R  K   : V  *  G  R  S  S  W  S  *  T  L  L  L  S  S  Y  T  S  *  S  K  R  W  R  Y  L  V  T  V  C  *  V  S  M  G  A  A  P  R  *  R  *  S  I  R  L  L  *  T  C  S  T  Y  C  S  *  E  Q  :  P  C  S  W  S  I  C  *  F  P  L  G  H  Y  *  R  *  K  *  G  *  N  E  H  T  E  *  *  D  *   : D  *  G  K  W  G  S  Y  C  I  P  E  L  R  L  R  R  S  *  Q  T  C  *  P  S  L  T  S  C  S  R  I  R  N  W  G  *  S  S  W  W  Q  L  S  C  *  L  Y  C  S  C  I  *  Y  G  R  K  C  R  G  G  V  H  E  N  D  Q  R  I  S  S  S  L  R  A  F  K  K  L  C  S  V  S  *  S   : V  *  G  R  P  T  R  C  *  R  I  L  L  T  R  N  T  S  *  S  Y  *  W  R  N  Y  F  T  V  C  H  V  D  M  A  T  S  S  G  *  R  *  S  L  N  L  L  *  E  G  S  T  S  F  S  T  R  Q  :  R  R  A  C  C  I  C  *  V  S  L  A  N  R  G  R  *  R  R  R  R  R  *  N  V  R  *  S  Q  W  S  A  T  S  A  R  S  R  L  K  P  D  V  K  *  I  S  Q  S  R  F  *  F  I  F  *  F  L  K  L  F  A  L  S  K  D  L  E  I  S  L  V  V  E  D  Q  L  F  W  E  N  F  *  M  V  S  V  V  *  *  A  I  K  C  A  Q  *  C  *  I  D  F  V  Q  C  Y  F  W  E  *  *  *  Q  L  K  E  L  N  E  K  L  N  S  D  S  A  L  *  *  Y  T  V  L  Y  L  Y  L  Y  T  T  F  T  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="776" stop="787"/>
                    <exon start="1937" stop="2109"/>
                    <exon start="2493" stop="2583"/>
                    <exon start="2663" stop="2917"/>
                    <exon start="3405" stop="3577"/>
                    <exon start="3952" stop="4069"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKGKSKGDLPGAEHYYFQATLADPKDGDTLSQYAKLVWELHQDKDRASDYFERAVRTAPENSHVLGAYASFLWDITDDESEDEMNTQSDKTKIEESGEATVSRNLDYEEADRPVSPPLHLAAGLGIGVNLVGGSSPVDYTAAVSDMDGNAEEEYMRMIKEYPHHSVLLRNYAQFLSQSKGDLLGAEEYYSHAILADPTDGETISQYAMLIWQLHQDKDKASTYFKRAVQASPQDSDVLAAYARFLWQTEEDEDGEEDETLGDHNGAPLLQGVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="35115" PGL_stop="33645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35115" e_stop="34754"/>
            <exon e_start="33945" e_stop="33784"/>
            <exon e_start="33686" e_stop="33645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.862" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35115" e_stop="34754" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33945" e_stop="33784" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.770" acc_prob="0.862">
            <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33686" e_stop="33645" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35115" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M786-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35115" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M884-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35106" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35106" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG : ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG : GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTG</gDNA_template>
            <first_frame> F  I  F  L  I  F  P  *  I  F  F  S  S  H  F  A  L  L  Q  D  L  Y  I  L  H  P  S  I  F  P  G  V  N  S  T  K  F  E  G  I  F  G  *  F  Y  R  F  F  N  I  S  P  E  K  F  H  W  K  *  R  E  I  L  G  H  E  V  F  V  C  G  D  R  I  M  R  G  S  L  W  P  E  N  S  S  S  D  S  S  T  S  N  P  I  H  V  P  P  P  P  P  P  P  G  W  N  S  P  A  L  P  I  E  Q  N  P  N  C  K  N  R :   C  G  N  V  F  Q  L  L  T  K  R  E  V  S  P  R  A  K  R  S  S  K  K  L  W  D  E  N  S  K  Y  C  A  H  S  Y  E  K  L  K  S  Q  V  A  R  D  P  R  R  G  L  I  S  W :   V  E  A  E  S  L  R  H  F  S  A  K  Y   </first_frame>
            <second_frame>  S  F  F  S  F  S  P  K  F  F  F  L  P  I  L  P  F  Y  K  I  S  I  S  S  I  P  L  Y  F  P  V  *  I  P  P  N  L  R  A  F  S  D  N  F  I  D  F  L  I  F  R  R  K  S  S  I  G  N  D  G  K  Y  W  G  M  R  Y  S  F  V  G  I  E  L  *  G  D  L  F  G  R  R  I  Q  V  V  I  H  L  R  Q  I  R  F  M  Y  R  R  R  R  R  R  R  D  G  I  R  L  L  F  R  L  S  K  T  L  I  A  K  T   : D  V  V  M  S  F  S  Y  *  R  R  G  R  Y  L  L  E  L  N  V  V  L  R  S  Y  G  M  R  I  L  N  I  V  L  I  P  M  R  S  *  K  A  K  *  Q  E  T  R  D  G  V  L  Y  H   : G  *  R  Q  N  H  *  D  I  F  Q  L  S  I  </second_frame>
            <third_frame>   H  F  S  H  F  P  L  N  F  F  F  F  P  F  C  P  S  T  R  S  L  Y  P  P  S  L  Y  I  S  R  C  K  F  H  Q  I  *  G  H  F  R  I  I  L  S  I  F  *  Y  F  A  G  K  V  P  L  E  M  T  G  N  I  G  A  *  G  I  R  L  W  G  *  N  Y  E  G  I  S  L  A  G  E  F  K  *  *  F  I  Y  V  K  S  D  S  C  T  A  A  A  A  A  A  G  M  E  F  A  C  S  S  D  *  A  K  P  *  L  Q  K  Q  :  M  W  *  C  L  S  A  T  N  E  E  G  G  I  S  S  S  *  T  *  F  *  E  V  M  G  *  E  F  *  I  L  C  S  F  L  *  E  V  K  K  P  S  S  K  R  P  E  T  G  S  Y  I  M  :  G  R  G  R  I  I  E  T  F  F  S  *  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34938" stop="34754"/>
                    <exon start="33945" stop="33784"/>
                    <exon start="33686" stop="33647"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REILGHEVFVCGDRIMRGSLWPENSSSDSSTSNPIHVPPPPPPPGWNSPALPIEQNPNCKNRCGNVFQLLTKREVSPRAKRSSKKLWDENSKYCAHSYEKLKSQVARDPRRGLISWVEAESLRHFSAKY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 11400 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 6960 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3480 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-23 17:40:59
-->
