<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-23 17:36:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541324" ref_strand="+" ref_description="SGN-E541324 [TUS-62-A22]">
      <seq>aaaaaagaacttggataatactcctacttgtaaaatcccatagtcttcacataaaatcatttagaagagcttaatttgatgggaatttaaaagggttgtcttgaaatacttcaattttttctaatcttggaaaactgtattaagctcaaaggtgacatttttatcttgtcataagcaagaaagttcaaaatgttgcctaaagaaccatcattttgtatatataatactgaagatggggttgatgagatgaaggaaaatcaagatttggttaggtctgtgacaataggggatattgtatcagatataggtagtagtgatttcagttttgggaaaaaggggatggggttgattgaggaagatgagaatgaagatgaggaaaaaagggttttttatgaggttaatgagctaggatttgaagagagtgaacaagtaattagttcaaagtatcatggtggggttgagtttgaacctttagattttcatggaaatggacatgttgacgaatattatcaaagggttcttaaagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="1" stop="871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41" g_stop="571" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E541324" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41" e_stop="571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTGAGGAATATTATAAAAGGGTTCTTAAAGAAGAT</genome_strand>
        <mrna_strand>AAAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTCATGGAAATGGACATGTTGACGAATATTATCAAAGGGTTCTTAAAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296972" ref_strand="+" ref_description="SGN-E296972 [cLET-26-D22]">
      <seq>aaaaagaacttggataatactcctacttgtaaaatcccatagtcttcacataaaatcatttagaagagcttaatttgatgggaatttaaaagggttgtcttgaaatacttcaattttttctaatcttggaaaactgtattaagctcaaaggtgacatttttatcttgtcataagcaagaaagttcaaaatgttgcctaaagaaccatcattttgtatatataatactgaagatggggttgatgagatgaaggaaaatcaagatttggttaggtctgtgacaataggggatattgtatcagatataggtagtagtgatttcagttttgggaaaaaggggatggggttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="1" stop="691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42" g_stop="391" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E296972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42" e_stop="391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATT</genome_strand>
        <mrna_strand>AAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414204" ref_strand="+" ref_description="SGN-E414204 [STM-19-K11]">
      <seq>caactttgagttttttcttcttgaaagtcttcacatgtccattttttccttaataaaatcccatagttttcacagaaaatcatttagaagagcttaatttgatgggaatttaaaagggttatcttgaaatacttcaatttcttataatcttgaaaaactgtataagctcaaaggtgacatttttatcttgtcataagcaagaaagttcaaaatgttgcctaaagaaccatcattttgtatatataatacagaggatggggttgatgaattaaaggaaaatcaagatttggttaggtctgtgacaataggggatattatatcagatataggtagtagtgatttcagttttgggaaaaagggaatggggttgattgaggaagatgagaatgaagatggggaaaaaagggttttttatgaggttagtgagctaggatttgaagagagtgaaccagtaattagttcanagtaccttggtggggttgagtctgaacctttagattttgatggaaatggagatgttgaggaatattataaaagggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="1" stop="860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71" g_stop="560" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="542" r_length="489" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E414204" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71" e_stop="560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTGAGGAATATTATAAAAGGGTTC</genome_strand>
        <mrna_strand>TAAAATCCCATAGTTTTCACAGAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTATCTTGAAATACTTCAATTTCTTATAATCTTGAAAAACTGTA-TAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACAGAGGATGGGGTTGATGAATTAAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTATATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGAATGGGGTTGATTGAGGAAGATGAGAATGAAGATGGGGAAAAAAGGGTTTTTTATGAGGTTAGTGAGCTAGGATTTGAAGAGAGTGAACCAGTAATTAGTTCANAGTACCTTGGTGGGGTTGAGTCTGAACCTTTAGATTTTGATGGAAATGGAGATGTTGAGGAATATTATAAAAGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282105" ref_strand="+" ref_description="SGN-E282105 [cLES-4-G5]">
      <seq>tgatgggaatttaaaagggttgtcttgaaatacttcaattttttctaatcttggaaaactgtattaagctcaaaggtgacatttttatcttgtcataagcaagaaagttcaaaatgttgcctaaagaaccatcattttgtatatataatactgaagatggggttgatgagatgaaggaaaatcaagatttggttaggtctgtgacaataggggatattgtatcagatataggtagtagtgatttcagttttgggaaaaaggggatggggttgattgaggaagatgagaatgaagatgaggaaaaaagggttttttatgaggttaatgagctaggatttgaagagagtgaacaagtaattagttcaaagtatcatggtggggttgagtttgaacctttagattttgatggaaatggagatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="1" stop="839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117" g_stop="539" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E282105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117" e_stop="539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTG</genome_strand>
        <mrna_strand>TGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304867" ref_strand="+" ref_description="SGN-E304867 [cLEX-10-K11]">
      <seq>gaggagaagatccctgtaaccctttgtttttgaggaattatgctcaacttttgcagttgcttagaaatgctttatttataagccgagggtctagcggaaacaacctctctatctctatgagataaaggaaagtctaagggagatcttcctggagctgaacactattactttcaagctacactagctgatccaaaagatggagataccttgtcacagtatgctaagttagtatgggagctgcaccaagataaagatagagcatcagattactttgaacgtgcagtacgtactgctcctgagaacagccatgttcttggagcatatgctagtttcctctgggacattactgacgatgaaagtgaggatgaaatgaacacacagagtgataagactaagattgaggaaagtggggaagctactgtatcccggaacttagattacgaagaagctgacagacctgttagccctcccttacatcttgcagcaggattaggaattggggttaatctagttggtggcagctctcctgttgattatactgcagctgtatctgatatggacggaaatgccgaggaggagtacatgagaatgatcaaagaatatcctcatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="265" stop="3179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="561" g_stop="616" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="712" g_stop="787" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="132" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149">
            <donor d_prob="0.440" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1937" g_stop="2109" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="305" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2493" g_stop="2583" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="396" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2584" i_stop="2662" i_length="79">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2663" g_stop="2879" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="613" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E304867" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="561" e_stop="616"/>
          <exon e_start="712" e_stop="787"/>
          <exon e_start="1937" e_stop="2109"/>
          <exon e_start="2493" e_stop="2583"/>
          <exon e_start="2663" e_stop="2879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAGGTCAGTCTTTATGTCTTGTTCCTTTTGAGAAACCATTTTTCTCTTTCCATTTCACATTATTTTATTGTGGTTACTGCGTTTATTCCCTTTTTCAGTTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAGGTCTGCGTACACTTTATCCTTCCCGGACCCCATTTGTGTGATTACAATGGACATGTTGTTGTTGTTGTTGTCGTCATTGTGTTTTTTTAGTGTTTGATGGCATGAGTTGAACTTAAACCGGAGAAAAATGGTCAGTGAGGAGTCATATAGCGGACTGGAATTTGGGATTGAGGTCAAGTATTGTAGGATTGCGGAAGTCCGTTTCTTGTGAGTTCTATAACTGCAAACTTAGAATTCTTAACATGGTCAGTGATTATCCATATAGCCGACCATTATTTGTTTGGGATTGAGATCATAGTTGTTGTTGTATACATGTTTGATCCTCATTGTAAATCCTTTAGAGATTCTAGGATTGTGAAAGTAAGGTTCTTGTGAGTTCTATAACTGCAAAGTTAGAATCTTAAACATGGCTAGTGATGATTCATATAGCCGACTGTAACTTGTTTGGTATTGAGATCATAGTTATTGTTGCTGTTGTATAATTGTTTGATTCTCTTTGTAAGTCCTTTACATATTCTAGGATTGTGAAAAGTAAGTTCTTGTGAGTTCTATAGCTGCACAGTTGGAATTATAATTGTGGAACTAAAGTCACCTCTGTGAATTTGATCTCATCTTTGGCTTCTTGCTCTTGCTGTAAGTTGCCCCAATAAAATAAACTAGTTGGATGAGTATGCCATGATAGTAATAGTAGATTGAATAAATTTAAACAAATTAGAATCCAATTTTGAACCTTCTATAATCAGTTCACTCATTTCGAAGCTTAAATCTTCTAATACTATGGATTAGCAGTTGCACAACCAGGTCACGAGAAGGGAGTAAGTGAGAAGACTCTTCTTTCATGATGTTCTAGGATGCCAATGTACGTCGACAATAAATTTATTAGTGGTTTGAAATGTAAAAAGCATACAACAGTAACTGATTCATGTGCTATTCTGTTCTTCCTAATAGATACTTCGGAAATCTGGTCATTATAGCTGTTGTGATTCTTTGACTGGAAAAGCACATAACATGATATGCTTAGATGCTATGTGGTTTTAGATATATCTCCATCTTTATTTTTGTCTTTTTCTTTAGATCTAGTCCAATCTTGATTATGTTTCTCTGGCGACAACTTTTTCTTCATGTAACCCACTGTATTCTTGTCTCTAGTCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAGGTTATACTTGACTTGCACCTTTCGTTGAAATGAGAGAATGAGTTATTGGTTCAATTAGATATTGATTTACAAAACCTGGGCATGTGAAGAATCTATTAGTCACCTCTCCTCATCTTCTCCTTTTTATTAGTATTTGTGTAGCATCTTAGTCATAAATTTTACCTATTGCAGCTTCTTTGCTTTGTTCATCTTGCTATTTTGTTGTTTTTATTTTTTCTTTCAATCCTGCTTTGATTAAAATTCTTTTGAGCTGAGGGTCTATGGAAAAAGCCTTTCTATCCCACAAAGGTGGGGGTAAGGTTTAGGTACATGTAACCCTGCCCAAACCCCACTTGTTGAATTACACTTATGTCATTGTTGTTGAAATCTATTATTGTTTCCAGCCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAGGTTTCTTCCGTTCGTTCTGCCTCAACGAGTATATATGTGTGAACTCTGTTTGACTTTAAATTTCTTCTGGATGTGTCAGATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACT</genome_strand>
        <mrna_strand>GAGGAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG...............................................................................................TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAG...............................................................................ATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548893" ref_strand="+" ref_description="SGN-E548893 [TUS-65-G7]">
      <seq>agaagatccctgtaaccctttgtttttgaggaattatgctcaacttttgcagttgcttagaaatgctttatttataagccgagggtctagcggaaacaacctctctatctctatgagataaaggaaagtctaagggagatcttcctggagctgaacactattactttcaagctacactagctgatccaaaagatggagataccttgtcacagtatgctaagttagtatgggagctgcaccaagataaagatagagcatcagattactttgaacgtgcagtacgtactgctcctgagaacagccatgttcttggagcatatgctagtttcctctgggacattactgacgatgaaagtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="265" stop="2852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="565" g_stop="616" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="712" g_stop="787" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="128" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149">
            <donor d_prob="0.440" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1937" g_stop="2109" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="301" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2493" g_stop="2552" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="361" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E548893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="565" e_stop="616"/>
          <exon e_start="712" e_stop="787"/>
          <exon e_start="1937" e_stop="2109"/>
          <exon e_start="2493" e_stop="2552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAGGTCAGTCTTTATGTCTTGTTCCTTTTGAGAAACCATTTTTCTCTTTCCATTTCACATTATTTTATTGTGGTTACTGCGTTTATTCCCTTTTTCAGTTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAGGTCTGCGTACACTTTATCCTTCCCGGACCCCATTTGTGTGATTACAATGGACATGTTGTTGTTGTTGTTGTCGTCATTGTGTTTTTTTAGTGTTTGATGGCATGAGTTGAACTTAAACCGGAGAAAAATGGTCAGTGAGGAGTCATATAGCGGACTGGAATTTGGGATTGAGGTCAAGTATTGTAGGATTGCGGAAGTCCGTTTCTTGTGAGTTCTATAACTGCAAACTTAGAATTCTTAACATGGTCAGTGATTATCCATATAGCCGACCATTATTTGTTTGGGATTGAGATCATAGTTGTTGTTGTATACATGTTTGATCCTCATTGTAAATCCTTTAGAGATTCTAGGATTGTGAAAGTAAGGTTCTTGTGAGTTCTATAACTGCAAAGTTAGAATCTTAAACATGGCTAGTGATGATTCATATAGCCGACTGTAACTTGTTTGGTATTGAGATCATAGTTATTGTTGCTGTTGTATAATTGTTTGATTCTCTTTGTAAGTCCTTTACATATTCTAGGATTGTGAAAAGTAAGTTCTTGTGAGTTCTATAGCTGCACAGTTGGAATTATAATTGTGGAACTAAAGTCACCTCTGTGAATTTGATCTCATCTTTGGCTTCTTGCTCTTGCTGTAAGTTGCCCCAATAAAATAAACTAGTTGGATGAGTATGCCATGATAGTAATAGTAGATTGAATAAATTTAAACAAATTAGAATCCAATTTTGAACCTTCTATAATCAGTTCACTCATTTCGAAGCTTAAATCTTCTAATACTATGGATTAGCAGTTGCACAACCAGGTCACGAGAAGGGAGTAAGTGAGAAGACTCTTCTTTCATGATGTTCTAGGATGCCAATGTACGTCGACAATAAATTTATTAGTGGTTTGAAATGTAAAAAGCATACAACAGTAACTGATTCATGTGCTATTCTGTTCTTCCTAATAGATACTTCGGAAATCTGGTCATTATAGCTGTTGTGATTCTTTGACTGGAAAAGCACATAACATGATATGCTTAGATGCTATGTGGTTTTAGATATATCTCCATCTTTATTTTTGTCTTTTTCTTTAGATCTAGTCCAATCTTGATTATGTTTCTCTGGCGACAACTTTTTCTTCATGTAACCCACTGTATTCTTGTCTCTAGTCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAGGTTATACTTGACTTGCACCTTTCGTTGAAATGAGAGAATGAGTTATTGGTTCAATTAGATATTGATTTACAAAACCTGGGCATGTGAAGAATCTATTAGTCACCTCTCCTCATCTTCTCCTTTTTATTAGTATTTGTGTAGCATCTTAGTCATAAATTTTACCTATTGCAGCTTCTTTGCTTTGTTCATCTTGCTATTTTGTTGTTTTTATTTTTTCTTTCAATCCTGCTTTGATTAAAATTCTTTTGAGCTGAGGGTCTATGGAAAAAGCCTTTCTATCCCACAAAGGTGGGGGTAAGGTTTAGGTACATGTAACCCTGCCCAAACCCCACTTGTTGAATTACACTTATGTCATTGTTGTTGAAATCTATTATTGTTTCCAGCCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGA</genome_strand>
        <mrna_strand>AGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG...............................................................................................TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304980" ref_strand="+" ref_description="SGN-E304980 [cLEX-10-J12]">
      <seq>gaagatccctgtaaccctttgtttttgaggaattatgctcaacttttgcagttgcttagaaatgctttatttataagccgagggtctagcggaaacaacctctctatctctatgagataaaggaaagtctaagggagatcttcctggagctgaacactattactttcaagctacactagctgatccaaaagatggagataccttgtcacagtatgctaagttagtatgggagctgcaccaagataaagatagagcatcagattactttgaacgtgcagtacgtactgctcctgagaacagccatgttcttggagcatatgctagtttcctctgggacattactgacgatgaaagtgaggatgaaatgaacacacagagtgataagactaagattgaggaaagtggggaagctactgtatcccggaacttagattacgaagaagctgacagacctgttagccctcccttacatcttgcagcaggattaggaattggggttaatctagttggtggcagctctcctgttgattatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="266" stop="3106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="566" g_stop="616" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="712" g_stop="787" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="127" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149">
            <donor d_prob="0.440" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1937" g_stop="2109" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="300" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2493" g_stop="2583" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="391" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2584" i_stop="2662" i_length="79">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2663" g_stop="2806" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="535" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E304980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="566" e_stop="616"/>
          <exon e_start="712" e_stop="787"/>
          <exon e_start="1937" e_stop="2109"/>
          <exon e_start="2493" e_stop="2583"/>
          <exon e_start="2663" e_stop="2806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAGGTCAGTCTTTATGTCTTGTTCCTTTTGAGAAACCATTTTTCTCTTTCCATTTCACATTATTTTATTGTGGTTACTGCGTTTATTCCCTTTTTCAGTTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAGGTCTGCGTACACTTTATCCTTCCCGGACCCCATTTGTGTGATTACAATGGACATGTTGTTGTTGTTGTTGTCGTCATTGTGTTTTTTTAGTGTTTGATGGCATGAGTTGAACTTAAACCGGAGAAAAATGGTCAGTGAGGAGTCATATAGCGGACTGGAATTTGGGATTGAGGTCAAGTATTGTAGGATTGCGGAAGTCCGTTTCTTGTGAGTTCTATAACTGCAAACTTAGAATTCTTAACATGGTCAGTGATTATCCATATAGCCGACCATTATTTGTTTGGGATTGAGATCATAGTTGTTGTTGTATACATGTTTGATCCTCATTGTAAATCCTTTAGAGATTCTAGGATTGTGAAAGTAAGGTTCTTGTGAGTTCTATAACTGCAAAGTTAGAATCTTAAACATGGCTAGTGATGATTCATATAGCCGACTGTAACTTGTTTGGTATTGAGATCATAGTTATTGTTGCTGTTGTATAATTGTTTGATTCTCTTTGTAAGTCCTTTACATATTCTAGGATTGTGAAAAGTAAGTTCTTGTGAGTTCTATAGCTGCACAGTTGGAATTATAATTGTGGAACTAAAGTCACCTCTGTGAATTTGATCTCATCTTTGGCTTCTTGCTCTTGCTGTAAGTTGCCCCAATAAAATAAACTAGTTGGATGAGTATGCCATGATAGTAATAGTAGATTGAATAAATTTAAACAAATTAGAATCCAATTTTGAACCTTCTATAATCAGTTCACTCATTTCGAAGCTTAAATCTTCTAATACTATGGATTAGCAGTTGCACAACCAGGTCACGAGAAGGGAGTAAGTGAGAAGACTCTTCTTTCATGATGTTCTAGGATGCCAATGTACGTCGACAATAAATTTATTAGTGGTTTGAAATGTAAAAAGCATACAACAGTAACTGATTCATGTGCTATTCTGTTCTTCCTAATAGATACTTCGGAAATCTGGTCATTATAGCTGTTGTGATTCTTTGACTGGAAAAGCACATAACATGATATGCTTAGATGCTATGTGGTTTTAGATATATCTCCATCTTTATTTTTGTCTTTTTCTTTAGATCTAGTCCAATCTTGATTATGTTTCTCTGGCGACAACTTTTTCTTCATGTAACCCACTGTATTCTTGTCTCTAGTCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAGGTTATACTTGACTTGCACCTTTCGTTGAAATGAGAGAATGAGTTATTGGTTCAATTAGATATTGATTTACAAAACCTGGGCATGTGAAGAATCTATTAGTCACCTCTCCTCATCTTCTCCTTTTTATTAGTATTTGTGTAGCATCTTAGTCATAAATTTTACCTATTGCAGCTTCTTTGCTTTGTTCATCTTGCTATTTTGTTGTTTTTATTTTTTCTTTCAATCCTGCTTTGATTAAAATTCTTTTGAGCTGAGGGTCTATGGAAAAAGCCTTTCTATCCCACAAAGGTGGGGGTAAGGTTTAGGTACATGTAACCCTGCCCAAACCCCACTTGTTGAATTACACTTATGTCATTGTTGTTGAAATCTATTATTGTTTCCAGCCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAGGTTTCTTCCGTTCGTTCTGCCTCAACGAGTATATATGTGTGAACTCTGTTTGACTTTAAATTTCTTCTGGATGTGTCAGATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACT</genome_strand>
        <mrna_strand>GAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG...............................................................................................TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAG...............................................................................ATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541321" ref_strand="+" ref_description="SGN-E541321 [TUS-62-A22](-)">
      <seq>cccggaacttagataccgaagaagctgacagacctgttagccctcccttacatcttgcagcaggattaggaattgggttaatctagttggtggcagctctcctgttgattatactgcagctgtatctgatatggacggaaatgccgaggaggagtacatgagaatgatcaaagaatatcctcatcactccgtgcttttaagaaactatgctcagtttcttagtcagtctaagggagacctactaggtgctgaagaatattactcacacgcaatactagctgatcctactgatggagaaactatttcacagtatgccatgttgatatggcaacttcatcaggataaagataaagcctcaacctactttaagagggcagtacaagcttctccacaagacagcgacgtgcttgctgcatatgctaggtttctctggcaaacagaggaagatgaagacggagaagaagatgaaacgttaggtgatcacaatggagcgccacttctgcaaggagtcgcctaaagcctgatgtcaaatgaatttcacaatccagattctaattcatattttagtttctcaagcttttcgcattatctaaagacttggagatttctcttgttgtggaggatcaactattctgggaaaatttttagatggtaagtgttgtttaatgagcaataaaatgtgcacaataatgttaaattgactttgtacaatgttatttttgggaataatgatagcagttgaaagagttgaatgaaaaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="2391" stop="4618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2691" g_stop="2917" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3405" g_stop="3577" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="399" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3952" g_stop="4318" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="766" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E541321" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2691" e_stop="2917"/>
          <exon e_start="3405" e_stop="3577"/>
          <exon e_start="3952" e_stop="4318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAGGTGAATGTTTCATATTTTCTGCACTAAATGTTCTTTATTAACATGTATATCATCCATCATATGCTTACGACAATGCCCATTTGATATCTATATATTATCTTGATTTAGAAATGTGTGATTGTCCGAAGCTGCAAACATCGACACAGTCGTTCTCCTTAAGTGTCTGAGATGTCTCAAGCTCCCTCCCGAATATGCTTTTTAAGATTTCAGCCCTTTCTTTAAATTGTACAAAAGAACAGCTGGTCATCCTAATTCAGTAGGATTGGGATGGAGAAATATAAATGCATGCTCAAATATGAAATTTTCTTGAACATTATGTCATTCCTTTCACCAGATCTTTACAATAGCTACAACAGTTTATCGTTTACTTGTCAGAACGTAACCAAAAACAAGAAAAGCTATCTCCCTTCATTGGTGCTTACATATTAATAATATCGACTGGTCTTGCTAATTCTGACATTTCTCATGTTTGCTGTTGGACTGGCAGTCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAGGTAATATTGAATTGAAGCCCCTCGGTTTTTTATTCGCAACACGTTGAATTAAAAGTATAGCGGGAACTTAATAACCTAAGCACTTTTCCTACTTGGTCAGTTATTAAGATGATTTTACAGATTTATGTGATGTGAACGAAATCTGCTACTGTTTGATAACATTGAAAAGGTTAATGACAAAAGATACTTATACAAGGTTGATGGTAACTTGGTATTATGTGAATGTATTCGTGGAAAAATATAAGAATTTTGGTGATCTTTGGTGTGATATCAAAGCATTTGTACGTTGCGTTTATAATTGCTACTTGCACATCAAGTTCATTTTTCTCATTGTCTGAGACACTGAGTTACTAGCTTGCTTTTTTGCTTTTCAGCGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATA</genome_strand>
        <mrna_strand>CCCGGAACTTAGATACCGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGG-GTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320119" ref_strand="+" ref_description="SGN-E320119 [cTOB-21-J17]">
      <seq>attatactgcagctgtatctgatatggacggaaatgccgaggaggagtacatgagaatgatcaaagaatatcctcatcactccgtgcttttaagaaactatgctcagtttcttagtcagtctaagggagacctactaggtgctgaagaatattactcacacgcaatactagctgatcctactgatggagaaactatttcacagtatgccatgttgatatggcaacttcatcaggataaagataaagcctcaacctactttaggagggcagtacaagcttctccacaagacagcgacgtgcttgctgcatatgctaggtttctctggcaaacggaggaagatgaagacggagaagaagatgaaacggtaggtgatcacaatggagcgccacttctgcaaggagtcgcctaaagcctgatgtcgaatgaatttcacaatccagattctaattcatattttagtttctcaagcttttcgcattatctaaagacttggagatttctcttgttgtggaggatcaactattctgggaaaatttttagatggtaagtgttgtttaatgagcaatagaatgtgcacaataatgttagattgactttgtacaatgttatttttgggaataatgatagcagttgaaagagttgaatgaaaaattaaatagtgactctgcattgtagtaatatactgttttgtacctctatttgtatacaacattcacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="2499" stop="4685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2799" g_stop="2917" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3405" g_stop="3577" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="292" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3952" g_stop="4385" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="726" r_length="434" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E320119" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2799" e_stop="2917"/>
          <exon e_start="3405" e_stop="3577"/>
          <exon e_start="3952" e_stop="4385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAGGTGAATGTTTCATATTTTCTGCACTAAATGTTCTTTATTAACATGTATATCATCCATCATATGCTTACGACAATGCCCATTTGATATCTATATATTATCTTGATTTAGAAATGTGTGATTGTCCGAAGCTGCAAACATCGACACAGTCGTTCTCCTTAAGTGTCTGAGATGTCTCAAGCTCCCTCCCGAATATGCTTTTTAAGATTTCAGCCCTTTCTTTAAATTGTACAAAAGAACAGCTGGTCATCCTAATTCAGTAGGATTGGGATGGAGAAATATAAATGCATGCTCAAATATGAAATTTTCTTGAACATTATGTCATTCCTTTCACCAGATCTTTACAATAGCTACAACAGTTTATCGTTTACTTGTCAGAACGTAACCAAAAACAAGAAAAGCTATCTCCCTTCATTGGTGCTTACATATTAATAATATCGACTGGTCTTGCTAATTCTGACATTTCTCATGTTTGCTGTTGGACTGGCAGTCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAGGTAATATTGAATTGAAGCCCCTCGGTTTTTTATTCGCAACACGTTGAATTAAAAGTATAGCGGGAACTTAATAACCTAAGCACTTTTCCTACTTGGTCAGTTATTAAGATGATTTTACAGATTTATGTGATGTGAACGAAATCTGCTACTGTTTGATAACATTGAAAAGGTTAATGACAAAAGATACTTATACAAGGTTGATGGTAACTTGGTATTATGTGAATGTATTCGTGGAAAAATATAAGAATTTTGGTGATCTTTGGTGTGATATCAAAGCATTTGTACGTTGCGTTTATAATTGCTACTTGCACATCAAGTTCATTTTTCTCATTGTCTGAGACACTGAGTTACTAGCTTGCTTTTTTGCTTTTCAGCGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAATGACAA</genome_strand>
        <mrna_strand>ATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAGGAGGGCAGTACAAGCTTCTCCACAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACGGAGGAAGATGAAGACGGAGAAGAAGATGAAACGGTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCGAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAGAATGTGCACAATAATGTTAGATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321352" ref_strand="+" ref_description="SGN-E321352 [cTOB-23-F6]">
      <seq>attatactgcagctgtatctgatatggacggaaatgccgaggaggagtacatgagaatgatcaaagaatatcctcatcactccgtgcttttaagaaactatgctcagtttcttagtcagtctaagggagacctactaggtgctgaagaatattactcacacgcaatactagctgatcctactgatggagaaactatttcacagtatgccatgttgatatggcaacttcatcaggataaagataaagcctcaacctactttaagagggcagtacaagcttctccacaagacagcgacgtgcttgctgcatatgctaggtttctctggcaaacagaggaagatgaagacggagaagaagatgaaacgttaggtgatcacaatggagcgccacttctgcaaggagtcgcctaaagcctgatgtcaaatgaatttcacaatccagattctaattcatattttagtttctcaagcttttcgcattatctaaagacttggagatttctcttgttgtggaggatcaactattctgggaaaatttttagatggtaagtgttgtttaatgagcaataaaatgtgcacaataatgttaaattgactttgtacnatgttatttttggggataatgatagcagttgaaagagttgaatgaaaaattaaatagtgactctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="2499" stop="4631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2799" g_stop="2917" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3405" g_stop="3577" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="292" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3952" g_stop="4331" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="672" r_length="380" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E321352" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2799" e_stop="2917"/>
          <exon e_start="3405" e_stop="3577"/>
          <exon e_start="3952" e_stop="4331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAGGTGAATGTTTCATATTTTCTGCACTAAATGTTCTTTATTAACATGTATATCATCCATCATATGCTTACGACAATGCCCATTTGATATCTATATATTATCTTGATTTAGAAATGTGTGATTGTCCGAAGCTGCAAACATCGACACAGTCGTTCTCCTTAAGTGTCTGAGATGTCTCAAGCTCCCTCCCGAATATGCTTTTTAAGATTTCAGCCCTTTCTTTAAATTGTACAAAAGAACAGCTGGTCATCCTAATTCAGTAGGATTGGGATGGAGAAATATAAATGCATGCTCAAATATGAAATTTTCTTGAACATTATGTCATTCCTTTCACCAGATCTTTACAATAGCTACAACAGTTTATCGTTTACTTGTCAGAACGTAACCAAAAACAAGAAAAGCTATCTCCCTTCATTGGTGCTTACATATTAATAATATCGACTGGTCTTGCTAATTCTGACATTTCTCATGTTTGCTGTTGGACTGGCAGTCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAGGTAATATTGAATTGAAGCCCCTCGGTTTTTTATTCGCAACACGTTGAATTAAAAGTATAGCGGGAACTTAATAACCTAAGCACTTTTCCTACTTGGTCAGTTATTAAGATGATTTTACAGATTTATGTGATGTGAACGAAATCTGCTACTGTTTGATAACATTGAAAAGGTTAATGACAAAAGATACTTATACAAGGTTGATGGTAACTTGGTATTATGTGAATGTATTCGTGGAAAAATATAAGAATTTTGGTGATCTTTGGTGTGATATCAAAGCATTTGTACGTTGCGTTTATAATTGCTACTTGCACATCAAGTTCATTTTTCTCATTGTCTGAGACACTGAGTTACTAGCTTGCTTTTTTGCTTTTCAGCGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATT</genome_strand>
        <mrna_strand>ATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACNATGTTATTTTTGGGGATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543528" ref_strand="+" ref_description="SGN-E543528 [TUS-65-G7](-)">
      <seq>gcaatactagctgatcctactgatggagaaactatttcacagtatgccatgttgatatggcaacttcatcaggataaagataaagcctcaacctactttaagagggcagtacaagcttctccacaagacagcgacgtgcttgctgcatatgctaggtttctctggcaaacagaggaagatgaagacggagaagaagatgaaacgttaggtgatcacaatggagcgccacttctgcaaggagtcgcctaaagcctgatgtcaaatgaatttcacaatccagattctaattcatattttagtttctcaagcttttcgcattatctaaagacttggagatttctcttgttgtggaggatcaactattctgggaaaatttttagatggtaagtgttgtttaatgagcaataaaatgtgcacaataatgttaaattgactttgtacaatgttatttttgggaataatgatagcagttgaaagagttgaatgaaaaattaaatagtgactctgcattgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="3147" stop="4642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3447" g_stop="3577" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3952" g_stop="4343" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="523" r_length="392" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E543528" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3447" e_stop="3577"/>
          <exon e_start="3952" e_stop="4343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAGGTAATATTGAATTGAAGCCCCTCGGTTTTTTATTCGCAACACGTTGAATTAAAAGTATAGCGGGAACTTAATAACCTAAGCACTTTTCCTACTTGGTCAGTTATTAAGATGATTTTACAGATTTATGTGATGTGAACGAAATCTGCTACTGTTTGATAACATTGAAAAGGTTAATGACAAAAGATACTTATACAAGGTTGATGGTAACTTGGTATTATGTGAATGTATTCGTGGAAAAATATAAGAATTTTGGTGATCTTTGGTGTGATATCAAAGCATTTGTACGTTGCGTTTATAATTGCTACTTGCACATCAAGTTCATTTTTCTCATTGTCTGAGACACTGAGTTACTAGCTTGCTTTTTTGCTTTTCAGCGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATAC</genome_strand>
        <mrna_strand>GCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746471" ref_strand="+" ref_description="SGN-E746471 [GI|47104983]">
      <seq>gagaaccagtggtctcaagcggtcactccattttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatcatggaatggtggtgtccttgtgatggtttcaggttctgtcagtgtgaaaggtatcaataggagtaggaagttcgttcaatcatttttccttgcaccccaggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgaggagcaaattcttcagcaaccattggcctatctagcacattcgaaccttgattcaaagctgaatgtttccaatgcacttcaggagcaagtgcccaactacatgtttggtggagaaatccaagcaagggagtttgttgatgctcctaaaattgaagataacgggccagtcaataactatagttttccggaggaacggcttcagcatgtctctgaagctgagaatatccttgaagataattttgcggttcagtcgaacggcccacttcagagtacaattaatgcagtacaagaccatttatcctgccctgttgaggaacctgttgcagagccccaaaagcatacttatgcttctattctacaagttactaaagggaattctgcacaaggactggcacagtcttctctcaacaaatctacacctcctccttcagagtggcaacatgtgccagagcctcctgctttgccatcagttcattcgactaatactattgagaggtatactgaggcaacagaagaggcttcagctgttgaagatgaagttgaagtcaagtctgtatatgtcaaaaatgttcctaccacaatggctgcttatgaaattgaggaggaattcaaaaagtttggtaaattaaagcctgatgctgttgccattagaacgcgaaaggacattgatgtatgctatgcatttgtcgaatttgaagatgtaactggggttcagaatgcaattgaggcatctactgttcagattggtggacaccagttgtacattgaaggaaggagaccgaacagaaataacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggacggaagggggcgctatggtggccgtggttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttctgacctgctagtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11657" stop="4496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11358" g_stop="11027" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="467" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8457" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="774" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7774" g_stop="7509" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="1040" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7508" i_stop="7403" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7402" g_stop="7219" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1224" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7096" g_stop="6975" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1225" r_stop="1346" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6887" g_stop="6822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1347" r_stop="1412" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6491" g_stop="6413" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1413" r_stop="1491" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="5254" g_stop="4785" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1492" r_stop="1961" r_length="470" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E746471" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1961</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11358" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8457"/>
          <exon e_start="7774" e_stop="7509"/>
          <exon e_start="7402" e_stop="7219"/>
          <exon e_start="7096" e_stop="6975"/>
          <exon e_start="6887" e_stop="6822"/>
          <exon e_start="6491" e_stop="6413"/>
          <exon e_start="5254" e_stop="4785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAGGTATGAGTTCAATCTTCAAGGTTTTCATCCTAAGATTGGTCTGATTGTTTTTTTTTGGGGGGGGGGGGATTCTCTAACTTCTTTTGTTTCATATTACTGTCTTTTAGATTAGTGTTACTATCCTTAAAAAATGACTTTTTTAAAGAAAAATCATTCCTGTAATGGTGAAGCCATTTTTACCTTTCTCTTGGAGGATTTACCCCACACAGGTAGGGGTAACGCCTATGTACATCTAACCCTCCCCAGACCCCACTTGTGGATGACACTGGGTATGTTGTACCTTTTCTGGAGGAGGAGAGAGGGTCCTGGGTTGTGAAATTGGAACAGAGCCATGCTGCGAGGGGGAGCATGGTGAATGCCTCACCCCTAAAATAAGTTGTCATTGGGGGAGAATATTACTAGTAGCTTCAAGTGCTGAAGCTCTCTATTTTCCCTATGTTCGTACTTTTATTTTTCTGGTGAGAAGTAGTTTTAAGTGATGTGCTATATATTGGTGAGAAGAAATTATGTACTTAAATGACAATTCTTCTGAAAGAAGACTCAGGATACTTTTTCTCTGTAATTCTACATGCTAATGCTGCAATACCACGATACTTTTTTTCTGTAATTCTACATGCTAATGCTGCAATACAACGAGACAAGAGAATGTGCATATATGAAGGATTAATGATGGTGTTTGCAGTGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATTGTATGCCATGACCCTTTTACCTTCTTTTAATGGTTACATTCTCATATTGTCTTGAGTATGCTTTTTGTGATCAACTAATTTTATTTGGTTGATTCTAATTTGGAAGCTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTTTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAGGTTAGTTTCTCGTACTTTGGCATAATGTACTCATCCTGTCTTCTCAGGGATGTGAGTTATTTTTTAAGGGACCTCATTTGAGTGATATGCTTTTATGATTTTCCTTTTTGAACCTTTTGCAGTTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAGGTTTGTTCTATCATCTTTCTTTTGCCCTATACTCTTAAATCTAGATAAGGTCAATATTAAGTTCAATTGGAATTTGATGTGATGCAGGACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAGGTTTGAATTGACATTTCAAAATTTTGAGCCATCTTTATTATCCTTTTCGTGTTAAAGTTTCAATGCAATTGAGGGTTGAACTAACAGCCTATGTTTTTGTTATTTGATTAATTGAGAATGATGCTACATTTTATGTATGAGGTCAAATGAAGTAATAAACTGGCACAAGTTTGAAGTATTCCATGTAAAATTATGTGGGAGTTATGAATATGTTCTTTTTCGTTCTATTTATCTCTCCTTCATTGAATTGTTATTAATACCTTCAGCTAAGACTAATTACTGCATTTACATTCAGAGTAGCTACTGAAATCTATGTAAACTTTGTTGCAGGCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGATATTTTGCGCAAG</genome_strand>
        <mrna_strand>GAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATT..........................................................................................................CTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTTTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAG..........................................................................................................................TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG.......................................................................................GACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690925" ref_strand="+" ref_description="SGN-E690925 [LH_Ea04M11]">
      <seq>tagatgaagttgaagtcaagtctgtatatgtcaaaaatgttcctaccacaatggctgcttatgaaattgaggaggaattcaaaaagtttggtaaattaaagcctgatgctgttgccattagaacgcgaaaggacattgatgtatgctatgcatttgtcgaatttgaaaatgtaactggggttcagaatgcaattgaggcatctactgttcagattggtggacaccagttgtacattgaaggaaggagaccgaacagaaataacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggatggaagggggcgctatggtggccgtgtttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaagaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggattaagctgaagttgaattcatgaaggacagacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataattttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttttgacctgctagtcgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="7401" stop="4496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7227" g_stop="7219" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7096" g_stop="6975" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="131" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6887" g_stop="6822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="197" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6491" g_stop="6413" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="276" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5254" g_stop="4785" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="744" r_length="468" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E690925" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7227" e_stop="7219"/>
          <exon e_start="7096" e_stop="6975"/>
          <exon e_start="6887" e_stop="6822"/>
          <exon e_start="6491" e_stop="6413"/>
          <exon e_start="5254" e_stop="4785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAAGGTTAGTTTCTCGTACTTTGGCATAATGTACTCATCCTGTCTTCTCAGGGATGTGAGTTATTTTTTAAGGGACCTCATTTGAGTGATATGCTTTTATGATTTTCCTTTTTGAACCTTTTGCAGTTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAGGTTTGTTCTATCATCTTTCTTTTGCCCTATACTCTTAAATCTAGATAAGGTCAATATTAAGTTCAATTGGAATTTGATGTGATGCAGGACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAGGTTTGAATTGACATTTCAAAATTTTGAGCCATCTTTATTATCCTTTTCGTGTTAAAGTTTCAATGCAATTGAGGGTTGAACTAACAGCCTATGTTTTTGTTATTTGATTAATTGAGAATGATGCTACATTTTATGTATGAGGTCAAATGAAGTAATAAACTGGCACAAGTTTGAAGTATTCCATGTAAAATTATGTGGGAGTTATGAATATGTTCTTTTTCGTTCTATTTATCTCTCCTTCATTGAATTGTTATTAATACCTTCAGCTAAGACTAATTACTGCATTTACATTCAGAGTAGCTACTGAAATCTATGTAAACTTTGTTGCAGGCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGATATTTTGCGCAAG</genome_strand>
        <mrna_strand>TAGATGAAG..........................................................................................................................TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG.......................................................................................GACATTGATGTATGCTATGCATTTGTCGAATTTGAAAATGTAACTGGGGTTCAGAATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGATGGAAGGGGGCGCTATGGTGGCCGTGTTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAAGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGATTAAGCT-GAAGTTGAATTCATGAAGGACAGACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAA-TTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTTTGACCTGCTAGTCGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225536" ref_strand="+" ref_description="SGN-E225536 [cLEL-17-C4](-)">
      <seq>gcgctatggtggccgtggttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttctgacctgctagtcgatattttgcgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="5508" stop="4486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5208" g_stop="4786" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="438"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E225536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5208" e_stop="4786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGATATTTTGCGCAA</genome_strand>
        <mrna_strand>GCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGATATTTTGCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615529" ref_strand="+" ref_description="SGN-E615529 [65328]">
      <seq>ggcagagttagctactccatggatggaagggggcgctatggtggccgtggttttgggagaggtggtcaagacggaggtgaccgtgactatggcagatcaaggggaaatggttactatagacaagctcctcggcaagaaagagcttaccctagcagtcagcaaagcttgagaaatgagcagtactcatgggaataagctgaagttgaattcatgaaggacagacaataccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcagaatttagatttgtggaagaaagcatcccaaattcatataattttttggcagaaatagcaagtgttgctttttccgtacatgaatagacttttactgaaaaggactattaatgcagttttggcctgctagttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="5540" stop="4531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5240" g_stop="4788" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E615529" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5240" e_stop="4788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTG-GTTTTCAGTACATGAATAGACTTTTACT-TGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGATATTTTGCGC</genome_strand>
        <mrna_strand>GGCAGAGTTAGCTACTCCATGGATGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGACTATGGCAGATCAAGGGGAAATGGTTACTATAGACAAGCTCCTCGGCAAGAAAGAGCTTACCCTAGCAGTCAGCAAAGCTTGAGAAATGAGCAGTACTCATGGGAATAAGCT-GAAGTTGAATTCATGAAGGACAGACAAT--ACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAGAATTTAGATTTGTGGAAGAAAGCATCCCAAATTCATATAA-TTTTTTGGCAGAAATAGCAAGTGTTGCTTTTTCCGTACATGAATAGACTTTTACTGAAAAGGACTATTAATGCAGTTTTGGCCTGCTAGTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215393" ref_strand="+" ref_description="SGN-E215393 [cLEL-20-G5](-)">
      <seq>gttagctactccatggacggaagggggcgctatggtggccgtggttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttctgacctgctagtcgataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="5534" stop="4496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5234" g_stop="4797" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="454"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E215393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5234" e_stop="4797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGAT</genome_strand>
        <mrna_strand>GTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215491" ref_strand="+" ref_description="SGN-E215491 [cLEL-20-G11](-)">
      <seq>gaagggggcgctatggtggccgtggttttggaagaggtggtcaagacgcaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttctgacctgctagtcgataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="5515" stop="4496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5215" g_stop="4797" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="435"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E215491" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5215" e_stop="4797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGAT</genome_strand>
        <mrna_strand>GAAGGGGGCGCTATGGTGGCCGTGGTTTTGGAAGAGGTGGTCAAGACGCAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215297" ref_strand="+" ref_description="SGN-E215297 [cLEL-20-G5](-)">
      <seq>tggttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaagggcaaatggttattatagccccactcctcggcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttctgacctgctagtcgataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="5493" stop="4496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5193" g_stop="4797" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="413"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E215297" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5193" e_stop="4797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGAT</genome_strand>
        <mrna_strand>TGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGCAAATGGTTATTATAGCCCCACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696145" ref_strand="+" ref_description="SGN-E696145 [LH_Ea08F23](-)">
      <seq>tgagaggtaccccgaggcaacagaagaggcttcagctgttgaagatgaagttgaagtcaagtctgtatatgtcaaaaatgttcctaccacaatggctgcttatgaaattgaggaggaattcaaaaagtttggtaaattaaagcctgatgctgttgccattagaacgcgaaaggacattgatgtatgctatgcatttgtcgaatttgaaaatgtaactggggttcagaatgcaattgaggcatttactgttcagattggtggacaccagttgtacattgaaggaaggagaccgaacagaaataacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggatggaagggggcgctatggtggccgtgtttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaagaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggattaagctgaagttgaattcatgaaggacagacaataccccttcagtacaagccatgttgccaacagcttttttgttttcatagttttccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataattttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagggttgccctgctcgtcggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="7568" stop="4516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7268" g_stop="7219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7096" g_stop="6975" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="172" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6887" g_stop="6822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="238" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6491" g_stop="6413" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="317" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5254" g_stop="4799" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="771" r_length="454" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="773" polyA_stop="799"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E696145" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7268" e_stop="7219"/>
          <exon e_start="7096" e_stop="6975"/>
          <exon e_start="6887" e_stop="6822"/>
          <exon e_start="6491" e_stop="6413"/>
          <exon e_start="5254" e_stop="4799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAGGTTAGTTTCTCGTACTTTGGCATAATGTACTCATCCTGTCTTCTCAGGGATGTGAGTTATTTTTTAAGGGACCTCATTTGAGTGATATGCTTTTATGATTTTCCTTTTTGAACCTTTTGCAGTTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAGGTTTGTTCTATCATCTTTCTTTTGCCCTATACTCTTAAATCTAGATAAGGTCAATATTAAGTTCAATTGGAATTTGATGTGATGCAGGACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAGGTTTGAATTGACATTTCAAAATTTTGAGCCATCTTTATTATCCTTTTCGTGTTAAAGTTTCAATGCAATTGAGGGTTGAACTAACAGCCTATGTTTTTGTTATTTGATTAATTGAGAATGATGCTACATTTTATGTATGAGGTCAAATGAAGTAATAAACTGGCACAAGTTTGAAGTATTCCATGTAAAATTATGTGGGAGTTATGAATATGTTCTTTTTCGTTCTATTTATCTCTCCTTCATTGAATTGTTATTAATACCTTCAGCTAAGACTAATTACTGCATTTACATTCAGAGTAGCTACTGAAATCTATGTAAACTTTGTTGCAGGCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCG</genome_strand>
        <mrna_strand>TGAGAGGTACCCCGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAG..........................................................................................................................TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG.......................................................................................GACATTGATGTATGCTATGCATTTGTCGAATTTGAAAATGTAACTGGGGTTCAGAATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................GCATTTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGATGGAAGGGGGCGCTATGGTGGCCGTGTTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAAGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGATTAAGCT-GAAGTTGAATTCATGAAGGACAGACAATACCCCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTTTTCATAGTTTTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAA-TTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGGGTTGCCCTGCTCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732987" ref_strand="+" ref_description="SGN-E732987 [LB03CF12]">
      <seq>cgtgttcagattggtggacaccagttgtacattgaaggaaggagaccgaacagaaataacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggacggaagggggcgctatggtggccgtggttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttctgacctgctagtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="6783" stop="4496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6485" g_stop="6413" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5254" g_stop="4799" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="529" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="587"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E732987" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6485" e_stop="6413"/>
          <exon e_start="5254" e_stop="4799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCG</genome_strand>
        <mrna_strand>CGTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595813" ref_strand="-" ref_description="SGN-E595813 [39094]">
      <seq>atgtatgctatgcatttgtcgaatttgaagatgtaactgggtctcagaatgcaattgaggcatctactgttcagattggtggacaccagttgtacattgaagggaggagaccgtacagaaacaacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggacggaagggggcgctatggtggccgtggttttggtagaggtggtcaagacggtggtgaccgtgactatggcagatcaaggggaaatggttactatagacaagctcctcggcaagaaagaacttaccctagcaatcagcaaagcttgagaaatgagcagtactcatgggaataagctgaagttgaattcatgaaggacagacaataccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcagaatttagatttgtggaagaaagcatcccaaattcatataattttttggcagaaatagtaagtgttgctttttccgtacatgaatagacttttactgaaaaaaataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="7180" stop="4531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6880" g_stop="6822" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6491" g_stop="6413" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="138" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5254" g_stop="4819" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="571" r_length="433" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E595813" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595813" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6880" e_stop="6822"/>
          <exon e_start="6491" e_stop="6413"/>
          <exon e_start="5254" e_stop="4819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAGGTTTGAATTGACATTTCAAAATTTTGAGCCATCTTTATTATCCTTTTCGTGTTAAAGTTTCAATGCAATTGAGGGTTGAACTAACAGCCTATGTTTTTGTTATTTGATTAATTGAGAATGATGCTACATTTTATGTATGAGGTCAAATGAAGTAATAAACTGGCACAAGTTTGAAGTATTCCATGTAAAATTATGTGGGAGTTATGAATATGTTCTTTTTCGTTCTATTTATCTCTCCTTCATTGAATTGTTATTAATACCTTCAGCTAAGACTAATTACTGCATTTACATTCAGAGTAGCTACTGAAATCTATGTAAACTTTGTTGCAGGCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTG-GTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATG</genome_strand>
        <mrna_strand>ATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGTCTCAGAATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGGAGGAGACCGTACAGAAACAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGTAGAGGTGGTCAAGACGGTGGTGACCGTGACTATGGCAGATCAAGGGGAAATGGTTACTATAGACAAGCTCCTCGGCAAGAAAGAACTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAGTACTCATGGGAATAAGCT-GAAGTTGAATTCATGAAGGACAGACAAT--ACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAGAATTTAGATTTGTGGAAGAAAGCATCCCAAATTCATATAA-TTTTTTGGCAGAAATAGTAAGTGTTGCTTTTTCCGTACATGAATAGACTTTTACTGAAAAAAATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221358" ref_strand="+" ref_description="SGN-E221358 [cLEL-22-F19](-)">
      <seq>gcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="5409" stop="4525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5109" g_stop="4826" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="286" polyA_stop="304"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E221358" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5109" e_stop="4826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATG-AAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATT</genome_strand>
        <mrna_strand>GCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694765" ref_strand="+" ref_description="SGN-E694765 [LH_Ea04M11](-)">
      <seq>agatgaagttgaagtcaagtctgtatatgtcaaaaatgttcctaccacaatggctgcttatgaaattgaggaggaattcaaaaagtttggtaaattaaagcctgatgctgttgccattagaacgcgaaaggacattgatgtatgctatgcatttgtcgaatttgaaaatgtaactggggttcagaatgcaattgaggcatctactgttcagattggtggacaccagttgtacattgaaggaaggagaccgaacagaaataacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggatggaagggggcgctatggtggccgtgtttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaagaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggattaagctgaagttgaattcatgaaggacagacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcaatagttctccaaaacacttagtatactttgagaaggcatcaaaaatttagagtttgtggaagggaaagcatccctaaattcaatataattttttggcagagaatatgcaaagggttggttttcacgtacactgaatagacttttacttgatataaaagggtttatgcacgttttgacctcgctagtcgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="7401" stop="4532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7226" g_stop="7219" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7096" g_stop="6975" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="130" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6887" g_stop="6822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="196" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6491" g_stop="6413" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="275" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5254" g_stop="4832" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="710" r_length="435" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="749" polyA_stop="770"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E694765" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7226" e_stop="7219"/>
          <exon e_start="7096" e_stop="6975"/>
          <exon e_start="6887" e_stop="6822"/>
          <exon e_start="6491" e_stop="6413"/>
          <exon e_start="5254" e_stop="4832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAAGGTTAGTTTCTCGTACTTTGGCATAATGTACTCATCCTGTCTTCTCAGGGATGTGAGTTATTTTTTAAGGGACCTCATTTGAGTGATATGCTTTTATGATTTTCCTTTTTGAACCTTTTGCAGTTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAGGTTTGTTCTATCATCTTTCTTTTGCCCTATACTCTTAAATCTAGATAAGGTCAATATTAAGTTCAATTGGAATTTGATGTGATGCAGGACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAGGTTTGAATTGACATTTCAAAATTTTGAGCCATCTTTATTATCCTTTTCGTGTTAAAGTTTCAATGCAATTGAGGGTTGAACTAACAGCCTATGTTTTTGTTATTTGATTAATTGAGAATGATGCTACATTTTATGTATGAGGTCAAATGAAGTAATAAACTGGCACAAGTTTGAAGTATTCCATGTAAAATTATGTGGGAGTTATGAATATGTTCTTTTTCGTTCTATTTATCTCTCCTTCATTGAATTGTTATTAATACCTTCAGCTAAGACTAATTACTGCATTTACATTCAGAGTAGCTACTGAAATCTATGTAAACTTTGTTGCAGGCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTC-ATAGTTCTCCAAAACA-TTAGTATACTTTGAGAA-GCATC-AAAATTTAGA-TTTGTGGAA-GG-AAGCATCCCT-AATTC-ATATAATTTTTTTGGCAGA-AATA-GC-AAGTGTTGGTTTTCA-GTACA-TGAATAGACTTTTACTTGA</genome_strand>
        <mrna_strand>AGATGAAG..........................................................................................................................TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG.......................................................................................GACATTGATGTATGCTATGCATTTGTCGAATTTGAAAATGTAACTGGGGTTCAGAATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGATGGAAGGGGGCGCTATGGTGGCCGTGTTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAAGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGATTAAGCT-GAAGTTGAATTCATGAAGGACAGACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCAATAGTTCTCCAAAACACTTAGTATACTTTGAGAAGGCATCAAAAATTTAGAGTTTGTGGAAGGGAAAGCATCCCTAAATTCAATATAA-TTTTTTGGCAGAGAATATGCAAAGGGTTGGTTTTCACGTACACTGAATAGACTTTTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364891" ref_strand="+" ref_description="SGN-E364891 [cLPT-4-D10]">
      <seq>aggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgaggagcaaattcttcagcaaccattggcctatctagcacattcgaaccttgattcaaaactgaatgtttccaatgcacttcaggagcaagtgcccaactatatgtttggtggagaaatccaagcaagggagtttgttgatgctcctaaaattgaagataacgggccagtcaataactatagtttttcggaggatcggcttcagcatgtctctgaagctgagaatatccttgaagataattttgcggtgcagtcgaacggcccacttcagagtacaattaatgcagtacaagaccatttatcctgccctgttgaggaacctgttgcagagccccaaaagcatacttatgcttctattctacaagttactaaagggaattctgcacaaggactggcacagtcttctctcaacaaatctacacctccttcagagtggcaacatgtgccagagcctcctgctctgccatcagttcattcgactaatactattgagaggtataccgaggcaacagaagaggcttcagctgttgaagatgaagttgaagtcaagtctgtatatgtcaaaaatgttcctaccacaatggctgcttatgaaattgaggaggaattcaaaaagtttggtaaattaaagcctgatgctgttgccattagaacgcgaaaagacattgatgtatgctatgcatttgtcgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="8894" stop="6555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8594" g_stop="8457" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7774" g_stop="7509" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="404" r_length="266" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7508" i_stop="7403" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7402" g_stop="7219" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="585" r_length="181" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7096" g_stop="6975" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="707" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6887" g_stop="6855" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="740" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E364891" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8594" e_stop="8457"/>
          <exon e_start="7774" e_stop="7509"/>
          <exon e_start="7402" e_stop="7219"/>
          <exon e_start="7096" e_stop="6975"/>
          <exon e_start="6887" e_stop="6855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAGGTATGAGTTCAATCTTCAAGGTTTTCATCCTAAGATTGGTCTGATTGTTTTTTTTTGGGGGGGGGGGGATTCTCTAACTTCTTTTGTTTCATATTACTGTCTTTTAGATTAGTGTTACTATCCTTAAAAAATGACTTTTTTAAAGAAAAATCATTCCTGTAATGGTGAAGCCATTTTTACCTTTCTCTTGGAGGATTTACCCCACACAGGTAGGGGTAACGCCTATGTACATCTAACCCTCCCCAGACCCCACTTGTGGATGACACTGGGTATGTTGTACCTTTTCTGGAGGAGGAGAGAGGGTCCTGGGTTGTGAAATTGGAACAGAGCCATGCTGCGAGGGGGAGCATGGTGAATGCCTCACCCCTAAAATAAGTTGTCATTGGGGGAGAATATTACTAGTAGCTTCAAGTGCTGAAGCTCTCTATTTTCCCTATGTTCGTACTTTTATTTTTCTGGTGAGAAGTAGTTTTAAGTGATGTGCTATATATTGGTGAGAAGAAATTATGTACTTAAATGACAATTCTTCTGAAAGAAGACTCAGGATACTTTTTCTCTGTAATTCTACATGCTAATGCTGCAATACCACGATACTTTTTTTCTGTAATTCTACATGCTAATGCTGCAATACAACGAGACAAGAGAATGTGCATATATGAAGGATTAATGATGGTGTTTGCAGTGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATTGTATGCCATGACCCTTTTACCTTCTTTTAATGGTTACATTCTCATATTGTCTTGAGTATGCTTTTTGTGATCAACTAATTTTATTTGGTTGATTCTAATTTGGAAGCTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTTTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAGGTTAGTTTCTCGTACTTTGGCATAATGTACTCATCCTGTCTTCTCAGGGATGTGAGTTATTTTTTAAGGGACCTCATTTGAGTGATATGCTTTTATGATTTTCCTTTTTGAACCTTTTGCAGTTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAGGTTTGTTCTATCATCTTTCTTTTGCCCTATACTCTTAAATCTAGATAAGGTCAATATTAAGTTCAATTGGAATTTGATGTGATGCAGGACATTGATGTATGCTATGCATTTGTCGAATTT</genome_strand>
        <mrna_strand>AGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAACTGAATGTTTCCAATGCACTTCAGGAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAACTATATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTTCGGAGGATCGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTGCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATT..........................................................................................................CTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACA---CCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTCTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACCGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAG..........................................................................................................................TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAA.......................................................................................GACATTGATGTATGCTATGCATTTGTCGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701057" ref_strand="+" ref_description="SGN-E701057 [FA14DF09]">
      <seq>gacattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatcatggaatggtggtgtccttgtgatggtttcaggttctgtcagtgtgaaaggtatcaataggagtaggaagttcgttcaatcatttttccttgcaccccaggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgaggagcaaattcttcagcaaccattggcctatctagcacattcgaaccttgattcaaagctgaatgtttccaatgcacttcaggagcaagtgcccaactacatgtttggtggagaaatccaagcaagggagtttgttgatgctcctaaaattgaagataacgggccagtcaataactatagttttccggaggaacggcttcagcatgtctctgaagctgagaatatccttgaagataattttgcggttcagtcgaacggcccacttcagagtacaattaatgcagtacaagaccatttatcctgccctgttgaggaacctgttgcagagcccccaaaagcatacttatgcttctattctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11442" stop="7206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11142" g_stop="11027" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="251" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8457" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="558" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7774" g_stop="7509" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="825" r_length="267" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7508" i_stop="7403" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7402" g_stop="7398" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="830" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E701057" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11142" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8457"/>
          <exon e_start="7774" e_stop="7509"/>
          <exon e_start="7402" e_stop="7398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAGGTATGAGTTCAATCTTCAAGGTTTTCATCCTAAGATTGGTCTGATTGTTTTTTTTTGGGGGGGGGGGGATTCTCTAACTTCTTTTGTTTCATATTACTGTCTTTTAGATTAGTGTTACTATCCTTAAAAAATGACTTTTTTAAAGAAAAATCATTCCTGTAATGGTGAAGCCATTTTTACCTTTCTCTTGGAGGATTTACCCCACACAGGTAGGGGTAACGCCTATGTACATCTAACCCTCCCCAGACCCCACTTGTGGATGACACTGGGTATGTTGTACCTTTTCTGGAGGAGGAGAGAGGGTCCTGGGTTGTGAAATTGGAACAGAGCCATGCTGCGAGGGGGAGCATGGTGAATGCCTCACCCCTAAAATAAGTTGTCATTGGGGGAGAATATTACTAGTAGCTTCAAGTGCTGAAGCTCTCTATTTTCCCTATGTTCGTACTTTTATTTTTCTGGTGAGAAGTAGTTTTAAGTGATGTGCTATATATTGGTGAGAAGAAATTATGTACTTAAATGACAATTCTTCTGAAAGAAGACTCAGGATACTTTTTCTCTGTAATTCTACATGCTAATGCTGCAATACCACGATACTTTTTTTCTGTAATTCTACATGCTAATGCTGCAATACAACGAGACAAGAGAATGTGCATATATGAAGGATTAATGATGGTGTTTGCAGTGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAG-CCCCAAAAGCATACTTATGCTTCTATTGTATGCCATGACCCTTTTACCTTCTTTTAATGGTTACATTCTCATATTGTCTTGAGTATGCTTTTTGTGATCAACTAATTTTATTTGGTTGATTCTAATTTGGAAGCTACA</genome_strand>
        <mrna_strand>GACATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCCAAAAGCATACTTATGCTTCTATT..........................................................................................................CTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337517" ref_strand="+" ref_description="SGN-E337517 [cTOE-11-H20]">
      <seq>ggtgaaaggtattaataggagtaggaagttcgttcaatcatttttccttgcaccccaggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgaggagcaaattcttcagcaaccattggcctatctagcacattcgaaccttgattcaaagctgaatgtttccaatgcacttcaggagcaagtgcccaactacatgtttggtggagaaatccaagcaagggagtttgttgatgctcctaaaattgaagataacgggccagtcaataactatagttttccggaggaacggcttcagcatgtctctgaagctgagaatatccttgaagataattttgcggttcagtcgaacggcccacttcagagtacaattaatgcagtacaagaccatttatcctgccctgttgaggaacctgttgcagagccccaaaagcatacttatgcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="8949" stop="7211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8650" g_stop="8457" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7774" g_stop="7511" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="458" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E337517" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8650" e_stop="8457"/>
          <exon e_start="7774" e_stop="7511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAGGTATGAGTTCAATCTTCAAGGTTTTCATCCTAAGATTGGTCTGATTGTTTTTTTTTGGGGGGGGGGGGATTCTCTAACTTCTTTTGTTTCATATTACTGTCTTTTAGATTAGTGTTACTATCCTTAAAAAATGACTTTTTTAAAGAAAAATCATTCCTGTAATGGTGAAGCCATTTTTACCTTTCTCTTGGAGGATTTACCCCACACAGGTAGGGGTAACGCCTATGTACATCTAACCCTCCCCAGACCCCACTTGTGGATGACACTGGGTATGTTGTACCTTTTCTGGAGGAGGAGAGAGGGTCCTGGGTTGTGAAATTGGAACAGAGCCATGCTGCGAGGGGGAGCATGGTGAATGCCTCACCCCTAAAATAAGTTGTCATTGGGGGAGAATATTACTAGTAGCTTCAAGTGCTGAAGCTCTCTATTTTCCCTATGTTCGTACTTTTATTTTTCTGGTGAGAAGTAGTTTTAAGTGATGTGCTATATATTGGTGAGAAGAAATTATGTACTTAAATGACAATTCTTCTGAAAGAAGACTCAGGATACTTTTTCTCTGTAATTCTACATGCTAATGCTGCAATACCACGATACTTTTTTTCTGTAATTCTACATGCTAATGCTGCAATACAACGAGACAAGAGAATGTGCATATATGAAGGATTAATGATGGTGTTTGCAGTGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTA</genome_strand>
        <mrna_strand>GGTGAAAGGTATTAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728245" ref_strand="+" ref_description="SGN-E728245 [LA17AF12]">
      <seq>ggtcactccattttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatcatggaatggtggtgtccttgtgatggtttcaggttctgtcagtgtgaaaggtatcaataggagtaggaagttcgttcaatcatttttccttgcaccccaggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgaggagcaaattcttcagcaaccattggcctatctagcacattcgaaaccttgattcaaagctgaatgtttcccatgcacttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11638" stop="8164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11338" g_stop="11027" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="447" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8464" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="748" r_length="301" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E728245" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11338" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCG-AACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAG</genome_strand>
        <mrna_strand>GGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAAACCTTGATTCAAAGCTGAATGTTTCCCATGCACTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345811" ref_strand="+" ref_description="SGN-E345811 [cTOF-18-P11]">
      <seq>tcactccattttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatncatggaatggtggtgtccttgtgatggtttcaggttctgtcagtgtgaaaggtatcaataggagtaggaagttcgttcaatcatttttccttgcaccccaggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgaggagcaaattcttcagcaaccattggcctatctagcacattcgaaccttgattcaaagctgaatgtttccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11636" stop="8172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11336" g_stop="11027" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="445" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8472" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="738" r_length="293" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E345811" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11336" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAAT-CATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATG</genome_strand>
        <mrna_strand>TCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATNCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579780" ref_strand="+" ref_description="SGN-E579780 [86912]">
      <seq>ctctttctctctctagaaccagtggtctcaagcggtcactccattttctctctctagaaattgaagagtcagtgacgagcgaattaagtgctattcactgtttgtggagtgatgggagaaaactctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgaaaatctagggtttttttggggattttagatcttttgttagatctaggttttttagattctcattctaattggattgacgagttcatttctaccgctgcttaagctgccgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatactttgtgggccagtattatcagatgttgcagacccaaccggattttgttcaccagttctacagtgatgctagtaccgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcatgtcactccagtacactggaatagagataaaaactctccattccttggaatcatggaatggtggtgtccttgtgatggtttcaggttctgtcaatgtgaaaggtatcaacaggagtaggaagtttgtacaatcatttttccttgcaccccaggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgagaacaaattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11671" stop="8232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11371" g_stop="11027" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="472" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8532" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="703" r_length="231" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E579780" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11371" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCT---GCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTC</genome_strand>
        <mrna_strand>CTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGAAGAGTCAGTGACGAGCGAATTAAGTGCTATTCACTGTTTGTGGAGTG--ATGGGAGAAAACTCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGC--TGAAAATCTAGGG--TTTTTTT---GGGGATTTTAGATCTTTTGTTAGATCTAGGTTTT-TT-AGATTCTCATTCTAATTGGATTGACGAGTTCATTTCTACCGCTGCTTAAGCTGCCGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTTGTGGGCCAGTATTATCAGATGTTGCAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACCGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCATGTCACTCCAGTACACTGGAATAGAGATAAAAACTCTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAATGTGAAAGGTATCAACAGGAGTAGGAAGTTTGTACAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGA-GAACAAATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288646" ref_strand="+" ref_description="SGN-E288646 [cLES-8-J15]">
      <seq>ttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctggaaaaaggatactttgtcctcaatgatatatatcactatgttgatgaggagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11626" stop="8239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11326" g_stop="11027" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="435" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8593" i_length="1320">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8592" g_stop="8539" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="489" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E288646" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11326" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8592" e_stop="8539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAA</genome_strand>
        <mrna_strand>TTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGATACTTTGTCCTCAATGATATATATCACTATGTTGATGAGGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299756" ref_strand="+" ref_description="SGN-E299756 [cLEW-1-L20]">
      <seq>ttttctttttctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagccccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatcatggaatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11628" stop="8382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11328" g_stop="11027" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="437" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8682" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="519" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E299756" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11328" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTG</genome_strand>
        <mrna_strand>TTTTCTTTTTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCCCCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319566" ref_strand="+" ref_description="SGN-E319566 [cTOB-15-B2]">
      <seq>tcaagcggtcactccattttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatcatggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11644" stop="8386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11344" g_stop="11027" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8686" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="531" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E319566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11344" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAAT</genome_strand>
        <mrna_strand>TCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445498" ref_strand="+" ref_description="SGN-E445498 [cSTA-45-P17]">
      <seq>cggtcactcaattttctctctctagaaattgaagagtcagtgacgagtgaattcagtgctattcactgtttgtggagtgatgggagaaaactctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgaaaatctagggtttttttgggggattttagatcttttgttagatctaggttttttagattctcattctaattggattgacgagttcatttctaccgctgcttaagctgccgccgccaccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtgggaacatactttgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtaccgtgcttcgaattgattccagcaccagagagactgcttcatgaatgctgcaaattcacaccctgatcatgtcactccagtacactggaatagagataaaaacgctccattccttggaatcatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11639" stop="8387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11339" g_stop="11027" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="441" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8687" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="518" r_length="77" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E445498" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11339" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCG---CCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAA</genome_strand>
        <mrna_strand>CGGTCACTCAATTTTCTCTCTCTAGAAATTGAAGAGTCAGTGACGAGTGAATTCAGTGCTATTCACTGTTTGTGGAGTG--ATGGGAGAAAACTCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGC--TGAAAATCTAGGG--TTTTTTT--GGGGGATTTTAGATCTTTTGTTAGATCTAGGTTTT-TT-AGATTCTCATTCTAATTGGATTGACGAGTTCATTTCTACCGCTGCTTAAGCTGCCGCCGCCACCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAACATACTTTGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACCGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCATGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTGATCATGTCACTCCAGTACACTGGAATAGAGATAAAAACGCTCCATTCCTTGGAATCATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314556" ref_strand="+" ref_description="SGN-E314556 [cTOA-20-K21]">
      <seq>tttcagcagctctcactctttctctctctagaaccagtggtctcaagcggtcactccattttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11686" stop="8388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11386" g_stop="11027" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="495" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8688" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="571" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E314556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11386" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCAGCTCTCACTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGA</genome_strand>
        <mrna_strand>TTTCAGCAGCTCTCACTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334611" ref_strand="+" ref_description="SGN-E334611 [cTOD-23-E4]">
      <seq>ttttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11628" stop="8392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11328" g_stop="11027" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="437" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8692" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="509" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E334611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11328" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCA</genome_strand>
        <mrna_strand>TTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334598" ref_strand="+" ref_description="SGN-E334598 [cTOD-23-A4]">
      <seq>ttttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggacaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctatggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggtgttacgaaatggcgacaccttttcacttgccactcactgctgctcacgtggggacatacttcccgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11628" stop="10725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11328" g_stop="11027" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E334598" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11328" e_stop="11027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG</genome_strand>
        <mrna_strand>TTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGACAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTATGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTGTTACGAAATGGCGACACCTTTTCACTTGCCACTCACTGCTGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347299" ref_strand="+" ref_description="SGN-E347299 [cTOF-33-E11]">
      <seq>gaaagtttagcgcaagcatttcaagaatatggaactgttgttggtgctagggtactgtatgatggtgagaccgggagatctcgtggctacggttttgtgagctttgagactagagaagaaatggagaatgctcttaacaatctcaatggagtggaattggatggaagggcattgcgagttagcttagcacaagggaagaaacaataagatgggacaaaattctttgtatattagttgtataagttgaaatttgccatctacatatgaacaattttagttcatggattaagatggctaaaaaggcttttactaggtcaaaaggagatgtaactatttgtattacatcacacatacaatgagctttcttttttcttcttcttctctttcctttattttatgatttagagagagaatgtaattgtttctatcatattttagaaaactattgagtcatttagtacaagcaacttcactagataatgcttgggacctatttcttgtagaaatatactaagtaaataggaatatattttcaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="13777" stop="12451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13477" g_stop="13325" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13136" g_stop="12741" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="549" r_length="396" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E347299" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13477" e_stop="13325"/>
          <exon e_start="13136" e_stop="12741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTGGTATGCATTTCTTGAACTCTCTTTTTCAAATCAGTTTGAGTGCATCTCACGTGAATGCATAAATATTGTATATCATAAGTGATATAATTGCATAAATATTGTATATCGTTGATACACGAAACTTCAATTTCGTGAGAAAAATGAAATAACTACTTACAATTTTACCCTTTTGTATATGTCTTTATCAGGAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTAAATAGGAATATATTTTCAATTATGGAGCCTAA</genome_strand>
        <mrna_strand>GAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG............................................................................................................................................................................................GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTAAATAGGAATATATTTTCAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347448" ref_strand="+" ref_description="SGN-E347448 [cTOF-33-F11]">
      <seq>gaaagtttagcgcaagcatttcaagaatatggaactgttgttggtgctagggtactgtatgatggtgagaccgggagatctcgtggctacggttttgtgagctttgagactagagaagaaatggagaatgctcttaacaatctcaatggagtggaattggatggaagggcattgcgagttagcttagcacaagggaagaaacaataagatgggacaaaattctttgtatattagttgtataagttgaaatttgccatctacatatgaacaattttagttcatggattaagatggctaaaaaggcttttactaggtcaaaaggagatgtaactatttgtattacatcacacatacaatgagctttcttttttcttcttcttctctttcctttattttatgatttagagagagaatgtaattgtttctatcatattttagaaaactattgagtcatttagtacaagcaacttcactagataatgcttgggacctatttcttgtagaaatatactaagtcaataggaatatattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="13777" stop="12456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13477" g_stop="13325" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13136" g_stop="12756" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="534" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E347448" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13477" e_stop="13325"/>
          <exon e_start="13136" e_stop="12756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTGGTATGCATTTCTTGAACTCTCTTTTTCAAATCAGTTTGAGTGCATCTCACGTGAATGCATAAATATTGTATATCATAAGTGATATAATTGCATAAATATTGTATATCGTTGATACACGAAACTTCAATTTCGTGAGAAAAATGAAATAACTACTTACAATTTTACCCTTTTGTATATGTCTTTATCAGGAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTAAATAGGAATATATTTTC</genome_strand>
        <mrna_strand>GAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG............................................................................................................................................................................................GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTCAATAGGAATATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349021" ref_strand="+" ref_description="SGN-E349021 [cTOF-29-D14]">
      <seq>ttggtgctagggtactgtatgatggtgagaccgggagatctcgtggctacggttttgtgagctttgagactagagaagaaatggagaatgctcttaacaatctcaatggagtggaattggatggaagggcattgcgagttagcttagcacaagggaagaaacaataagatgggacaaaattctttgtatattagttgtataagttgaaatttgccatctacatatgaacaattttagttcatggattaagatggctaaaaaggcttttactaggtcaaaaggagatgtaactatttgtattacatcacacatacaatgagctttcttttttcttcttcttctctttcctttattttatgatttagagagagaatgtaattgtttctatcatattttagaaaactattgagtcatttagtacaagcaacttcactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="13737" stop="12510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13437" g_stop="13325" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13136" g_stop="12806" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="444" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E349021" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13437" e_stop="13325"/>
          <exon e_start="13136" e_stop="12806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTGGTATGCATTTCTTGAACTCTCTTTTTCAAATCAGTTTGAGTGCATCTCACGTGAATGCATAAATATTGTATATCATAAGTGATATAATTGCATAAATATTGTATATCGTTGATACACGAAACTTCAATTTCGTGAGAAAAATGAAATAACTACTTACAATTTTACCCTTTTGTATATGTCTTTATCAGGAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCT</genome_strand>
        <mrna_strand>TTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG............................................................................................................................................................................................GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E488010" ref_strand="-" ref_description="SGN-E488010 [cSTE-27-O21]">
      <seq>atgggagtagtgaaagtgaaggtgttaatactaagcttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgagcttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcttttgtgacaatgagttctcttgaagattgcaagacagtcgtcgaaaatctagacggaagagagtatggtggcagaaccttaagggtgaatttctcagacaagcctaaaccaaaagaacccctttaccctgaaacagaacacaagctcttcgttggtaatttggcgtggtcagtctcatctgaaagtttggcacaagcatttcaagaatatggagctgttgttggagctagggtactgtatgatggtgagaccgggagatcacgtggctacggttttgtgagctttgagactagagaagaaatggagaatgctcttaacaatctcaatggagtggaattggatggaagggcattgcgagttagcttagcagaagggaagaaacaataagatgggacaagattctttgtatattagttgtaaaagttgaaatttgccatctatagaagaacaattttagttcatggattaagatggctaaaaaggctttaactaggtcaaaagaagatgtaactatttgaattacatcccccatacattgagctttcttttttttgttctctttccttcattttgtgatttagagagagatgtaattgttcctttcatcatattttagaaaactaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15297" stop="12545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="14876" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="223" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.730" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13325" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="496" r_length="273" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13136" g_stop="12859" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="769" r_length="273" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="805"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E488010" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E488010" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13325"/>
          <exon e_start="13136" e_stop="12859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTGGTATGCATTTCTTGAACTCTCTTTTTCAAATCAGTTTGAGTGCATCTCACGTGAATGCATAAATATTGTATATCATAAGTGATATAATTGCATAAATATTGTATATCGTTGATACACGAAACTTCAATTTCGTGAGAAAAATGAAATAACTACTTACAATTTTACCCTTTTGTATATGTCTTTATCAGGAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCAT</genome_strand>
        <mrna_strand>ATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGC-TTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAGCTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCTTTTGTGACAATGAGTTCTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGACGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCTTAAGGGTGAATTTCTCAGACAAGCCTAAACCAAAAGAACCCCTTTACCCTGAAACAGAACACAAGCTCTTCGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAGCTGTTGTTGGAGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCACGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG............................................................................................................................................................................................GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCAGAAGGGAAGAAACAATAAGATGGGACAAGATTCTTTGTATATTAGTTGTAAAAGTTGAAATTTGCCATCTATAGAAGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTAACTAGGTCAAAAGAAGATGTAACTATTTGAATTACATCCCCCATACATTGAGCTTTC--TTTT-TT-TTGTTCTCTTTCCTTCATTTTGTGATTTAGAGAGAG-ATGTAATTGTTCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403947" ref_strand="-" ref_description="SGN-E403947 [PPC-12-O23]">
      <seq>aaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgtcaaagactatgctagtcctgagcttgtgagggttctttatgatagggacacaggtaaaagcagaggatttgcttttgtgacaatgagttctcttgaagattgcaagacagtcgtcgaaaatctagacggaagagagtatggtggcagaaccttaagggtgaatttctcagacaagcctaaaccaaaagaacccctttaccctgaaacagaacacaagctcttcgttggtaatttggcgtggtcagtctcatctgaaagtttggcacaagcatttcaagaatatggagctgttgttggagctagggtactgtatgatggtgagaccgggagatcacgtggctacggttttgtgagctttgagactagagaagaaatggagaatgctcttaacaatctcaatggagtggaattggatggaagggcattgcgagttagcttagcagaagggaagaaacaataagatgggacaagattctttgtatattagttgtaaaagttgaaatttgccatctatagaagaacaattttagttcatggattaagatggctaaaaaggctttaactaggtcaaaagaagatgtaactatttgaattacatcccccatacattgagctttcttttttttgttctctttccttcattttgtgatttagagagagatgtaattgttcctttcatcatattttagaaaactaaaaaaaaaaaaaaaaaactccagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15285" stop="12545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14985" g_stop="14876" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="212" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.730" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13325" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="485" r_length="273" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13136" g_stop="12859" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="758" r_length="273" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="793"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E403947" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403947" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14985" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13325"/>
          <exon e_start="13136" e_stop="12859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTGGTATGCATTTCTTGAACTCTCTTTTTCAAATCAGTTTGAGTGCATCTCACGTGAATGCATAAATATTGTATATCATAAGTGATATAATTGCATAAATATTGTATATCGTTGATACACGAAACTTCAATTTCGTGAGAAAAATGAAATAACTACTTACAATTTTACCCTTTTGTATATGTCTTTATCAGGAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCAT</genome_strand>
        <mrna_strand>AAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTCAAAGACTATGCTAGTCCTGAGCTTGTGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCTTTTGTGACAATGAGTTCTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGACGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCTTAAGGGTGAATTTCTCAGACAAGCCTAAACCAAAAGAACCCCTTTACCCTGAAACAGAACACAAGCTCTTCGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAGCTGTTGTTGGAGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCACGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG............................................................................................................................................................................................GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCAGAAGGGAAGAAACAATAAGATGGGACAAGATTCTTTGTATATTAGTTGTAAAAGTTGAAATTTGCCATCTATAGAAGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTAACTAGGTCAAAAGAAGATGTAACTATTTGAATTACATCCCCCATACATTGAGCTTTC--TTTT-TT-TTGTTCTCTTTCCTTCATTTTGTGATTTAGAGAGAG-ATGTAATTGTTCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433775" ref_strand="-" ref_description="SGN-E433775 [STM-59-A11]">
      <seq>aatttgccgtatctttgtgatagtgcacaacttgctgggatgtttcaagactatgctagtcctgagcttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcttttgtgacaatgagttctcttgaagattgcaagacagtcgtcgaaaatctagacggaagagagtatggtggcagaaccttaagggtgaatttctcagacaagcctaaaccaaaagaacccctttaccctgaaacagaacacaagctcttcgttggtaatttggcgtggtcagtctcatctgaaagtttggcacaagcatttcaagaatatggagctgttgttggagctagggtactgtatgatggtgagaccgggagatcacgtggctacggttttgtgagctttgagactagagaagaaatggagaatgctcttaacaatctcaatggagtggaattggatggaagggcattgcgagttagcttagcagaagggaagaaacaataagatgggacaagattctttgtatattagttgtaaaagttgaaatttgccatctatagaagaacaattttagttcatggattaagatggctaaaaaggctttaactaggtcaaaagaagatgtaactatttgaattacatcccccatacattgagctttcttttttttgttctctttccttcattttgtgatttagagagagatgtaattgttcctttcatcatattttagaaaactaaaaaaaaaaaaaaaaaactccagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15250" stop="12545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14950" g_stop="14876" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="177" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.730" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13325" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="450" r_length="273" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13136" g_stop="12859" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="723" r_length="273" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="758"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E433775" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14950" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13325"/>
          <exon e_start="13136" e_stop="12859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTGGTATGCATTTCTTGAACTCTCTTTTTCAAATCAGTTTGAGTGCATCTCACGTGAATGCATAAATATTGTATATCATAAGTGATATAATTGCATAAATATTGTATATCGTTGATACACGAAACTTCAATTTCGTGAGAAAAATGAAATAACTACTTACAATTTTACCCTTTTGTATATGTCTTTATCAGGAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCAT</genome_strand>
        <mrna_strand>AATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATGTTTCAAGACTATGCTAGTCCTGAGCTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCTTTTGTGACAATGAGTTCTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGACGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCTTAAGGGTGAATTTCTCAGACAAGCCTAAACCAAAAGAACCCCTTTACCCTGAAACAGAACACAAGCTCTTCGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAGCTGTTGTTGGAGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCACGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG............................................................................................................................................................................................GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCAGAAGGGAAGAAACAATAAGATGGGACAAGATTCTTTGTATATTAGTTGTAAAAGTTGAAATTTGCCATCTATAGAAGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTAACTAGGTCAAAAGAAGATGTAACTATTTGAATTACATCCCCCATACATTGAGCTTTC--TTTT-TT-TTGTTCTCTTTCCTTCATTTTGTGATTTAGAGAGAG-ATGTAATTGTTCCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688332" ref_strand="+" ref_description="SGN-E688332 [t3_tus_11_o22]">
      <seq>ctccaaatctaactttaatttcatcgtcggtaagtgaactgacgtcgatttacaagaagtggagggtattgcccaggctgtcagctgcggtggcgcaagaggaggcggaagcggcggtgacggaggaggaggtgccggcgccggcggtggatgaggaggagaaggtaggagagggttccgatgggagtagtgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgaacttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcatttgtgacaatgagtactcttgaagattgcaagacagtcgtcgaaaatctagatggaagagagtatggtggcagaaccctaagggtgaatttctcggataagcctaaaccaaaagaaccactttaccccgaaacagaacacaaactctttgttggtaatttggcgtggtcagtctcatctgaaagtttagcgcaagcatttcaagaatatggaactgttgttggtgctagggtactgtatgatggtgagaccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15477" stop="13103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15177" g_stop="14876" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="404" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13403" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="599" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E688332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15177" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGG</genome_strand>
        <mrna_strand>CTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550669" ref_strand="+" ref_description="SGN-E550669 [TUS-11-O22]">
      <seq>gctccaaatctaactttaatttcatcgtcggtaagtgaactgacgtcgatttacaagaagtggagggtattgcccaggctgtcagctgcggtggcgcaagaggaggcggaagcggcggtgacggaggaggaggtgccggcgccggcggtggatgaggaggagaaggtaggagagggttccgatgggagtagtgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgaacttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcatttgtgacaatgagtactcttgaagattgcaagacagtcgtcgaaaatctagatggaagagagtatggtggcagaaccctaagggtgaatttctcggataagcctaaaccaaaagaaccactttaccccgaaacagaacacaaactctttgttggtaatttggcgtggtcagtctcatctgaaagtttagcgcaagcatttcaagaatatggaactgttgttggtgctagggtactgtatgatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15477" stop="13111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15178" g_stop="14876" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="405" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13411" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="592" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E550669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15178" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTG</genome_strand>
        <mrna_strand>GCTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725829" ref_strand="+" ref_description="SGN-E725829 [LA05DF06]">
      <seq>taaaatttcatcagctagaactccaaatctaactttaatttcatcgtcggtaagtgaactgacgtcgatttacaagaagtggagggtattgcccaggctgtcagctgcggtggcgcaagaggaggcggaagcggcggtgacggaggaggaggtgccggcgccggcggtggatgaggaggagaaggtaggagagggttccgatgggagtagtgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgaacttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcatttgtgacaatgagtactcttgaagaatgcaagacagtcgtcgaaaatctagatggaagagagtatggtggcagaacccttagggtgaacttctcggattagcctaaaccaaagaaccaccttaccccgaacagaacacaacttcttgttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15497" stop="13202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15197" g_stop="14876" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="424" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.730" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13502" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="517" r_length="93" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E725829" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15197" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGT</genome_strand>
        <mrna_strand>TAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGAATGCAAGACAGTCGTCGAAAATCTAGATGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCCTTAGGGTGAACTTCTCGGATTAGCCTAAACC-AAAGAACCACCTTACCCCG-AACAGAACAC-AACTTCTTGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248259" ref_strand="+" ref_description="SGN-E248259 [cLEF-55-O23]">
      <seq>tgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgaacttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcatttgtgacaatgagtactcttgaagattgcaagacagtcgtcgaaaatctaaatggaagagagtatggtggcctaaccctaagggtgaatttctcggataaacctaaaccaaaaaaaccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15287" stop="13234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14987" g_stop="14876" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="214" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.730" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13534" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="278" r_length="64" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E248259" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14987" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTT</genome_strand>
        <mrna_strand>TGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAAATGGAAGA...............................................................................................................GAGTATGGTGGCCTAACCCTAAGGGTGAATTTCTCGGATAAACCTAAACCAAAAAAACCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400521" ref_strand="+" ref_description="SGN-E400521 [PPC-1-A18]">
      <seq>gaggtgccggcgccggcggtggatgaggaggaggagaaggtaggagacggttccgatgggagtagtgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgagcttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcttttgtgacactgagttctcttgaagattgcatgacagtcggcgaaaatctagacggaagagagtatggtggcagaaccttaagggtgaatttctcagacaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15352" stop="13253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15049" g_stop="14876" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="279" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="0.92"/>
            <acceptor a_prob="0.730" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13553" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="324" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E400521" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15049" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGCCGGCGCCGGCGGTGGAT---GAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCT</genome_strand>
        <mrna_strand>GAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGGAGAAGGTAGGAGACGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAGCTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCTTTTGTGACACTGAGTTCTCTTGAAGATTGCATGACAGTCGGCGAAAATCTAGACGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCTTAAGGGTGAATTTCTCAGACAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481131" ref_strand="+" ref_description="SGN-E481131 [cSTD-16-N11]">
      <seq>caaaattgaaattccggcgaaatcatggcggccgcagctgccacagcagtagcttcttcgttttcccgtctgcattgtatacgttctaaattaaattggactaattccgatcatctacttaaaatttcatcaactagaactccaaatctaactttaatttcatcgtcgtcaagtgaagtgacgtcgatttacaagaagtggaggatattgccgaggctagcagctgcggtggtgcaagaggaggtggaagcggcggtgacggaggaggaggaagaggtgccggcgccggcggtggatgaggaggaggagaaggtaggagagggttccgatgggagtagtgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgagcttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcttttgtgacaatgagttctcttgaagattgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15615" stop="13436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15316" g_stop="14876" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13736" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="525" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E481131" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15316" e_stop="14876"/>
          <exon e_start="13810" e_stop="13736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAATAGCTTCTTCGTTTTCCAGTCTTCATTCTATACGTACTAAATCAAATTTGACTAATTCCGATCATCTACTTAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGAC---GGAGGA-G--GAGGTGCCGGCGCCGGCGGTGGAT---GAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAG</genome_strand>
        <mrna_strand>CAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAGTAGCTTCTTCGTTTTCCCGTCTGCATTGTATACGTTCTAAATTAAATTGGACTAATTCCGATCATCTACTTAAAATTTCATCAACTAGAACTCCAAATCTAACTTTAATTTCATCGTCGTCAAGTGAAGTGACGTCGATTTACAAGAAGTGGAGGATATTGCCGAGGCTAGCAGCTGCGGTGGTGCAAGAGGAGGTGGAAGCGGCGGTGACGGAGGAGGAGGAAGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAGCTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCTTTTGTGACAATGAGTTCTCTTGAAGATTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290487" ref_strand="+" ref_description="SGN-E290487 [cLES-20-C11]">
      <seq>tccgatcaaaaattgaaattccggcgaaatcatggcggccgcagctgccacagcaatagcttcttcgttttccagtcttcattctatacgtactaaatcaaatttgactaattccgatcatctacttaaaatttcatcagctagaactccaaatctaactttaatttcatcgtcggtaagtgaactgacgtcgatttacaagaagtggagggtattgcccaggctgtcagctgcggtggcgcaagaggaggcggaagcggcggtgacggaggaggaggtgccggcgccggcggtggatgaggaggagaaggtaggagagggttccgatgggagtagtgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgaacttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcatttgtgacaatgagtactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15623" stop="13449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15323" g_stop="14876" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13749" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="510" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E290487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15323" e_stop="14876"/>
          <exon e_start="13810" e_stop="13749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCAAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAATAGCTTCTTCGTTTTCCAGTCTTCATTCTATACGTACTAAATCAAATTTGACTAATTCCGATCATCTACTTAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCT</genome_strand>
        <mrna_strand>TCCGATCAAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAATAGCTTCTTCGTTTTCCAGTCTTCATTCTATACGTACTAAATCAAATTTGACTAATTCCGATCATCTACTTAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213906" ref_strand="+" ref_description="SGN-E213906 [cLEC-76-N22]">
      <seq>cactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatcagacttgcacgtatctgaattgaagagtcatactaaggggtttgagttttagtagtttttatacttattttgttgttgttgttgtagagtgtgtgttctttccaatttctatataataataatgtcatggaaagaactttgaataagataagacaagctttagttatgaaaagtttgtactaaacataaaatgtgttgntcaaatatatatgatatgattagatttatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17705" stop="15770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17405" g_stop="17245" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16070" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="708" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E213906" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17405" e_stop="17245"/>
          <exon e_start="16616" e_stop="16070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGTGTTGTTCAAATATATATGATATGATTAGATTTATATA</genome_strand>
        <mrna_strand>CACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGTGTTGNTCAAATATATATGATATGATTAGATTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374735" ref_strand="+" ref_description="SGN-E374735 [TUS-14-N8](-)">
      <seq>ggttgtgtttgcaaggctaaaactaggtcccccccaaaaggtgactatgttttaaaggatgaagaacccaatgaaggaaaaaaacatcccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatttacgcttaaatgatgaaaaaaaaatcagacttgcacgtatttgaattgaaaagtcatactaaggggtttgagttttagtagtttttatacttattttgttgttgttgttgtaaagggggggttctttccaatttttatataataataatgtcatggaaaaaactttgaataaaataagacaagctttagttatgaaaagtttgtactaaacataaaatgggttgttcaaatatatatgatatgattagattttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="16767" stop="15770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16467" g_stop="16075" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="429"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E374735" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16467" e_stop="16075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGTGTTGTTCAAATATATATGATATGATTAGATTT</genome_strand>
        <mrna_strand>GGTTGTGTTTGCAAGGCTAAAACTAGGTCCCCCCCAAAAGGTGACTATGTTTTAAAGGATGAAGAACCCAATGAAGGAAAAAAACATCCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATTTACGCTTAAATGATGAAAAAAAAATCAGACTTGCACGTATTTGAATTGAAAAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAAAGGGGGGGTTCTTTCCAATTTTTATATAATAATAATGTCATGGAAAAAACTTTGAATAAAATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGGGTTGTTCAAATATATATGATATGATTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429919" ref_strand="-" ref_description="SGN-E429919 [STM-52-H22]">
      <seq>aaattaccactatgggtgtcactacctatacacatgaagccacaagcacagtgtcccctactaggttgttcaaagctttggttgttgatgctgacaatcttatccctaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcatcaagaagatgaactttgttgaaggtggtccaataaagtacttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacctatgatatcaaatttgaagctgctggaaatggaggttgtgtttgcaagacaaaaactgagtaccacacaaaaggtgactatgttttaaaggaagaagaacacaatgaaggcaagaaacaagccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttctgtctacgctaagtgatgaaaaaagaatcagacatgcacgtacttagttgaagagttgtaccaaggggtttgagttttaggtttttttttttgtgtgtgtgttctttccaatttctatgtatgtcatggaaagaactttgaataagatagacaagctttacttatgaaaagtttgtaccaaacataaaatgttgttcaatatatatgatatgatgcacaaggcttaatttctaaaaaaaaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17726" stop="15782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17424" g_stop="17245" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16084" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="678" r_length="498" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E429919" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429919" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17424" e_stop="17245"/>
          <exon e_start="16616" e_stop="16084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGTGTTGTTCAAATATATATGATATG</genome_strand>
        <mrna_strand>AAATTACCACTATGGGTGTCACTACCTATACACATGAAGCCACAAGCACAGTGTCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATGCTGACAATCTTATCCCTAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATCAAGAAGATGAACTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTACTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCTATGATATCAAATTTGAAGCTGCTGGAAATGGAGGTTGTGTTTGCAAGACAAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGAAGAAGAACACAATGAAGGCAAGAAACAAGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCTGTCTACGC-TAAGTGATGAAAAAAGAATCAGACATGCACGTA-CTTAGTTGAAGAGTTGTACCAAGGGGTTTGAGTTTTAG--G-------------TTT-TT-TT-TT-TTGT---GTGTGTGTTCTTTCCAATTTC----T-AT-GT-ATGTCATGGAAAGAACTTTGAATAAGAT-AGACAAGCTTTACTTATGAAAAGTTTGTACCAAACATAAAA--TGTTGTTC-AATATATATGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722221" ref_strand="+" ref_description="SGN-E722221 [FC16CE01]">
      <seq>gaactcaaaactagctagcacattaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaaaattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatcagacttgcacgtatctgaattgaagagtcatactaaggggtttgagttttagtagtttttatacttattttgttgttgttgttgtagagtgtgtgttctttccaatttctatataataataatgtcatggaaagaactttgaataagataagacaagctttagttatgaaaagtttgtactaaacntnnnnnaaannaanaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17797" stop="15814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17498" g_stop="17245" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16109" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="762" r_length="508" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="794"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E722221" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17498" e_stop="17245"/>
          <exon e_start="16616" e_stop="16109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAAAACTAGCTAGCACATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAAT</genome_strand>
        <mrna_strand>GAACTCAAAACTAGCTAGCACATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAAATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACNTNNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747675" ref_strand="+" ref_description="SGN-E747675 [GI|62751098]">
      <seq>gaactcaaaactagctagcacattaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatcagacttgcacgtatctgaattgaagagtcatactaaggggtttgagttttagtagtttttatacttattttgttgttgttgttgtagagtgtgtgttctttccaatttctatataataataatgtcatggaaaagaactttgaataagataagacaagctttagttatgaaaagtttgtactaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17797" stop="15814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17498" g_stop="17245" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16114" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="758" r_length="504" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E747675" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17498" e_stop="17245"/>
          <exon e_start="16616" e_stop="16114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAAAACTAGCTAGCACATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGG-AAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACAT</genome_strand>
        <mrna_strand>GAACTCAAAACTAGCTAGCACATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349983" ref_strand="+" ref_description="SGN-E349983 [cTOS-4-I5]">
      <seq>attaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatcagacttgcacgtatctgaattgaagagtcatactaaggggtttgagttttagtagtttttatacttattttgttgttgttgttgtagagtgtgtgttcttttcaatttctatataataataatgtcatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17777" stop="15869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17477" g_stop="17245" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16169" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="681" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E349983" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17477" e_stop="17245"/>
          <exon e_start="16616" e_stop="16169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAA</genome_strand>
        <mrna_strand>ATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTTCAATTTCTATATAATAATAATGTCATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722088" ref_strand="+" ref_description="SGN-E722088 [FC16AF10]">
      <seq>acttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaaaaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatcagacttgcacgtatctgaattgaagagtcatactaaggggtttgagttttagtagtttttatacttattttgttgttgttgttgaagagtgtgtgttctttccaatttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17768" stop="15889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17468" g_stop="17245" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16189" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="652" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E722088" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17468" e_stop="17245"/>
          <exon e_start="16616" e_stop="16189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTAT</genome_strand>
        <mrna_strand>ACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAAAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGAAGAGTGTGTGTTCTTTCCAATTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357457" ref_strand="+" ref_description="SGN-E357457 [cTOS-23-I7]">
      <seq>attaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttataaaaagggatgttcttggagacaaattggaatccattacccatgatgtcaaattttaacctgctggaaatggaaggtgtgtttgccagaataaaactgaataccacaccaaaagggactatggttttaaggatgaagaacaccatgaaggaaaaaaacctgccatggaacttttccagggtggccaagaatacctcctccctaatccttccatctacgcttaaatgatgaaaaaagaatccgaattgcacgtatctgaattgaagaatcatactaagggggttgaggtttaataggttttatacctaatttggntgtggtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17777" stop="15929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17477" g_stop="17245" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16217" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="633" r_length="400" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E357457" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17477" e_stop="17245"/>
          <exon e_start="16616" e_stop="16217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTG</genome_strand>
        <mrna_strand>ATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAAAAAGGGATGTTCTTGGAGACAAATTGGAATCCATTACCCATGATGTCAAATTTTAACCTGCTGGAAATGGAAGGTGTGTTTGCCAGAATAAAACTGAATACCACACCAAAAGGGACTATGGTTTTAAGGATGAAGAACACCATGAAGGAAAAAAACCTGCCATGGAACTTTTCCAGGGTGGCCAAGAATACCTCCTCCCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCCGAATTGCACGTATCTGAATTGAAGAATCATACTAAGGGGGTTGAGGTTTAATAGGTTTTATACCTAATTTGGNTGTGGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213289" ref_strand="+" ref_description="SGN-E213289 [cLEC-71-C12]">
      <seq>agacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatcagacttgcacgtatctgaattgaagagtcatactaaggggtttgagttttagtagtttttatacttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17687" stop="15930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17387" g_stop="17245" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16230" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="530" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E213289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17387" e_stop="17245"/>
          <exon e_start="16616" e_stop="16230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTT</genome_strand>
        <mrna_strand>AGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576016" ref_strand="+" ref_description="SGN-E576016 [59165]">
      <seq>taatttcacttcttatatatattctcttttttattactaaaaaaaaagttgaaagaaaattaacactatgggtgtcactacctatacacatgaagccacaagcacagtgtcccctactaggttgttcaaagctttggttgttgatgctgacaatcttatccctaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcatcaagaagatgaactttgttgaaggtggtccaataaagtacttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacctatgatatcaaatttgaagctgctggaaatggaggttgtgtttgcaagacaaaaactgagtaccacacaaaaggtgactatgttttaaaggaagaagaacacaatgaaggcaagaaacaagccatggaacttttcaagggctgtcgaagattacctcctcgctaatccttctgtctacgctaagtgatgaaaaaagagtcagacatgcacgtacctagttgaagagttgtaccaagggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17775" stop="15957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17421" g_stop="17245" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="236" r_length="177" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16257" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="594" r_length="358" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E576016" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17421" e_stop="17245"/>
          <exon e_start="16616" e_stop="16257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAA-GGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTG</genome_strand>
        <mrna_strand>TTAACACTATGGGTGTCACTACCTATACACATGAAGCCACAAGCACAGTGTCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATGCTGACAATCTTATCCCTAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATCAAGAAGATGAACTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTACTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCTATGATATCAAATTTGAAGCTGCTGGAAATGGAGGTTGTGTTTGCAAGACAAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGAAGAAGAACACAATGAAGGCAAGAAACAAGCCATGGAACTTTTCAAGGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCTGTCTACGC-TAAGTGATGAAAAAAGAGTCAGACATGCACGTACCT-AGTTGAAGAGTTGTACCAA-GGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458228" ref_strand="+" ref_description="SGN-E458228 [cPRO-5-E15]">
      <seq>ttcacttcttatatatattctcttttttattactaaaaaaaaagttgaaagaaaattaacactatgggtgtcactacctatacacatgaagccacaagcacagtgtcccctactatgttgttcaaagctttggttgttgatgctgacaatcttatccctaaattgatgccaaatgttaataatgttgagactgagggagatggaaccatcaagaatatgaactttgttgaaggtggtccaataaagtacttgaagcactagattcatgccattgatgacaagaatttggtaacaaaatattcacttatacaaggtgatgttcttggagacaaattggaatcaattacctatgatatcaaatttgaagctgctggaaatggaggttgtgtttgcaatacaaaaactgagtaccacacaaaaggtgactatgttttacaggaagaagaactcaatggatgcaagaaacaagccatggaacttttgcaggctgtcgaagattacctcctcgctaatccttctgtctacgctaagtgatgaaagaataatcctacatgcacgtacctagttgaagagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17771" stop="15973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17421" g_stop="17245" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="232" r_length="177" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16272" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="575" r_length="343" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E458228" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17421" e_stop="17245"/>
          <exon e_start="16616" e_stop="16272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTC</genome_strand>
        <mrna_strand>TTAACACTATGGGTGTCACTACCTATACACATGAAGCCACAAGCACAGTGTCCCCTACTATGTTGTTCAAAGCTTTGGTTGTTGATGCTGACAATCTTATCCCTAAATTGATGCCAAATGTTAATAATGTTGAGACTGAGGGAGATGGAACCATCAAGAATATGAACTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTACTTGAAGCACTAGATTCATGCCATTGATGACAAGAATTTGGTAACAAAATATTCACTTATACAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCTATGATATCAAATTTGAAGCTGCTGGAAATGGAGGTTGTGTTTGCAATACAAAAACTGAGTACCACACAAAAGGTGACTATGTTTTACAGGAAGAAGAACTCAATGGATGCAAGAAACAAGCCATGGAACTTTTGCAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCTGTCTACGC-TAAGTGATGAAAGAATAATCCTACATGCACGTACCT-AGTTGAAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374736" ref_strand="+" ref_description="SGN-E374736 [TUS-14-N8]">
      <seq>ttaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaacagaattagacttgcacgtatctgaattgaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17776" stop="15973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17476" g_stop="17245" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16273" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="576" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E374736" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17476" e_stop="17245"/>
          <exon e_start="16616" e_stop="16273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGT</genome_strand>
        <mrna_strand>TTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAACAGAATTAGACTTGCACGTATCTGAATTGAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336266" ref_strand="+" ref_description="SGN-E336266 [cTOE-10-J18]">
      <seq>ttaatttcacttcttatatatcctttattttactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17776" stop="16000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17476" g_stop="17245" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16300" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="546" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E336266" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17476" e_stop="17245"/>
          <exon e_start="16616" e_stop="16300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCA</genome_strand>
        <mrna_strand>TTAATTTCACTTCTTATATATCCTTTA--TT-TTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202201" ref_strand="+" ref_description="SGN-E202201 [cLEC-7-D22]">
      <seq>ttaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17776" stop="16068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17476" g_stop="17245" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16368" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="481" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E202201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17476" e_stop="17245"/>
          <exon e_start="16616" e_stop="16368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTT</genome_strand>
        <mrna_strand>TTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201980" ref_strand="+" ref_description="SGN-E201980 [cLEC-7-I4]">
      <seq>ttaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17776" stop="16170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17476" g_stop="17245" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16470" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="379" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E201980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17476" e_stop="17245"/>
          <exon e_start="16616" e_stop="16470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATG</genome_strand>
        <mrna_strand>TTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201174" ref_strand="+" ref_description="SGN-E201174 [cLEC-10-A21]">
      <seq>caacattttatatatcctcttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19232" stop="20546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19532" g_stop="19741" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20246" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="407" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E201174" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19532" e_stop="19741"/>
          <exon e_start="20049" e_stop="20246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATG</genome_strand>
        <mrna_strand>CAACATTTTATATATCCTC-TTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351135" ref_strand="+" ref_description="SGN-E351135 [cTOS-6-L24]">
      <seq>aacattttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttcccagtttatcattgggaattaagaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaatattttacttttcgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19233" stop="20913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19533" g_stop="19741" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20614" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="774" r_length="565" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E351135" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19533" e_stop="19741"/>
          <exon e_start="20049" e_stop="20614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAAT</genome_strand>
        <mrna_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCCAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGT-AAAAAATATTTTACTTTTCGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350162" ref_strand="+" ref_description="SGN-E350162 [cTOS-4-M15]">
      <seq>aacattttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatggtatagtgctttttgttgaattgtgtgttctttttccaagtttatcattgggaattaagaactcttaataatgtagcaacctttaatttttgcttatcaatacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19233" stop="20885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19533" g_stop="19741" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20585" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="746" r_length="537" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E350162" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19533" e_stop="19741"/>
          <exon e_start="20049" e_stop="20585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAA-TTTTGCTTATCAAATACTTAAT</genome_strand>
        <mrna_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGGTATAGTGCTTTTTGTTGAATTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTTGCTTATC-AATACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201876" ref_strand="+" ref_description="SGN-E201876 [cLEC-18-A23]">
      <seq>aacattttatatatcctctttttttttgtctaataacatgatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19233" stop="20766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19533" g_stop="19741" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20466" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="627" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E201876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19533" e_stop="19741"/>
          <exon e_start="20049" e_stop="20466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGT</genome_strand>
        <mrna_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATGATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355302" ref_strand="+" ref_description="SGN-E355302 [cTOS-18-K3]">
      <seq>aacattttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19233" stop="20719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19533" g_stop="19741" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20419" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="580" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E355302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19533" e_stop="19741"/>
          <exon e_start="20049" e_stop="20419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACC</genome_strand>
        <mrna_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335520" ref_strand="+" ref_description="SGN-E335520 [cTOE-2-O4]">
      <seq>aacattttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19233" stop="20657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19533" g_stop="19741" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20357" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="518" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E335520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19533" e_stop="19741"/>
          <exon e_start="20049" e_stop="20357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAAT</genome_strand>
        <mrna_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201390" ref_strand="+" ref_description="SGN-E201390 [cLEC-4-J11]">
      <seq>aacattttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19233" stop="20551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19533" g_stop="19741" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20251" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="412" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E201390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19533" e_stop="19741"/>
          <exon e_start="20049" e_stop="20251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTG</genome_strand>
        <mrna_strand>AACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249276" ref_strand="+" ref_description="SGN-E249276 [cLEF-50-J4]">
      <seq>acattttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19234" stop="20662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19534" g_stop="19741" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20362" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="522" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E249276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19534" e_stop="19741"/>
          <exon e_start="20049" e_stop="20362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAA</genome_strand>
        <mrna_strand>ACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201932" ref_strand="+" ref_description="SGN-E201932 [cLEC-7-G19]">
      <seq>ttttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19237" stop="20622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19537" g_stop="19741" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20322" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="479" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E201932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19537" e_stop="19741"/>
          <exon e_start="20049" e_stop="20322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCT</genome_strand>
        <mrna_strand>TTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202176" ref_strand="+" ref_description="SGN-E202176 [cLEC-7-H17]">
      <seq>ttttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19237" stop="20573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19537" g_stop="19741" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20273" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="430" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E202176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19537" e_stop="19741"/>
          <exon e_start="20049" e_stop="20273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAG</genome_strand>
        <mrna_strand>TTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337371" ref_strand="+" ref_description="SGN-E337371 [cTOE-18-F18]">
      <seq>ttttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19237" stop="20043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19537" g_stop="19741" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E337371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19537" e_stop="19741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG</genome_strand>
        <mrna_strand>TTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287331" ref_strand="+" ref_description="SGN-E287331 [cLES-15-J13]">
      <seq>tttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19238" stop="20535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19538" g_stop="19741" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20235" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="391" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E287331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19538" e_stop="19741"/>
          <exon e_start="20049" e_stop="20235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAA</genome_strand>
        <mrna_strand>TTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396243" ref_strand="+" ref_description="SGN-E396243 [TUS-41-A6]">
      <seq>tatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19240" stop="20795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19540" g_stop="19741" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20495" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="649" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E396243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19540" e_stop="19741"/>
          <exon e_start="20049" e_stop="20495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTG</genome_strand>
        <mrna_strand>TATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205473" ref_strand="+" ref_description="SGN-E205473 [cLEC-28-K13]">
      <seq>atatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19241" stop="20757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19541" g_stop="19741" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20457" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="610" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E205473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19541" e_stop="19741"/>
          <exon e_start="20049" e_stop="20457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTAT</genome_strand>
        <mrna_strand>ATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205154" ref_strand="+" ref_description="SGN-E205154 [cLEC-16-B13]">
      <seq>atatatactctttttttttgtctaataacatcatgggtgtgagtagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaagatgaagaacataatgaaggcaaaaaacaagccatggaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19241" stop="20597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19541" g_stop="19741" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20297" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="450" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E205154" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19541" e_stop="19741"/>
          <exon e_start="20049" e_stop="20297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTT</genome_strand>
        <mrna_strand>ATATATACTCTTTTTTTTTGTCTAATAACATCATGGGTGTGAGTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAAGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247633" ref_strand="+" ref_description="SGN-E247633 [cLEF-42-L10]">
      <seq>tatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19242" stop="20784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19542" g_stop="19741" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20484" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="636" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E247633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19542" e_stop="19741"/>
          <exon e_start="20049" e_stop="20484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGT</genome_strand>
        <mrna_strand>TATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335214" ref_strand="+" ref_description="SGN-E335214 [cTOE-1-E3]">
      <seq>tatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19242" stop="20771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19542" g_stop="19741" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20471" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="623" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E335214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19542" e_stop="19741"/>
          <exon e_start="20049" e_stop="20471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCA</genome_strand>
        <mrna_strand>TATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209402" ref_strand="+" ref_description="SGN-E209402 [cLEC-53-D21]">
      <seq>atatcctcttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19243" stop="20602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19543" g_stop="19741" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20302" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="452" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E209402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19543" e_stop="19741"/>
          <exon e_start="20049" e_stop="20302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAG</genome_strand>
        <mrna_strand>ATATCCTC-TTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390634" ref_strand="+" ref_description="SGN-E390634 [TUS-47-K4]">
      <seq>tcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19246" stop="20791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19546" g_stop="19741" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20491" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="639" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E390634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19546" e_stop="19741"/>
          <exon e_start="20049" e_stop="20491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTT</genome_strand>
        <mrna_strand>TCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284772" ref_strand="+" ref_description="SGN-E284772 [cLES-3-F15]">
      <seq>cctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19247" stop="20602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19547" g_stop="19741" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20302" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="449" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E284772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19547" e_stop="19741"/>
          <exon e_start="20049" e_stop="20302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAG</genome_strand>
        <mrna_strand>CCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336231" ref_strand="+" ref_description="SGN-E336231 [cTOE-10-L21]">
      <seq>ctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19248" stop="20425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19548" g_stop="19741" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20125" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="271" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E336231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19548" e_stop="19741"/>
          <exon e_start="20049" e_stop="20125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATT</genome_strand>
        <mrna_strand>CTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353445" ref_strand="+" ref_description="SGN-E353445 [cTOS-15-N4]">
      <seq>tttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19251" stop="20657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19551" g_stop="19741" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20357" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="500" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E353445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19551" e_stop="19741"/>
          <exon e_start="20049" e_stop="20357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAAT</genome_strand>
        <mrna_strand>TTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390870" ref_strand="+" ref_description="SGN-E390870 [TUS-47-K4](-)">
      <seq>ttttttttgtctaataacatcatgggggtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtttacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttccaagtttatcattgggaattaagaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaatattttacttttcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19252" stop="20919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19552" g_stop="19741" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20619" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="761" r_length="571" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E390870" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19552" e_stop="19741"/>
          <exon e_start="20049" e_stop="20619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAA</genome_strand>
        <mrna_strand>TTTTTTTTGTCTAATAACATCATGGGGGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTTTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285832" ref_strand="+" ref_description="SGN-E285832 [cLES-5-P19]">
      <seq>ttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgcttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19252" stop="20619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19552" g_stop="19741" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20319" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="461" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E285832" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19552" e_stop="19741"/>
          <exon e_start="20049" e_stop="20319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCT</genome_strand>
        <mrna_strand>TTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGCTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351007" ref_strand="+" ref_description="SGN-E351007 [cTOS-6-I9]">
      <seq>ttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19254" stop="20386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="19741" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20086" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="226" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E351007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="19741"/>
          <exon e_start="20049" e_stop="20086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTT</genome_strand>
        <mrna_strand>TTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624458" ref_strand="+" ref_description="SGN-E624458 [GI|169550]">
      <seq>acacacctcacaacattctcacacataacattttgtatatcctttttgtgtgttcaatatctctaataacatcatgggtgtcactagctatacacatgagaccacaacaccaattgcccctactaggttgttcaaagctttggttgttgattctgacaatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagcatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgaatccatttcctatgatctcaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtaccacacaaaaggtgattatgtgttgaaggatgaagaacacaatgaaggccaaaaacaaggcatggaacttttcaagattgttgaagcatacctcctcgccaatccttctgtctacgcttaagtgatgaaaaaagaatcaggcccacacttgaaatataacgtgttgtgacattatataataaagtatactctcattaaaaagtttaatcttttaaatgagatgatggtttgagtttccattaatgttataggtctttttgttgagttgtgtgttctttttccaagtttatcatgggaagaactcttaataatgtaagcaaccttaaattttgcttatcaaatacttatattaaaaaatgtattacttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19257" stop="20909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19561" g_stop="19741" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="242" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20609" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="791" r_length="549" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E624458" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19561" e_stop="19741"/>
          <exon e_start="20049" e_stop="20609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGT-AGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCG</genome_strand>
        <mrna_strand>TCTAATAACATCATGGGTGTCACTAGCTATACACATGAGACCACAACACCAATTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGACAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGCATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAATCCATTTCCTATGATCTCAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTACCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACACAATGAAGGCCAAAAACAAGGCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGCCAATCCTTCTGTCTACGCTTAAGTGATGAAAAAAGAATCAGGCCCACACTTGAAATATAACGTG-TTGTGACATTATATAATAAAG--TATACTCTCATTAAAAAGTT--TAATCTTTTAAATGAGA-TGATGGTTTGAGTTTCCATTAATGTTATAGGTCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCA-TGGG----AAGAACTCTTAATAATGTAAGCAACCTTAAATTTTGCTTATCAAATACTT-ATA-TTAAAAAATGTATTACTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335450" ref_strand="+" ref_description="SGN-E335450 [cTOE-2-N8]">
      <seq>gctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19262" stop="20657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19561" g_stop="19741" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20357" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="490" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E335450" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19561" e_stop="19741"/>
          <exon e_start="20049" e_stop="20357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAAT</genome_strand>
        <mrna_strand>GCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352600" ref_strand="+" ref_description="SGN-E352600 [cTOS-9-J6]">
      <seq>ttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19327" stop="20781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19627" g_stop="19741" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20481" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="548" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E352600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19627" e_stop="19741"/>
          <exon e_start="20049" e_stop="20481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTAT</genome_strand>
        <mrna_strand>TTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374706" ref_strand="+" ref_description="SGN-E374706 [TUS-14-H14](-)">
      <seq>tgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttccaagtttatcattgggaattaagaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaatattttacttttcgaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19344" stop="20919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19644" g_stop="19741" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20624" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="674" r_length="576" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E374706" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19644" e_stop="19741"/>
          <exon e_start="20049" e_stop="20624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAATTGTG</genome_strand>
        <mrna_strand>TGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202314" ref_strand="+" ref_description="SGN-E202314 [cLEC-6-M14]">
      <seq>gttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttccaagtttatcattgggaattaaaaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaatattttacttttcgaaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19345" stop="20919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19645" g_stop="19741" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20625" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="674" r_length="577" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E202314" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19645" e_stop="19741"/>
          <exon e_start="20049" e_stop="20625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAATTGTGG</genome_strand>
        <mrna_strand>GTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAAAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211135" ref_strand="+" ref_description="SGN-E211135 [cLEC-69-N22]">
      <seq>gttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttccaagtttatcattgggaattaagaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaatattttacttttcgaaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19345" stop="20919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19645" g_stop="19741" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20623" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="672" r_length="575" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E211135" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19645" e_stop="19741"/>
          <exon e_start="20049" e_stop="20623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAATTGT</genome_strand>
        <mrna_strand>GTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374707" ref_strand="+" ref_description="SGN-E374707 [TUS-14-H14]">
      <seq>gttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagtttttattaatgttatagtgcttttttgttgagttgtgtgttcttctttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19345" stop="20817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19645" g_stop="19741" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20517" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="567" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E374707" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19645" e_stop="19741"/>
          <exon e_start="20049" e_stop="20517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGC-TTTTTGTTGAGTTGTGTGTTCTTTTTCCAAG</genome_strand>
        <mrna_strand>GTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTTATTAATGTTATAGTGCTTTTTTGTTGAGTTGTGTGTTCTTCTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350634" ref_strand="+" ref_description="SGN-E350634 [cTOS-5-P22]">
      <seq>tttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttccaagtttatcattgggaattaagaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19743" stop="20897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20039" g_stop="20598" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E350634" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20039" e_stop="20598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATAT</genome_strand>
        <mrna_strand>TTTGTTGAAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354934" ref_strand="+" ref_description="SGN-E354934 [cTOS-19-C4]">
      <seq>tttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttccaagtttatcattgggaattaagaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19743" stop="20897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20039" g_stop="20598" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E354934" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20039" e_stop="20598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATAT</genome_strand>
        <mrna_strand>TTTGTTGAAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377080" ref_strand="+" ref_description="SGN-E377080 [TUS-21-G13](-)">
      <seq>caatcaaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatgaaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaataaaatttatggtttgagttttcattaatgttatagtgctttttgttaagatgtgtgttctttttccaagtttatcattgggaattaagaacttttaataatgtagcaacctttaattttgcttatcaaattcttaatagttgaaaaatattttacaaatcaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19755" stop="20903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20055" g_stop="20624" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E377080" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20055" e_stop="20624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATC-AAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAATTGTG</genome_strand>
        <mrna_strand>CAATCAAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGAAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATAAAATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTAAGATGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTTTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATTCTTAATAGTTGAAAAATATTTTACAAATCAAAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338132" ref_strand="+" ref_description="SGN-E338132 [cTOE-13-K14]">
      <seq>tcgagtttttttttgaagtttttcgaaaagtaaaatatttttttactattaagcatctgataagcaaaattaacggttgctacattattaagagtgcttaattcccactgataaactcggaaaaagaacacacaactcaacaaagagcactataacattggtgaaaactcaaaccataaatctcatttaaaagatgtttaactttttaatgagggtatatactctactatataatgtcacaaacacgttatataacacgtgtggacctgattcttatttcatcacttaagcgtagacagaaggattctcgaggaggtatgcttcaacaatctcgaaaagttccatggctcgatttttgccttcattatgtggtccatccttcaacacataatcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="20913" stop="19935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20613" g_stop="20235" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="398" r_length="379" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E338132" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20613" e_stop="20235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAAAAGTAAAATATTTTTTTACTATTAAGTATTTGATAAGCAAAATTAAAGGTTGCTACATTATTAAGAGTTCTTAATTCCCAATGATAAACTTGGAAAAAGAACACACAACTCAACAAAAAGCACTATAACATTAATGAAAACTCAAACCATAAATCTCATTTAAAAGATTTTTAACTTTTTAATGAGGGTATATACTTTATTATATAATGTCACAAACACGTTATATAACACGTGTGGACCTGATTCTTATTTCATCACTTAAGCGTAGACAGAAGGATTCTCGAGGAGGTATGCTTCAACAATCTTGAAAAGTTCCATGGCTTGTTTTTTGCCTTCATTATGTTCTTCATCCTTCAACACATAATCACCTT</genome_strand>
        <mrna_strand>TTTTCGAAAAGTAAAATATTTTTTTACTATTAAGCATCTGATAAGCAAAATTAACGGTTGCTACATTATTAAGAGTGCTTAATTCCCACTGATAAACTCGGAAAAAGAACACACAACTCAACAAAGAGCACTATAACATTGGTGAAAACTCAAACCATAAATCTCATTTAAAAGATGTTTAACTTTTTAATGAGGGTATATACTCTACTATATAATGTCACAAACACGTTATATAACACGTGTGGACCTGATTCTTATTTCATCACTTAAGCGTAGACAGAAGGATTCTCGAGGAGGTATGCTTCAACAATCTCGAAAAGTTCCATGGCTCGATTTTTGCCTTCATTATGTGGTCCATCCTTCAACACATAATCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390409" ref_strand="+" ref_description="SGN-E390409 [TUS-41-A6](-)">
      <seq>aaaacaagccttggaacttttctagattgtggaagcatacctcctcgagaatccttctgtttacggttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaattttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttttttttccaagtttatcattgggaattaagaacttttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaatattttacttttcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19978" stop="20919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20278" g_stop="20618" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="353"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E390409" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20278" e_stop="20618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAA</genome_strand>
        <mrna_strand>AAAACAAGCCTTGGAACTTTTCTAGATTGTGGAAGCATACCTCCTCGAGAATCCTTCTGTTTACGGTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATTTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTTTTTTTCCAAGTTTATCATTGGGAATTAAGAACTTTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744659" ref_strand="+" ref_description="SGN-E744659 [GI|438118]">
      <seq>gttgagcttagtaacgtgggcttgtaacccaagtggggatgttaatgtggtggaatgttgggctgtaccagatggttgggcttggtgggctaatttctgacttgccctatccaagcttagagttggatcatgtggcccaattgaagaaatggactacttgattcgtaaagtggggcggaatgcgtgaggctggtttcacagagcaacgataagtttcgctctaagcggtggaaggataacgagtcggtgttctctgagtccagtaacgcctgatgggttgctccaattaaaccaccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="20595" stop="21494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20892" g_stop="21194" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E744659" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20892" e_stop="21194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</genome_strand>
        <mrna_strand>GTTGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTT-CGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744663" ref_strand="+" ref_description="SGN-E744663 [GI|438113]">
      <seq>gtcgagcttagtaatgtgggcttgtaacccaaatgggggcattaatgtggtggaatgttgggctgtaccagatggttgggcttggtgggctaatttctgacttgccctatccaagcttagagttggatcatgtggcccaattgaagaaatggactacttgattcgtaaagtggggcggaatgcgtgaggctggtttcacagagcaacgataagtttccgctctaagcggtggaaggataacgagtcggtgttctctgagtccagtaatgcctgatgggctgctctaattaaaccaccactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="20592" stop="21494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20892" g_stop="21194" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E744663" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20892" e_stop="21194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</genome_strand>
        <mrna_strand>GTCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAATGCCTGATGGGCTGCTCTAATTAAACCACCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744652" ref_strand="+" ref_description="SGN-E744652 [GI|438124]">
      <seq>gccgagcttagtaatgtgggcttgtaacccaaatgggggcattaatgtggtggaatgttgggctgtaccagatggttgggcttggtgggctaatttctgacttgccctatccaagcttagagttggatcatgtggcccaattgaagaaatggactacttgattcgtaaagtggggcggaatgcgtgaggctggtttcacagagcaacgataagtttcgctctaagcggtggaaggataacgagtcggtgttctctgagtccagtaacgcctgatgggttgctccaattaaaccaccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="20592" stop="21494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20892" g_stop="21194" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E744652" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20892" e_stop="21194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</genome_strand>
        <mrna_strand>GCCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTT-CGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605158" ref_strand="+" ref_description="SGN-E605158 [21071]">
      <seq>tgtaacctaaatgggggctttaatgtggtggaatgttgggctgtcccagatggttgggcttggtgggctaatttctggcttgccctatccaagctcagagttggatcacgtggcccaattgaagaaatgggctgcttgattcctaaagtggggtggaccgcgtgaggctggtttcacagagcaacgaacagctcccgctctgtgcagtggaaggataacgagtcagtgctctccaagtccagtaacgcctgatgggctgctccaattaaaccaccactttaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="20614" stop="40837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20914" g_stop="21043" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21044" i_stop="23139" i_length="2096">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23140" g_stop="23287" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="277" r_length="147" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23288" i_stop="25178" i_length="1891">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25179" g_stop="25185" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="284" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25186" i_stop="25534" i_length="349">
            <donor d_prob="0.407" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25535" g_stop="25568" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="318" r_length="34" r_score="0.676"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E605158" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20914" e_stop="21043"/>
          <exon e_start="23140" e_stop="23287"/>
          <exon e_start="25179" e_stop="25185"/>
          <exon e_start="25535" e_stop="25568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTTCTTTTTGGAAAGTTACGATAAACCACAACTTTTTCTTTTGATGGGCTGCTCCAATTAAACCACCATTTTTCTTTTTGGAAAGTTACGATAAACCACAATTTTTTCTTTTTCATTTGGGGGGAGTTACGATAGTAGATAGTTAAACGTTGTCTCACATTCATGCGGATAAAGTTGGTGCATCATACTTGTTTTTCCTTTCATACTAGTAATACATTAAACATTATTTTCGTTGTTTTTTACCCTTCGATTAATTCACAATTTTATTGTTATTTTTAGTAGACTAAAATGACTTTAACGTAAGTGGATTATTGATGATTCATATACCAGATTCCAACTCGTTTATGACCGAGTCCAGTAACGCCTGATGGGCTGCTCCAATTAAACCACCACTTTTTTTTTTTGGGAAGTTACGATAAACCACAACTTTTTCTTTTTCTTTTGGGGGGGGGGGGGGAAGAGTTACGATAGTAGATAGTTAAACGTTGTCTCACACTCATGCGGATAAAGTTGGGGCATCGTACTTGTTTTTTCCTTTCATACTAGTATACATTAACATTATTTTCGTAGTTTTTTACCCTTCGATTATTTCACAATTTTATTGTTATTTTTGGTAGACTAAAATGACTTTGACGTAAATGAAGAAATATGATTATTGATGATTCATATACCACATTTCAACTCGTTTGTGATCGAAATATAACTATTTTTATATAATCGAAATCTGAAATAAAAAGACATTGATTAGTGAGAATTTATATATATATTTGTTTCTTATTTGAGATATAAGCTAAATCATAATTATCGGTAGAAGAAATCGTTGCTAATATACTAGCAGAATTAGAAACGGAAATATAGTTTAAGAAGTAATAAAATTGTGTTTTCTTTAGATATATATATATTATATTATTTGGACATAAAACATATTTGTTGTATCTTTTACGACATATATCGTAAGATATTATGATACAAATATATAAAATTATGCTCCTATTATACGTATTTATTTGTTAACTTTTGTAAGGATACTCGATAATAGAAAATTTTGAAACGAAGACTTCTTCTGCGATTCCTATTTTCTCTATAAGGGTCATTTGATCATGGAAAAATTATATGAATTAATACATTTTTAAAAATAAATATTGATTTTAGCGATACTTTTTGTTTATTACTATGTACTGTGATAAATTTGTAATATGTATTAAAAGTGAATTATTTATGCAATATATTTGAAGTATAATTGTATTTGAAATATATTATGTTCGTTTGGTAAAAAATTATTACATTATATTATAAGTGTATTAAAATATGAGATAAATGTATTATCCACCATTAAAACTTGTATTATATTTGAATAATAAATTTATCTTTGTAATATGTATTAGACTTGTATTATAAATGAGTTAAAAATGGTCAAGTAAAAAAAATGTTATTGCTATAAATGGTAAATATTTTTTTTATTATAATATATTTACGTAAATTTCCCTTTGATGATTATAATTGATTTGAAATCCAATTTAGTGAGGATTCTTTTAATTGATTAAAACTTAAACATTAGTAATTAGAAACTAAAGAAAAGTTTGAGAAATTATGTTTGCCTAGATCTAAATTCATAATTAGTAAATAAGATAATCTTTAATTAAAGATCCAATAAAATACTTTATTCTATATTTTATTATTTTTATCCACTCATTGAATAAAGTTTAAACTTTTATTTTTCTTTTTGCAAGTACCACATCGAAAATTTAAATCAAACTTTGGTACTATATATTGACCTGATGGACTTTATCTTATCGCCGAGCTCAGTAGCGTGGGCTTATAACCCGAGTGGGGGCATTAATGTGGTGGAATGTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACCAGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCTGATGGGCTGCTCCAACTAAACCACCACTTTTTTTGCAGAGCATATATTATTTTGGCTCGAACTCTGTATTTGTGCTTAAAAAGCCACTTAATATGTATACATACATAGTTTATCGAGAATCCAATAAGCTATGTTTTCTATATCCAGAACTCATTGACTCAAAATTTTACGTTTAGACTCGGTATGTGTGGTTAAAAAGCCACTTAATTATGTAAACATACAGTTTATCGAGAACCCAATAAGCTATGTTTTCTACATCCAGAACTCATTGACTCAAAATTCTAGGCTCGAACTCTGTATGTGTGGTTAAAAAACCACTTAATATGTATACATATATAGTTTATCGAGAATCCAATAAGCTATGTGTTCTACATCGAGAACTCAGACTCAAAAATCAAGCTCCGCCTCTGCGCTGGAGCAACTCAAATAGACAACAAAAGCTGTCTATTTATAGCATTTTAGTCCATGAAGCCAAGAATGGGAACATGGAAATCAATAATCTTAACAAAAGGGGCGTATCGCTAGTCGCTTCTGGTCTACTTAACTTACCTTTTTCCACAGGTATTTTTGCTGTTTCAGCTGATGATTTATCTGAACTTTTGCTAGATTGCATTTCTTGATCAAGTTCATCCCACCCTCCGAATCTAGATACCTCTCGGTCATCCTTACTAGCTGAAACGTCACTGTTGGACACCCATGATTGATAGCCCGTCTTTCTCTTTCGTGTCTTGGAGCTTCCTCCTCTTCTCCAAAAGTTTGTCTTGCTTGAGTTGGGAGCAGCGCGTTGTCTCTTCTTAGCTGTACTCTTGCGCGTTGGTTTGTTTTGTATCACGTCCAGTATCTTTTGGATTGCAAAGAAAAGCGTAGACTGTCCAATGGGAAGGGCGAATGCCATAGCAAAAGCTTTAGCTCCTCCAGTAGAAATCAATACTATTAGAATTGGTATTAACACAAAACCGTAGGAGCAGAAGACCTGCACTGGCCAAGAACGATAACTTGTAAGTTGTTTGACGAAAATCATCTTACCTACGTTTCAATTTCTACTCGAGAACGTTGTAGCAAGACTAGTCAATAGTTAGATAGCTATAATTAGGAAGTCAGTCGAAAATGTAGTGAAAAGAAAGCTATTGAAAGTATAGACGAACACATCGAGCATAGCTCTTAAATGATTATATTAACAGATTTATCAAGAATCAAAGAGCCTTTCAAGTCCAAAGCCTCGAGATCCTGGTTAGTAGTACTGCAGTTAGATAATGCACGATTTATACTCATAAGTTGCGGTGGAGCCAGGATATCGGACATGGACAGTGGATAGGGGAAACTTTCGGATTTTGGAAGATTTGATTGGGCATAAGACTGGAAGAAAGGCTTGGGCCATTGGGCGGGAGGACGTTTGAGGACAAATGGTAATACTCAACCAAACGATATACAGGAAGAACGTCTGAAACTGATGGAAGATCTCAGAAGAATAATTAGCATAGGAAACTAGTAAAATGTTGAAGTTCTTGAGTTTTGATACTGATTCACTTCAACGGAAGTTACTTTGGAGCCTATCAGAAACAACCTCTCTACCTTCACAAAGTAGGGGGGGTAAGGCCACGTACAGTCTACACGTTGTTTCATAACGGAAATCTTGGAACAATCAACTGTTCTATACTAAATTCACTAAGTTAGAATCATGTACTTCAACAATTTGAACTCAAAAGAACACAACCTATCATTTCAAGAAAACATTATACTAAATTCACTTAATTCTAAATCAAGCTAATGTATCTAAATACACAAAAGCAATCTGGTTCAGTCTCAGCATAATCCTAAAGGCATCACTTTACACTAAACATCTTATTTCATGAAAAAAATACAAAACAAAATAACAACATACTTCCATCTTTCTCAAAGAAAAATAAAATGGATTCAGGTTAAAAGTACAGATTCCACAAAAACCTCATCTTCCTTCAATCCAAGAAGTACCTAAAAATGTCAAAACTCCATATCCATGCCAAAAAAATCCAAACTTTAAGCTGAAAACCCAAAATTCAAGTACCCCAAAATGTCAAAACCCCACATCCATGCAAAAAAATCCAAACTTTAAGCTCAAAACTCAAAATTCAAGTACCCCAAAATGTCATAACCTCATATCCATGCAAAAAAATCCAAACTTTAAGCTGAAAACCCAAGATTCAAGTACCCCAAAATGTCAAAACTCCATATCCATGCAAAAAAAATAATCCAAACTTTAAGTAGAAAACCCAAAACTCAAGTACCCAAAATGCCAAAAAGAAACCAAACTTCACAGGAAAAAAAAACA</genome_strand>
        <mrna_strand>TGTAACCTAAATGGGGGCTTTAATGTGGTGGAATGTTGGGCTGTCCCAGATGGTTGGGCTTGGTGGGCTAATTTCTGGCTTGCCCTATCCAAGCTCAGAGTTGGATCACGTGGCCCAATTGAAGAAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGCTCTGTGCAGTGGAAGGATAACGAGTCAGTGCTCTCCAAGTCCAG-TAACGCCTGATGGGCTGCTCCAATTAAACCACCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAA.............................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587428" ref_strand="+" ref_description="SGN-E587428 [78545]">
      <seq>cccaaatgggggcattaatgtggtggaatgttgggctgtcccagatggttgggcttagtgggctaatttccggcttgccctatccaagctcagagttggatcacgtggctcaattgaagaaatgggctgcttgattcctaaagtggggtggaccgcgtgaggctggtttcacagagcaacgaacagctcctaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="20619" stop="40837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20919" g_stop="21109" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21110" i_stop="25178" i_length="4069">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25179" g_stop="25185" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="196" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25186" i_stop="25534" i_length="349">
            <donor d_prob="0.407" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25535" g_stop="25566" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="228" r_length="32" r_score="0.719"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E587428" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20919" e_stop="21109"/>
          <exon e_start="25179" e_stop="25185"/>
          <exon e_start="25535" e_stop="25566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTTCTTTTTGGAAAGTTACGATAAACCACAACTTTTTCTTTTGATGGGCTGCTCCAATTAAACCACCATTTTTCTTTTTGGAAAGTTACGATAAACCACAATTTTTTCTTTTTCATTTGGGGGGAGTTACGATAGTAGATAGTTAAACGTTGTCTCACATTCATGCGGATAAAGTTGGTGCATCATACTTGTTTTTCCTTTCATACTAGTAATACATTAAACATTATTTTCGTTGTTTTTTACCCTTCGATTAATTCACAATTTTATTGTTATTTTTAGTAGACTAAAATGACTTTAACGTAAGTGGATTATTGATGATTCATATACCAGATTCCAACTCGTTTATGACCGAGTCCAGTAACGCCTGATGGGCTGCTCCAATTAAACCACCACTTTTTTTTTTTGGGAAGTTACGATAAACCACAACTTTTTCTTTTTCTTTTGGGGGGGGGGGGGGAAGAGTTACGATAGTAGATAGTTAAACGTTGTCTCACACTCATGCGGATAAAGTTGGGGCATCGTACTTGTTTTTTCCTTTCATACTAGTATACATTAACATTATTTTCGTAGTTTTTTACCCTTCGATTATTTCACAATTTTATTGTTATTTTTGGTAGACTAAAATGACTTTGACGTAAATGAAGAAATATGATTATTGATGATTCATATACCACATTTCAACTCGTTTGTGATCGAAATATAACTATTTTTATATAATCGAAATCTGAAATAAAAAGACATTGATTAGTGAGAATTTATATATATATTTGTTTCTTATTTGAGATATAAGCTAAATCATAATTATCGGTAGAAGAAATCGTTGCTAATATACTAGCAGAATTAGAAACGGAAATATAGTTTAAGAAGTAATAAAATTGTGTTTTCTTTAGATATATATATATTATATTATTTGGACATAAAACATATTTGTTGTATCTTTTACGACATATATCGTAAGATATTATGATACAAATATATAAAATTATGCTCCTATTATACGTATTTATTTGTTAACTTTTGTAAGGATACTCGATAATAGAAAATTTTGAAACGAAGACTTCTTCTGCGATTCCTATTTTCTCTATAAGGGTCATTTGATCATGGAAAAATTATATGAATTAATACATTTTTAAAAATAAATATTGATTTTAGCGATACTTTTTGTTTATTACTATGTACTGTGATAAATTTGTAATATGTATTAAAAGTGAATTATTTATGCAATATATTTGAAGTATAATTGTATTTGAAATATATTATGTTCGTTTGGTAAAAAATTATTACATTATATTATAAGTGTATTAAAATATGAGATAAATGTATTATCCACCATTAAAACTTGTATTATATTTGAATAATAAATTTATCTTTGTAATATGTATTAGACTTGTATTATAAATGAGTTAAAAATGGTCAAGTAAAAAAAATGTTATTGCTATAAATGGTAAATATTTTTTTTATTATAATATATTTACGTAAATTTCCCTTTGATGATTATAATTGATTTGAAATCCAATTTAGTGAGGATTCTTTTAATTGATTAAAACTTAAACATTAGTAATTAGAAACTAAAGAAAAGTTTGAGAAATTATGTTTGCCTAGATCTAAATTCATAATTAGTAAATAAGATAATCTTTAATTAAAGATCCAATAAAATACTTTATTCTATATTTTATTATTTTTATCCACTCATTGAATAAAGTTTAAACTTTTATTTTTCTTTTTGCAAGTACCACATCGAAAATTTAAATCAAACTTTGGTACTATATATTGACCTGATGGACTTTATCTTATCGCCGAGCTCAGTAGCGTGGGCTTATAACCCGAGTGGGGGCATTAATGTGGTGGAATGTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACCAGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCTGATGGGCTGCTCCAACTAAACCACCACTTTTTTTGCAGAGCATATATTATTTTGGCTCGAACTCTGTATTTGTGCTTAAAAAGCCACTTAATATGTATACATACATAGTTTATCGAGAATCCAATAAGCTATGTTTTCTATATCCAGAACTCATTGACTCAAAATTTTACGTTTAGACTCGGTATGTGTGGTTAAAAAGCCACTTAATTATGTAAACATACAGTTTATCGAGAACCCAATAAGCTATGTTTTCTACATCCAGAACTCATTGACTCAAAATTCTAGGCTCGAACTCTGTATGTGTGGTTAAAAAACCACTTAATATGTATACATATATAGTTTATCGAGAATCCAATAAGCTATGTGTTCTACATCGAGAACTCAGACTCAAAAATCAAGCTCCGCCTCTGCGCTGGAGCAACTCAAATAGACAACAAAAGCTGTCTATTTATAGCATTTTAGTCCATGAAGCCAAGAATGGGAACATGGAAATCAATAATCTTAACAAAAGGGGCGTATCGCTAGTCGCTTCTGGTCTACTTAACTTACCTTTTTCCACAGGTATTTTTGCTGTTTCAGCTGATGATTTATCTGAACTTTTGCTAGATTGCATTTCTTGATCAAGTTCATCCCACCCTCCGAATCTAGATACCTCTCGGTCATCCTTACTAGCTGAAACGTCACTGTTGGACACCCATGATTGATAGCCCGTCTTTCTCTTTCGTGTCTTGGAGCTTCCTCCTCTTCTCCAAAAGTTTGTCTTGCTTGAGTTGGGAGCAGCGCGTTGTCTCTTCTTAGCTGTACTCTTGCGCGTTGGTTTGTTTTGTATCACGTCCAGTATCTTTTGGATTGCAAAGAAAAGCGTAGACTGTCCAATGGGAAGGGCGAATGCCATAGCAAAAGCTTTAGCTCCTCCAGTAGAAATCAATACTATTAGAATTGGTATTAACACAAAACCGTAGGAGCAGAAGACCTGCACTGGCCAAGAACGATAACTTGTAAGTTGTTTGACGAAAATCATCTTACCTACGTTTCAATTTCTACTCGAGAACGTTGTAGCAAGACTAGTCAATAGTTAGATAGCTATAATTAGGAAGTCAGTCGAAAATGTAGTGAAAAGAAAGCTATTGAAAGTATAGACGAACACATCGAGCATAGCTCTTAAATGATTATATTAACAGATTTATCAAGAATCAAAGAGCCTTTCAAGTCCAAAGCCTCGAGATCCTGGTTAGTAGTACTGCAGTTAGATAATGCACGATTTATACTCATAAGTTGCGGTGGAGCCAGGATATCGGACATGGACAGTGGATAGGGGAAACTTTCGGATTTTGGAAGATTTGATTGGGCATAAGACTGGAAGAAAGGCTTGGGCCATTGGGCGGGAGGACGTTTGAGGACAAATGGTAATACTCAACCAAACGATATACAGGAAGAACGTCTGAAACTGATGGAAGATCTCAGAAGAATAATTAGCATAGGAAACTAGTAAAATGTTGAAGTTCTTGAGTTTTGATACTGATTCACTTCAACGGAAGTTACTTTGGAGCCTATCAGAAACAACCTCTCTACCTTCACAAAGTAGGGGGGGTAAGGCCACGTACAGTCTACACGTTGTTTCATAACGGAAATCTTGGAACAATCAACTGTTCTATACTAAATTCACTAAGTTAGAATCATGTACTTCAACAATTTGAACTCAAAAGAACACAACCTATCATTTCAAGAAAACATTATACTAAATTCACTTAATTCTAAATCAAGCTAATGTATCTAAATACACAAAAGCAATCTGGTTCAGTCTCAGCATAATCCTAAAGGCATCACTTTACACTAAACATCTTATTTCATGAAAAAAATACAAAACAAAATAACAACATACTTCCATCTTTCTCAAAGAAAAATAAAATGGATTCAGGTTAAAAGTACAGATTCCACAAAAACCTCATCTTCCTTCAATCCAAGAAGTACCTAAAAATGTCAAAACTCCATATCCATGCCAAAAAAATCCAAACTTTAAGCTGAAAACCCAAAATTCAAGTACCCCAAAATGTCAAAACCCCACATCCATGCAAAAAAATCCAAACTTTAAGCTCAAAACTCAAAATTCAAGTACCCCAAAATGTCATAACCTCATATCCATGCAAAAAAATCCAAACTTTAAGCTGAAAACCCAAGATTCAAGTACCCCAAAATGTCAAAACTCCATATCCATGCAAAAAAAATAATCCAAACTTTAAGTAGAAAACCCAAAACTCAAGTACCCAAAATGCCAAAAAGAAACCAAACTTCACAGGAAAAAAAAA</genome_strand>
        <mrna_strand>CCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTCCCAGATGGTTGGGCTTAGTGGGCTAATTTCCGGCTTGCCCTATCCAAGCTCAGAGTTGGATCACGTGGCTCAATTGAAGAAATGGGCTGCTTGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAACAG-CTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TAAAAA.............................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744661" ref_strand="+" ref_description="SGN-E744661 [GI|438116]">
      <seq>gttgggttgacccagatggttgggttcggtaggcttatagtctggcctgccctctccaagcatggagttggatcacgtggcttagtcgaaagacctgggttgcttgattcctaaagtggggtggactgcgtgaggctggtttcacagagcaacgaacagcttccgctctgtgcagtggaaggataacgggtcagtgctcagcgagtccagttaacgccctgatgggctgctccaactaaaccaccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="22743" stop="23590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23043" g_stop="23290" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E744661" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23043" e_stop="23290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACC-AGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACG-CCTGATGGGCTGCTCCAACTAAACCACCACTTT</genome_strand>
        <mrna_strand>GTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACCTGGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCCTGATGGGCTGCTCCAACTAAACCACCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222365" ref_strand="+" ref_description="SGN-E222365 [cLEL-16-G19](-)">
      <seq>tgggtgtccaacagtgacgtttcagctagtaaggatgaccgagaggtatctagattcggagggtgggatgaacttgatcaagaaatgcaatctagcaaaagttcagataaatcatcagctgaaacagcaaaaatacctgtgaaaaaggtaagttaagtagaccagaagcgactagcgatacgccccctttgttaagattattgatttccatgttcccattcttggcttcatggactaaaatgctataaatagacagcttttgttgtctatttgagttgctccagcgcagaggcggagcttgatttttgagtctgagttctcgatgtagaacacatagcttattggattctcgataaactatatatgtatacatattaagtggttttttaaccacacatacagagttcgagcctagaattttgagtcaatgagttctggatgtagaaaacatagcttattgggttctcgataaactgtatgtccacataattaagtggctttttaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="24257" stop="23143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23957" g_stop="23449" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="524"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E222365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23957" e_stop="23449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</genome_strand>
        <mrna_strand>TGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCTGT-GAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCCTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTCCACATAATTAAGTGGCTTTTTAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222615" ref_strand="+" ref_description="SGN-E222615 [cLEL-16-G19](-)">
      <seq>aggtaagttaagtagaccagaagcgactagcgatacgccccctttgttaagattattgatttccatgttcccattcttggcttcatggactaaaatgctataaatagacagcctttgttgtctatttgagttgctccagcgcagaggcggagcttgatttttgagtctgagttctcgatgtagaacacatagcttattggattctcgataaactatatatgtatacatattaagtggttttttaaccacacatacagagttcgagcctagaattttgagtcaatgagttctggatgtagaaaacatagcttattgggttctcgataaactgtatgtttacataattaagtggctttttaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="24111" stop="23143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23811" g_stop="23449" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="379"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E222615" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23811" e_stop="23449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</genome_strand>
        <mrna_strand>AGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCCTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCCTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429429" ref_strand="+" ref_description="SGN-E429429 [STM-52-E11]">
      <seq>gggccccccctcgagttttttaattctttttttatttgtgcttaaaaatccacttaatatgtatacatatatagtttatcgagaatccaataagctatgtgttctacatccagaactcatagactcaaaaatctagttccgactcagcactggagtaactcaaattgacaacaaaagctgtctattatagcaacttagtccatgaagccaagaatgggaacatggaaatcaataatcttaacagaaggggcgtatcgctagtcgcttctggtctacttaacttacccttttccacaggtatttttgatgtttcagctgatgatttatctgaactttcaaatgaacttttgctagattgcatttcttgatcaagttcatcccaccctccatatctagatacctctcggtcacccttactagctgaaacgtcatcgttggacacccatgattgatagcctgtctttctctttcgtgtcttggagtttcctcctcttctccaaaagtttgtcttgcttgaggtgggagcagcgcgttgtctcttcttaggtttactcttgcgcgttggtttgttttgtatcacgtccagtatcttttggattgcaaaaaaaagtgtggattgtccaatgggaagggcgaatgccataacaaaagctttagctcctccagtagaaatcaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="23143" stop="24493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23558" g_stop="24193" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="681" r_length="649" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E429429" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23558" e_stop="24193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTGTGGTTAAAAAACCACTTAATATGTATACATATATAGTTTATCGAGAATCCAATAAGCTATGTGTTCTACATCGAGAACTC--AGACTCAAAAATCAAGCTCCGCCTCTGCGCTGGAGCAACTCAAATAGACAACAAAAGCTGTCTATTTATAGCATTTTAGTCCATGAAGCCAAGAATGGGAACATGGAAATCAATAATCTTAACAAAAGGGGCGTATCGCTAGTCGCTTCTGGTCTACTTAACTTACCTTTTTCCACAGGTATTTTTGCTGTTTCAGCTGATGA--T-T-T--A---TC---TGAACTTTTGCTAGATTGCATTTCTTGATCAAGTTCATCCCACCCTCCGAATCTAGATACCTCTCGGTCATCCTTACTAGCTGAAACGTCACTGTTGGACACCCATGATTGATAGCCCGTCTTTCTCTTTCGTGTCTTGGAGCTTCCTCCTCTTCTCCAAAAGTTTGTCTTGCTTGAGTTGGGAGCAGCGCGTTGTCTCTTCTTAGCTGTACTCTTGCGCGTTGGTTTGTTTTGTATCACGTCCAGTATCTTTTGGATTGCAAAGAAAAGCGTAGACTGTCCAATGGGAAGGGCGAATGCCATAGCAAAAGCTTTAGCTCCTCCAGTAGAAATCAATACTA</genome_strand>
        <mrna_strand>TATTTGTGCTTAAAAATCCACTTAATATGTATACATATATAGTTTATCGAGAATCCAATAAGCTATGTGTTCTACATCCAGAACTCATAGACTCAAAAATCTAGTTCCGACTCAGCACTGGAGTAACTCAAATTGACAACAAAAGCTGTCTA-TTATAGCAACTTAGTCCATGAAGCCAAGAATGGGAACATGGAAATCAATAATCTTAACAGAAGGGGCGTATCGCTAGTCGCTTCTGGTCTACTTAACTTACCCTTTTCCACAGGTATTTTTGATGTTTCAGCTGATGATTTATCTGAACTTTCAAATGAACTTTTGCTAGATTGCATTTCTTGATCAAGTTCATCCCACCCTCCATATCTAGATACCTCTCGGTCACCCTTACTAGCTGAAACGTCATCGTTGGACACCCATGATTGATAGCCTGTCTTTCTCTTTCGTGTCTTGGAGTTTCCTCCTCTTCTCCAAAAGTTTGTCTTGCTTGAGGTGGGAGCAGCGCGTTGTCTCTTCTTAGGTTTACTCTTGCGCGTTGGTTTGTTTTGTATCACGTCCAGTATCTTTTGGATTGCAAAAAAAAGTGTGGATTGTCCAATGGGAAGGGCGAATGCCATAACAAAAGCTTTAGCTCCTCCAGTAGAAATCAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701699" ref_strand="+" ref_description="SGN-E701699 [FA16CG10]">
      <seq>ctgaagaccaccatcaataggggtgatggtggtcttcttcatcttcacttacccttaaaccccagcccttcacctcttcttttctttactcaaaaacccatttctttaaaccctctaaatccactctcttctcatcttctgctgcagaagcagcagcagccccttcacatctgctgcagtaggccttctagtaagtgggactcaaatgctgagtccatcaagaaccagaattttaataatcttgaagatgaggaagaggagcttgatgaggaggaattcttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatctttaagtgcaggtcttctgctcctacggttttgtgttaataccaattctaatagtattgatttctactggaggagctaaagcttttgctatggcattcgcccttcccattggacagtctacgcttttctttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtacagctaagaagagacaacgcgctgctcccaactcaagcaagacaaacttttggagaagaggaggaagctccaagacacgaaagagaaagacgggctatcaatcatgggtgtccaacagtgacgtttcagctagtaaggatgaccgagaggtatctagattcggagggtgggatgaacttgatcaagaaatgcaatctagcaaaagttcagataaatcatcagctgaaacagcaaaaaatacctgtggaaaaaggtaagttaagtagaccagaagcgactagcgatacgccccttttgttaagattattgatttccatgttcccattcttggcttcatggactaaaatgctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26260" stop="23409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25960" g_stop="25625" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24239" i_length="1386">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24238" g_stop="23709" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="867" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E701699" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25960" e_stop="25625"/>
          <exon e_start="24238" e_stop="23709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGC-AAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAA</genome_strand>
        <mrna_strand>CTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465667" ref_strand="+" ref_description="SGN-E465667 [cPRO-21-J16]">
      <seq>cttcttttctttactcaaaaacccatttctttaaaccctttaaatccactctcttctcattttcagaagcagcagccccttcatatctgctgcagcaggtcttctagtaagtgggactcaaatgctgagtctatcaagaaccagaattttagtaatcttgaagatgaggaagaggagcttgatgaggatggatacttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatttttaagtgcaggttttctgctcctacggttttgtgtttctaccaattctaatagtattgatttctactggaggagctaaagcttttgttatggcattcgcccttcccattggacaatccacacttttttttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtaaacctaagaagagacaacgcgctgctcccacctcaagcaagacaaacttttggagaagaggaggaaactccaagacacgaaagagaaagacaggctatcaatcatgggtgtccaacgatgacgtttcagctagtaagggtgaccgagaggtatctagatatggagggtgggatgaacttgatcaagaaatgcaatctagcaaaagttcatttgaaagttcagataaatcatcagctgaaacatcaaaaatacctgtggaaaagggtnnagttagtagaccagaagcgactagcgatacgcccctttctgtaagaatattgatttccatgttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26185" stop="23440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25885" g_stop="25625" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24239" i_length="1386">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24238" g_stop="23740" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="763" r_length="511" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E465667" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25885" e_stop="25625"/>
          <exon e_start="24238" e_stop="23740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCT------AG--CA----AAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCC</genome_strand>
        <mrna_strand>CTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTTTAAATCCACTCTCTTCTCA--TT-T--T-CAG-A--AGCAGCAGCCCCTTCATATCTGCTGCAGCAGGTCTTCTAGTAAGTGGGACTCAAATGCTGAGTCTATCAAGAACCAGAATTTTAGTAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGATGGATACTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGTTTTCTGCTCCTACGGTTTTGTGTTTCTACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGTTATGGCATTCGCCCTTCCCATTGGACAATCCACACTTTTTTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTAAACCTAAGAAGAGACAACGCGCTGCTCCCACCTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAACTCCAAGACACGAAAGAGAAAGACAGGCTATCAATCATGGGTGTCCAACGATGACGTTTCAGCTAGTAAGGGTGACCGAGAGGTATCTAGATATGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCATTTGAAAGTTCAGATAAATCATCAGCTGAAACATCAAAAATACCTGTGGAAAAGGGTNNAGTTAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTCTGTAAGAATATTGATTTCCATGTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429428" ref_strand="+" ref_description="SGN-E429428 [STM-52-E11]">
      <seq>cttcttttctttactcaaaaacccatttctttaaaccctttaaatccactctcttctcattttcagaagcagcagccccttcatatctgctgcagcaggtcttctagtaagtgggactcaaatgctgagtctatcaagaaccagaattttagtaatcttgaagatgaggaagaggagcttgatgaggatggatacttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatttttaagtgcaggttttctgctcctacggttttgtgtttctaccaattctaatagtattgatttctactggaggagctaaagcttttgttatggcattcgcccttcccattggacaatccacacttttttttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtaaacctaagaagagacaacgcgctgctcccacctcaagcaagacaaacttttggagaagaggaggaaactccaagacacgaaagagaaagacaggctatcaatcatgggtgtccaacgatgacgtttcagctagtaagggtgaccgagaggtatctagatatggagggtgggatgaacttgatcaagaaatgcaatctagcaaaagttcatttgaaagttcagataaatcatcagctgaaacatcaaaaatacctgtggaaaagggtaagttaagtagaccagaagcgactagcgatacgccccttctgttaagattattgatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26185" stop="23448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25885" g_stop="25625" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24239" i_length="1386">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24238" g_stop="23748" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="755" r_length="503" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E429428" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25885" e_stop="25625"/>
          <exon e_start="24238" e_stop="23748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCT------AG--CA----AAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCC</genome_strand>
        <mrna_strand>CTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTTTAAATCCACTCTCTTCTCA--TT-T--T-CAG-A--AGCAGCAGCCCCTTCATATCTGCTGCAGCAGGTCTTCTAGTAAGTGGGACTCAAATGCTGAGTCTATCAAGAACCAGAATTTTAGTAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGATGGATACTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGTTTTCTGCTCCTACGGTTTTGTGTTTCTACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGTTATGGCATTCGCCCTTCCCATTGGACAATCCACACTTTTTTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTAAACCTAAGAAGAGACAACGCGCTGCTCCCACCTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAACTCCAAGACACGAAAGAGAAAGACAGGCTATCAATCATGGGTGTCCAACGATGACGTTTCAGCTAGTAAGGGTGACCGAGAGGTATCTAGATATGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCATTTGAAAGTTCAGATAAATCATCAGCTGAAACATCAAAAATACCTGTGGAAAAGGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTCTGTTAAGATTATTGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347649" ref_strand="+" ref_description="SGN-E347649 [cTOF-26-D10]">
      <seq>tcttcttttctttactcaaaaacccatttctttaaaccctctaaatccactctcttctcatcttctgctgcagaagcagcagcagccccttcacatctgctgcagtaggccttctagtaagtgggactcaaatgctgagtccatcaagaaccagaattttaataatcttgaagatgaggaagaggagcttgatgaggaggaattcttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatctttaaggtcttctgctcctacggttttgtgttaataccaattctaatagtattgatttctactggaggagctaaagcttttgctatggcattcgcccttcccattggacagtctacgcttttctttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtacagctaagaagagacaacgcgctgctcccaactcaagcaagacaaacttttggagaagaggaggaagctccaagacacgaaagagaaagacgggctatcaatcatgggtgtccaacagtgacgtttcagctagtaaggatgaccgagaggtatctagattcggagggtgggatgaacttgatcaagaaatgcaatctagcaaaagttcagataaatcatcagctgaaacagcaaaatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26186" stop="23520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25886" g_stop="25625" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24234" i_length="1391">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24233" g_stop="23820" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="675" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E347649" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25886" e_stop="25625"/>
          <exon e_start="24233" e_stop="23820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCT</genome_strand>
        <mrna_strand>TCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGC-AAAATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457033" ref_strand="+" ref_description="SGN-E457033 [cPRO-2-M19]">
      <seq>cttcttttctttactcaaaaacccatttctttaaaccctttaaatccactctcttctcattttcagaagcagcagccccttcatatctgctgcagcaggtcttctagtaagtgggactcaaatgctgagtctatcaagaaccagaattttagtaatcttgaagatgaggaagaggagcttgatgaggatggatacttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatttttaagtgcaggttttctgctcctacggttttgtgtttctaccaattctaatagtattgatttctactggaggagctaaagcttttgttatggcattcgcccttcccattggacaatccacacttttttttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtaaacctaagaagagacaacgcgctgctcccacctcaagcaagacaaacttttggagaagaggaggaaactccaagacacgaaagagaaagacaggctatcaatcatgggtgtccaacgatgacgtttcagctagtaagggtgaccgagaggtatctagatatggagggtgggatgaacttgatcaagaaatgcaatctagcaaaagttcatttgaaagttcagataaatcatcagctgaaacatcaaaaatacctggtggaaaagggtaagttaagtagaccagaagcgactagcgatacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26185" stop="23472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25885" g_stop="25625" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24239" i_length="1386">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24238" g_stop="23832" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="659" r_length="407" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E457033" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25885" e_stop="25625"/>
          <exon e_start="24238" e_stop="23832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACA</genome_strand>
        <mrna_strand>CTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTTTAAATCCACTCTCTTCTCA--TT-T--T-CAG-A--AGCAGCAGCCCCTTCATATCTGCTGCAGCAGGTCTTCTAGTAAGTGGGACTCAAATGCTGAGTCTATCAAGAACCAGAATTTTAGTAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGATGGATACTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGTTTTCTGCTCCTACGGTTTTGTGTTTCTACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGTTATGGCATTCGCCCTTCCCATTGGACAATCCACACTTTTTTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTAAACCTAAGAAGAGACAACGCGCTGCTCCCACCTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAACTCCAAGACACGAAAGAGAAAGACAGGCTATCAATCATGGGTGTCCAACGATGACGTTTCAGCTAGTAAGGGTGACCGAGAGGTATCTAGATATGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCATTTGAAAGTTCAGATAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611966" ref_strand="-" ref_description="SGN-E611966 [61723]">
      <seq>tcttttctttactcaaaaacccatttctttaaaccctttaaatccactctcttctcattttcagaagcagcagccccttcatatctgctgcagcaggtcttctagtaagtgggactcaaatgctgagtctatcaagaaccagaattttagtaatcttgaagatgaggaagaggagcttgatgaggatggatacttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatctttaaggttttctgctcctacggtattgtgtttctaccaattctaatagtattgatttctactggaggagctaaagcttttgttatggcattcgcccttcccattggacaatccacacttttttttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtacaactaagaagagacaacgcgctgctcccacctcaagcaagacaaacttttggagaagaggaggaagctccaagacacgaaagagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26183" stop="23673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25883" g_stop="25625" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24234" i_length="1391">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24233" g_stop="23973" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="511" r_length="261" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E611966" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611966" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25883" e_stop="25625"/>
          <exon e_start="24233" e_stop="23973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAG</genome_strand>
        <mrna_strand>TCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTTTAAATCCACTCTCTTCTCA--TT-T--T-CAG-A--AGCAGCAGCCCCTTCATATCTGCTGCAGCAGGTCTTCTAGTAAGTGGGACTCAAATGCTGAGTCTATCAAGAACCAGAATTTTAGTAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGATGGATACTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTGCTCCTACGGTATTGTGTTTCTACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGTTATGGCATTCGCCCTTCCCATTGGACAATCCACACTTTTTTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAACTAAGAAGAGACAACGCGCTGCTCCCACCTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270653" ref_strand="+" ref_description="SGN-E270653 [cLEM-6-M23]">
      <seq>gccaatggaatggactgaagaccaccatcaataggggtgatggtggtcttcttcatcttcacttacccttaaaccccagcccttcacctcttcttttctttactcaaaaacccatttctttaaaccctctaaatccactctcttctcatcttctgctgcagaagcagcagcagccccttcacatctgctgcagtaggccttctagtaagtgggactcaaatgctgagtccatcaagaaccagaattttaataatcttgaagatgaggaagaggagcttgatgaggaggaattcttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatctttaaggtcttctgctcctacggttttgtgttaataccaattctaatagtattgatttctactggaggagctaaagcttttgctatggcattcgcccttcccattggacagtctacgcttttctttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtacagctaagaagagacaacgcgctgctcccaactcaagcaagacaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26274" stop="23711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25974" g_stop="25625" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24234" i_length="1391">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24233" g_stop="24011" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="573" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E270653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25974" e_stop="25625"/>
          <exon e_start="24233" e_stop="24011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGGAATGGACTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTT</genome_strand>
        <mrna_strand>GCCAATGGAATGGACTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289763" ref_strand="+" ref_description="SGN-E289763 [cLET-4-L6]">
      <seq>gcccttcacctgttcttttgtttactcaaaaacccatttctttaaaccctctaaatccactctcttctgatcttctgctgcagaagcagcagcagccccttcacatctgctgcggtaggccttctagtaagggggactnaaatgctgagtccatcaagaaccagaattttaataatcttgaagatgaggaagaggagcttgatgaggaggaattcttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatctttaaggtcttctgctcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26196" stop="25323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25896" g_stop="25625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E289763" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25896" e_stop="25625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG</genome_strand>
        <mrna_strand>GCCCTTCACCTGTTCTTTTGTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTGATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCGGTAGGCCTTCTAGTAAGGGGGACTNAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368299" ref_strand="+" ref_description="SGN-E368299 [TUS-26-I16]">
      <seq>tctcgagtttttttttttttttttttctttcttttaccattagtctacaaaacagaaaccattaaaaagtacaaaatgttgaatacataatatataaacacttgcatgtttgtggctggaaattttcttttttttcttcttgaaccttcacttgaaagaaaaccaactagtctatttcaatttctgatgtacatttgaagccatatatcaatacaacgaaatgtcaaactttgcagaaacagcaatcccaacttttcgacgacatttcctcttctatcatgttagtattttctcagctctcctgaagccaccttaagcacaacgatttttgcactctcttgtagcacgaaaaagatcagtcagtctgtaatgtctaacgtaagtacacaaccggaagtaaaaatcctctctttgccaccagtggcacacattcaaccaacttatacagtaaaccatcagcaacacactcaactttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26198" stop="27261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26498" g_stop="26961" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="479" r_length="465" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E368299" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26498" e_stop="26961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTTTTTCTTTCTTTTACCATTAGTCTACAAAACAGAAACCATTAAAAAGTACAAAATGTTGAATACATAATATATAAACACTTGCATGTTTGTGGCTGGAAATTTTCTTTTTTTTCTTCTTGAACCTTCACTTGAAAGAAAACCAACTAGTCTATTTCAATTTCTGATGTACATTTGAAGCCATATATCAATACAACGAAATGTCAAACTTTGCAGAAACAGCAATCCCAACTTTTCGACGACATTTCCTCTTCTATCATGTTAGTATTTTCTCAGCTCTCCTGAAGCCACCTTAAGCACAACGATTTTTGCACTCTCTTGTAGCACGAAAAAGATCAGTCAGTCTGTAATGTCTAACGTAAGTACACAACCGGAAGTAAAAATCCTCTCTTTGCCACCAGTGGCACACATTCAACCAAC-TATACAGCAAACCATCAGCAACACACTCAACTTTGAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTCTTTCTTTTACCATTAGTCTACAAAACAGAAACCATTAAAAAGTACAAAATGTTGAATACATAATATATAAACACTTGCATGTTTGTGGCTGGAAATTTTCTTTTTTTTCTTCTTGAACCTTCACTTGAAAGAAAACCAACTAGTCTATTTCAATTTCTGATGTACATTTGAAGCCATATATCAATACAACGAAATGTCAAACTTTGCAGAAACAGCAATCCCAACTTTTCGACGACATTTCCTCTTCTATCATGTTAGTATTTTCTCAGCTCTCCTGAAGCCACCTTAAGCACAACGATTTTTGCACTCTCTTGTAGCACGAAAAAGATCAGTCAGTCTGTAATGTCTAACGTAAGTACACAACCGGAAGTAAAAATCCTCTCTTTGCCACCAGTGGCACACATTCAACCAACTTATACAGTAAACCATCAGCAACACACTCAACTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259437" ref_strand="+" ref_description="SGN-E259437 [cLEG-42-A3]">
      <seq>tctttttttctttcttttaccattagtctacaaaacagagaccattaaaaagtacaaaatgttgaatacataatatataaacacttgcatgtttgtggctggaaattttcttttttttcttcttgaaccttcacttgaaagaaaaccaactagtctatttcaatttctgatgtacatttgaagccatatatcaatacaacgaaatgtcaaactttgcagaaacagcaatcccaacttttcgacgacatttcctcttctatcatgttagtattttctcagctctcctgaagccaccttaagcacaacgatttttgcactctcttgtagcacgaaaaagatcagtcagtctgtaatgtctaacgtaagtacacaaccggaagtaaaaatcctctctttgccaccagtggcacacattcaaccaactatacagcaaaccatcagcaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26202" stop="27249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26501" g_stop="26949" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E259437" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26501" e_stop="26949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTCTTTCTTTTACCATTAGTCTACAAAACAGAAACCATTAAAAAGTACAAAATGTTGAATACATAATATATAAACACTTGCATGTTTGTGGCTGGAAATTTTCTTTTTTTTCTTCTTGAACCTTCACTTGAAAGAAAACCAACTAGTCTATTTCAATTTCTGATGTACATTTGAAGCCATATATCAATACAACGAAATGTCAAACTTTGCAGAAACAGCAATCCCAACTTTTCGACGACATTTCCTCTTCTATCATGTTAGTATTTTCTCAGCTCTCCTGAAGCCACCTTAAGCACAACGATTTTTGCACTCTCTTGTAGCACGAAAAAGATCAGTCAGTCTGTAATGTCTAACGTAAGTACACAACCGGAAGTAAAAATCCTCTCTTTGCCACCAGTGGCACACATTCAACCAACTATACAGCAAACCATCAGCAACACAC</genome_strand>
        <mrna_strand>TCTTTTTTTCTTTCTTTTACCATTAGTCTACAAAACAGAGACCATTAAAAAGTACAAAATGTTGAATACATAATATATAAACACTTGCATGTTTGTGGCTGGAAATTTTCTTTTTTTTCTTCTTGAACCTTCACTTGAAAGAAAACCAACTAGTCTATTTCAATTTCTGATGTACATTTGAAGCCATATATCAATACAACGAAATGTCAAACTTTGCAGAAACAGCAATCCCAACTTTTCGACGACATTTCCTCTTCTATCATGTTAGTATTTTCTCAGCTCTCCTGAAGCCACCTTAAGCACAACGATTTTTGCACTCTCTTGTAGCACGAAAAAGATCAGTCAGTCTGTAATGTCTAACGTAAGTACACAACCGGAAGTAAAAATCCTCTCTTTGCCACCAGTGGCACACATTCAACCAACTATACAGCAAACCATCAGCAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224734" ref_strand="+" ref_description="SGN-E224734 [cLEL-27-C19](-)">
      <seq>atttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaacatgcaagtgtttatatattatgtattcaacattttgtactttttaatggtttctgttttgtagactcatggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="27187" stop="26200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26887" g_stop="26502" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E224734" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26887" e_stop="26502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAGAAAGAAAAAGAA</genome_strand>
        <mrna_strand>ATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTCATGGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224514" ref_strand="+" ref_description="SGN-E224514 [cLEL-27-C19](-)">
      <seq>cattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgtttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaacatgcaagtgtttatatattatgtattcaacattttgtactttttaatggtttctgttttgtagactaatggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="27155" stop="26200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26855" g_stop="26502" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E224514" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26855" e_stop="26502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCG-TTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAGAAAGAAAAAGAA</genome_strand>
        <mrna_strand>CATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740546" ref_strand="+" ref_description="SGN-E740546 [LC21DF03]">
      <seq>ctgcaatttgatactcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28737" stop="26290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28437" g_stop="28369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="136" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27001" g_stop="26589" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="549" r_length="413" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26588" i_stop="26528" i_length="61">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26527" g_stop="26522" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="555" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E740546" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28437" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26589"/>
          <exon e_start="26527" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAAT</genome_strand>
        <mrna_strand>CTGCAATTTGAT-ACTCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAAAAA.............................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736420" ref_strand="+" ref_description="SGN-E736420 [LC05CH03]">
      <seq>ctgcaatttgataaatcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28737" stop="26290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28437" g_stop="28369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="137" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27001" g_stop="26589" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="550" r_length="413" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26588" i_stop="26528" i_length="61">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26527" g_stop="26522" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="556" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E736420" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28437" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26589"/>
          <exon e_start="26527" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAAT</genome_strand>
        <mrna_strand>CTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAAAAA.............................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739590" ref_strand="+" ref_description="SGN-E739590 [LC18AC04]">
      <seq>ctgcaatttgataaatcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28737" stop="26290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28437" g_stop="28369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="137" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27001" g_stop="26589" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="550" r_length="413" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26588" i_stop="26528" i_length="61">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26527" g_stop="26522" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="556" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E739590" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28437" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26589"/>
          <exon e_start="26527" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAAT</genome_strand>
        <mrna_strand>CTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAAAAA.............................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740769" ref_strand="+" ref_description="SGN-E740769 [LC22DB10]">
      <seq>ctgcaatttgataaatcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28737" stop="26290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28437" g_stop="28369" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="137" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27001" g_stop="26589" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="550" r_length="413" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26588" i_stop="26528" i_length="61">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26527" g_stop="26522" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="556" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E740769" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28437" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26589"/>
          <exon e_start="26527" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAAT</genome_strand>
        <mrna_strand>CTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAAAAA.............................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737475" ref_strand="+" ref_description="SGN-E737475 [LC10AA06]">
      <seq>ttcccctgatgaatacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="27964" stop="26290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="93" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27001" g_stop="26589" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="506" r_length="413" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26588" i_stop="26528" i_length="61">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26527" g_stop="26522" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="512" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E737475" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26589"/>
          <exon e_start="26527" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAAT</genome_strand>
        <mrna_strand>GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAAAAA.............................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282218" ref_strand="+" ref_description="SGN-E282218 [cLES-4-I13]">
      <seq>tttgatgttcctctgaaacattttgtttgtctaacacatccgattattcaggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaacatgcaagtgtttatatattatgtattcaacattttgtactttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="27352" stop="26244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27052" g_stop="26544" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E282218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27052" e_stop="26544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAAT</genome_strand>
        <mrna_strand>TTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368829" ref_strand="+" ref_description="SGN-E368829 [TUS-26-M21](-)">
      <seq>atatggaactaaggaaggaaaattgaggatcctgcaatttgataaatcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaacatgcaagtgtttatatattatgtattcaacattttgtactttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28757" stop="26245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28576" g_stop="28564" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108">
            <donor d_prob="0.793" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28455" g_stop="28369" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="100" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="168" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27001" g_stop="26546" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="624" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="636"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E368829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28576" e_stop="28564"/>
          <exon e_start="28455" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAACTAAGGTAGTTATGCAGACATTGTATGAGTTTCTCATTTTTTGGTTACAACTATAAAATTGTTCATATTCTCAAAAGTATTCGTCTTCTTTTTTTTAACATTAAATTGTGCAGGAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTA</genome_strand>
        <mrna_strand>ATATGGAACTAAG............................................................................................................GAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241876" ref_strand="+" ref_description="SGN-E241876 [cLED-27-O14]">
      <seq>ctagtatatggaactaaggaaggaaaattgaggatcctgcaatttgataaatcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgcttgtttctgcaaaagttgacaattcgttgtattgatatatggcttcaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28881" stop="26374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28581" g_stop="28564" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108">
            <donor d_prob="0.793" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28455" g_stop="28369" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="105" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="173" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27001" g_stop="26674" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="502" r_length="329" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E241876" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28581" e_stop="28564"/>
          <exon e_start="28455" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTATATGGAACTAAGGTAGTTATGCAGACATTGTATGAGTTTCTCATTTTTTGGTTACAACTATAAAATTGTTCATATTCTCAAAAGTATTCGTCTTCTTTTTTTTAACATTAAATTGTGCAGGAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGC-TGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGT</genome_strand>
        <mrna_strand>CTAGTATATGGAACTAAG............................................................................................................GAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTTGTTTCTGCAAAAGTTGACAATTCGTTGTATTGATATATGGCTTCAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606025" ref_strand="+" ref_description="SGN-E606025 [21960]">
      <seq>tgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtatcagtcctagccatggaagctgatcctggtttccatggacaatttcgtcatgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatattccttggaggaggcaaattttggtagggtgcttgcatctcgactaattagagcagctcattgtttgacttcaattcagttttctccaacttctgagcatcttttacttgcctatggacgtcgccatggttcacttctgaaaagtatagtgattgatggagatacaactctacctgtttacactattcttgaggtctatagagtttcagatatggaacttgtgagagttcttcccagtgcagaggatgaggttaacgttgcttgtttccatcctttggttggtggtggcctagtatatggaactaaggaaggaaaattgaggatcctccaatttgataaatcaaatggtttggactgtacaatatcctgttcccctgatgaagacatgcttgaggttccaacatatgctttagaaggctagaaactgttgaagttagcaagatggttactagttgtaaaaatttgggtgttatgaaaatatacatatcaggacaatgactggtggcttcaaagttgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31212" stop="26647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30912" g_stop="30723" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30589" g_stop="30529" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="252" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29912" g_stop="29799" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="366" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="28678" i_length="1121">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28677" g_stop="28564" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="480" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28455" g_stop="28369" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="567" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="638" r_length="71" r_score="0.809"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="0.74"/>
            <acceptor a_prob="0.971" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27001" g_stop="26947" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="693" r_length="55" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E606025" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30912" e_stop="30723"/>
          <exon e_start="30589" e_stop="30529"/>
          <exon e_start="29912" e_stop="29799"/>
          <exon e_start="28677" e_stop="28564"/>
          <exon e_start="28455" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCAT-GGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAAGTAAATACCAATTCTAATGTCTTTGTTCCTTTTCCTCTCTGCTTACACTTGCTACTCTTTTTGTCCTTCATTCTTTGTTTCTTTTCATGTCTTTGTTTGGTGGTCATTTGGGAACTCTATTTCACTGTTGCAGTTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAGGTTAGTACTCCTCGGGCTCTGCACATATTGGTTTATAATCCTAAATTATGTTTTGTGGTAAGATTTTTTGGTTTTCTGGGAGTATGAACTATAGATGGTTTTCTTGTTGTAGCATTTTTGTCTTAATCCTTTGAGGAAGTAAAAGCAAAATATGAATTGTTAGATGAGAACAAAAATGAAGGGGAAGTGCTCTCTCGTTGTTTTGTTTGGATATGAAGTTTAAAACTGGTTGAGCACTTGTTCAATAAGAAATCCTGGGCACAAATATTGATCCTTCCTTTAGAGAGTAGAATTTCTTTTTTTGTTTAAAGTTCCTATGGGTTGGTGTTGTACCTTATCTTGTTTCGTTCACTTCTATACTTCGTTATATTTGATTTTGCTTACTGTTTAATTATAAATGTAGATCGTTCTGTGCATTGTTATTTGCACAAAAAGAACCTACTTTTTCCTGGATAAAGAAATGTGTCTCAAGTGATTTCACTAGTCAAGAGATGTTCACAATGGCAATTTTATGAAATGCACCTTTAAATTGCAGTAATAATTGCTCTTATAGACTGAAATGTTATCTTTCTGATATGGGAAACTGATTGTTGCTCCACATCTATTGAAAATGCAGTTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAGGTGAGTACCTGATTATATCCTGGTTTCTTATGGAATGTCAGTTTTTCACCACCACCAAGACTGGGTCATGGTAGCACACTTCTTATTTTAGAACATCGTGAAAATGATTGACATAATTATATGACATACGGAAGTTTCAAAAGTTTGGTTTTAAACCTGATAAGGTTTTTGTTCTGTCACTTACATTTCTAAGAAGTTCTTCAAATATTTCATTTACTCTTTGCAAACATGCAAGGGTTTTTGACTTCTTAACCTCTGAGCCAATCAATCTAGGTTATGGACAGTTGGTTCTAGAGTCTAGTTAATCACAGAGGGTTAGCCATATAATTCCTTCTGACCCATGTTGTGTCACCCATGTTTCACTATGGTATGTCCATGAAGGTTTGATAATTGATATGGCACGAGAATATGTTGTGCACTATTTACAAATTAGATGAATTTAAATTACATTTCACAACTTTGAAGAATTTACCTTTGATTTCATGCTACTATGTTTTTCTTCTCTTTGTACAGAAAACTCAAATTGCCATTTTCTTCTTCACATCAGTCATCGGTCACATGACATGTTGATTGATCTAATTTAATCTCCTGTACCTGTCAAATAGTATGGCATAAATGGATTGTTGAGGCTATTTTCAATTGCAGTGCAACCAAAAACTAATTTTAGAAGCACAACCTCATTTCCTTATTAAAAAGGGAAGAAGAAGTACAACCTCAACTACTATACGTTGGTCCAAAACAAGTTGGGGTGGGCTAGGCAAAGTGATGCAGGATATGTTTAACTTTAGAAAGACTGGATTTAAGTTGATGAAAATGGGGCTAGATAAACTGGAGCTACTATAGCTTGATATGCAAGTGCAGTGACAATGTGTTTAGGACACTTTTAAGGTTGAAGAGGCCCAATTCAATTAGTTTACTAGTATGTCAAAATAATTTCTTTTGTGTTGATGCACTTTGTTTTTGAACTTCATAAAACTTAAAAAGGGAGAATTATGCTTTCGCTCACATTTTACTGAGATTATTTGGTTGAACCTGCAAGAAGAATGAATTTGGTTTGTTCACAATGTCGGTGTATATATTTGTTTTCTCTAGTTAATTCAGATTGTGAGTCTTTGAATCAGGTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGCAGAGGATGAGGTTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAGGTAGTTATGCAGACATTGTATGAGTTTCTCATTTTTTGGTTACAACTATAAAATTGTTCATATTCTCAAAAGTATTCGTCTTCTTTTTTTTAACATTAAATTGTGCAGGAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGC-AGATGGTT-GTAGTTGT-AAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTG</genome_strand>
        <mrna_strand>TGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATCAGTCCTAGCCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCATGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA.....................................................................................................................................TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCAGCTCATTGTTTGACTTCAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGTTCACTTCTGAAAAGTATAGTGATTGATGGAGATACAACTCTACCTGTTTACACTATTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGAGTTTCAGATATGGAACTTGTGAGAGTTCTTCCCAGTGCAGAGGATGAGGTTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAG............................................................................................................GAAGGAAAATTGAGGATCCTCCAATTTGATAAATCAAATGGTTTGGACTGTACAATATCCTGTTCCCCTGATGAAGACATGCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACATATGCTTTAGAAGGCTAGAAACTGTTGAAGTTAGCAAGATGGTTACTAGTTGTAAAAATTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTATGAAAATATACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244609" ref_strand="+" ref_description="SGN-E244609 [cLED-38-F8]">
      <seq>ttaacgttgcttgtttccatcctttggttggtggtggcctagtatatggaactaaggaaggaaaattgaggatcctgcaatttgataaatcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28919" stop="27332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28619" g_stop="28564" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28455" g_stop="28369" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="143" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27648" g_stop="27632" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="160" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E244609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28619" e_stop="28564"/>
          <exon e_start="28455" e_stop="28369"/>
          <exon e_start="27648" e_stop="27632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAGGTAGTTATGCAGACATTGTATGAGTTTCTCATTTTTTGGTTACAACTATAAAATTGTTCATATTCTCAAAAGTATTCGTCTTCTTTTTTTTAACATTAAATTGTGCAGGAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTT</genome_strand>
        <mrna_strand>TTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAG............................................................................................................GAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302116" ref_strand="+" ref_description="SGN-E302116 [cLEW-19-M18]">
      <seq>tgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatattccttggaggaggcaaattttggtagggtgcttgcatctcgactaattagagctgctcattgtttgacttcaattcagttctctccaacttctgagcatcttttacttgcctatggacgtcgccatggatcacttctgaaaagtattgtgatcgatggagatacaactctacctgtctacactattcttgaggtctatagagtttcggatatggaacttgtgagagttcttcccagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31586" stop="28331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31286" g_stop="31212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30723" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="270" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30589" g_stop="30529" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="331" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29912" g_stop="29799" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="445" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29798" i_stop="28678" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28677" g_stop="28631" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="492" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E302116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31286" e_stop="31212"/>
          <exon e_start="30917" e_stop="30723"/>
          <exon e_start="30589" e_stop="30529"/>
          <exon e_start="29912" e_stop="29799"/>
          <exon e_start="28677" e_stop="28631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAAGTAAATACCAATTCTAATGTCTTTGTTCCTTTTCCTCTCTGCTTACACTTGCTACTCTTTTTGTCCTTCATTCTTTGTTTCTTTTCATGTCTTTGTTTGGTGGTCATTTGGGAACTCTATTTCACTGTTGCAGTTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAGGTTAGTACTCCTCGGGCTCTGCACATATTGGTTTATAATCCTAAATTATGTTTTGTGGTAAGATTTTTTGGTTTTCTGGGAGTATGAACTATAGATGGTTTTCTTGTTGTAGCATTTTTGTCTTAATCCTTTGAGGAAGTAAAAGCAAAATATGAATTGTTAGATGAGAACAAAAATGAAGGGGAAGTGCTCTCTCGTTGTTTTGTTTGGATATGAAGTTTAAAACTGGTTGAGCACTTGTTCAATAAGAAATCCTGGGCACAAATATTGATCCTTCCTTTAGAGAGTAGAATTTCTTTTTTTGTTTAAAGTTCCTATGGGTTGGTGTTGTACCTTATCTTGTTTCGTTCACTTCTATACTTCGTTATATTTGATTTTGCTTACTGTTTAATTATAAATGTAGATCGTTCTGTGCATTGTTATTTGCACAAAAAGAACCTACTTTTTCCTGGATAAAGAAATGTGTCTCAAGTGATTTCACTAGTCAAGAGATGTTCACAATGGCAATTTTATGAAATGCACCTTTAAATTGCAGTAATAATTGCTCTTATAGACTGAAATGTTATCTTTCTGATATGGGAAACTGATTGTTGCTCCACATCTATTGAAAATGCAGTTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAGGTGAGTACCTGATTATATCCTGGTTTCTTATGGAATGTCAGTTTTTCACCACCACCAAGACTGGGTCATGGTAGCACACTTCTTATTTTAGAACATCGTGAAAATGATTGACATAATTATATGACATACGGAAGTTTCAAAAGTTTGGTTTTAAACCTGATAAGGTTTTTGTTCTGTCACTTACATTTCTAAGAAGTTCTTCAAATATTTCATTTACTCTTTGCAAACATGCAAGGGTTTTTGACTTCTTAACCTCTGAGCCAATCAATCTAGGTTATGGACAGTTGGTTCTAGAGTCTAGTTAATCACAGAGGGTTAGCCATATAATTCCTTCTGACCCATGTTGTGTCACCCATGTTTCACTATGGTATGTCCATGAAGGTTTGATAATTGATATGGCACGAGAATATGTTGTGCACTATTTACAAATTAGATGAATTTAAATTACATTTCACAACTTTGAAGAATTTACCTTTGATTTCATGCTACTATGTTTTTCTTCTCTTTGTACAGAAAACTCAAATTGCCATTTTCTTCTTCACATCAGTCATCGGTCACATGACATGTTGATTGATCTAATTTAATCTCCTGTACCTGTCAAATAGTATGGCATAAATGGATTGTTGAGGCTATTTTCAATTGCAGTGCAACCAAAAACTAATTTTAGAAGCACAACCTCATTTCCTTATTAAAAAGGGAAGAAGAAGTACAACCTCAACTACTATACGTTGGTCCAAAACAAGTTGGGGTGGGCTAGGCAAAGTGATGCAGGATATGTTTAACTTTAGAAAGACTGGATTTAAGTTGATGAAAATGGGGCTAGATAAACTGGAGCTACTATAGCTTGATATGCAAGTGCAGTGACAATGTGTTTAGGACACTTTTAAGGTTGAAGAGGCCCAATTCAATTAGTTTACTAGTATGTCAAAATAATTTCTTTTGTGTTGATGCACTTTGTTTTTGAACTTCATAAAACTTAAAAAGGGAGAATTATGCTTTCGCTCACATTTTACTGAGATTATTTGGTTGAACCTGCAAGAAGAATGAATTTGGTTTGTTCACAATGTCGGTGTATATATTTGTTTTCTCTAGTTAATTCAGATTGTGAGTCTTTGAATCAGGTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGC</genome_strand>
        <mrna_strand>TGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA.....................................................................................................................................TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245469" ref_strand="+" ref_description="SGN-E245469 [cLEF-43-M1]">
      <seq>gaaatgggtgcccacttttcaccatgtggaagaatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatattccttggaggaggcaaattttggtagggtgcttgcatctcgactaattagagctgctcattgtttgacttcaattcagttctctccaacttctgagcatcttttacttgcctatggacgtcgccatggatcacttctgaaaagtattgtgatcgatggagatacaactctacctgtctacactattcttgaggtctatagagtttcggatatggaacttgtgagagttcttcccagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31216" stop="28331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30916" g_stop="30723" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30589" g_stop="30529" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="256" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29912" g_stop="29799" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="370" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29798" i_stop="28678" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28677" g_stop="28631" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="417" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E245469" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30916" e_stop="30723"/>
          <exon e_start="30589" e_stop="30529"/>
          <exon e_start="29912" e_stop="29799"/>
          <exon e_start="28677" e_stop="28631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGGTGCCCACTTTTCACCATGTGGAAG-ATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAAGTAAATACCAATTCTAATGTCTTTGTTCCTTTTCCTCTCTGCTTACACTTGCTACTCTTTTTGTCCTTCATTCTTTGTTTCTTTTCATGTCTTTGTTTGGTGGTCATTTGGGAACTCTATTTCACTGTTGCAGTTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAGGTTAGTACTCCTCGGGCTCTGCACATATTGGTTTATAATCCTAAATTATGTTTTGTGGTAAGATTTTTTGGTTTTCTGGGAGTATGAACTATAGATGGTTTTCTTGTTGTAGCATTTTTGTCTTAATCCTTTGAGGAAGTAAAAGCAAAATATGAATTGTTAGATGAGAACAAAAATGAAGGGGAAGTGCTCTCTCGTTGTTTTGTTTGGATATGAAGTTTAAAACTGGTTGAGCACTTGTTCAATAAGAAATCCTGGGCACAAATATTGATCCTTCCTTTAGAGAGTAGAATTTCTTTTTTTGTTTAAAGTTCCTATGGGTTGGTGTTGTACCTTATCTTGTTTCGTTCACTTCTATACTTCGTTATATTTGATTTTGCTTACTGTTTAATTATAAATGTAGATCGTTCTGTGCATTGTTATTTGCACAAAAAGAACCTACTTTTTCCTGGATAAAGAAATGTGTCTCAAGTGATTTCACTAGTCAAGAGATGTTCACAATGGCAATTTTATGAAATGCACCTTTAAATTGCAGTAATAATTGCTCTTATAGACTGAAATGTTATCTTTCTGATATGGGAAACTGATTGTTGCTCCACATCTATTGAAAATGCAGTTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAGGTGAGTACCTGATTATATCCTGGTTTCTTATGGAATGTCAGTTTTTCACCACCACCAAGACTGGGTCATGGTAGCACACTTCTTATTTTAGAACATCGTGAAAATGATTGACATAATTATATGACATACGGAAGTTTCAAAAGTTTGGTTTTAAACCTGATAAGGTTTTTGTTCTGTCACTTACATTTCTAAGAAGTTCTTCAAATATTTCATTTACTCTTTGCAAACATGCAAGGGTTTTTGACTTCTTAACCTCTGAGCCAATCAATCTAGGTTATGGACAGTTGGTTCTAGAGTCTAGTTAATCACAGAGGGTTAGCCATATAATTCCTTCTGACCCATGTTGTGTCACCCATGTTTCACTATGGTATGTCCATGAAGGTTTGATAATTGATATGGCACGAGAATATGTTGTGCACTATTTACAAATTAGATGAATTTAAATTACATTTCACAACTTTGAAGAATTTACCTTTGATTTCATGCTACTATGTTTTTCTTCTCTTTGTACAGAAAACTCAAATTGCCATTTTCTTCTTCACATCAGTCATCGGTCACATGACATGTTGATTGATCTAATTTAATCTCCTGTACCTGTCAAATAGTATGGCATAAATGGATTGTTGAGGCTATTTTCAATTGCAGTGCAACCAAAAACTAATTTTAGAAGCACAACCTCATTTCCTTATTAAAAAGGGAAGAAGAAGTACAACCTCAACTACTATACGTTGGTCCAAAACAAGTTGGGGTGGGCTAGGCAAAGTGATGCAGGATATGTTTAACTTTAGAAAGACTGGATTTAAGTTGATGAAAATGGGGCTAGATAAACTGGAGCTACTATAGCTTGATATGCAAGTGCAGTGACAATGTGTTTAGGACACTTTTAAGGTTGAAGAGGCCCAATTCAATTAGTTTACTAGTATGTCAAAATAATTTCTTTTGTGTTGATGCACTTTGTTTTTGAACTTCATAAAACTTAAAAAGGGAGAATTATGCTTTCGCTCACATTTTACTGAGATTATTTGGTTGAACCTGCAAGAAGAATGAATTTGGTTTGTTCACAATGTCGGTGTATATATTTGTTTTCTCTAGTTAATTCAGATTGTGAGTCTTTGAATCAGGTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGC</genome_strand>
        <mrna_strand>GAAATGGGTGCCCACTTTTCACCATGTGGAAGAATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA.....................................................................................................................................TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368830" ref_strand="+" ref_description="SGN-E368830 [TUS-26-M21]">
      <seq>agttccgtccatcatttcaaacggtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtcggttccagtcagagatagctacttccctgactgcagcagcttcttctgaattaccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatattccttggaggaggcaaattttggtagggtgcttgcatctcgactaattagagctgctcattgtttgacttcaattcagttctctccaacttctgagcatcttttacttgcctatggacgtcgccatggatcacttctgtaaagtattgtgatcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31835" stop="29533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31212" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30723" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="519" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30589" g_stop="30529" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="580" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29912" g_stop="29833" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="660" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E368830" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31212"/>
          <exon e_start="30917" e_stop="30723"/>
          <exon e_start="30589" e_stop="30529"/>
          <exon e_start="29912" e_stop="29833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAAGTAAATACCAATTCTAATGTCTTTGTTCCTTTTCCTCTCTGCTTACACTTGCTACTCTTTTTGTCCTTCATTCTTTGTTTCTTTTCATGTCTTTGTTTGGTGGTCATTTGGGAACTCTATTTCACTGTTGCAGTTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAGGTTAGTACTCCTCGGGCTCTGCACATATTGGTTTATAATCCTAAATTATGTTTTGTGGTAAGATTTTTTGGTTTTCTGGGAGTATGAACTATAGATGGTTTTCTTGTTGTAGCATTTTTGTCTTAATCCTTTGAGGAAGTAAAAGCAAAATATGAATTGTTAGATGAGAACAAAAATGAAGGGGAAGTGCTCTCTCGTTGTTTTGTTTGGATATGAAGTTTAAAACTGGTTGAGCACTTGTTCAATAAGAAATCCTGGGCACAAATATTGATCCTTCCTTTAGAGAGTAGAATTTCTTTTTTTGTTTAAAGTTCCTATGGGTTGGTGTTGTACCTTATCTTGTTTCGTTCACTTCTATACTTCGTTATATTTGATTTTGCTTACTGTTTAATTATAAATGTAGATCGTTCTGTGCATTGTTATTTGCACAAAAAGAACCTACTTTTTCCTGGATAAAGAAATGTGTCTCAAGTGATTTCACTAGTCAAGAGATGTTCACAATGGCAATTTTATGAAATGCACCTTTAAATTGCAGTAATAATTGCTCTTATAGACTGAAATGTTATCTTTCTGATATGGGAAACTGATTGTTGCTCCACATCTATTGAAAATGCAGTTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGG</genome_strand>
        <mrna_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA.....................................................................................................................................TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGTAAAGTATTGTGATCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259469" ref_strand="+" ref_description="SGN-E259469 [cLEG-42-K3]">
      <seq>agttccgtccatcatttcaaacggtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtcggttccagtcagagatagctacttccctgactgcagcagcttcttctgaattaccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatattccttggaggaggcaaattttggtagggtgcttgcatctcgactaattagagctgctcattgtttgacttcaattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31835" stop="30229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31212" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30723" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="519" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30589" g_stop="30529" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="580" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E259469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31212"/>
          <exon e_start="30917" e_stop="30723"/>
          <exon e_start="30589" e_stop="30529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAAGTAAATACCAATTCTAATGTCTTTGTTCCTTTTCCTCTCTGCTTACACTTGCTACTCTTTTTGTCCTTCATTCTTTGTTTCTTTTCATGTCTTTGTTTGGTGGTCATTTGGGAACTCTATTTCACTGTTGCAGTTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG</genome_strand>
        <mrna_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA.....................................................................................................................................TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251124" ref_strand="+" ref_description="SGN-E251124 [cLEG-10-E13]">
      <seq>agttccgtccattatttcaaactgtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtcggttccagtcagagatagctacttccctgactgcagcagcttcttctgaattaccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatattccttggaggaggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31835" stop="30423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31212" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30723" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="519" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E251124" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31212"/>
          <exon e_start="30917" e_stop="30723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA</genome_strand>
        <mrna_strand>AGTTCCGTCCATTATTTCAAACTGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256041" ref_strand="+" ref_description="SGN-E256041 [cLEG-35-P21]">
      <seq>agttccgtccatcatttcaaacggtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtcggttccagtcagagatagctacttccctgactgcagcagcttcttctgaattaccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31835" stop="30440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31212" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30740" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="502" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E256041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31212"/>
          <exon e_start="30917" e_stop="30740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATAT</genome_strand>
        <mrna_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256040" ref_strand="+" ref_description="SGN-E256040 [cLEG-35-P9]">
      <seq>agttccgtccatcatttcaaacggtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtcggttccagtcagagatagctacttccctgactgcagcagcttcttctgaattaccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31835" stop="30441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31212" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30741" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="501" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E256040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31212"/>
          <exon e_start="30917" e_stop="30741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATA</genome_strand>
        <mrna_strand>AGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201006" ref_strand="+" ref_description="SGN-E201006 [cLEC-5-I18]">
      <seq>tcatttcaaacggtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtcggttccagtcagagatagctacttccctgactgcagcagcttcttctgaattaccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatgggaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31824" stop="30536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31524" g_stop="31212" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30836" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="396" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E201006" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31524" e_stop="31212"/>
          <exon e_start="30917" e_stop="30836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCAT-GGAAGCTGAT</genome_strand>
        <mrna_strand>TCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGGAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442571" ref_strand="+" ref_description="SGN-E442571 [cSTA-34-C21]">
      <seq>taccattcttgcaaggatggttgattggccaaagccaagctggccgacgatcgattcattctgagcatagtggtgccacgaacattgtatcagcttatggtgaagtagaacatcctcctgcagttccgtctatcatttcaaacagtaatcatccaaggtctggaagatctggttctaggcaccgttcttcacgctctcgagcaatacctgttgctggatctggcgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagcttttatgagtcggttccagtcagagatagctacttccctgactgctgcagcggcttccgaattgccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttagttataccacatgctgtcctctgtagtgaaatgggtgcccactcttcaccatgtggaagattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31956" stop="30578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31656" g_stop="31212" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="0.96"/>
            <acceptor a_prob="0.723" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30878" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="485" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E442571" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31656" e_stop="31212"/>
          <exon e_start="30917" e_stop="30878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTA</genome_strand>
        <mrna_strand>TACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCTGGCCGACGATCGATTCATTCTGAGCATAGTGGTGCCACGAACATTGTATCAGCTTATGGTGAAGTAGAACATCCTCCTGCAGTTCCGTCTATCATTTCAAACAGTAATCATCCAAGGTCTGGAAGATCTGGTTCTAGGCACCGTTCTTCACGCTCTCGAGCAATACCTGTTGCTGGATCTGGCGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTTTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCTGCAGCGGCTTCCGAATTGCCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAGTTATACCACATGCTGTCCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTCTTCACCATGTGGAAGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442576" ref_strand="+" ref_description="SGN-E442576 [cSTA-34-E13]">
      <seq>taccattcttgcaaggatggttgattggccaaagccaagctggccgacgatcgattcattctgagcatagtggtgccacgaacattgtatcagcttatggtgaagtagaacatcctcctgcagttccgtctatcatttcaaacagtaatcatccaaggtctggaagatctggttctaggcaccgttcttcacgctctcgagcaatacctgttgctggatctggcgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagcttttatgagtcggttccagtcagagatagctacttccctgactgctgcagcggcttccgaattgccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttagttataccacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="31956" stop="30923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31656" g_stop="31223" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E442576" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31656" e_stop="31223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCT</genome_strand>
        <mrna_strand>TACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCTGGCCGACGATCGATTCATTCTGAGCATAGTGGTGCCACGAACATTGTATCAGCTTATGGTGAAGTAGAACATCCTCCTGCAGTTCCGTCTATCATTTCAAACAGTAATCATCCAAGGTCTGGAAGATCTGGTTCTAGGCACCGTTCTTCACGCTCTCGAGCAATACCTGTTGCTGGATCTGGCGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTTTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCTGCAGCGGCTTCCGAATTGCCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAGTTATACCACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245721" ref_strand="+" ref_description="SGN-E245721 [cLEF-48-G22]">
      <seq>tcgtgccgaattcggcacgagagcagagtaatgcagacatgggttctgacagtacacagaacagagcagacacttctgcctctgtcagacttctcacttactcaactccttctggccagtatgaacttttattgtcccctgttgagccaactttatctcctgcgcaagaagctcagactagttcctctgttagggatacagagaatgcatctaaccctgttggtgatcctatggagactgatgcgccgactgaggagagaaacaatcagttttttcctttcagtgaccctgcgtactgggacttaccattcttgcaaggatggttgattggccaaagccaagcaggccgacaagcgattcattctgagcatagtggtgccacaaacattgtatcagcttatggtgaagtagaacatcgtcctgcagttccgtccatcatttcaaacggtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="32238" stop="31072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31936" g_stop="31372" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="588" r_length="565" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E245721" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31936" e_stop="31372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTAATGCAGACATGGGTTCTGACAGTACACAGAACAGAGCAGACACTTCTGCCTCTGTCAGACTTCTCACTTACTCAACTCCTTCTGGCCAGTATGAACTTTTATTGTCCCCTGTTGAGCCAACTTTATCTCCTGCGCAAGAAGCTCAGACTAGTTCCTCTGTTAGGGATACAGAGAATGCATCTAACCCTGTTGGTGATCCTATGGAGACTGATGCGCCGACTGAGGAGAGAAACAATCAGTTTTTTCCTTTCAGTGACCCTGCATACTGGGACTTACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTC</genome_strand>
        <mrna_strand>CAGAGTAATGCAGACATGGGTTCTGACAGTACACAGAACAGAGCAGACACTTCTGCCTCTGTCAGACTTCTCACTTACTCAACTCCTTCTGGCCAGTATGAACTTTTATTGTCCCCTGTTGAGCCAACTTTATCTCCTGCGCAAGAAGCTCAGACTAGTTCCTCTGTTAGGGATACAGAGAATGCATCTAACCCTGTTGGTGATCCTATGGAGACTGATGCGCCGACTGAGGAGAGAAACAATCAGTTTTTTCCTTTCAGTGACCCTGCGTACTGGGACTTACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722548" ref_strand="+" ref_description="SGN-E722548 [FC17CD06]">
      <seq>ttttcccctaaatttctttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccaattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagacatttttcagctaagtattgtccactgttgcctccgcctaggtctacaattgctgcggcattcagtcctgatgggaagacacttgcttctactcatggagatcacacagtaaagataattgactgccaaagcgggaaatgcttgaaggtgttaagtgaacatcgcaggactccttgggtggttcgtttccatccactctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35402" stop="32365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35102" g_stop="34754" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="511" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33570" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="628" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33569" i_stop="33269" i_length="301">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33268" g_stop="33184" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="713" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33183" i_stop="32689" i_length="495">
            <donor d_prob="0.715" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32688" g_stop="32665" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="737" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E722548" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35102" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33570"/>
          <exon e_start="33268" e_stop="33184"/>
          <exon e_start="32688" e_stop="32665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCAGTCAGTCTCTCTTTTAATACATCGACATGTACAATCTGTTATGTTATGCATTGTAGTGTCTCGCTGCTCAGATCTGAAATTGTTTATCTAACAATATCTTTTGAGTCCAAGTATTCATTATACACACATTTCTAAATCCTCAGTGACTATATTCATATCATAAAAAAGGAAAAAAAATGCAATCCGTTGTCAATATTCATGAATTGAGAACAAAGGCAAACATTCCACTTTTTCCGTGCTGTCCATTTTTTCTTTTGGCTTGTATCTAGTTCGTTGACGTATTCTGTTACCATGGTGTCAGTGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGGACATCGCAGGACTCCTTGGGTGGTAAGACTGTTTTGACATCTTCAGTCATCTTAAACAGTTGTGCTGAATTCTTGGATTATCTACTTGGGAAATATATTCCAGTCCACTAGGCAATTAAAATGCTGAGATTTTGGATTGACAATATAGTTGGCTTTACAAAATGTCGAAGTATTATATTCTTTTAACTTAATGCTTATTGATGTTCTTCTAAGATGGCTAAACTATCTTATTTGGTTAAAATATTAATGCAGATAAATGATTGGTATCTATCTAAAAAATAGAGAGATAAATGTTTGATGTGTGCTCACAGGTCTAAGCCTAATTCATTTCATTTGAACCTCACACTTATGGAAGAGGATTGAACTTTATGAAGCTTTTTTCTGTTGTCTGTAGTTCTATTTTGAAAGCCTCTGGTGTTTTTTTTTTCCACACGTCTTGGCTGTATTGATATTTCTTCTCTTGCCTTTGAATCTCATTCCTCAATTATATTTAGCATTATGGTTGGGACTTCTGCAGGTTCGTTTCCATCCACTCTACTCT</genome_strand>
        <mrna_strand>TTTTCCCCTAAATTTCTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCAATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCA.............................................................................................................................................................................................................................................................................................................TGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGAACATCGCAGGACTCCTTGGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTTTCCATCCACTCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735945" ref_strand="+" ref_description="SGN-E735945 [LC03DB07]">
      <seq>caataccttccgtcgtcttcttcatttttctcattttcccctaaatttttttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagacatttttcagctaagtattgtccactgttgcctccgcctaggtctacaattgctgcggcattcagtcctgatgggaagacacttgcttctactcatggagatcacacagtaaagataattgactgccaaagcgggaaatgcttgaaggtgttaagtggacctcgcaggactccttgggtggttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35434" stop="32882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35135" g_stop="34754" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="544" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33570" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="661" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33569" i_stop="33269" i_length="301">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33268" g_stop="33179" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="751" r_length="90" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E735945" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35135" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33570"/>
          <exon e_start="33268" e_stop="33179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCAGTCAGTCTCTCTTTTAATACATCGACATGTACAATCTGTTATGTTATGCATTGTAGTGTCTCGCTGCTCAGATCTGAAATTGTTTATCTAACAATATCTTTTGAGTCCAAGTATTCATTATACACACATTTCTAAATCCTCAGTGACTATATTCATATCATAAAAAAGGAAAAAAAATGCAATCCGTTGTCAATATTCATGAATTGAGAACAAAGGCAAACATTCCACTTTTTCCGTGCTGTCCATTTTTTCTTTTGGCTTGTATCTAGTTCGTTGACGTATTCTGTTACCATGGTGTCAGTGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGGACATCGCAGGACTCCTTGGGTGGTAAG</genome_strand>
        <mrna_strand>CAATACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCA.............................................................................................................................................................................................................................................................................................................TGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGGACCTCGCAGGACTCCTTGGGTGGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331447" ref_strand="+" ref_description="SGN-E331447 [cTOD-9-J8]">
      <seq>ttcatttttctcattttcccctaaatttttttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagacatttttcagctaagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35415" stop="33345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35115" g_stop="34754" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="524" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33645" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="566" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E331447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35115" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTG</genome_strand>
        <mrna_strand>TTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738318" ref_strand="+" ref_description="SGN-E738318 [LC13AH08]">
      <seq>cattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35299" stop="33602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34999" g_stop="34754" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33902" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="290" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E738318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34999" e_stop="34754"/>
          <exon e_start="33945" e_stop="33902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</genome_strand>
        <mrna_strand>CATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735689" ref_strand="+" ref_description="SGN-E735689 [LC02CE02]">
      <seq>attttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35298" stop="33602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34998" g_stop="34754" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33902" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="289" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E735689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34998" e_stop="34754"/>
          <exon e_start="33945" e_stop="33902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</genome_strand>
        <mrna_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736975" ref_strand="+" ref_description="SGN-E736975 [LC08AA06]">
      <seq>attttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35298" stop="33602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34998" g_stop="34754" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33902" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="289" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E736975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34998" e_stop="34754"/>
          <exon e_start="33945" e_stop="33902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</genome_strand>
        <mrna_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738105" ref_strand="+" ref_description="SGN-E738105 [LC12BF01]">
      <seq>attttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35298" stop="33602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34998" g_stop="34754" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33902" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="289" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E738105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34998" e_stop="34754"/>
          <exon e_start="33945" e_stop="33902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</genome_strand>
        <mrna_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740163" ref_strand="+" ref_description="SGN-E740163 [LC20BD06]">
      <seq>attttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35298" stop="33602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34998" g_stop="34754" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33902" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="289" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E740163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34998" e_stop="34754"/>
          <exon e_start="33945" e_stop="33902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</genome_strand>
        <mrna_strand>ATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445779" ref_strand="+" ref_description="SGN-E445779 [cSTA-18-F13]">
      <seq>aacttccgtcgtcgtcttcatttttctcattttcccctaattttttttctcttcccattttacccttctgcaagatctcttaatcctccatccctctatattttccggtgtaaatttccaccatattcaagggcatttgcggataatttaatcgatttctttttatttcgccggagaagttccattggaaatgacgggaaatatcggggcatgaggtattcgcttgtggggatagaattatgaggggatctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35431" stop="34579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35131" g_stop="34879" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E445779" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35131" e_stop="34879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAA-TTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTT</genome_strand>
        <mrna_strand>AACTTCCGTCGTCGTCTTCATTTTTCTCATTTTCCCCTAATTTTTTTTCTCTTCCCATTTTACCCTTCTGCAAGATCTCTTAATCCTCCATCCCTCTATATTTTCCGGTGTAAATTTCCACCATATTCAAGGGCATTTGCGGATAATTTAATCGATTTCTTTTTATTTCGCCGGAGAAGTTCCATTGGAAATGACGGGAAATATCGGGGCATGAGGTATTCGCTTGTGGGGATAGAATTATGAGGGGATCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="40239" stop="39344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39939" g_stop="39618" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39939" e_stop="39618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-CTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTGGAGATAACTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATGTACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="40239" stop="39344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39939" g_stop="39649" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39939" e_stop="39649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-CTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTGGAGATAACTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATGTACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567506" ref_strand="+" ref_description="SGN-E567506 [11642]">
      <seq>cacaattctaactcctccttctccattttctccatcaatttggtgaacagaaaaaaataaagaaaatcatcattttaatctgaaaaaaaattaatattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtacaaaaaacaggaactgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcggccggatttattagcgtgtcaagcgttgatggaagctcaggtagatgaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggagttccgggtgtttgttcatgattgcgtttggatagtgtgaccaatggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41220" stop="42331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41520" g_stop="42031" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E567506" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.047" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41520" e_stop="42031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCC-GGTGTTTGTT-ATGA-TGCCGTTGGATAGTGTGA-AAACGGATCAT</genome_strand>
        <mrna_strand>CACAATTCTAACTCCTCCTTCTCCA-TTTTCTCCATCAATTTGGTGAA-----C--AGAAAAAAA-TAAAGAAAA-TCATCA-TTTTAATCTG-----AAAAAAA--A--T-T-A-A-TATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTACAAAAAACAGGAACTGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGGCCGGATTTAT---TAGCGTGTCAAGCGTTGATGGAAGCTCAGGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGAGTTCCGGGTGTTTGTTCATGATTGCGTTTGGATAGTGTGACCAATGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479901" ref_strand="+" ref_description="SGN-E479901 [cSTD-11-F14]">
      <seq>cacaattctaactcctccttctccattttctccatcaatttggtgaacagaaaaaaataaaaaaatcatcattttaatctgaaaaaaaattaatattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtacaaaaaacaggaactgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcggccggatttattagcgtgtcaagcgttgatggaagctcaggtagatgaggtagttgagagagaatataaggttaggaattcgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41220" stop="42268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41520" g_stop="41968" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E479901" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.067" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41520" e_stop="41968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCG</genome_strand>
        <mrna_strand>CACAATTCTAACTCCTCCTTCTCCA-TTTTCTCCATCAATTTGGTGAA-----C--AGAAAAAAA-T-AAAAAAA-TCATCA-TTTTAATCTG-----AAAAAAA--A--T-TAATA-T--TATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTACAAAAAACAGGAACTGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGGCCGGATTTAT---TAGCGTGTCAAGCGTTGATGGAAGCTCAGGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537390" ref_strand="+" ref_description="SGN-E537390 [letfr53]">
      <seq>aaaaaaaaaaattaaaaaaattcatcatttttaatctgcaaaaaaaaaaattagttataatattattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtgcaaaaaacaggaaatgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcgaccggatttatcggtagcgtgtcaagcgttgatggaggctcaggtagaggaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggtgttccggtgtttgttatgatgccgttggatagtgtgaaaacggatcatactgtgaatagaaaaaaggcgatgaatgcgagtttacaggcgttgaaaagcgccggtgtggaagggattatgatggatgtgtggtggggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41274" stop="42423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41574" g_stop="42123" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E537390" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41574" e_stop="42123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATT</genome_strand>
        <mrna_strand>AAAAAAAAAAATTAAAA-AAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333490" ref_strand="+" ref_description="SGN-E333490 [cTOD-20-L11]">
      <seq>ttataatattattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtgcaaaaaacaggaaatgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcgaccggatttatcggtagcgtgtcaagcgttgatggaggctcaggtagaggaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggtgttccggtgtttgttatgatgccgttggatagtgtgaaaacggatcatactgtgaatagaaaaaaggcgatgaatgcgagtttacaggcgttgaaaagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcaccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaacatggactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41329" stop="42504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41629" g_stop="42204" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E333490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41629" e_stop="42204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAA</genome_strand>
        <mrna_strand>TTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCG-AAAAACATGGACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726026" ref_strand="-" ref_description="SGN-E726026 [LA10AD02]">
      <seq>aacgccacctgcctaaccactttctcaggtgcacattgtgcatcttgtggctgctcgtggtcacgcatttcaacacctgtaaactcgcattcatcgccttttttctattcacagtatgatccgttttcacactatccaacggcatcataacaaacaccggaacacctttctctttctccgacgaattcctaaccttatattctctctcaactacctcctctacctgagcctccatcaacgcttgacacgctaccgataaatccggtcgcattcctcctcccatcatcggactcatcggcggcgacggcgacggcgacaccctgtcaatttcatttcctgttttttgcaccgatacttttaaattcgtcatcggtgttctccacatagctgatgtagctgaactccccttcgccggaacttcgcatgaaactccaccggtttccgccgtgagcgatgttcctgataaggcaccgatctggtgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="44153" stop="41362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43853" g_stop="43776" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43775" i_stop="42069" i_length="1707">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42068" g_stop="41662" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="485" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E726026" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726026" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43853" e_stop="43776"/>
          <exon e_start="42068" e_stop="41662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGAGTGTTGTAGTATCCAGCAGTCAACTCAGGGGCATGGGACCTTGTTCCATAGTGCCAGTGGATACCTGCAATCTTAACTGAAATCTTCACACCTTTGTCCTCGAATATCGCCTTGGATGATTGCAGTATCCTCTCGCCATGGTTCAAAAGCATTTGAGAATACCAAGTGAGGAAGAACTCCCCGTATTGACTATCCCATCCACCACCTTCCTTCTTGAAAAAGTTTGTATCTTCTGGCCAATTGTTGTACTCACCAGCATCGGTTGGACCGGTGTGTCCCCATTCAGGCTTACCAAATGCTTCCGCTGCACCCTGTAAGCTACCGATCATGTACTGCAACGCGATACAATACATTTAACAGAACAAATCATCAGTAATAATGACGACGTTAAACACTAAAACACACCATAGAAAACAGAACTTGCTTTATACCTTATCATAACACTGAAAAGCACCGATTCCAGGGAACTTCCATATTCCATCTTTTTCGGGATAGGATGGATAACGGAGCTCACCAGCTGGACCCATCCCGACTTGAATTTCCTATATCACACGTCATTTGGATTAAAAAAGTGAGTCTTCTACTCTTCGATCAAAAATTCGAAAAAAACATAGCACTTACCACAATGGTATCACCTAAGAGATTCTCAAATCTATCTCTAAACCCTCTCATGAAATCAGAATAGCATTGAACAGGAGTCCTTCCTTTAAGAACTGGAAGTGTATCGCAACCAAGCGATACATATTCAAAATTCCTCCTTCCCCACTGATCTGTGTATGCAAGATCTGGATCCTTCTCCATCTCCTCAACAACCCACCTCGGAAGAGGGATCCTGAAATTTCAAAAATCTACTTAAGCAACGCCTATACATCGCGATTAGTAGAAATCAAAACGCATAACAGAACTCGAATGAAAATTAAACAAAGATAATTGAATTATTCATGAATCTTCCATATTCCATTTTATGCTATTCAGGTTGATTCCAATCTATTATAAAGTCATTTATCTTTCCAGATAAAATATAGTTACTTTAAATAGTTCATTTAGCACACATATAAAGGAGCATATTCTCACTATCCACTAACCTTTTTTTGAACTTTCTTCTTTAATCTTTTCCAGATCCTATGAATCTTTTATCTAAAAGTATTTGTTGAAGAGATTTACCACCTCGACGAGGAATGATATCTCTCCACTCGTTTCGAGCAATGCTTCTCCCTTTTAAGTTAGCTTTTTGTGAGGTTAAACTACGATAAAATACTAATTTGACATGTTATGATAGTCAGGCCACATCCGATGTGAAAATATCTCGAATTAGCTTTTGAGATGCGAGTTATATCATGTTTGATTTGACGGTATTCATTATAACAGATCTAGATTTTGAATCTGGTAATCACAAATTTGCAGTTAAAACGAATTAAAAATAGCATCGGAGAAAATATACATACGTGCAGGAATCACCGACGTTACCACCGCATTGATGGAAAGACATCACAGCTTGAACTTTGAGTCCATGTTTTTTCGCCATTTCCATAAGCTCAGCATAACCGCCCCAATTATACTCTCCCGGTGCATCTCTCTCCACCAATCCCCACCACACATCCATCATAATCCCTTCCACACCGGCGCTTTTCAACGCCTGTAAACTCGCATTCATCGCCTTTTTTCTATTCACAGTATGATCCGTTTTCACACTATCCAACGGCATCATAACAAACACCGGAACACCTTTCTCTTTCTCCGACGAATTCCTAACCTTATATTCTCTCTCAACTACCTCCTCTACCTGAGCCTCCATCAACGCTTGACACGCTACCGATAAATCCGGTCGCATTCCTCCTCCCATCATCGGACTCATCGGCGGCGACGGCGACGGCGACACCCTGTCAATTTCATTTCCTGTTTTTTGCACCGATACTTTTAAATTCGTCATCGGTGTTCTCCACATAGCTGATGTAGCTGAACTCCCCTTCGCCGGAACTTCGCATGAAACTCCACCGGTTTCCGCCGTGAGCGATGTTCCTGATAAGGCACCGATCTGGTGTGGC</genome_strand>
        <mrna_strand>AACGCCACCTGCCTAACCACTTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTCGCATTCATCGCCTTTTTTCTATTCACAGTATGATCCGTTTTCACACTATCCAACGGCATCATAACAAACACCGGAACACCTTTCTCTTTCTCCGACGAATTCCTAACCTTATATTCTCTCTCAACTACCTCCTCTACCTGAGCCTCCATCAACGCTTGACACGCTACCGATAAATCCGGTCGCATTCCTCCTCCCATCATCGGACTCATCGGCGGCGACGGCGACGGCGACACCCTGTCAATTTCATTTCCTGTTTTTTGCACCGATACTTTTAAATTCGTCATCGGTGTTCTCCACATAGCTGATGTAGCTGAACTCCCCTTCGCCGGAACTTCGCATGAAACTCCACCGGTTTCCGCCGTGAGCGATGTTCCTGATAAGGCACCGATCTGGTGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469446" ref_strand="+" ref_description="SGN-E469446 [cSTB-11-B18]">
      <seq>gatgatgggaggaggaatgcggccggatttattagcgtgtcaagcgttgatggaagctcaagtagatgaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggagttccggtgtttgttatgatgccgttggatagtgtgaaaatggatcatactgtgaataggaagaaggcgatgaatgcgagtttacaggcgttgaagagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcccaatgtgcacctgagaagttggttaggcaagtggcattagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41560" stop="44266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41860" g_stop="42138" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="43750" i_length="1612">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43751" g_stop="43966" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="492" r_length="216" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E469446" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41860" e_stop="42138"/>
          <exon e_start="43751" e_stop="43966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAAT</genome_strand>
        <mrna_strand>GATGATGGGAGGAGGAATGCGGCCGGATTTAT---TAGCGTGTCAAGCGTTGATGGAAGCTCAAGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGAGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAATGGATCATACTGTGAATAGGAAGAAGGCGATGAATGCGAGTTTACAGGCGTTGAAGAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCCCAATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCATTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472709" ref_strand="+" ref_description="SGN-E472709 [cSTB-29-L13]">
      <seq>cgttgatggaagctcaggtagatgaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggagttccggtgtttgttatgatgccgttggatagtgtgaaaatggatcatactgtgaataggaagaaggcgatgaatgcgagtttacaggcgttgaagagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcgccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgtggtggaaacgtcggtgattcctgcacgatccctcttccaaggtgggttgttgaggagatggagaaggattcanatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgnttggttgcgatacacttccagttcttaaaggaagggctcctgtccaatgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41607" stop="43327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41907" g_stop="42261" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43027" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="508" r_length="153" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E472709" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41907" e_stop="42261"/>
          <exon e_start="42875" e_stop="43027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTC</genome_strand>
        <mrna_strand>CGTTGATGGAAGCTCAGGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGAGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAATGGATCATACTGTGAATAGGAAGAAGGCGATGAATGCGAGTTTACAGGCGTTGAAGAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCGCCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATTCANATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGNTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGGCTCCTGTCCAATGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475759" ref_strand="+" ref_description="SGN-E475759 [cSTB-41-N15]">
      <seq>gtttgttatgatgccgttggatagtgtgaaaatggatcatactgtgaataggaagaaggcgatgaatgcgagtttacaggcgttgaagagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcgccatgagagtataattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41692" stop="42458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41992" g_stop="42158" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E475759" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41992" e_stop="42158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGG</genome_strand>
        <mrna_strand>GTTTGTTATGATGCCGTTGGATAGTGTGAAAATGGATCATACTGTGAATAGGAAGAAGGCGATGAATGCGAGTTTACAGGCGTTGAAGAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCGCCATGAGAGTATAATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297859" ref_strand="+" ref_description="SGN-E297859 [cLET-38-L20]">
      <seq>gggattggtggagagagatgcaccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggtgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41818" stop="43367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42118" g_stop="42261" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43067" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="337" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E297859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42118" e_stop="42261"/>
          <exon e_start="42875" e_stop="43067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTC</genome_strand>
        <mrna_strand>GGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572871" ref_strand="+" ref_description="SGN-E572871 [32092]">
      <seq>agagtataattggggcggttatgctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgtggtggaaacgtcggtgattcctgcacgatccctcttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatgggtgagaggatactgcaatcagccaaggcgatattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41845" stop="43906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42145" g_stop="42261" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43085" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="328" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="439" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43375" g_stop="43606" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="672" r_length="233" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E572871" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42145" e_stop="42261"/>
          <exon e_start="42875" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCAT-GGCGAGAGGATACTGCAATCATCCAAGGCGATATTCG</genome_strand>
        <mrna_strand>AGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454040" ref_strand="+" ref_description="SGN-E454040 [cSTS-21-P12]">
      <seq>ctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgtggtggaaacgtcggtgattcctgcacgatccctcttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatgggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcangtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41868" stop="44000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42168" g_stop="42261" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43085" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="305" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="416" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43375" g_stop="43700" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="743" r_length="327" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E454040" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42168" e_stop="42261"/>
          <exon e_start="42875" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATA-CGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTA</genome_strand>
        <mrna_strand>CTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCANGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331073" ref_strand="+" ref_description="SGN-E331073 [cTOD-6-G22]">
      <seq>tggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggtgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41877" stop="43768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42177" g_stop="42261" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43085" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="296" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="407" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43375" g_stop="43468" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="501" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E331073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42177" e_stop="42261"/>
          <exon e_start="42875" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATT</genome_strand>
        <mrna_strand>TGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366592" ref_strand="+" ref_description="SGN-E366592 [cLPT-13-B16]">
      <seq>aaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggcgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagccggagagctccgatatccatcctatcccgaaaaggatggaatatggaagttccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcaccggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41890" stop="43753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42190" g_stop="42261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43085" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="283" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="394" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43375" g_stop="43453" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="473" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E366592" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42190" e_stop="42261"/>
          <exon e_start="42875" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTG</genome_strand>
        <mrna_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGCGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCCGGAGAGCTCCGATATCCATCCTATCCCGAAAAGGATGGAATATGGAAGTTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCACCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366504" ref_strand="+" ref_description="SGN-E366504 [cLPT-13-B20]">
      <seq>aaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggcgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagaggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagctcttaaaggaaggactcctgttcaacgctattctgatatcatgagagggtttagagatagatctgagaatctcttaggagataccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41890" stop="43382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42190" g_stop="42261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43082" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="280" r_length="208" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E366504" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42190" e_stop="42261"/>
          <exon e_start="42875" e_stop="43082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATT</genome_strand>
        <mrna_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGCGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGAGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGCTCTTAAAGGAAGGACTCCTGTTCAACGCTATTCTGATATCATGAGAGGGTTTAGAGATAGATCTGAGAATCTCTTAGGAGATACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699901" ref_strand="+" ref_description="SGN-E699901 [FA11CB07]">
      <seq>gaatcaacctgaatagcataaaatggaatatggaagattcatgaataattcaattatctttgtttaattttcattcgagttctgttatgcgttttgatttctactaatcgcgatgtataggcgttgcttaagtagatttttgaaatttcaggatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcaccttggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatgggtaccttcccatcgcccaaatgcttgcccgccacggtgcagttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42424" stop="44068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42724" g_stop="43085" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="473" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43375" g_stop="43768" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="867" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E699901" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42724" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCA</genome_strand>
        <mrna_strand>GAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACCTTGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGGTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728864" ref_strand="+" ref_description="SGN-E728864 [LA19AG11]">
      <seq>cggtgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggcgagttcttcctcacttgttattctcacatgcttttgaaccatggcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42570" stop="43876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42875" g_stop="43085" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="226" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="337" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43375" g_stop="43576" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="539" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E728864" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42875" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGA</genome_strand>
        <mrna_strand>GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGCGAGTTCTTCCTCACTTGTTATTCTCACATGCTTTTGAACCATGGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485443" ref_strand="+" ref_description="SGN-E485443 [cSTE-18-C7]">
      <seq>cttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42582" stop="43868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42882" g_stop="43085" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="315" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43375" g_stop="43568" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="509" r_length="194" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E485443" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42882" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCA</genome_strand>
        <mrna_strand>CTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485508" ref_strand="+" ref_description="SGN-E485508 [cSTE-18-C8]">
      <seq>cttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42582" stop="43543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42882" g_stop="43085" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43165" g_stop="43243" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="283" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E485508" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42882" e_stop="43085"/>
          <exon e_start="43165" e_stop="43243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCC</genome_strand>
        <mrna_strand>CTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560401" ref_strand="+" ref_description="SGN-E560401 [20049]">
      <seq>gaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatgggtgagaggatactgcaatcagccaaggcgatattcgagcgacaagggtgttacagatttcagtttagatttgccaggtattcactggcactatggaacaaggtcccatgcccctgaagctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42611" stop="43988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42911" g_stop="43085" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="286" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43375" g_stop="43689" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="607" r_length="321" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E560401" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42911" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="43689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCAT-GGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAG-GACAAAGGTGTGA-AGATTTCAGTTAAGA-TTG-CAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTG-AGTTGACT</genome_strand>
        <mrna_strand>GAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGCGACAAGGGTGTTACAGATTTCAGTTTAGATTTGCCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAAGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729504" ref_strand="+" ref_description="SGN-E729504 [LA21BB01]">
      <seq>cctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42722" stop="44337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43021" g_stop="43085" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="176" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43375" g_stop="44037" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="839" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E729504" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43021" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="44037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGG</genome_strand>
        <mrna_strand>CCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729511" ref_strand="+" ref_description="SGN-E729511 [LA21BB08]">
      <seq>gacgtgtgatataggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctngatactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42851" stop="44396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43151" g_stop="43275" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43375" g_stop="44096" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="847" r_length="722" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E729511" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43151" e_stop="43275"/>
          <exon e_start="43375" e_stop="44096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCG</genome_strand>
        <mrna_strand>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTNGATACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442826" ref_strand="+" ref_description="SGN-E442826 [cSTA-35-I17]">
      <seq>cttgtgtgatataggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaaggtataaatcaagttctgttttctatgctgtgttttagttttaacgtcgtcattattactgatgatttgttcttctaaattgatcaccctgcagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42854" stop="44006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43151" g_stop="43707" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E442826" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43151" e_stop="43707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACT</genome_strand>
        <mrna_strand>CTTGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAGGTATAAATCAAGTTCTGTTTTCTATGCTGTGTTTTAGT-TTTAACGTCGTCATTATTACTGATGATTTGTTCT-TCTAA---ATTG-ATCACCCTGCAGTACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448428" ref_strand="+" ref_description="SGN-E448428 [cSTS-2-N20]">
      <seq>aaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcactatgtgcacctgagaagttggttaggcaagtggctttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaatcangtgatagagagatgtgcgcgtttacatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="42921" stop="44300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43221" g_stop="43275" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43375" g_stop="44000" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="681" r_length="626" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E448428" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43221" e_stop="43275"/>
          <exon e_start="43375" e_stop="44000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTT</genome_strand>
        <mrna_strand>AAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCACTATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCTTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAATCANGTGATAGAGAGATGTGCGCGTTTACATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362433" ref_strand="+" ref_description="SGN-E362433 [cLPP-1-I15]">
      <seq>caccctgcagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcactatgtgcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43065" stop="44128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43365" g_stop="43828" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E362433" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43365" e_stop="43828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTG</genome_strand>
        <mrna_strand>CACCCTGCAGTACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCACTATGTGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727943" ref_strand="+" ref_description="SGN-E727943 [LA16AH05]">
      <seq>agcttatagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaanatgaaagaaggaaaagacgctaacaaatgccgcgaacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43087" stop="44405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43387" g_stop="44105" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E727943" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43387" e_stop="44105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGT</genome_strand>
        <mrna_strand>AGCTTATAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAANATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733357" ref_strand="+" ref_description="SGN-E733357 [LB04CF06]">
      <seq>cctgtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgtttctaaatgtttgtaaaactgttcatcgtgtagtttttttaagctagacataatgtctttatgaaatgatacatatttcagtagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43136" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43436" g_stop="44368" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="931" r_length="931" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="932" polyA_stop="942"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E733357" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43436" e_stop="44368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</genome_strand>
        <mrna_strand>CCTGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTTCTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTT-AAG-CTAGACATAATGTCTTTATGAAATGATACATATTTCAGTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454963" ref_strand="+" ref_description="SGN-E454963 [cSTS-24-L18]">
      <seq>ctttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccagatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcccaatgtgcacctgagaagttggttaggcaagtggcattagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaatcaggtgatagagagatgtgcgcgtttacatatttgaggatgaatcctgacctattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggataagacgctaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagcagccctcatgcactaagcaaatggttgtcaaatagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43185" stop="44504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43485" g_stop="44204" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E454963" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43485" e_stop="44204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACT</genome_strand>
        <mrna_strand>CTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAGATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCCCAATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCATTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAATCAGGTGATAGAGAGATGTGCGCGTTTACATATTTGAGGATGAATCCTGACCTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGATAAGACGCTAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCAGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733001" ref_strand="+" ref_description="SGN-E733001 [LB03CH02]">
      <seq>cgcataggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43311" stop="44666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43609" g_stop="44366" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E733001" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43609" e_stop="44366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGT</genome_strand>
        <mrna_strand>CGCATAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576182" ref_strand="+" ref_description="SGN-E576182 [59360]">
      <seq>ctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcactatgtgcacctgagaagttggttaggcaagtggctttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaatcaggtgatagagagatgtgcgcgtttacatatttgaggatgaatcctgacctattccatcctgataactggaggcgattcgttgccttcgtgaagaaaatgaaagaaggaaaagacgcaaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagctgccctcatgcactaagcaaatggttgtcaaatagtactgtaattttgatccttttagctaacatggagtttttcaacatgttacgaggatcttatagctcgttatcgttcttcttatatgtttgtaaaactgtccatcgtgtattttttcgaagttagacattatgtcttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43379" stop="44645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43679" g_stop="44345" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E576182" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43679" e_stop="44345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGA</genome_strand>
        <mrna_strand>CTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCACTATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCTTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAATCAGGTGATAGAGAGATGTGCGCGTTTACATATTTGAGGATGAATCCTGACCTATTCCATCCTGATAACTGGAGGCGATTCGTTGCCTTCGTGAAGAAAATGAAAGAAGGAAAAGACGCAAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCTGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACTG--TAATTTTGATCCTTTTAGCTAACATGGAGTTTTTCAACATGTTACGAGGATCTTATAGCTCGTTATCGTTCTTCTTATATGTTTGTAAAACTGTCCATCGTGTA-TTTTTTCGAAGT-TAGACATTATGTCTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599539" ref_strand="+" ref_description="SGN-E599539 [52529]">
      <seq>gttttaccttcatattgatactacgtgacattatgtatcatttcattaagacataatgtctaacttcgaaaaaatacacggacagttttacaaacatataagaagaacgataacgagctataagatcctcgtaacatgttgaaaaactccatgttagctaaaaggatcaaaattacagtactatttgacaaccatttgcttagtgcatgagggcagctgcagcttcttgcactaacggctgagttatatgcacgaaatgctctgcctccctctctacttgttcccggcatttgtttgcgtcttttccttctttcattttcttcacaaaggcaacgaatcgcctccagttatcaggatggaataggtcaggattcatcctcaaatatgtaaacgcgcacatctctctatcacctgattgatcgttgatattcaatgaggatgcttgaaggatctgttcatgtgcataatcatcgtatcgtggcaatgcattctccccagcaagtggaacttgagcttcctgagttgctaatgccacttgcctaaccaacttctcaggtgcacatagtgcatcttgtggctgctcgtggtcacgcatctcaacacatgtgaagttgaaaactgcaccgtggcgggcaagcatttgggcgatgggaaggtaaccatctcggttacgggtgttgtagtatccagcggtcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="44667" stop="43381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44358" g_stop="43681" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="700" r_length="671" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E599539" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44358" e_stop="43681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGAGTGTTGTAGTATCCAGCAGTCAACTC</genome_strand>
        <mrna_strand>ATTATGTATCATTTCATTAAGACATAATGTCTA-ACTTCGAAAAAA-TACACG--G-ACAGTTTTACAAACATATAAGAAGAACGATAACGAGCTATAAGATCCTCGTAACATGTTGAAAAACTCCATGTTAGCTAAAAGGATCAAA--ATTACAGTACTATTTGACAACCATTTGCTTAGTGCATGAGGGCAGCTGCAGCTTCTTGCACTAACGGCTGAGTTATATGCACGAAATGCTCTGCCTCCCTCTCTACTTGTTCCCGGCATTTGTTTGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGCCTCCAGTTATCAGGATGGAATAGGTCAGGATTCATCCTCAAATATGTAAACGCGCACATCTCTCTATCACCTGATTGATCGTTGATATTCAATGAGGATGCTTGAAGGATCTGTTCATGTGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAATGCCACTTGCCTAACCAACTTCTCAGGTGCACATAGTGCATCTTGTGGCTGCTCGTGGTCACGCATCTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGGGTGTTGTAGTATCCAGCGGTCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373486" ref_strand="+" ref_description="SGN-E373486 [TUS-31-B24](-)">
      <seq>gttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43421" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43721" g_stop="44375" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E373486" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43721" e_stop="44375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACC</genome_strand>
        <mrna_strand>GTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373487" ref_strand="+" ref_description="SGN-E373487 [TUS-31-B24]">
      <seq>ttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43422" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43722" g_stop="44376" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E373487" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43722" e_stop="44376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289353" ref_strand="+" ref_description="SGN-E289353 [cLES-18-L20]">
      <seq>ttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactggtttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43422" stop="44575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43722" g_stop="44275" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E289353" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43722" e_stop="44275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCG</genome_strand>
        <mrna_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGGTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212170" ref_strand="+" ref_description="SGN-E212170 [cLEC-75-J24]">
      <seq>atcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43432" stop="44631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43732" g_stop="44322" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="609"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E212170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43732" e_stop="44322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAA</genome_strand>
        <mrna_strand>ATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425363" ref_strand="+" ref_description="SGN-E425363 [STM-45-A1]">
      <seq>caaactttttttttactactgaattatgtatcatttcattaagacataatgtctaacttcgaaaaaatacacgatggacagttttacaaacatataagaagaacgataacgagctataagatcctcgtaacatgttgaaaaactccatgttagctaaaaggatcaaaattacagtactatttgacaaccatttgcttagtgcatgagggcagctgcagcttcttgcactaacggctgagttatatgcacgaaatgctctgcctccctctctacttgttcccggcatttgtttgcgtcttttccttctttcattttcttcacgaaggcaacgaatcgcctccagttatcaggatggaataggtcaggattcatcctcaaatatgtaaacgcgcacatctctctatcacctgattgatcgttgatattcaatgaggatgcttgaaggatctgttcatgtgcataatcatcgtatcgtggcaatgcattctccccagcaagtggaacttgagcttcctgagttgctaaagccacttgcctaaccaacttctcaggtgcacatagtgcatcttgtggctgctcgtggtcacgcatctcaacacatgtgaagttgaaaactgcaccgtggcgggcaagcatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="44673" stop="43436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44380" g_stop="43736" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E425363" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44380" e_stop="43736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGG</genome_strand>
        <mrna_strand>CAAACTTTTTTTTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTA-ACTTCGAAAAAA-TACACGATGGACAGTTTTACAAACATATAAGAAGAACGATAACGAGCTATAAGATCCTCGTAACATGTTGAAAAACTCCATGTTAGCTAAAAGGATCAAA--ATTACAGTACTATTTGACAACCATTTGCTTAGTGCATGAGGGCAGCTGCAGCTTCTTGCACTAACGGCTGAGTTATATGCACGAAATGCTCTGCCTCCCTCTCTACTTGTTCCCGGCATTTGTTTGCGTCTTTTCCTTCTTTCATTTTCTTCACGAAGGCAACGAATCGCCTCCAGTTATCAGGATGGAATAGGTCAGGATTCATCCTCAAATATGTAAACGCGCACATCTCTCTATCACCTGATTGATCGTTGATATTCAATGAGGATGCTTGAAGGATCTGTTCATGTGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAAAGCCACTTGCCTAACCAACTTCTCAGGTGCACATAGTGCATCTTGTGGCTGCTCGTGGTCACGCATCTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734994" ref_strand="+" ref_description="SGN-E734994 [LB14AF01]">
      <seq>ccgtcacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43449" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43749" g_stop="44376" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E734994" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43749" e_stop="44376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>CCGTCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735144" ref_strand="+" ref_description="SGN-E735144 [LB14CC03]">
      <seq>gtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43490" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43790" g_stop="44376" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E735144" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43790" e_stop="44376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>GTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267741" ref_strand="+" ref_description="SGN-E267741 [cLEI-12-H7]">
      <seq>ttttttttttactactgaattatgtatcatttcattaagacataatgtctagctttaaaaaaactacacgatgaacagttttacaaacatttaagaacaacgataacgagctataagatccaggtaacatgttgaaaaacttcatgttagctaaaaggatcaaattaaaacagtactatttgacaacgatttgcttagtgcattagggctactgcagcttcttgtactaacggctgagttatatgaacgaaatgctctgcttccctctctacctgttcgcggcattagttagcgtcttttccttctttcattttcttcacaaaggcaacgaatcgtctccagttatcaggatggaataagtcaggattcatcctcaagtatgtaaacgcgctcatctctctatcacctgattgatcgttgatgctcaacgaggacgcttgaaggatctgttcatgagcataatcatcgtatcgtggcaatgcattctccccagcaagtggaacttgagcttcctgagttgctaacgccacctgcctaaccaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="44673" stop="43530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44376" g_stop="43830" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E267741" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44376" e_stop="43830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAG-CTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTAGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590634" ref_strand="+" ref_description="SGN-E590634 [44234]">
      <seq>gtatcatttcattaagacataatgtctaacttcgaaaaaatacacgatggacagttttacaaacatataagaagaacgataacgagctataagatcctcgtaacatgttgaaaaactccatgttagctaaaaggatcaaaattacagtactatttgacaaccatttgcttagtgcatgagggcagctgcagcttcttgcactaacggctgagttatatgcacgaaatgctctgcctccctctctacttgttcccggcatgtgtttgcgtcttttccttctttcattttcttcaccgaaggcaacgaatcgcctccagttatcaggatggaataggtcaggattcatcctcaaatatgtaaacgcgcacatctctctatcacctgattgatcgttgatattcaatgaggatgcttgaaggatctgttcatgtgcataatcatcgtatcgtggcaatgcattctccccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="44653" stop="43581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44353" g_stop="43881" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E590634" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44353" e_stop="43881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCA-CAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCA</genome_strand>
        <mrna_strand>GTATCATTTCATTAAGACATAATGTCTA-ACTTCGAAAAAA-TACACGATGGACAGTTTTACAAACATATAAGAAGAACGATAACGAGCTATAAGATCCTCGTAACATGTTGAAAAACTCCATGTTAGCTAAAAGGATCAAA--ATTACAGTACTATTTGACAACCATTTGCTTAGTGCATGAGGGCAGCTGCAGCTTCTTGCACTAACGGCTGAGTTATATGCACGAAATGCTCTGCCTCCCTCTCTACTTGTTCCCGGCATGTGTTTGCGTCTTTTCCTTCTTTCATTTTCTTCACCGAAGGCAACGAATCGCCTCCAGTTATCAGGATGGAATAGGTCAGGATTCATCCTCAAATATGTAAACGCGCACATCTCTCTATCACCTGATTGATCGTTGATATTCAATGAGGATGCTTGAAGGATCTGTTCATGTGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613575" ref_strand="+" ref_description="SGN-E613575 [63352]">
      <seq>gatcaatcaggtgatagagagatgtgcgcgtttacatatttgaggatgaatcctgacctattccatcctgataactggaggcgattcgttgccttcgtgaagaaaatgaaagaaggaaaagacgcaaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagctgccctcatgcactaagcaaatggttgtcaaatagtactgtaattttgatccttttagctaacatggagtttttcaacatgttacgaggatcttatagctcgttatcgttcttcttatatgtttgtaaaactgtccatcgtgtattttttcgaagttagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43660" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43960" g_stop="44376" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E613575" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43960" e_stop="44376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>GATCAATCAGGTGATAGAGAGATGTGCGCGTTTACATATTTGAGGATGAATCCTGACCTATTCCATCCTGATAACTGGAGGCGATTCGTTGCCTTCGTGAAGAAAATGAAAGAAGGAAAAGACGCAAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCTGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACTG--TAATTTTGATCCTTTTAGCTAACATGGAGTTTTTCAACATGTTACGAGGATCTTATAGCTCGTTATCGTTCTTCTTATATGTTTGTAAAACTGTCCATCGTGTA-TTTTTTCGAAGT-TAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620265" ref_strand="+" ref_description="SGN-E620265 [70964]">
      <seq>ttcgtgaagaaaatgaaagaaggaaaagacgcaaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagctgccctcatgcactaagcaaatggttgtcaaatagtactgtaattttgatccttttagctaacatggagtttttcaacatgttacgaggatcttatagctcgttatcgttcttcttatatgtttgtaaaactgtccatcgtgtattttttcgaagttagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="43754" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44053" g_stop="44376" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E620265" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44053" e_stop="44376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>TTCGTGAAGAAAATGAAAGAAGGAAAAGACGCAAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCTGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACTG--TAATTTTGATCCTTTTAGCTAACATGGAGTTTTTCAACATGTTACGAGGATCTTATAGCTCGTTATCGTTCTTCTTATATGTTTGTAAAACTGTCCATCGTGTA-TTTTTTCGAAGT-TAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217258" ref_strand="+" ref_description="SGN-E217258 [cLEL-21-N11](-)">
      <seq>gcaagtgatccatatggctcaaggtgcagttgatggagtgaagaacacaccttgaattggatcagacaaaaagtgaaaaagagaaaatgaaattaattaattaattaattaattaattaacacatttatcaatttatatatctcaattttaattaatttttcatttaattctatgattttcacatatgctttagattattaagcataagtgaaaaaacataatattattagtttgtgagatctctcaccaaaagaattacaaaatttaattcttataaagtgagatgattttcataggtttggtttaattattgtttaacaattccatgcaccttatattggtgttatagtgaattttgttttattgatcgagatttctctcgttagaaattctcattataagtacgtaataagaaagttttattttgtttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="46428" stop="47465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46728" g_stop="47164" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E217258" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46728" e_stop="47164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</genome_strand>
        <mrna_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACCTTGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221372" ref_strand="+" ref_description="SGN-E221372 [cLEL-22-J6](-)">
      <seq>ccatatggctcaaggtgcagttgatggagtgaagaacacccttggaattggatcagacaaaaagtgaaaaagagaaaatgaaattaattaattaattaattaattaattaacacatttatcaatttatatatctcaattttaattaatttttcatttaattctatgattttcacatatgctttagattattaagcataagtgaaaaaacataatattattagtttgtgagatctctcaccaaaagaattacaaaatttaattcttataaagtgagatgattttcataggtttggtttaattattgtttaacaattccatgcaccttatattggtgttatagtgaattttgttttattgatcgagatttctctcgttagaaattctcattataagtacgtaataagaaagttttattttgtttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="46437" stop="47465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46737" g_stop="47164" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="445"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E221372" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46737" e_stop="47164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</genome_strand>
        <mrna_strand>CCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACCCTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479157" ref_strand="+" ref_description="SGN-E479157 [cSTD-8-J16]">
      <seq>atataaacaaccccaattcagtttctttctcaaaaaggctttttttctccataaagcttaatgggttgtttagttattctaaatttggtgcaaaagattcattcttttgttgttgtcaaactagtggtgaacttttacccctttcatcagctcataaggagaaggacactaatgaaaggcctccttttgatatcaattgggctgtcattcttgctggttttgctttagaaactcatactattcctccagactatgtccgaaagcttgaagtggatgcggctaattgcaaaaccatatttctttcagagtcatttgtgcgtgaaatttatgatggccaggtgttctgtgaagctaaagaaaggcctcaacttacctgctatggatccttgcggaacgagtgatccgtatgtggtgttacagctagatactcaagttgtcaaaagcaaagtgaaatgggggacataagagccaacatggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="48684" stop="51491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48984" g_stop="49231" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49232" i_stop="50480" i_length="1249">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50481" g_stop="50539" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="307" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50540" i_stop="50880" i_length="341">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.850" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50881" g_stop="50962" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="390" r_length="83" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50963" i_stop="51116" i_length="154">
            <donor d_prob="0.962" d_score="0.84"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51117" g_stop="51184" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="458" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E479157" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48984" e_stop="49231"/>
          <exon e_start="50481" e_stop="50539"/>
          <exon e_start="50881" e_stop="50962"/>
          <exon e_start="51117" e_stop="51184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGAACCCCAATTCAGTTTCTTTCTCAAAAAAGCTTTTTTTCTCAAGAAAAGTTAATGGGTTGTTTAGTTATTCTAAATTTGGTGCAAAAGATTCATTCTTTTGTTGTAGTCAAACTAGTGGTGAAATTTTACCCCTTTCATCAGCTCAGAAGGAGAAGGAGACTAGTGAAAGGCCTCCTTTTGATATCAATTTGGCTGTCATTCTTGCTGGTTTTGCTTTTGAAGCTTATACTAGTCCTCCAGTAAATTCTCAATCTTTATATGTTCATTTTTATGTTTTTCTCTGCTCAGTTGGTTGGTTATCAAACTTGTTGAGGGACTCAATTTTTTACCCTGTAAGCCCCTACCTTATTTTGAAAATTGAAACATTGAAATAATAAATTGAAAAATAGATTCTGATAGATAAGGTCTTTCGGGTATAGTCTCTCTACCTCTACGAGATAGTGGTAAGGTCTGCATGCAAGGGGAAAATGAAAGTGCATTCCTGTGCACCAGTTGAAAAAAGGAGCTTTGGAAGCTTACCTTATTATTATATTAAAATGGGAAATCTACCCTCCCGGACTCCTCTTGTGGGATTTTGTTGTTGTTCATTGTATTCTGATAGAGAAAATGGTATTGAGGTGTAGTTGATTGGCTAAAAAAATCATATCTTTTTTGTAAATAAGAGTGTTGATAGGTATGTAGTTGTTCATTTTTCTGTTTCTTTCTTTATTAATTAATTGAAAATGGACTTAAATAGAGTGTATGGATATTGAGGATTCTTGTAGTAGATAACTCCAACTAGCTTGGAATTGAGGTGTAGTTGATTGATTGGCTAAAAGTTTCTCTCTTTTTTGTAAATAAGAATGTTATGTATGTAGCTGTTTATTTTTCTGTTGCTTTTTTTTTAATAAATTGAAAATGGACTCGAATAGAGTAAATGGATATTGAGGATTCGTATAGTGGACTCCAACTAGTTTGGGGTTGAGTTGGAGTTGATTGATCGACTGTTGATTCATTTTTTGTATATAAGCATGATGATATTAGCTGTGGATTGGAGGAATTGCTTGCCAAAGTATCTTGCATTGTGGGTTCTTTCGGTTTGGCAGTGTAGAAGTCATAGCGGACATGCTTGTAAAGTATGATTTTCTGCTGCCTTAAAGTTGTGATCTTTGAGTGTCAGTAATTCGTTTTCATTCGTATTATTGTTTTGGCATCTTATCACTCTGTTGTGATTCTAGTTTAGAAATGAACATAAATGTGCTTCCCCTATAGTAGTCATACCCCACATACTCATGATAGTAAATGAAGGGAATATTTTCATTATAAACATATATAAGGTGATGATCACTTGCCTAACTGGATTTTCGTTGAACTAAATTTTGCTTAGAAGTAAATTAGGCTTGCAAGTATTCTACAAATCTATAAATGTTTATGTAGCAAATGGTAATTAAGCAGTTGAATTGTTTTCCAAGTCTGATCCAATTTGCTTTGTTTGACATTGCTTGTCAGGACAATGTCGGAAAGCTTGAGGTGGATGCGGCTAATTGCAAAACCATATTTCTTTCAGAGTATGTAGTTGTTTTCTTTCTACTGAAATAGTAAACTTAAACTGTAGGAACTTGAGTTATAGGTTAAATTGGTCGGATCAAGTAAAGGGCACACGTATGTTCCACTGGTGAAGGCTATGAAGAGTGCTCATATCTGATTGTTTTTGTCTCATTCAGCTAGTGTGATTTTCTTTTTCTTTTAAATCAAAATCAACTTAGACAATATTTCAGTTTGCCGAAAACTAGATTCATGCATGTGCAACTGCAAATGAGTTGGATATGCCTGTTTCATTCGAAGGTAGTAGGATTTGGCGTGGATCATGATTGATAATTCTCTCTCATAATTGACAACCATCTTCCAGGTCATTTGTGCGTGAAATTTATGATGGCCAGTTGTTC-ATAAAGCTAAAGAAAGGTCTCAATTTACCTGCTATGGATCTTTGGGTAAGGTTTCTACCATTTAATATTAGCAAATGATCAAATTTCAATTGAAACGTGCCTTACTGTACTTTCCTTATTCAAATGATTGCTTCTTATGCATTTATTTAATCTGCTGACTCCTGTTTTAATTTAATTGCCTACTCTAACCAAATTTCAGGGAACGAGTGATCCGTATGTGGTGTTACAGCTAGATAGTCAAGTTGTCAAAAGCAAGGTGAAATGGGG</genome_strand>
        <mrna_strand>ATATAAACAACCCCAATTCAGTTTCTTTCTCAAAAAGGCTTTTTTTCTCCATAAAGCTTAATGGGTTGTTTAGTTATTCTAAATTTGGTGCAAAAGATTCATTCTTTTGTTGTTGTCAAACTAGTGGTGAACTTTTACCCCTTTCATCAGCTCATAAGGAGAAGGACACTAATGAAAGGCCTCCTTTTGATATCAATTGGGCTGTCATTCTTGCTGGTTTTGCTTTAGAAACTCATACTATTCCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGTCCGAAAGCTTGAAGTGGATGCGGCTAATTGCAAAACCATATTTCTTTCAGA.....................................................................................................................................................................................................................................................................................................................................................GTCATTTGTGCGTGAAATTTATGATGGCCAGGTGTTCTGTGAAGCTAAAGAAAGGCCTCAACTTACCTGCTATGGATCCTTGC..........................................................................................................................................................GGAACGAGTGATCCGTATGTGGTGTTACAGCTAGATACTCAAGTTGTCAAAAGCAAAGTGAAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250761" ref_strand="+" ref_description="SGN-E250761 [cLEG-7-D4]">
      <seq>aaaagcaaggtgaaatgggggacaaaagagccaatgtggaatgaggagtttgctttaaatattaagcagccacctctgtatgatcttcagattgcagcttgggatgcaaatctggtgactccacataaacgcatgggaaatgcagcagttaatttggaacatctctgtgatggagattctcataaactgctggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="50865" stop="53823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51165" g_stop="51184" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51185" i_stop="51693" i_length="509">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51694" g_stop="51763" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="90" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51764" i_stop="52407" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52408" g_stop="52489" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="172" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52490" i_stop="52862" i_length="373">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52863" g_stop="52927" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52928" i_stop="53147" i_length="220">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53148" g_stop="53523" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="613" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E250761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51165" e_stop="51184"/>
          <exon e_start="51694" e_stop="51763"/>
          <exon e_start="52408" e_stop="52489"/>
          <exon e_start="52863" e_stop="52927"/>
          <exon e_start="53148" e_stop="53523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAGGTGAAATGGGGGTAGGTAGTTGGTCATGTGTTAAACTGCAACCTTCTACTCTTTTCAGTCAGAACTTCTCTAGATCTTGTAGGTTTACTTAACAATGAGTCAGGTTCGTTGCATGTCGTCAACGTGTTCCTGTGCAAGTATTGCTTGCATAAGCCGAATGATAAAGTAACTAATATGAGAGTCTATTATGGTTACTAAATTCAGTCTTCTCTTCTGTTTGAGCAACGTATCAAATTTTTAGCAAAAACTTATTCTGGATTTAGTAAAATACAATTATTTTTCATCCATAACTCATATTCTATTGTTATCTTGAGTGTGATTATTCCACCAGTATCTTATTTGAAGTTCCATGCTTCTTTATCCTTTTAATTTGTCATCGAGAAGGCAAAAGGTCTACAATTGCTATTTTCTGTTGGAGAATAAAGCTATCCTTTTCTTTGTTCAAATTATGCACTATTTCAATCTTGAAACATAATCCAATAACGGAAAAAATGTTAATTTCATGAATTAATGTTTGCAGGACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAGGTTGATAACTTGAGTTAATCCTTTCTCTCTAATAGTTTATTAATTAAAGGATAGCATTCCAGAAACTGTAACATTTTGCTTTTGAAATACGACTTCAATTTGCTGTAACTTAGCTCTTCCACATTAGGAAGTTTACGACACGGTATGTGGTACACCAAATCTCCTAATGATAAATGAGCAGTTCTGGTAAGATATGCAACTTGAAAAGCTTTAAGCTAACACTGCTAAATTAACTGTCTTCTGACTGACTGCTAATTCAATTATGAACGTGTATGTGAACTTCCCATATCCAACAATGTCTTTCTTGCTGAATGCTAGTTTTTCATTTCTACTTCCTGCTGAGATCCATAGTATTAACCAAATTGGAACAAACAGAATCAGTCTTTTAAGGTTATCGGCCTCGGACTAGAACTTACGGACTCGGAACTGCACATCTTGCTTTATGTTGTCTAAGATATCCATAAGAGTCTGCTTCTGTCTTTTTAGCTGCAGTCTTTAAAATGAGGAACAACTTATTTTTTCGTTATTTTTACCGTTATCTGCTCATTAGAGGACTTTCGGATGCAGTATGCTGGCATGACATGTTTTTAGGTGCTCTTATTTCTCGATTCCAGATCTGATGAATTATTCATTACTACTGTCAGATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATG</genome_strand>
        <mrna_strand>AAAAGCAAGGTGAAATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706303" ref_strand="+" ref_description="SGN-E706303 [FA29CD02]">
      <seq>gtttgctttaaatattaagcagccacctctgtatgatcttcagattgcagcttgggatgcaaatctggtgactccacataaacgcatgggaaatgcagcagttaatttggaacatctctgtgatggagattctcataaactgctggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctccctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="51421" stop="54041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51721" g_stop="51763" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51764" i_stop="52407" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52408" g_stop="52489" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52490" i_stop="52862" i_length="373">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52863" g_stop="52927" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="190" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52928" i_stop="53147" i_length="220">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53148" g_stop="53741" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="785" r_length="595" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E706303" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51721" e_stop="51763"/>
          <exon e_start="52408" e_stop="52489"/>
          <exon e_start="52863" e_stop="52927"/>
          <exon e_start="53148" e_stop="53741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAGGTTGATAACTTGAGTTAATCCTTTCTCTCTAATAGTTTATTAATTAAAGGATAGCATTCCAGAAACTGTAACATTTTGCTTTTGAAATACGACTTCAATTTGCTGTAACTTAGCTCTTCCACATTAGGAAGTTTACGACACGGTATGTGGTACACCAAATCTCCTAATGATAAATGAGCAGTTCTGGTAAGATATGCAACTTGAAAAGCTTTAAGCTAACACTGCTAAATTAACTGTCTTCTGACTGACTGCTAATTCAATTATGAACGTGTATGTGAACTTCCCATATCCAACAATGTCTTTCTTGCTGAATGCTAGTTTTTCATTTCTACTTCCTGCTGAGATCCATAGTATTAACCAAATTGGAACAAACAGAATCAGTCTTTTAAGGTTATCGGCCTCGGACTAGAACTTACGGACTCGGAACTGCACATCTTGCTTTATGTTGTCTAAGATATCCATAAGAGTCTGCTTCTGTCTTTTTAGCTGCAGTCTTTAAAATGAGGAACAACTTATTTTTTCGTTATTTTTACCGTTATCTGCTCATTAGAGGACTTTCGGATGCAGTATGCTGGCATGACATGTTTTTAGGTGCTCTTATTTCTCGATTCCAGATCTGATGAATTATTCATTACTACTGTCAGATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCT-CCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGAT</genome_strand>
        <mrna_strand>GTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249722" ref_strand="+" ref_description="SGN-E249722 [cLEF-56-N18]">
      <seq>taatttggaacatctctgtgatggagattctggtaaactggtggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgtttaataagattggattgcaatcacgaaaagacgcggatgcaagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="52167" stop="54015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52467" g_stop="52489" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52490" i_stop="52862" i_length="373">
            <donor d_prob="0.770" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52863" g_stop="52927" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="88" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52928" i_stop="53147" i_length="220">
            <donor d_prob="0.765" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53148" g_stop="53715" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="656" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E249722" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52467" e_stop="52489"/>
          <exon e_start="52863" e_stop="52927"/>
          <exon e_start="53148" e_stop="53715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATG</genome_strand>
        <mrna_strand>TAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTGGTAAACTGGTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTTAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319351" ref_strand="+" ref_description="SGN-E319351 [cTOB-15-K15]">
      <seq>aaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="52883" stop="53998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53183" g_stop="53698" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E319351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53183" e_stop="53698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGA</genome_strand>
        <mrna_strand>AAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322184" ref_strand="+" ref_description="SGN-E322184 [cTOB-24-B3]">
      <seq>gatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgataaacgagaaaatgttaatggtagtgcatcaactgaatcacctattcttaataacattcagtcatcacttccagatatcaagaaggtgacacaagacttattgcgtcaaactgataccattttgggagcattgatggttctaaatgccacagtttctcaattcaacaaaggagcaggccttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="53214" stop="54440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53514" g_stop="54140" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E322184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53514" e_stop="54140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGC</genome_strand>
        <mrna_strand>GATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273447" ref_strand="+" ref_description="SGN-E273447 [cLEN-3-F23]">
      <seq>gacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgataaacgagaaaatgttaatggtagtgcatcaactgaatcacctattcttaataacattcagtcatcacttccagatatcaagaaggtgacacaagacttattgcgtcaaactgataccattttgggagcattgatggttctaaatgccacagtttctcaattcaacaaaggagcaggccttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="53317" stop="54473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53617" g_stop="54170" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54171" i_stop="54283" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="54290" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="561" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E273447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53617" e_stop="54170"/>
          <exon e_start="54284" e_stop="54290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGC</genome_strand>
        <mrna_strand>GACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205316" ref_strand="+" ref_description="SGN-E205316 [cLEC-25-P18]">
      <seq>tcaattcaacaaaggagcagggcttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctactttattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcacgggaacagaacatacaaaatggaaggatcttgtgacggacttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="53597" stop="54759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53897" g_stop="54170" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54171" i_stop="54283" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="54346" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="337" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54347" i_stop="54425" i_length="79">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54426" g_stop="54459" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="371" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E205316" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53897" e_stop="54170"/>
          <exon e_start="54284" e_stop="54346"/>
          <exon e_start="54426" e_stop="54459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGC</genome_strand>
        <mrna_strand>TCAATTCAACAAAGGAGCAGGGCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTTATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCACGGGAACAGAACAT...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255683" ref_strand="+" ref_description="SGN-E255683 [cLEG-36-P16]">
      <seq>aagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcaggggaacagaacaaacaaaatggaaggatcttgtgacggacttgatgctagttcctgcagggttgaatcctgaaaggataggcggggacttcaaggaagaagttcaggttcacagtggtttcctaagtgcatatgattcagttaggattaggctcatctcgcttatcaaaaaagcaattggctaccaggatgatgatcttgacacgccaaacaaatggcatgtttacgtgactggccatagtcttggtggtgcattggctactcttctcgctcttgaactatcatcaagtcaactagctaagcgtggagctatacgtgtgaccatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="53644" stop="56980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53944" g_stop="54170" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54171" i_stop="54283" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="54346" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="290" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54347" i_stop="54425" i_length="79">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54426" g_stop="54472" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="337" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54473" i_stop="55186" i_length="714">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55187" g_stop="55232" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="383" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55233" i_stop="55340" i_length="108">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55341" g_stop="55420" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="463" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55421" i_stop="55790" i_length="370">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55791" g_stop="55904" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="577" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55905" i_stop="56653" i_length="749">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56654" g_stop="56680" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="604" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E255683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53944" e_stop="54170"/>
          <exon e_start="54284" e_stop="54346"/>
          <exon e_start="54426" e_stop="54472"/>
          <exon e_start="55187" e_stop="55232"/>
          <exon e_start="55341" e_stop="55420"/>
          <exon e_start="55791" e_stop="55904"/>
          <exon e_start="56654" e_stop="56680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTCTCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACAGTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTTTCTTCTCTAAGTCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCAGTAAGTGGACTGTTAAACAAAACTGTACAACATTGTTCCTCCTTTCCTATGTCTCTTTCGTACCTTCAAGTAGAAGTCGTGTCAAATATTTCTACAAGTCTATACTAAGTGGACTCGTGTCATGAGCTTAGTGTTACACTCCCAACTCTTAAAACTTGTTATGCGCTTTTGCTTTACTGAGATGTCTAGACCTGGCTTAGTCTTTTTTCTTCTGTTTATCCTTCTTTTCGTGTGGGTCTTGTTGCTGCTACTGTACATCTTATTCTTTGCCTTCTTCGCGGTTTCTTCTTTTTCTCTGTTTATGATGTACTTACTTCACCACTAAACATTGACGTCACATCGCTTATTACAATTTTAATGTATTTTCCAGGGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAAGTGAGCTCCTCCTTTTCTCTGCTTGTATCTGTAGCTTGTTTCCCATCCATTCTATATAATTTACCATTTACCAGCATCTCGCCAATAGGGCATGCATGTTTGGTTTTCTGCTTTGTATTTAACATGTTTGTAGTGTTCTTTGAGAATTTGAAATGCCTTACTTGAGCAGAGGGTCTATGGAAAACAACCTCTCTATCTCTACGAGGTAGGGTAACGTTTGCATACACTCTACCCTCCTTAGACCCCACCTGTGGACTGTTTTTTTTTTTTTTAAGAGCAGAAGTTGTAGAATTGTTGGTAGAATCCTATCAAATGTAGTTTCGATGCTAGTTACGTAAATAAACCTAACCATGGACTTGTATTCCAGTCTTATATCTATACTGATCAGTATTTGAATGTGTGACATTTTGTACCCAAAACTAATGTGCTACCAAGCTGCAGCACATCCCTTCAATTGTTCCATGTTGCCACTTTGATATCTTCTCTTGATGGTTTCATCCTTTTGACCAAATTGGACTTGTAGGTCCCCAAGTATTGTGATTGCTAAGTTGCTTGCTGCTTGTTCCATCATAATAGAACATCTTGCAAATTAAGGAGTTAGTGCAAAAAGAACGTCTGCAATTGTTAAATACAAATTTTCGGGCTGCCCTTGTTCTTGAAGTACTTGTGGAGAAAAACCAAGTCCTCCATCTCTAATCATGCTAACACTACATACGTGACCGTCTTATCTTTCTTGTTGGTTGTGTTAGGCGTGGAGCTATACGTGTGACCATGTA</genome_strand>
        <mrna_strand>AAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG............................................................................................................GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA..................................................................................................................................................................................................................................................................................................................................................................................GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAGCTATACGTGTGACCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260252" ref_strand="+" ref_description="SGN-E260252 [cLEG-53-F11]">
      <seq>attcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcaggggaacagaacaaacaaaatggaaggatcttgtgacggacttgatgctacttcctgcagggttgaatcctgaaaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="53647" stop="54780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53947" g_stop="54170" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54171" i_stop="54283" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54284" g_stop="54346" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="287" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54347" i_stop="54425" i_length="79">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54426" g_stop="54472" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="334" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E260252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53947" e_stop="54170"/>
          <exon e_start="54284" e_stop="54346"/>
          <exon e_start="54426" e_stop="54472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG</genome_strand>
        <mrna_strand>ATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTACTTCCTGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573483" ref_strand="+" ref_description="SGN-E573483 [32800]">
      <seq>cacatctttaaaacttgttgatttagcttacttgtggataaccggttgttcttttatctagacaaaatggaaggatcttgtgacgaactttatgctagttcctgcagggtaacatcacaaatctgtacaagcacaggctttctttagtttttttttctctctctactttgtctttctggtttctctgtactactaagttgtttttcctatcacagtaaacagattcttcctccatttcaatttgtttgtcttactttcctttttaatctgtttcgaagagaatgtctctttccttttctgaaaactctttcattctaactttccacgacatgtttaagaccacaagattacaggtcattttggtaccttctgcatagcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccatgccaagtcaaaaccagacaaacaaatcgaaacggagggagtaatttttctccttctctaagttctctgaaagtgtacttttattgaaatacaactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagataaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaagattttcctgaaaaaagtttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="54065" stop="55318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54365" g_stop="55018" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E573483" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54365" e_stop="55018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTC-TCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTC-TTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAAC</genome_strand>
        <mrna_strand>CACATCTTTAAAACTTGTTGATTTAGCTTACTTGTGGATAACCGGTTGTTCTTTTATCTAGACAAAATGGAAGGATCTTGTGACGAACTTTATGCTAGTTCCTGCAGGGTAACATCACAAATCTGTACAAGCACAGGCTTTCTTTAGTTTTTTTTTCTCTCTCTACTTTGTCTTTCTGGTTTCTCTGTACTACTAAGTTGTTTTTCCTATCACAGTAAACAGATTCTTCCTCCATTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCTGTTTCGAAGAGAATGTCTCTTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCAC--GACATGTTTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTGCATAGCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCATGCCAAGTCAAAACCAGACAAACAAATCGAAACGGAGGGAGTAATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACAACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGATAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGATTTTCCTGAAAAAAGTTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613843" ref_strand="+" ref_description="SGN-E613843 [63622]">
      <seq>tctttccttttctgaaaactctttcattctaactttccacgacatgttaagaccacaagattacaggtcattttggtaccttctgcatagcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccatgccaagtcaaaaccagacaaacaaatcgaaacggagggagtaatttttctccttctctaagttctctgaaagtgtacttttattgaaatacaactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagataaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaagattttcctgaaaaaagtttgaacttcaaacataatttgaaacaacaagaaatagccaaacgctttggtaattttgaatatgaattgtatgttcttgcatcttcattattcgaatgttggacagaaactttagatggttaagcaaccactgtccattttatttcgtatcctgagttgtctcctactctgcaggttgaatcctcaaaggataggtggggacttcaaggaagaagttcaggtggcactgaagttcttacttttctatctctaagtgcctgaattatgaatgtattctatttatatttataatccttctcattatcagaaccagaggttatttcgtaggttcacagtgggtttcctaagtgcatatgactcagataggattaggctcatctcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="54350" stop="55697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54648" g_stop="55397" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E613843" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54648" e_stop="55397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGT-GGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTT</genome_strand>
        <mrna_strand>TCT-TTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCAC--GACATG-TTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTGCATAGCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCATGCCAAGTCAAAACCAGACAAACAAATCGAAACGGAGGGAGTAATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACAACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGATAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGATTTTCCTGAAAAAAGTTTGAACTTCAAACATAATTTGAAACAACAAGAAATAGCCAAACGCTTTGGTAATTTTGAATATGAATTGTATGTTCTTGCATCTTCATTATTCGAATGTTGGACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGTATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTCAAAGGATAGGTGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAGTTCTTACTTTTCTATCTCTAAGTGCCTGAATTATGAATGTATTCTATTTATATTTATAATCCTTCTCATTATCAGAACCAGAGGTTA-TTTCGTAGGTTCACAGTGGGTTTCCTAAGTGCATATGACTCAGATAGGATTAGGCTCATCTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412860" ref_strand="+" ref_description="SGN-E412860 [STM-16-N20]">
      <seq>aactctttcattctaactttccacgacatgtttaagaccacaagattacaggtcattttggtaccttctacatatcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccgtgccaagtcaaaaccagacaaacaaatcaaaatggagggagtaatttttctccttctctaagttctctgaaagtgtacttttattgaaatacgactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagaaaaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaaggttttcctgaaaaaagtttgaacttcaaacataatttgaaacaacaagaaatagccaaatgctttggtaattttgaatatgaattgtatgttcttgcatcttcattattcgaatgttggacagaaactttagatggttaagcaaccactgtccattttatttcgtatcctgagttgtctcctactctgcaggttgaatcctgaaaggataggtggggacttcaaggaagaagttcatgtggcactgaagttcttacttttctatctctaagtgcctgaattatgaatgtattctatttatatttataatccttctcattatcagaaaccagagttatttttgtaggttcaccagtggtttcctaagtgcatatgactcagttaggattaggctcatctcgcttatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="54365" stop="55705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54665" g_stop="55405" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E412860" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54665" e_stop="55405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAG-AACCAGAGATTATTTTTGTAGGTTCA-CAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAA</genome_strand>
        <mrna_strand>AACTCTTTCATTCTAACTTTCCAC--GACATGTTTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTACATATCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCGTGCCAAGTCAAAACCAGACAAACAAATCAAAATGGAGGGAGTAATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACGACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGAAAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTGAACTTCAAACATAATTTGAAACAACAAGAAATAGCCAAATGCTTTGGTAATTTTGAATATGAATTGTATGTTCTTGCATCTTCATTATTCGAATGTTGGACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGTATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGTGGGGACTTCAAGGAAGAAGTTCATGTGGCACTGAAGTTCTTACTTTTCTATCTCTAAGTGCCTGAATTATGAATGTATTCTATTTATATTTATAATCCTTCTCATTATCAGAAACCAGAG-TTATTTTTGTAGGTTCACCAGTGGTTTCCTAAGTGCATATGACTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471295" ref_strand="+" ref_description="SGN-E471295 [cSTB-23-D7]">
      <seq>aactctttcattctaactttccacgacatgtttaagaccacaagattacaggtcattttggtaccttctacatatcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccgggccaagtcaaaaccagacaaacaaatcaaaatggagggagtgatttttctccttctctaagttctctgaaagtgtacttttattgaaatacgactgtttactatgctgaaagaaacatttcctttttcttaaaggaataggattggaagaaaaccttccatcctacattattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="54365" stop="55265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54665" g_stop="54965" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E471295" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54665" e_stop="54965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAG</genome_strand>
        <mrna_strand>AACTCTTTCATTCTAACTTTCCAC--GACATGTTTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTACATATCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCGGGCCAAGTCAAAACCAGACAAACAAATCAAAATGGAGGGAGTGATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACGACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAAAGGAATAGGATTGGAAGAAAACCTTCCATCCTACATTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447921" ref_strand="+" ref_description="SGN-E447921 [cSTS-4-O9]">
      <seq>aggctttactttcttaactccgtgccaagtcaaaaccagaaaacaaatcaaaatggagggagtaactttttctccttctctaagttctctgaaagtgtacttttatttgaaatacgactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagaaaaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaaggttttcctgaaaaaagtttgaacttcaaacataatttgaaacaacaagaaatagccaaatgctttggtaattttgaatatgaattgtatgttcttgcatcttcattattcgaatgttggacagaaactttagatggttaagcaaccactgtccattttatttcgtatcctgagttgtctcctactctgcaggttgaatcctgaaaggataggtggggacttcaaggaagaagttcatgtggcactgaagttcttacttttctatctctaagtgcctgaattatgaatgtattctatttatatttataatccttctcattatcagaaccagaggttatttttgtaggttcacagtggtttcctaagtgcatatgactcagttaggattaggctcatctcgcttatcaaaaaagcaattggctaccaggatngatgatcttgacacaccannacaatggcatgttttacgtgactggccatagtcttgggtggtgcattggctactcttctcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="54512" stop="56175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54770" g_stop="55420" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55421" i_stop="55790" i_length="370">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55791" g_stop="55875" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="742" r_length="88" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E447921" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54770" e_stop="55420"/>
          <exon e_start="55791" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAA-TTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTA-TTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCAGTAAGTGGACTGTTAAACAAAACTGTACAACATTGTTCCTCCTTTCCTATGTCTCTTTCGTACCTTCAAGTAGAAGTCGTGTCAAATATTTCTACAAGTCTATACTAAGTGGACTCGTGTCATGAGCTTAGTGTTACACTCCCAACTCTTAAAACTTGTTATGCGCTTTTGCTTTACTGAGATGTCTAGACCTGGCTTAGTCTTTTTTCTTCTGTTTATCCTTCTTTTCGTGTGGGTCTTGTTGCTGCTACTGTACATCTTATTCTTTGCCTTCTTCGCGGTTTCTTCTTTTTCTCTGTTTATGATGTACTTACTTCACCACTAAACATTGACGTCACATCGCTTATTACAATTTTAATGTATTTTCCAGGGAT-GATGATCTTGACACGCCAAACAAATGGCATG-TTTACGTGACTGGCCATAGTCTT-GGTGGTGCATTGGCTACTCTTCTCGCT</genome_strand>
        <mrna_strand>AGGCTTTACTTTCTT-AACTCCGTGCCAAGTCAAAACCAG-AAAACAAATCAAAATGGAGGGAGTAACTTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTTGAAATACGACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGAAAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTGAACTTCAAACATAATTTGAAACAACAAGAAATAGCCAAATGCTTTGGTAATTTTGAATATGAATTGTATGTTCTTGCATCTTCATTATTCGAATGTTGGACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGTATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGTGGGGACTTCAAGGAAGAAGTTCATGTGGCACTGAAGTTCTTACTTTTCTATCTCTAAGTGCCTGAATTATGAATGTATTCTATTTATATTTATAATCCTTCTCATTATCAGAACCAGAGGTTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGACTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA..................................................................................................................................................................................................................................................................................................................................................................................GGATNGATGATCTTGACACACCANNACAATGGCATGTTTTACGTGACTGGCCATAGTCTTGGGTGGTGCATTGGCTACTCTTCTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256030" ref_strand="+" ref_description="SGN-E256030 [cLEG-35-N1]">
      <seq>tttgatgttctctctcggtctctcctatggaggtggcttgtcataaatgaagtgtgaaactcttgaacatgctattgaatatgcattggtgcgttgtctaacatgtcagaccaacttttagcaagtttgagccataatcagatgccttatcacattgtttgccgatagttcatgggaatttcttgcctgttcttctattgtgacgtggtgaacggctgtaactaaatcactttcgcctgctttggaatcatactgagagcttaattttgttaaattctgagtgactctatataattaagttgcttcttatattgtagaaagttaaggacagctggagggttgtaaatcacagagatataataccaacagttcctcgcttgatgggctactgccatgttgctcaacctgtttatttggcagctggagatccgcaaaacacaatggataatgtggaactcttggaagatggttaccaaggtgatgttatcggagaggccacacctgatgttattgtcagtgaatttatgaaaggtgaaaaagaacttattgagaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="56706" stop="58730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57006" g_stop="57448" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57449" i_stop="57863" i_length="415">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57864" g_stop="57944" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="524" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57945" i_stop="58395" i_length="451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58396" g_stop="58430" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="559" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E256030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57006" e_stop="57448"/>
          <exon e_start="57864" e_stop="57944"/>
          <exon e_start="58396" e_stop="58430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATGGTGAGTAGATTTCATTTTCTCACTTTTTACACTATAAAACGTTGGATTGGCAGAATGTTGGCACTGTTAAGGAAGTTGTGTTTTCCCGTTAGAGATTAAAGTGGAAAAATGTGTCGGATGGTTAGCTTAACCTGAAGGAAATCACAGAAGGTTCAAAACAATTGACCTTTGTTATTTCTTCTATAAAACTATTAACTCAATTGCTCGAAGTAACTTTTTGATATTTTCTTCATAGTGTAGGTAGAAAGTATCAAGAAGTACTATGTCATTCTTACTTATTATGTATGGGAACCTACTATCGTTACCTCCCTGGAAAAAGTCGGAAAGAAAATATGATCATTTTTTACATCATTCCTTTTATACGTGAAAGGAGCTTGTTGTTTAACTATATATGTCTCGGCACATCACATTTCAGGATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTTGTATGTTTCTCCACCTTTGTTCTCCTGTATCTTTAGTTCCTTCGTTTTGGTTCTGTGCTCCATTTCATCCATTCGTGATTTGTTCTATTAAGATCTTCAACTGTTAAAATTGTACTGCTACTTACCGTACATTTGACCAATTGAGACTTCTGTTTATTCATTTTGTTCAATACTTCGCCTAATGGAGAGTCTCCTTGAGGCATAAGCTTATCAATTCACTCCATTAGGTTGAAGCCATGTTGCTCGGAGTTTTGTGTTGGATCCTTCAAAAGCTATGCATTGTTAGGGGATCCGAGACAGGTTTGGCAACATTTTTGGGAGGTCCGAGCAAGAATTGCGGGAGGGGAGCTTGTTCTGAGTTATTTTTGCTATATGGAACACATTTCCTTTTTATTTAAAGGTAAAGAACTCTTGATAATCTCGCGATTACTTATCGTAACGTTTTGTGCAGATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</genome_strand>
        <mrna_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607633" ref_strand="+" ref_description="SGN-E607633 [23602]">
      <seq>aaaagacaaagtggttgaagtgttgaagtacaacgtaaggtttcttcaaggtgaggtgaatgaaataatgtgtatgagggaacatgagagtcaagttaatgcacaagagatgatcatatttgcattgaaagaaggagaatggaagaaggaaaagaagaagctaaaagaggaagtgaagaagttgaagaaaaaattggaagaaaaagaagaagaagaagagaagtgtaaaggaatagagaatttgagtgttaaagaagataaagagtggcatcaattagcaacaagttatttgttagagcaaattaggaatgaagaagctagaagagatgaagcaattgagaaatggaaacaactttattttgctatcaagattgagcttgatgaacttattcataggacaaatcaaggaagaggactatgttggaaaacagaacaaatggaattattagaggagatgcatagagagttgaaagaaaaagaggaaaatattgcacttctaaaagaggaaatagcttcaaaggaacaacaagaactcaagagagaaagggaagttgacattttaaggcaaagtttgaaaatcatgagctataatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="60316" stop="59022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60016" g_stop="59613" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59612" i_stop="59511" i_length="102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59510" g_stop="59322" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="596" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E607633" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60016" e_stop="59613"/>
          <exon e_start="59510" e_stop="59322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACAAAGTGGTTGAAGTGTTGAAATACAATGTAAGGTTTCTTCAAGGTGAGGTGAATGAAATTATGTGTATGAGGGAATATGAGAGTCAAGTCAATGCACAAGAGATGATCATATTTGCATTGAAAGAAGCAGAATGGAAGAAGGAAAAGAAGAAGCTAAAAGAGGAAGTGAAGAAGTTGAAGAAAAACTTGGAAG--AAA-AAGATGAAGAAGACAAGTGTAAAGCTATAGAGAATTTGTGTGTAAAAGAAGATAAAGAGTGGCATGAATTAGCAACAAGTTATTTGTTGGAGCAAATTAGGAATGAAGAAGCTAGAAGAGATGAAGCAATAGAGAAGTGGAAACAACTTTATTTTGCTATCAAGATTGAGCTTGATGAACTTATTCATAGGACAAATCAAGGTACGTTTGAATTTCATCAGATTAGTCACTCAACGAACAGTTGTTATGTCTACAAGTCGTCTTGTTTTGTCCTTCTAATGTGTTTTGATCTTGTTTGACTAGGAAGAGGACTATGTTGGAAAATAGAACAAATGGAATTATTAGAGGAGATGCATAAAGAGTTGAAAGAAAAAGAGGAAAAAATTGCACTTCTAAAAGAGGAAATAGCTTCAAAGGAACAACAAGAGCTCAAGAGGGAAAGGGAAGTTGACATTTTAAGGCAAAGTTTGAAAATCATGAGCTATAATATGA</genome_strand>
        <mrna_strand>AAAAGACAAAGTGGTTGAAGTGTTGAAGTACAACGTAAGGTTTCTTCAAGGTGAGGTGAATGAAATAATGTGTATGAGGGAACATGAGAGTCAAGTTAATGCACAAGAGATGATCATATTTGCATTGAAAGAAGGAGAATGGAAGAAGGAAAAGAAGAAGCTAAAAGAGGAAGTGAAGAAGTTGAAGAAAAAATTGGAAGAAAAAGAAGAAGAAGAAGAGAAGTGTAAAGGAATAGAGAATTTGAGTGTTAAAGAAGATAAAGAGTGGCATCAATTAGCAACAAGTTATTTGTTAGAGCAAATTAGGAATGAAGAAGCTAGAAGAGATGAAGCAATTGAGAAATGGAAACAACTTTATTTTGCTATCAAGATTGAGCTTGATGAACTTATTCATAGGACAAATCAAG......................................................................................................GAAGAGGACTATGTTGGAAAACAGAACAAATGGAATTATTAGAGGAGATGCATAGAGAGTTGAAAGAAAAAGAGGAAAATATTGCACTTCTAAAAGAGGAAATAGCTTCAAAGGAACAACAAGAACTCAAGAGAGAAAGGGAAGTTGACATTTTAAGGCAAAGTTTGAAAATCATGAGCTATAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705044" ref_strand="+" ref_description="SGN-E705044 [FA26AA08]">
      <seq>cttagttatctgcctcggaacctccgaattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcagaagaaaacctgaaactcattgacgttgacgtccccgtgattggtgggcatgcaggnaatacaattctgccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62881" stop="66029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63181" g_stop="63267" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="65729" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="926" r_length="839" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E705044" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63181" e_stop="63267"/>
          <exon e_start="64890" e_stop="65729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGC</genome_strand>
        <mrna_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAG-AAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGNAATACAATTCTGCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332287" ref_strand="+" ref_description="SGN-E332287 [cTOD-17-D3]">
      <seq>gaattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgnntcacataaatgctaatattgtgaaaagcttgggtgaggctgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62906" stop="65791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63206" g_stop="63267" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="65491" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="664" r_length="602" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E332287" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63206" e_stop="63267"/>
          <exon e_start="64890" e_stop="65491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCT</genome_strand>
        <mrna_strand>GAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGNNTCACATAAATGCTAATATTGTGAAAAGCTTGGGTGAGGCTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326396" ref_strand="+" ref_description="SGN-E326396 [cTOC-14-K5]">
      <seq>aattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62907" stop="65709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63207" g_stop="63267" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="65409" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="581" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E326396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63207" e_stop="63267"/>
          <exon e_start="64890" e_stop="65409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGT</genome_strand>
        <mrna_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325437" ref_strand="+" ref_description="SGN-E325437 [cTOC-1-F19]">
      <seq>aattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62907" stop="65690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63207" g_stop="63267" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="65390" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="562" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E325437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63207" e_stop="63267"/>
          <exon e_start="64890" e_stop="65390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAG</genome_strand>
        <mrna_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253056" ref_strand="+" ref_description="SGN-E253056 [cLEG-25-M1]">
      <seq>gaaaaaatagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62936" stop="65832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63236" g_stop="63267" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="65532" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="674" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E253056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63236" e_stop="63267"/>
          <exon e_start="64890" e_stop="65532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCC</genome_strand>
        <mrna_strand>GAAAAAAT-AGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550918" ref_strand="+" ref_description="SGN-E550918 [TUS-54-F23]">
      <seq>aaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcaactcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagaatcatcgttgcacctttatgatattgcaaatgtcanaggagtcgcagcagatctcagccattggcacactcccgctcaggtttttgactttacgggagcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62939" stop="65657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63239" g_stop="63267" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="65357" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="497" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E550918" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63239" e_stop="63267"/>
          <exon e_start="64890" e_stop="65357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</genome_strand>
        <mrna_strand>AAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAACTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGAATCATCGTTGCACCTTTATGATATTGCAAATGTCANAGGAGTCGCAGCAGATCTCAGCCATTGGCACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688667" ref_strand="+" ref_description="SGN-E688667 [t3_tus_54_F23]">
      <seq>aaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcaactcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagaatcatcgttgcacctttatgatattgcaaatgtcanaggagtcgcagcagatctcagccattggcacactcccgctcaggtttttgactttacgggagcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62939" stop="65657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63239" g_stop="63267" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="65357" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="497" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E688667" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63239" e_stop="63267"/>
          <exon e_start="64890" e_stop="65357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</genome_strand>
        <mrna_strand>AAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAACTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGAATCATCGTTGCACCTTTATGATATTGCAAATGTCANAGGAGTCGCAGCAGATCTCAGCCATTGGCACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267233" ref_strand="+" ref_description="SGN-E267233 [cLEI-4-F3]">
      <seq>ttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcataagaaaaacctgaaactcattgacgttgacgtccccgtgattggtgggcatgcagggataacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="64961" stop="66019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65261" g_stop="65719" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E267233" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65261" e_stop="65719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATT</genome_strand>
        <mrna_strand>TTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCATAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702488" ref_strand="+" ref_description="SGN-E702488 [FA18DE01]">
      <seq>agttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcagaagaaaaacctgaaactcattgacgttgacgtccccgtgattcgtgggcatgcagggataacaattctgccattgctgtcaaagacaagaccatcaactactttcacggacgaagaagtgcaggaactaaccgtgaggatccaaaacgctgggaccgaggtcgttgaagcaaaggctggagcaggatctgcaacactgtcaatggcatatgctgcagctagatttgttgaatcctcacttcgtgcccttgacggtgatgctgatgtttacgagtgttcttacgttcaatctgacctgacggaacttccattctttgcatcacgagttaaactaggaaggaatggaatcgaggcattgatttcgtctgatctccgtggattaactgagtatgaacagaaggcattagaagctctaaagatagagttgaaagctagcattgagaaagggatagcttatgctcaaaaacaaacagtgagtgcttagagaaagagtttagtttagattaactataggaaaagattctcaacatgacaatttttgcatggtttgaacttactaagccctttattctttttattggtctgaactctactagtgntttgttattgcttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="65089" stop="66569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65389" g_stop="66269" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="881" r_length="881" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E702488" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65389" e_stop="66269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</genome_strand>
        <mrna_strand>AGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTCGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGNTTTGTTATTGCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577749" ref_strand="+" ref_description="SGN-E577749 [LE15CF11]">
      <seq>taaaaagaataaagggcttagtaagttcaaaccatgcaaaaattgtcatgttgagaatcttttcctatagttaatctaaactaaactctttctctaagcactcactgtttgtttttgagcataagctatccctttctcaatgctagctttcaactctatctttagagcttctaatgccttctgttcatactcagttaatccacggagatcagacgaaatcaatgcctcgattccattccttcctagtttaactcgtgatgcaaagaatggaagttccgtcaggtcagattgaacgtaagaacactcgtaaacatcagcatcaccgtcaagggcacgaagtgaggattcaacaaatctagctgcagcatatgccattgacagtgttgcagatcctgctccagcctttgcttcaacgacctcggtcccagcgttttggatcctcacggttagttcctgcacttcttcgtccgtgaaagtagttgatggtcttgtctttgacagcaatggcagaattgttatccctgcatgcccaccaatcacggggacgtcaacgtcaatgagtttcaggtttttcttctgcgcgacgaatgtgtttgctctgacaacgtccagggtggtaacaccaaagagttttttaggatcatacacacccttttgcttcagaacctccgcagcaatcggcactgtggagttgactggattgctgataatgtggataaaggcatctgggcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="66529" stop="65194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66229" g_stop="65494" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E577749" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66229" e_stop="65494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGAATAAAGGGCTTAGTAAGTTCAAACCATGCAAAAATTGTCATGTTGAGAATCTTTTCCTATAGTTAATCTAAACTAAACTCTTTCTCTAAGCACTCACTGTTTGTTTTTGAGCATAAGCTATCCCTTTCTCAATGCTAGCTTTCAACTCTATCTTTAGAGCTTCTAATGCCTTCTGTTCATACTCAGTTAATCCACGGAGATCAGACGAAATCAATGCCTCGATTCCATTCCTTCCTAGTTTAACTCGTGATGCAAAGAATGGAAGTTCCGTCAGGTCAGATTGAACGTAAGAACACTCGTAAACATCAGCATCACCGTCAAGGGCACGAAGTGAGGATTCAACAAATCTAGCTGCAGCATATGCCATTGACAGTGTTGCAGATCCTGCTCCAGCCTTTGCTTCAACGACCTCGGTCCCAGCGTTTTGGATCCTCACGGTTAGTTCCTGCACTTCTTCGTCCGTGAAAGTAGTTGATGGTCTTGTCTTTGACAGCAATGGCAGAATTGTTATCCCTGCATGCCCACCAATCACGGGGACGTCAACGTCAATGAGTTTCAGGTTTTTCTTCTGCGCGACGAATGTGTTTGCTCTGACAACGTCCAGGGTGGTAACACCAAAGAGTTTTTTAGGATCATACACACCCTTTTGCTTCAGAACCTCGGCAGCAATCGGCACTGTGGAGTTGACTGGATTGCTGATAATGTGGATAAAGGCATCTGGGCAATTG</genome_strand>
        <mrna_strand>TAAAAAGAATAAAGGGCTTAGTAAGTTCAAACCATGCAAAAATTGTCATGTTGAGAATCTTTTCCTATAGTTAATCTAAACTAAACTCTTTCTCTAAGCACTCACTGTTTGTTTTTGAGCATAAGCTATCCCTTTCTCAATGCTAGCTTTCAACTCTATCTTTAGAGCTTCTAATGCCTTCTGTTCATACTCAGTTAATCCACGGAGATCAGACGAAATCAATGCCTCGATTCCATTCCTTCCTAGTTTAACTCGTGATGCAAAGAATGGAAGTTCCGTCAGGTCAGATTGAACGTAAGAACACTCGTAAACATCAGCATCACCGTCAAGGGCACGAAGTGAGGATTCAACAAATCTAGCTGCAGCATATGCCATTGACAGTGTTGCAGATCCTGCTCCAGCCTTTGCTTCAACGACCTCGGTCCCAGCGTTTTGGATCCTCACGGTTAGTTCCTGCACTTCTTCGTCCGTGAAAGTAGTTGATGGTCTTGTCTTTGACAGCAATGGCAGAATTGTTATCCCTGCATGCCCACCAATCACGGGGACGTCAACGTCAATGAGTTTCAGGTTTTTCTTCTGCGCGACGAATGTGTTTGCTCTGACAACGTCCAGGGTGGTAACACCAAAGAGTTTTTTAGGATCATACACACCCTTTTGCTTCAGAACCTCCGCAGCAATCGGCACTGTGGAGTTGACTGGATTGCTGATAATGTGGATAAAGGCATCTGGGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733525" ref_strand="+" ref_description="SGN-E733525 [LB10BA06]">
      <seq>gtcaaagacaagaccatcaactactttcacggacgaagaagtgcaggaactaaccgtgaggatccaaaacgctgggaccgaggtcgttgaagcaaaggctggagcaggatctgcaacactgtcaatggcatatgctgcagctagatttgttgaatcctcacttcgtgcccttgacggtgatgctgatgtttacgagtgttcttacgttcaatctgacctgacggaacttccattctttgcatcacgagttaaactaggaaggaatggaatcgaggcattgatttcgtctgatctccgtggattaactgagtatgaacagaaggcattagaagctctaaagatagagttgaaagctagcattgagaaagggatagcttatgctcaaaaacaaacagtgagtgcttagagaaagagtttagtttagattaactataggaaaagattctcaacatgacaatttttgcatggtttgaacttactaagccctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="65431" stop="66520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65731" g_stop="66219" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="508"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-E733525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65731" e_stop="66219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTT</genome_strand>
        <mrna_strand>GTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="92647" stop="91605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92347" g_stop="91907" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92347" e_stop="91907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACAC-AAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTT--TTAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATT--AAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>226</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="41" PGL_stop="4385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41" e_stop="616"/>
            <exon e_start="712" e_stop="787"/>
            <exon e_start="1937" e_stop="2109"/>
            <exon e_start="2493" e_stop="2583"/>
            <exon e_start="2663" e_stop="2917"/>
            <exon e_start="3405" e_stop="3577"/>
            <exon e_start="3952" e_stop="4385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.965" e_score="0.992"/>
          <exon-intron don_prob="0.440" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="41" e_stop="616" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.965">
            <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="712" e_stop="787" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.440" acc_prob="0.822">
            <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1937" e_stop="2109" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2493" e_stop="2583" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.846" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2584" i_stop="2662" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2663" e_stop="2917" e_length="255"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3405" e_stop="3577" e_length="173"/>
          </exon>
          <intron i_serial="6" don_prob="0.931" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="3952" e_stop="4385" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41" stop="571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42" stop="391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71" stop="560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117" stop="539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="561" stop="616"/>
              <exon start="712" stop="787"/>
              <exon start="1937" stop="2109"/>
              <exon start="2493" stop="2583"/>
              <exon start="2663" stop="2879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="565" stop="616"/>
              <exon start="712" stop="787"/>
              <exon start="1937" stop="2109"/>
              <exon start="2493" stop="2552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="566" stop="616"/>
              <exon start="712" stop="787"/>
              <exon start="1937" stop="2109"/>
              <exon start="2493" stop="2583"/>
              <exon start="2663" stop="2806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2691" stop="2917"/>
              <exon start="3405" stop="3577"/>
              <exon start="3952" stop="4318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2799" stop="2917"/>
              <exon start="3405" stop="3577"/>
              <exon start="3952" stop="4385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2799" stop="2917"/>
              <exon start="3405" stop="3577"/>
              <exon start="3952" stop="4331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3447" stop="3577"/>
              <exon start="3952" stop="4343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTGAGGAATATTATAAAAGGGTTCTTAAAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG : TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG : TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG : CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAG : ATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG : TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG : CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAATGACAA</gDNA_template>
            <first_frame> K  K  E  L  G  *  Y  S  Y  L  *  N  P  I  V  F  T  *  N  H  L  E  E  L  N  L  M  G  I  *  K  G  C  L  E  I  L  Q  F  F  L  I  L  E  N  C  I  K  L  K  G  D  I  F  I  L  S  *  A  R  K  F  K  M  L  P  K  E  P  S  F  C  I  Y  N  T  E  D  G  V  D  E  M  K  E  N  Q  D  L  V  R  S  V  T  I  G  D  I  V  S  D  I  G  S  S  D  F  S  F  G  K  K  G  M  G  L  I  E  E  D  E  N  E  D  E  E  K  R  V  F  Y  E  V  N  E  L  G  F  E  E  S  E  Q  V  I  S  S  K  Y  H  G  G  V  E  F  E  P  L  D  F  D  G  N  G  D  V  E  E  Y  Y  K  R  V  L  K  E  D  P  C  N  P  L  F  L  R  N  Y  A  Q  L  L  Q  :  L  L  R  N  A  L  F  I  S  R  G  S  S  G  N  N  L  S  I  S  M  R  *  R  K   : V  *  G  R  S  S  W  S  *  T  L  L  L  S  S  Y  T  S  *  S  K  R  W  R  Y  L  V  T  V  C  *  V  S  M  G  A  A  P  R  *  R  *  S  I  R  L  L  *  T  C  S  T  Y  C  S  *  E  Q  :  P  C  S  W  S  I  C  *  F  P  L  G  H  Y  *  R  *  K  *  G  *  N  E  H  T  E  *  *  D  *   : D  *  G  K  W  G  S  Y  C  I  P  E  L  R  L  R  R  S  *  Q  T  C  *  P  S  L  T  S  C  S  R  I  R  N  W  G  *  S  S  W  W  Q  L  S  C  *  L  Y  C  S  C  I  *  Y  G  R  K  C  R  G  G  V  H  E  N  D  Q  R  I  S  S  S  L  R  A  F  K  K  L  C  S  V  S  *  S   : V  *  G  R  P  T  R  C  *  R  I  L  L  T  R  N  T  S  *  S  Y  *  W  R  N  Y  F  T  V  C  H  V  D  M  A  T  S  S  G  *  R  *  S  L  N  L  L  *  E  G  S  T  S  F  S  T  R  Q  :  R  R  A  C  C  I  C  *  V  S  L  A  N  R  G  R  *  R  R  R  R  R  *  N  V  R  *  S  Q  W  S  A  T  S  A  R  S  R  L  K  P  D  V  K  *  I  S  Q  S  R  F  *  F  I  F  *  F  L  K  L  F  A  L  S  K  D  L  E  I  S  L  V  V  E  D  Q  L  F  W  E  N  F  *  M  V  S  V  V  *  *  A  I  K  C  A  Q  *  C  *  I  D  F  V  Q  C  Y  F  W  E  *  *  *  Q  L  K  E  L  N  E  K  L  N  S  D  S  A  L  *  *  Y  T  V  L  Y  L  Y  L  Y  T  T  F  T  N  D   </first_frame>
            <second_frame>  K  K  N  L  D  N  T  P  T  C  K  I  P  *  S  S  H  K  I  I  *  K  S  L  I  *  W  E  F  K  R  V  V  L  K  Y  F  N  F  F  *  S  W  K  T  V  L  S  S  K  V  T  F  L  S  C  H  K  Q  E  S  S  K  C  C  L  K  N  H  H  F  V  Y  I  I  L  K  M  G  L  M  R  *  R  K  I  K  I  W  L  G  L  *  Q  *  G  I  L  Y  Q  I  *  V  V  V  I  S  V  L  G  K  R  G  W  G  *  L  R  K  M  R  M  K  M  R  K  K  G  F  F  M  R  L  M  S  *  D  L  K  R  V  N  K  *  L  V  Q  S  I  M  V  G  L  S  L  N  L  *  I  L  M  E  M  E  M  L  R  N  I  I  K  G  F  L  K  K  I  P  V  T  L  C  F  *  G  I  M  L  N  F  C  S :   C  L  E  M  L  Y  L  *  A  E  G  L  A  E  T  T  S  L  S  L  *  D  K  G  K  :  S  K  G  D  L  P  G  A  E  H  Y  Y  F  Q  A  T  L  A  D  P  K  D  G  D  T  L  S  Q  Y  A  K  L  V  W  E  L  H  Q  D  K  D  R  A  S  D  Y  F  E  R  A  V  R  T  A  P  E  N  S :   H  V  L  G  A  Y  A  S  F  L  W  D  I  T  D  D  E  S  E  D  E  M  N  T  Q  S  D  K  T  K  :  I  E  E  S  G  E  A  T  V  S  R  N  L  D  Y  E  E  A  D  R  P  V  S  P  P  L  H  L  A  A  G  L  G  I  G  V  N  L  V  G  G  S  S  P  V  D  Y  T  A  A  V  S  D  M  D  G  N  A  E  E  E  Y  M  R  M  I  K  E  Y  P  H  H  S  V  L  L  R  N  Y  A  Q  F  L  S  Q  :  S  K  G  D  L  L  G  A  E  E  Y  Y  S  H  A  I  L  A  D  P  T  D  G  E  T  I  S  Q  Y  A  M  L  I  W  Q  L  H  Q  D  K  D  K  A  S  T  Y  F  K  R  A  V  Q  A  S  P  Q  D  S :   D  V  L  A  A  Y  A  R  F  L  W  Q  T  E  E  D  E  D  G  E  E  D  E  T  L  G  D  H  N  G  A  P  L  L  Q  G  V  A  *  S  L  M  S  N  E  F  H  N  P  D  S  N  S  Y  F  S  F  S  S  F  S  H  Y  L  K  T  W  R  F  L  L  L  W  R  I  N  Y  S  G  K  I  F  R  W  *  V  L  F  N  E  Q  *  N  V  H  N  N  V  K  L  T  L  Y  N  V  I  F  G  N  N  D  S  S  *  K  S  *  M  K  N  *  I  V  T  L  H  C  S  N  I  L  F  C  T  S  I  C  I  Q  H  S  Q  M  T  </second_frame>
            <third_frame>   K  R  T  W  I  I  L  L  L  V  K  S  H  S  L  H  I  K  S  F  R  R  A  *  F  D  G  N  L  K  G  L  S  *  N  T  S  I  F  S  N  L  G  K  L  Y  *  A  Q  R  *  H  F  Y  L  V  I  S  K  K  V  Q  N  V  A  *  R  T  I  I  L  Y  I  *  Y  *  R  W  G  *  *  D  E  G  K  S  R  F  G  *  V  C  D  N  R  G  Y  C  I  R  Y  R  *  *  *  F  Q  F  W  E  K  G  D  G  V  D  *  G  R  *  E  *  R  *  G  K  K  G  F  L  *  G  *  *  A  R  I  *  R  E  *  T  S  N  *  F  K  V  S  W  W  G  *  V  *  T  F  R  F  *  W  K  W  R  C  *  G  I  L  *  K  G  S  *  R  R  S  L  *  P  F  V  F  E  E  L  C  S  T  F  A   : V  A  *  K  C  F  I  Y  K  P  R  V  *  R  K  Q  P  L  Y  L  Y  E  I  K  E  S :   L  R  E  I  F  L  E  L  N  T  I  T  F  K  L  H  *  L  I  Q  K  M  E  I  P  C  H  S  M  L  S  *  Y  G  S  C  T  K  I  K  I  E  H  Q  I  T  L  N  V  Q  Y  V  L  L  L  R  T   : A  M  F  L  E  H  M  L  V  S  S  G  T  L  L  T  M  K  V  R  M  K  *  T  H  R  V  I  R  L  R :   L  R  K  V  G  K  L  L  Y  P  G  T  *  I  T  K  K  L  T  D  L  L  A  L  P  Y  I  L  Q  Q  D  *  E  L  G  L  I  *  L  V  A  A  L  L  L  I  I  L  Q  L  Y  L  I  W  T  E  M  P  R  R  S  T  *  E  *  S  K  N  I  L  I  T  P  C  F  *  E  T  M  L  S  F  L  V  S :   L  R  E  T  Y  *  V  L  K  N  I  T  H  T  Q  Y  *  L  I  L  L  M  E  K  L  F  H  S  M  P  C  *  Y  G  N  F  I  R  I  K  I  K  P  Q  P  T  L  R  G  Q  Y  K  L  L  H  K  T   : A  T  C  L  L  H  M  L  G  F  S  G  K  Q  R  K  M  K  T  E  K  K  M  K  R  *  V  I  T  M  E  R  H  F  C  K  E  S  P  K  A  *  C  Q  M  N  F  T  I  Q  I  L  I  H  I  L  V  S  Q  A  F  R  I  I  *  R  L  G  D  F  S  C  C  G  G  S  T  I  L  G  K  F  L  D  G  K  C  C  L  M  S  N  K  M  C  T  I  M  L  N  *  L  C  T  M  L  F  L  G  I  M  I  A  V  E  R  V  E  *  K  I  K  *  *  L  C  I  V  V  I  Y  C  F  V  P  L  F  V  Y  N  I  H  K  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="776" stop="787"/>
                    <exon start="1937" stop="2109"/>
                    <exon start="2493" stop="2583"/>
                    <exon start="2663" stop="2917"/>
                    <exon start="3405" stop="3577"/>
                    <exon start="3952" stop="4069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKGKSKGDLPGAEHYYFQATLADPKDGDTLSQYAKLVWELHQDKDRASDYFERAVRTAPENSHVLGAYASFLWDITDDESEDEMNTQSDKTKIEESGEATVSRNLDYEEADRPVSPPLHLAAGLGIGVNLVGGSSPVDYTAAVSDMDGNAEEEYMRMIKEYPHHSVLLRNYAQFLSQSKGDLLGAEEYYSHAILADPTDGETISQYAMLIWQLHQDKDKASTYFKRAVQASPQDSDVLAAYARFLWQTEEDEDGEEDETLGDHNGAPLLQGVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="215" stop="616"/>
                    <exon start="712" stop="780"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARKFKMLPKEPSFCIYNTEDGVDEMKENQDLVRSVTIGDIVSDIGSSDFSFGKKGMGLIEEDENEDEEKRVFYEVNELGFEESEQVISSKYHGGVEFEPLDFDGNGDVEEYYKRVLKEDPCNPLFLRNYAQLLQLLRNALFISRGSSGNNLSISMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11386" PGL_stop="4785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11386" e_stop="11027"/>
            <exon e_start="10047" e_stop="9913"/>
            <exon e_start="8763" e_stop="8457"/>
            <exon e_start="7774" e_stop="7509"/>
            <exon e_start="7402" e_stop="7219"/>
            <exon e_start="7096" e_stop="6975"/>
            <exon e_start="6887" e_stop="6822"/>
            <exon e_start="6491" e_stop="6413"/>
            <exon e_start="5254" e_stop="4785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11386" e_stop="11027" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10047" e_stop="9913" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8763" e_stop="8457" e_length="307"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.906">
            <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7774" e_stop="7509" e_length="266"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.932">
            <gDNA_intron_boundary i_start="7508" i_stop="7403" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7402" e_stop="7219" e_length="184"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7096" e_stop="6975" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6887" e_stop="6822" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6491" e_stop="6413" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="5254" e_stop="4785" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11386" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11371" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11358" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8457"/>
              <exon start="7774" stop="7509"/>
              <exon start="7402" stop="7219"/>
              <exon start="7096" stop="6975"/>
              <exon start="6887" stop="6822"/>
              <exon start="6491" stop="6413"/>
              <exon start="5254" stop="4785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11344" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11339" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11338" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11336" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11328" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11328" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11328" stop="11027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11142" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8457"/>
              <exon start="7774" stop="7509"/>
              <exon start="7402" stop="7398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8650" stop="8457"/>
              <exon start="7774" stop="7511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8594" stop="8457"/>
              <exon start="7774" stop="7509"/>
              <exon start="7402" stop="7219"/>
              <exon start="7096" stop="6975"/>
              <exon start="6887" stop="6855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7268" stop="7219"/>
              <exon start="7096" stop="6975"/>
              <exon start="6887" stop="6822"/>
              <exon start="6491" stop="6413"/>
              <exon start="5254" stop="4799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7227" stop="7219"/>
              <exon start="7096" stop="6975"/>
              <exon start="6887" stop="6822"/>
              <exon start="6491" stop="6413"/>
              <exon start="5254" stop="4785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7226" stop="7219"/>
              <exon start="7096" stop="6975"/>
              <exon start="6887" stop="6822"/>
              <exon start="6491" stop="6413"/>
              <exon start="5254" stop="4832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6880" stop="6822"/>
              <exon start="6491" stop="6413"/>
              <exon start="5254" stop="4819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595813" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6485" stop="6413"/>
              <exon start="5254" stop="4799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5240" stop="4788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5234" stop="4797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5215" stop="4797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5208" stop="4786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5193" stop="4797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5109" stop="4826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAGCAGCTCTCACTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG : GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG : CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAG : TGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATT : CTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTTTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAG : TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG : GACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAG : GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA : GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGATATTTTGCGCAAG</gDNA_template>
            <first_frame> F  Q  Q  L  S  L  F  L  S  L  E  P  V  V  S  S  G  H  S  I  F  S  L  *  K  L  *  S  Q  *  R  T  N  S  V  L  F  T  A  C  G  V  *  W  E  K  T  L  L  L  L  F  C  L  R  R  K  C  E  C  C  E  N  L  G  F  F  F  G  G  D  F  R  S  F  G  R  S  S  F  S  *  D  S  H  S  N  W  I  D  E  F  I  S  T  A  V  *  A  A  A  A  T  G  F  Y  E  M  A  T  P  F  H  L  P  V  T  A  A  Q  :  V  G  T  Y  F  V  G  Q  Y  Y  Q  M  L  Q  T  Q  P  D  F  V  H  Q  F  Y  S  D  A  S  T  V  L  R  I  D  S  S  T  R  E  T  A  S  G  M  L  :  Q  I  H  T  L  V  T  S  L  Q  Y  T  G  I  E  I  K  T  L  H  S  L  E  S  W  N  G  G  V  L  V  M  V  S  G  S  V  S  V  K  G  I  N  R  S  R  K  F  V  Q  S  F  F  L  A  P  Q  E  K  G  Y  F  V  L  N  D  I  F  H  Y  V  D  E  E  Q  I  L  Q  Q  P  L  A  Y  L  A  H  S  N  L  D  S  K  L  N  V  S  N  A  L  Q  E  Q   : V  P  N  Y  M  F  G  G  E  I  Q  A  R  E  F  V  D  A  P  K  I  E  D  N  G  P  V  N  N  Y  S  F  P  E  E  R  L  Q  H  V  S  E  A  E  N  I  L  E  D  N  F  A  V  Q  S  N  G  P  L  Q  S  T  I  N  A  V  Q  D  H  L  S  C  P  V  E  E  P  V  A  E  P  Q  K  H  T  Y  A  S  I  :  L  Q  V  T  K  G  N  S  A  Q  G  L  A  Q  S  S  L  N  K  S  T  P  P  P  S  E  W  Q  H  V  P  E  P  P  A  L  P  S  V  H  S  T  N  T  I  E  R  Y  T  E  A  T  E  E  A  S  A  V  E  D  E   : V  E  V  K  S  V  Y  V  K  N  V  P  T  T  M  A  A  Y  E  I  E  E  E  F  K  K  F  G  K  L  K  P  D  A  V  A  I  R  T  R  K  :  D  I  D  V  C  Y  A  F  V  E  F  E  D  V  T  G  V  Q  N  A  I  E  :  A  S  T  V  Q  I  G  G  H  Q  L  Y  I  E  G  R  R  P  N  R  N  N  L  I  R  G   : R  G  R  G  R  G  R  V  S  Y  S  M  D  G  R  G  R  Y  G  G  R  G  F  G  R  G  G  Q  D  G  G  D  R  D  Y  G  R  S  R  G  N  G  Y  Y  R  Q  T  P  R  Q  E  R  A  Y  P  S  N  Q  Q  S  L  R  N  E  Q  Y  S  W  E  *  A  G  S  *  I  H  E  G  Q  T  I  H  L  Q  Y  K  P  C  C  Q  Q  L  F  C  L  H  S  S  P  K  H  *  Y  T  L  R  S  I  K  I  *  I  C  G  R  K  H  P  *  F  I  *  F  F  W  Q  K  *  Q  V  L  V  F  S  T  *  I  D  F  Y  L  K  D  Y  L  C  S  S  D  L  L  V  D  I  L  R  K </first_frame>
            <second_frame>  F  S  S  S  H  S  F  S  L  *  N  Q  W  S  Q  A  V  T  P  F  S  L  S  R  N  C  R  V  S  D  E  R  I  Q  C  Y  L  L  L  V  E  C  N  G  R  R  P  C  C  C  F  F  A  C  G  A  N  V  N  A  V  K  I  *  G  F  F  L  G  G  I  L  D  L  L  V  D  L  V  F  L  E  I  L  T  L  I  G  L  T  S  S  F  L  P  L  F  K  L  P  P  P  P  G  F  T  K  W  R  R  L  F  T  C  Q  S  L  L  L  R :   W  G  H  T  S  W  A  S  I  I  R  C  Y  R  P  N  R  I  L  F  T  S  S  T  V  M  L  V  L  C  F  E  L  I  P  A  P  E  R  L  L  Q  E  C  C :   K  F  T  P  L  S  R  R  Y  S  T  L  E  *  R  *  K  H  S  I  P  W  N  H  G  M  V  V  S  L  *  W  F  Q  V  L  S  V  *  K  V  S  I  G  V  G  S  S  F  N  H  F  S  L  H  P  R  K  K  D  T  L  S  S  M  I  S  F  T  M  L  M  R  S  K  F  F  S  N  H  W  P  I  *  H  I  R  T  L  I  Q  S  *  M  F  P  M  H  F  R  S  K  :  C  P  T  T  C  L  V  E  K  S  K  Q  G  S  L  L  M  L  L  K  L  K  I  T  G  Q  S  I  T  I  V  F  R  R  N  G  F  S  M  S  L  K  L  R  I  S  L  K  I  I  L  R  F  S  R  T  A  H  F  R  V  Q  L  M  Q  Y  K  T  I  Y  P  A  L  L  R  N  L  L  Q  S  P  K  S  I  L  M  L  L  F :   Y  K  L  L  K  G  I  L  H  K  D  W  H  S  L  L  S  T  N  L  H  L  L  L  Q  S  G  N  M  C  Q  S  L  L  L  C  H  Q  F  I  R  L  I  L  L  R  G  I  L  R  Q  Q  K  R  L  Q  L  L  K  M  K  :  L  K  S  S  L  Y  M  S  K  M  F  L  P  Q  W  L  L  M  K  L  R  R  N  S  K  S  L  V  N  *  S  L  M  L  L  P  L  E  R  E  R :   T  L  M  Y  A  M  H  L  S  N  L  K  M  *  L  G  F  R  M  Q  L  R :   H  L  L  F  R  L  V  D  T  S  C  T  L  K  E  G  D  R  T  E  I  T  *  F  E  E  :  E  E  G  V  E  A  E  L  A  T  P  W  T  E  G  G  A  M  V  A  V  V  L  G  E  V  V  K  T  E  V  T  V  I  M  A  D  Q  G  E  M  V  I  I  D  K  L  L  G  R  K  E  L  T  L  A  I  S  K  A  *  E  M  S  N  T  H  G  N  K  L  E  V  E  F  M  K  D  K  Q  Y  T  F  S  T  S  H  V  A  N  S  F  F  V  F  I  V  L  Q  N  I  S  I  L  *  E  A  S  K  F  R  F  V  E  G  S  I  P  N  S  Y  N  F  F  G  R  N  S  K  C  W  F  S  V  H  E  *  T  F  T  *  R  I  I  Y  A  V  L  T  C  *  S  I  F  C  A   </second_frame>
            <third_frame>   S  A  A  L  T  L  S  L  S  R  T  S  G  L  K  R  S  L  H  F  L  S  L  E  I  V  E  S  V  T  N  E  F  S  A  I  Y  C  L  W  S  V  M  G  E  D  P  V  A  A  F  L  L  A  A  Q  M  *  M  L  *  K  S  R  V  F  F  W  G  G  F  *  I  F  W  *  I  *  F  F  L  R  F  S  L  *  L  D  *  R  V  H  F  Y  R  C  L  S  C  R  R  H  R  V  L  R  N  G  D  A  F  S  L  A  S  H  C  C  S   : G  G  D  I  L  R  G  P  V  L  S  D  V  T  D  P  T  G  F  C  S  P  V  L  Q  *  C  *  Y  C  A  S  N  *  F  Q  H  Q  R  D  C  F  R  N  A   : A  N  S  H  P  C  H  V  A  T  V  H  W  N  R  D  K  N  T  P  F  L  G  I  M  E  W  W  C  P  C  D  G  F  R  F  C  Q  C  E  R  Y  Q  *  E  *  E  V  R  S  I  I  F  P  C  T  P  G  K  R  I  L  C  P  Q  *  Y  L  S  L  C  *  *  G  A  N  S  S  A  T  I  G  L  S  S  T  F  E  P  *  F  K  A  E  C  F  Q  C  T  S  G  A  S :   A  Q  L  H  V  W  W  R  N  P  S  K  G  V  C  *  C  S  *  N  *  R  *  R  A  S  Q  *  L  *  F  S  G  G  T  A  S  A  C  L  *  S  *  E  Y  P  *  R  *  F  C  G  S  V  E  R  P  T  S  E  Y  N  *  C  S  T  R  P  F  I  L  P  C  *  G  T  C  C  R  A  P  K  A  Y  L  C  F  Y   : S  T  S  Y  *  R  E  F  C  T  R  T  G  T  V  F  S  Q  Q  I  Y  T  S  S  F  R  V  A  T  C  A  R  A  S  C  F  A  I  S  S  F  D  *  Y  Y  *  E  V  Y  *  G  N  R  R  G  F  S  C  *  R  *  S :   *  S  Q  V  C  I  C  Q  K  C  S  Y  H  N  G  C  L  *  N  *  G  G  I  Q  K  V  W  *  I  K  A  *  C  C  C  H  *  N  A  K   : G  H  *  C  M  L  C  I  C  R  I  *  R  C  N  W  G  S  E  C  N  *   : G  I  Y  C  S  D  W  W  T  P  V  V  H  *  R  K  E  T  E  Q  K  *  L  N  S  R  K :   R  K  G  *  R  Q  S  *  L  L  H  G  R  K  G  A  L  W  W  P  W  F  W  E  R  W  S  R  R  R  *  P  *  L  W  Q  I  K  G  K  W  L  L  *  T  N  S  S  A  G  K  S  L  P  *  Q  S  A  K  L  E  K  *  A  I  L  M  G  I  S  W  K  L  N  S  *  R  T  N  N  T  P  S  V  Q  A  M  L  P  T  A  F  L  S  S  *  F  S  K  T  L  V  Y  F  E  K  H  Q  N  L  D  L  W  K  E  A  S  L  I  H  I  I  F  L  A  E  I  A  S  V  G  F  Q  Y  M  N  R  L  L  L  E  G  L  F  M  Q  F  *  P  A  S  R  Y  F  A  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11092" stop="11027"/>
                    <exon start="10047" stop="9913"/>
                    <exon start="8763" stop="8457"/>
                    <exon start="7774" stop="7509"/>
                    <exon start="7402" stop="7219"/>
                    <exon start="7096" stop="6975"/>
                    <exon start="6887" stop="6822"/>
                    <exon start="6491" stop="6413"/>
                    <exon start="5254" stop="5046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAAATGFYEMATPFHLPVTAAQVGTYFVGQYYQMLQTQPDFVHQFYSDASTVLRIDSSTRETASGMLQIHTLVTSLQYTGIEIKTLHSLESWNGGVLVMVSGSVSVKGINRSRKFVQSFFLAPQEKGYFVLNDIFHYVDEEQILQQPLAYLAHSNLDSKLNVSNALQEQVPNYMFGGEIQAREFVDAPKIEDNGPVNNYSFPEERLQHVSEAENILEDNFAVQSNGPLQSTINAVQDHLSCPVEEPVAEPQKHTYASILQVTKGNSAQGLAQSSLNKSTPPPSEWQHVPEPPALPSVHSTNTIERYTEATEEASAVEDEVEVKSVYVKNVPTTMAAYEIEEEFKKFGKLKPDAVAIRTRKDIDVCYAFVEFEDVTGVQNAIEASTVQIGGHQLYIEGRRPNRNNLIRGRGRGRGRVSYSMDGRGRYGGRGFGRGGQDGGDRDYGRSRGNGYYRQTPRQERAYPSNQQSLRNEQYSWE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11328" e_stop="11027"/>
            <exon e_start="10047" e_stop="9913"/>
            <exon e_start="8592" e_stop="8539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11328" e_stop="11027" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10047" e_stop="9913" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9912" i_stop="8593" i_length="1320"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="8592" e_stop="8539" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11328" stop="11027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11326" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8592" stop="8539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG : GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG : GAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAA</gDNA_template>
            <first_frame> F  S  L  S  R  N  C  R  V  S  D  E  R  I  Q  C  Y  L  L  L  V  E  C  N  G  R  R  P  C  C  C  F  F  A  C  G  A  N  V  N  A  V  K  I  *  G  F  F  L  G  G  I  L  D  L  L  V  D  L  V  F  L  E  I  L  T  L  I  G  L  T  S  S  F  L  P  L  F  K  L  P  P  P  P  G  F  T  K  W  R  R  L  F  T  C  Q  S  L  L  L  R :   W  G  H  T  S  W  A  S  I  I  R  C  Y  R  P  N  R  I  L  F  T  S  S  T  V  M  L  V  L  C  F  E  L  I  P  A  P  E  R  L  L  Q  E  C  W :   K  K  D  T  L  S  S  M  I  S  F  T  M  L  M  R  S   </first_frame>
            <second_frame>  F  L  S  L  E  I  V  E  S  V  T  N  E  F  S  A  I  Y  C  L  W  S  V  M  G  E  D  P  V  A  A  F  L  L  A  A  Q  M  *  M  L  *  K  S  R  V  F  F  W  G  G  F  *  I  F  W  *  I  *  F  F  L  R  F  S  L  *  L  D  *  R  V  H  F  Y  R  C  L  S  C  R  R  H  R  V  L  R  N  G  D  A  F  S  L  A  S  H  C  C  S   : G  G  D  I  L  R  G  P  V  L  S  D  V  T  D  P  T  G  F  C  S  P  V  L  Q  *  C  *  Y  C  A  S  N  *  F  Q  H  Q  R  D  C  F  R  N  A   : G  K  R  I  L  C  P  Q  *  Y  L  S  L  C  *  *  G  A  </second_frame>
            <third_frame>   F  S  L  *  K  L  *  S  Q  *  R  T  N  S  V  L  F  T  A  C  G  V  *  W  E  K  T  L  L  L  L  F  C  L  R  R  K  C  E  C  C  E  N  L  G  F  F  F  G  G  D  F  R  S  F  G  R  S  S  F  S  *  D  S  H  S  N  W  I  D  E  F  I  S  T  A  V  *  A  A  A  A  T  G  F  Y  E  M  A  T  P  F  H  L  P  V  T  A  A  Q  :  V  G  T  Y  F  V  G  Q  Y  Y  Q  M  L  Q  T  Q  P  D  F  V  H  Q  F  Y  S  D  A  S  T  V  L  R  I  D  S  S  T  R  E  T  A  S  G  M  L  :  E  K  G  Y  F  V  L  N  D  I  F  H  Y  V  D  E  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11193" stop="11027"/>
                    <exon start="10047" stop="9913"/>
                    <exon start="8592" stop="8541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFFLGGILDLLVDLVFLEILTLIGLTSSFLPLFKLPPPPGFTKWRRLFTCQSLLLRWGHTSWASIIRCYRPNRILFTSSTVMLVLCFELIPAPERLLQECWKKDTLSSMISFTMLMRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15323" PGL_stop="12741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15323" e_stop="14876"/>
            <exon e_start="13810" e_stop="13709"/>
            <exon e_start="13597" e_stop="13325"/>
            <exon e_start="13136" e_stop="12741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.730" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.956"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15323" e_stop="14876" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13810" e_stop="13709" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.918" acc_prob="0.730">
            <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="13597" e_stop="13325" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="13136" e_stop="12741" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15323" stop="14876"/>
              <exon start="13810" stop="13749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15316" stop="14876"/>
              <exon start="13810" stop="13736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15197" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15178" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15049" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13325"/>
              <exon start="13136" stop="12859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E488010" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14987" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14985" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13325"/>
              <exon start="13136" stop="12859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403947" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14950" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13325"/>
              <exon start="13136" stop="12859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13477" stop="13325"/>
              <exon start="13136" stop="12741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13477" stop="13325"/>
              <exon start="13136" stop="12756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13437" stop="13325"/>
              <exon start="13136" stop="12806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGATCAAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAATAGCTTCTTCGTTTTCCAGTCTTCATTCTATACGTACTAAATCAAATTTGACTAATTCCGATCATCTACTTAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG : GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGA : GAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG : GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTAAATAGGAATATATTTTCAATTATGGAGCCTAA</gDNA_template>
            <first_frame> S  D  Q  K  L  K  F  R  R  N  H  G  G  R  S  C  H  S  N  S  F  F  V  F  Q  S  S  F  Y  T  Y  *  I  K  F  D  *  F  R  S  S  T  *  N  F  I  S  *  N  S  K  S  N  F  N  F  I  V  G  K  *  T  D  V  D  L  Q  E  V  E  G  I  A  Q  A  V  S  C  G  G  A  R  G  G  G  S  G  G  D  G  G  G  G  A  G  A  G  G  G  *  G  G  E  G  R  R  G  F  R  W  E  *  *  K  *  R  C  *  Y  *  A  L  F  W  E  F  A  V  S  L  *  *  C  T  T  C  W  D  C  S  R  L  C  *  S  *  T  C  *   : G  S  L  *  *  G  H  R  *  K  Q  R  I  C  I  C  D  N  E  Y  S  *  R  L  Q  D  S  R  R  K  S  R  W  K   : R  V  W  W  Q  N  P  K  G  E  F  L  G  *  A  *  T  K  R  T  T  L  P  R  N  R  T  Q  T  L  C  W  *  F  G  V  V  S  L  I  *  K  F  S  A  S  I  S  R  I  W  N  C  C  W  C  *  G  T  V  *  W  *  D  R  E  I  S  W  L  R  F  C  E  L  *  D  *  R  R  N  G  E  C  S  *  Q  S  Q  W  S   : G  I  G  W  K  G  I  A  S  *  L  S  T  R  E  E  T  I  R  W  D  K  I  L  C  I  L  V  V  *  V  E  I  C  H  L  H  M  N  N  F  S  S  W  I  K  M  A  K  K  A  F  T  R  S  K  G  D  V  T  I  C  I  T  S  H  I  Q  *  A  F  F  F  L  L  L  L  F  P  L  F  Y  D  L  E  R  E  C  N  C  F  Y  H  I  L  E  N  Y  *  V  I  *  Y  K  Q  L  H  *  I  M  L  G  T  Y  F  L  *  K  Y  T  K  *  I  G  I  Y  F  Q  L  W  S  L  </first_frame>
            <second_frame>  P  I  K  N  *  N  S  G  E  I  M  A  A  A  A  A  T  A  I  A  S  S  F  S  S  L  H  S  I  R  T  K  S  N  L  T  N  S  D  H  L  L  K  I  S  S  A  R  T  P  N  L  T  L  I  S  S  S  V  S  E  L  T  S  I  Y  K  K  W  R  V  L  P  R  L  S  A  A  V  A  Q  E  E  A  E  A  A  V  T  E  E  E  V  P  A  P  A  V  D  E  E  E  K  V  G  E  G  S  D  G  S  S  E  S  E  G  V  N  T  K  L  Y  F  G  N  L  P  Y  L  C  D  S  A  Q  L  A  G  I  V  Q  D  Y  A  S  P  E  L  V  E  :  V  L  Y  D  R  D  T  G  K  S  R  G  F  A  F  V  T  M  S  T  L  E  D  C  K  T  V  V  E  N  L  D  G  R  :  E  Y  G  G  R  T  L  R  V  N  F  S  D  K  P  K  P  K  E  P  L  Y  P  E  T  E  H  K  L  F  V  G  N  L  A  W  S  V  S  S  E  S  L  A  Q  A  F  Q  E  Y  G  T  V  V  G  A  R  V  L  Y  D  G  E  T  G  R  S  R  G  Y  G  F  V  S  F  E  T  R  E  E  M  E  N  A  L  N  N  L  N  G  V  :  E  L  D  G  R  A  L  R  V  S  L  A  Q  G  K  K  Q  *  D  G  T  K  F  F  V  Y  *  L  Y  K  L  K  F  A  I  Y  I  *  T  I  L  V  H  G  L  R  W  L  K  R  L  L  L  G  Q  K  E  M  *  L  F  V  L  H  H  T  Y  N  E  L  S  F  F  F  F  F  S  F  L  Y  F  M  I  *  R  E  N  V  I  V  S  I  I  F  *  K  T  I  E  S  F  S  T  S  N  F  T  R  *  C  L  G  P  I  S  C  R  N  I  L  S  K  *  E  Y  I  F  N  Y  G  A  * </second_frame>
            <third_frame>   R  S  K  I  E  I  P  A  K  S  W  R  P  Q  L  P  Q  Q  *  L  L  R  F  P  V  F  I  L  Y  V  L  N  Q  I  *  L  I  P  I  I  Y  L  K  F  H  Q  L  E  L  Q  I  *  L  *  F  H  R  R  *  V  N  *  R  R  F  T  R  S  G  G  Y  C  P  G  C  Q  L  R  W  R  K  R  R  R  K  R  R  *  R  R  R  R  C  R  R  R  R  W  M  R  R  R  R  *  E  R  V  P  M  G  V  V  K  V  K  V  L  I  L  S  F  I  L  G  I  C  R  I  F  V  I  V  H  N  L  L  G  L  F  K  T  M  L  V  L  N  L  L  R :   F  F  M  I  G  T  Q  V  K  A  E  D  L  H  L  *  Q  *  V  L  L  K  I  A  R  Q  S  S  K  I  *  M  E  E :   S  M  V  A  E  P  *  G  *  I  S  R  I  S  L  N  Q  K  N  H  F  T  P  K  Q  N  T  N  S  L  L  V  I  W  R  G  Q  S  H  L  K  V  *  R  K  H  F  K  N  M  E  L  L  L  V  L  G  Y  C  M  M  V  R  P  G  D  L  V  A  T  V  L  *  A  L  R  L  E  K  K  W  R  M  L  L  T  I  S  M  E  W :   N  W  M  E  G  H  C  E  L  A  *  H  K  G  R  N  N  K  M  G  Q  N  S  L  Y  I  S  C  I  S  *  N  L  P  S  T  Y  E  Q  F  *  F  M  D  *  D  G  *  K  G  F  Y  *  V  K  R  R  C  N  Y  L  Y  Y  I  T  H  T  M  S  F  L  F  S  S  S  S  L  S  F  I  L  *  F  R  E  R  M  *  L  F  L  S  Y  F  R  K  L  L  S  H  L  V  Q  A  T  S  L  D  N  A  W  D  L  F  L  V  E  I  Y  *  V  N  R  N  I  F  S  I  M  E  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15307" stop="14876"/>
                    <exon start="13810" stop="13709"/>
                    <exon start="13597" stop="13325"/>
                    <exon start="13136" stop="13083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSGEIMAAAAATAIASSFSSLHSIRTKSNLTNSDHLLKISSARTPNLTLISSSVSELTSIYKKWRVLPRLSAAVAQEEAEAAVTEEEVPAPAVDEEEKVGEGSDGSSESEGVNTKLYFGNLPYLCDSAQLAGIVQDYASPELVEVLYDRDTGKSRGFAFVTMSTLEDCKTVVENLDGREYGGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLAWSVSSESLAQAFQEYGTVVGARVLYDGETGRSRGYGFVSFETREEMENALNNLNGVELDGRALRVSLAQGKKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17498" PGL_stop="16070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17498" e_stop="17245"/>
            <exon e_start="16616" e_stop="16070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17498" e_stop="17245" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="16616" e_stop="16070" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17498" stop="17245"/>
              <exon start="16616" stop="16109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17498" stop="17245"/>
              <exon start="16616" stop="16114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17477" stop="17245"/>
              <exon start="16616" stop="16169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17477" stop="17245"/>
              <exon start="16616" stop="16217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17476" stop="17245"/>
              <exon start="16616" stop="16273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17476" stop="17245"/>
              <exon start="16616" stop="16300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17476" stop="17245"/>
              <exon start="16616" stop="16368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17476" stop="17245"/>
              <exon start="16616" stop="16470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17468" stop="17245"/>
              <exon start="16616" stop="16189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17424" stop="17245"/>
              <exon start="16616" stop="16084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429919" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17421" stop="17245"/>
              <exon start="16616" stop="16257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17421" stop="17245"/>
              <exon start="16616" stop="16272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17405" stop="17245"/>
              <exon start="16616" stop="16070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17387" stop="17245"/>
              <exon start="16616" stop="16230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16467" stop="16075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTCAAAACTAGCTAGCACATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG : GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGTGTTGTTCAAATATATATGATATGATTAGATTTATATA</gDNA_template>
            <first_frame> Q  L  K  T  S  *  H  I  N  F  T  S  Y  I  S  F  I  L  L  L  Q  V  W  K  N  I  *  H  Y  G  C  H  Y  L  Y  T  *  R  H  K  H  S  V  S  *  *  V  V  Q  S  F  G  Y  *  W  *  Q  S  Y  S  K  I  D  A  K  C  *  E  C  *  D  *  G  R  W  K  H  *  E  D  K  F  C  *  R :   W  S  N  K  V  F  E  A  Q  D  S  C  N  *  *  Q  E  F  G  N  K  I  F  T  Y  R  R  *  C  S  W  R  Q  I  G  I  N  Y  P  *  C  Q  I  *  T  C  W  K  W  R  L  C  L  Q  D  *  N  *  V  P  H  K  R  *  L  C  F  K  G  *  R  T  Q  *  R  K  K  T  C  H  G  T  F  Q  G  C  R  R  L  P  P  R  *  S  F  H  L  R  L  N  D  E  K  R  I  R  L  A  R  I  *  I  E  E  S  Y  *  G  V  *  V  L  V  V  F  I  L  I  L  L  L  L  L  *  S  V  C  S  F  Q  F  L  Y  N  N  N  V  M  E  R  T  L  N  K  I  R  Q  A  L  V  M  K  S  L  Y  *  T  *  N  V  L  F  K  Y  I  *  Y  D  *  I  Y  I </first_frame>
            <second_frame>  N  S  K  L  A  S  T  L  I  S  L  L  I  Y  P  L  F  Y  Y  Y  K  F  G  K  I  F  N  I  M  G  V  T  T  Y  T  H  E  D  T  S  T  V  S  P  N  R  L  F  K  A  L  V  I  D  G  D  N  L  I  P  K  L  M  P  N  V  K  N  V  E  T  E  G  D  G  S  I  K  K  I  N  F  V  E   : G  G  P  I  K  Y  L  K  H  K  I  H  A  I  D  D  K  N  L  V  T  K  Y  S  L  I  E  G  D  V  L  G  D  K  L  E  S  I  T  H  D  V  K  F  E  P  A  G  N  G  G  C  V  C  K  T  K  T  E  Y  H  T  K  G  D  Y  V  L  K  D  E  E  H  N  E  G  K  K  H  A  M  E  L  F  K  A  V  E  D  Y  L  L  A  N  P  S  I  Y  A  *  M  M  K  K  E  S  D  L  H  V  S  E  L  K  S  H  T  K  G  F  E  F  *  *  F  L  Y  L  F  C  C  C  C  C  R  V  C  V  L  S  N  F  Y  I  I  I  M  S  W  K  E  L  *  I  R  *  D  K  L  *  L  *  K  V  C  T  K  H  K  M  C  C  S  N  I  Y  D  M  I  R  F  I   </second_frame>
            <third_frame>   T  Q  N  *  L  A  H  *  F  H  F  L  Y  I  L  Y  F  I  T  T  S  L  E  K  Y  L  T  L  W  V  S  L  P  I  H  M  K  T  Q  A  Q  C  L  L  I  G  C  S  K  L  W  L  L  M  V  T  I  L  F  Q  N  *  C  Q  M  L  R  M  L  R  L  R  E  M  E  A  L  R  R  *  I  L  L  K  :  V  V  Q  *  S  I  *  S  T  R  F  M  Q  L  M  T  R  I  W  *  Q  N  I  H  L  *  K  V  M  F  L  E  T  N  W  N  Q  L  P  M  M  S  N  L  N  L  L  E  M  E  V  V  F  A  R  L  K  L  S  T  T  Q  K  V  T  M  F  *  R  M  K  N  T  M  K  E  K  N  M  P  W  N  F  S  R  L  S  K  I  T  S  S  L  I  L  P  S  T  L  K  *  *  K  K  N  Q  T  C  T  Y  L  N  *  R  V  I  L  R  G  L  S  F  S  S  F  Y  T  Y  F  V  V  V  V  V  E  C  V  F  F  P  I  S  I  *  *  *  C  H  G  K  N  F  E  *  D  K  T  S  F  S  Y  E  K  F  V  L  N  I  K  C  V  V  Q  I  Y  M  I  *  L  D  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17497" stop="17245"/>
                    <exon start="16616" stop="16318"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSKLASTLISLLIYPLFYYYKFGKIFNIMGVTTYTHEDTSTVSPNRLFKALVIDGDNLIPKLMPNVKNVETEGDGSIKKINFVEGGPIKYLKHKIHAIDDKNLVTKYSLIEGDVLGDKLESITHDVKFEPAGNGGCVCKTKTEYHTKGDYVLKDEEHNEGKKHAMELFKAVEDYLLANPSIYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19532" PGL_stop="20625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19532" e_stop="19741"/>
            <exon e_start="20049" e_stop="20625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19532" e_stop="19741" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="20049" e_stop="20625" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19532" stop="19741"/>
              <exon start="20049" stop="20246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19533" stop="19741"/>
              <exon start="20049" stop="20614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19533" stop="19741"/>
              <exon start="20049" stop="20585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19533" stop="19741"/>
              <exon start="20049" stop="20466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19533" stop="19741"/>
              <exon start="20049" stop="20419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19533" stop="19741"/>
              <exon start="20049" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19533" stop="19741"/>
              <exon start="20049" stop="20251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19534" stop="19741"/>
              <exon start="20049" stop="20362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19537" stop="19741"/>
              <exon start="20049" stop="20322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19537" stop="19741"/>
              <exon start="20049" stop="20273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19537" stop="19741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19538" stop="19741"/>
              <exon start="20049" stop="20235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19540" stop="19741"/>
              <exon start="20049" stop="20495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19541" stop="19741"/>
              <exon start="20049" stop="20457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19541" stop="19741"/>
              <exon start="20049" stop="20297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19542" stop="19741"/>
              <exon start="20049" stop="20484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19542" stop="19741"/>
              <exon start="20049" stop="20471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19543" stop="19741"/>
              <exon start="20049" stop="20302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19546" stop="19741"/>
              <exon start="20049" stop="20491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19547" stop="19741"/>
              <exon start="20049" stop="20302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19548" stop="19741"/>
              <exon start="20049" stop="20125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19551" stop="19741"/>
              <exon start="20049" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19552" stop="19741"/>
              <exon start="20049" stop="20619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19552" stop="19741"/>
              <exon start="20049" stop="20319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19741"/>
              <exon start="20049" stop="20086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19561" stop="19741"/>
              <exon start="20049" stop="20609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19561" stop="19741"/>
              <exon start="20049" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19627" stop="19741"/>
              <exon start="20049" stop="20481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19644" stop="19741"/>
              <exon start="20049" stop="20624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19645" stop="19741"/>
              <exon start="20049" stop="20625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19645" stop="19741"/>
              <exon start="20049" stop="20623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19645" stop="19741"/>
              <exon start="20049" stop="20517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20055" stop="20624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20278" stop="20618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG : GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAATTGTGG</gDNA_template>
            <first_frame> Q  H  F  I  Y  P  L  F  F  C  L  I  T  S  W  V  S  L  A  I  H  M  K  P  Q  H  Q  L  P  L  L  G  C  S  K  L  W  L  L  I  L  I  I  L  F  L  S  *  C  H  K  L  K  I  L  R  L  R  E  M  E  V  S  K  R  *  T  L  L  K  :  V  H  Q  S  S  T  *  S  T  R  F  M  L  L  M  T  R  I  W  *  P  N  I  Q  *  L  K  E  M  F  L  E  T  N  L  S  Q  F  P  M  T  *  N  L  K  L  M  E  M  E  D  V  F  A  S  L  *  L  S  I  T  Q  K  V  I  M  C  *  R  M  K  N  I  M  K  A  K  N  K  P  W  N  F  S  R  L  L  K  H  T  S  S  R  I  L  L  S  T  L  K  *  *  N  K  N  Q  V  H  T  C  Y  I  T  C  L  *  H  Y  I  I  K  Y  I  P  S  L  K  S  *  K  S  F  K  *  D  L  W  F  E  F  S  L  M  L  *  C  F  L  L  S  C  V  F  F  F  Q  V  Y  H  W  E  L  R  T  L  N  N  V  A  T  F  N  F  A  Y  Q  I  L  N  S  K  K  I  F  Y  F  S  K  I  K  I  V  </first_frame>
            <second_frame>  N  I  L  Y  I  L  F  F  F  V  *  *  H  H  G  C  H  *  L  Y  T  *  N  H  N  T  S  C  P  Y  *  V  V  Q  S  F  G  C  *  F  *  *  S  Y  S  *  V  D  A  T  S  *  K  Y  *  G  *  G  R  W  K  Y  Q  K  D  E  L  C  *  R :   F  T  N  Q  V  L  E  A  Q  D  S  C  C  *  *  Q  E  F  G  D  Q  I  F  N  D  *  R  R  C  S  W  R  Q  T  *  V  N  F  L  *  P  K  I  *  S  S  W  K  W  R  M  C  L  Q  V  Y  N  *  V  S  H  K  R  *  L  C  V  E  G  *  R  T  *  *  R  Q  K  T  S  H  G  T  F  Q  D  C  *  S  I  P  P  R  E  S  F  C  L  R  L  S  D  E  I  R  I  R  S  T  R  V  I  *  R  V  C  D  I  I  *  *  S  I  Y  P  H  *  K  V  K  N  L  L  N  E  I  Y  G  L  S  F  H  *  C  Y  S  A  F  C  *  V  V  C  S  F  S  K  F  I  I  G  N  *  E  L  L  I  M  *  Q  P  L  I  L  L  I  K  Y  L  I  V  K  K  Y  F  T  F  R  K  *  K  L  W </second_frame>
            <third_frame>   T  F  Y  I  S  S  F  F  L  S  N  N  I  M  G  V  T  S  Y  T  H  E  T  T  T  P  V  A  P  T  R  L  F  K  A  L  V  V  D  S  D  N  L  I  P  K  L  M  P  Q  V  K  N  I  E  A  E  G  D  G  S  I  K  K  M  N  F  V  E   : G  S  P  I  K  Y  L  K  H  K  I  H  V  V  D  D  K  N  L  V  T  K  Y  S  M  I  E  G  D  V  L  G  D  K  L  E  S  I  S  Y  D  L  K  F  E  A  H  G  N  G  G  C  V  C  K  S  I  T  E  Y  H  T  K  G  D  Y  V  L  K  D  E  E  H  N  E  G  K  K  Q  A  M  E  L  F  K  I  V  E  A  Y  L  L  E  N  P  S  V  Y  A  *  V  M  K  *  E  S  G  P  H  V  L  Y  N  V  F  V  T  L  Y  N  K  V  Y  T  L  I  K  K  L  K  I  F  *  M  R  F  M  V  *  V  F  I  N  V  I  V  L  F  V  E  L  C  V  L  F  P  S  L  S  L  G  I  K  N  S  *  *  C  S  N  L  *  F  C  L  S  N  T  *  *  *  K  N  I  L  L  F  E  N  K  N  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19534" stop="19741"/>
                    <exon start="20049" stop="20347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFYISSFFLSNNIMGVTSYTHETTTPVAPTRLFKALVVDSDNLIPKLMPQVKNIEAEGDGSIKKMNFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSITEYHTKGDYVLKDEEHNEGKKQAMELFKIVEAYLLENPSVYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20039" e_stop="20624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="20039" e_stop="20624" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20039" stop="20598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20039" stop="20598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20055" stop="20624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20278" stop="20618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAAATTGTG</gDNA_template>
            <first_frame> I  I  V  G  S  P  I  K  Y  L  K  H  K  I  H  V  V  D  D  K  N  L  V  T  K  Y  S  M  I  E  G  D  V  L  G  D  K  L  E  S  I  S  Y  D  L  K  F  E  A  H  G  N  G  G  C  V  C  K  S  I  T  E  Y  H  T  K  G  D  Y  V  L  K  D  E  E  H  N  E  G  K  K  Q  A  M  E  L  F  K  I  V  E  A  Y  L  L  E  N  P  S  V  Y  A  *  V  M  K  *  E  S  G  P  H  V  L  Y  N  V  F  V  T  L  Y  N  K  V  Y  T  L  I  K  K  L  K  I  F  *  M  R  F  M  V  *  V  F  I  N  V  I  V  L  F  V  E  L  C  V  L  F  P  S  L  S  L  G  I  K  N  S  *  *  C  S  N  L  *  F  C  L  S  N  T  *  *  *  K  N  I  L  L  F  E  N  K  N  C  </first_frame>
            <second_frame>  *  L  *  V  H  Q  S  S  T  *  S  T  R  F  M  L  L  M  T  R  I  W  *  P  N  I  Q  *  L  K  E  M  F  L  E  T  N  L  S  Q  F  P  M  T  *  N  L  K  L  M  E  M  E  D  V  F  A  S  L  *  L  S  I  T  Q  K  V  I  M  C  *  R  M  K  N  I  M  K  A  K  N  K  P  W  N  F  S  R  L  L  K  H  T  S  S  R  I  L  L  S  T  L  K  *  *  N  K  N  Q  V  H  T  C  Y  I  T  C  L  *  H  Y  I  I  K  Y  I  P  S  L  K  S  *  K  S  F  K  *  D  L  W  F  E  F  S  L  M  L  *  C  F  L  L  S  C  V  F  F  F  Q  V  Y  H  W  E  L  R  T  L  N  N  V  A  T  F  N  F  A  Y  Q  I  L  N  S  K  K  I  F  Y  F  S  K  I  K  I  V </second_frame>
            <third_frame>   N  C  R  F  T  N  Q  V  L  E  A  Q  D  S  C  C  *  *  Q  E  F  G  D  Q  I  F  N  D  *  R  R  C  S  W  R  Q  T  *  V  N  F  L  *  P  K  I  *  S  S  W  K  W  R  M  C  L  Q  V  Y  N  *  V  S  H  K  R  *  L  C  V  E  G  *  R  T  *  *  R  Q  K  T  S  H  G  T  F  Q  D  C  *  S  I  P  P  R  E  S  F  C  L  R  L  S  D  E  I  R  I  R  S  T  R  V  I  *  R  V  C  D  I  I  *  *  S  I  Y  P  H  *  K  V  K  N  L  L  N  E  I  Y  G  L  S  F  H  *  C  Y  S  A  F  C  *  V  V  C  S  F  S  K  F  I  I  G  N  *  E  L  L  I  M  *  Q  P  L  I  L  L  I  K  Y  L  I  V  K  K  Y  F  T  F  R  K  *  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20039" stop="20347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSITEYHTKGDYVLKDEEHNEGKKQAMELFKIVEAYLLENPSVYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="20613" PGL_stop="20235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20613" e_stop="20235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="20613" e_stop="20235" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20613" stop="20235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCGAAAAGTAAAATATTTTTTTACTATTAAGTATTTGATAAGCAAAATTAAAGGTTGCTACATTATTAAGAGTTCTTAATTCCCAATGATAAACTTGGAAAAAGAACACACAACTCAACAAAAAGCACTATAACATTAATGAAAACTCAAACCATAAATCTCATTTAAAAGATTTTTAACTTTTTAATGAGGGTATATACTTTATTATATAATGTCACAAACACGTTATATAACACGTGTGGACCTGATTCTTATTTCATCACTTAAGCGTAGACAGAAGGATTCTCGAGGAGGTATGCTTCAACAATCTTGAAAAGTTCCATGGCTTGTTTTTTGCCTTCATTATGTTCTTCATCCTTCAACACATAATCACCTT</gDNA_template>
            <first_frame> F  S  K  S  K  I  F  F  Y  Y  *  V  F  D  K  Q  N  *  R  L  L  H  Y  *  E  F  L  I  P  N  D  K  L  G  K  R  T  H  N  S  T  K  S  T  I  T  L  M  K  T  Q  T  I  N  L  I  *  K  I  F  N  F  L  M  R  V  Y  T  L  L  Y  N  V  T  N  T  L  Y  N  T  C  G  P  D  S  Y  F  I  T  *  A  *  T  E  G  F  S  R  R  Y  A  S  T  I  L  K  S  S  M  A  C  F  L  P  S  L  C  S  S  S  F  N  T  *  S  P  </first_frame>
            <second_frame>  F  R  K  V  K  Y  F  F  T  I  K  Y  L  I  S  K  I  K  G  C  Y  I  I  K  S  S  *  F  P  M  I  N  L  E  K  E  H  T  T  Q  Q  K  A  L  *  H  *  *  K  L  K  P  *  I  S  F  K  R  F  L  T  F  *  *  G  Y  I  L  Y  Y  I  M  S  Q  T  R  Y  I  T  R  V  D  L  I  L  I  S  S  L  K  R  R  Q  K  D  S  R  G  G  M  L  Q  Q  S  *  K  V  P  W  L  V  F  C  L  H  Y  V  L  H  P  S  T  H  N  H  L </second_frame>
            <third_frame>   F  E  K  *  N  I  F  L  L  L  S  I  *  *  A  K  L  K  V  A  T  L  L  R  V  L  N  S  Q  *  *  T  W  K  K  N  T  Q  L  N  K  K  H  Y  N  I  N  E  N  S  N  H  K  S  H  L  K  D  F  *  L  F  N  E  G  I  Y  F  I  I  *  C  H  K  H  V  I  *  H  V  W  T  *  F  L  F  H  H  L  S  V  D  R  R  I  L  E  E  V  C  F  N  N  L  E  K  F  H  G  L  F  F  A  F  I  M  F  F  I  L  Q  H  I  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="20892" PGL_stop="25568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20892" e_stop="21194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="20892" e_stop="21194" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20892" stop="21194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20892" stop="21194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20892" stop="21194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</gDNA_template>
            <first_frame> A  E  L  S  N  V  G  L  *  P  K  W  G  H  *  C  G  G  M  L  G  C  T  R  W  L  G  L  V  G  *  F  L  T  C  P  I  Q  A  *  S  W  I  M  W  P  N  *  R  N  G  L  L  D  S  *  S  G  A  E  C  V  R  L  V  S  Q  S  N  D  K  F  P  L  *  A  V  E  G  *  R  V  G  V  L  *  V  Q  *  R  L  M  G  C  S  N  *  T  T  I  F </first_frame>
            <second_frame>  P  S  L  V  M  W  A  C  N  P  N  G  G  I  N  V  V  E  C  W  A  V  P  D  G  W  A  W  W  A  N  F  *  L  A  L  S  K  L  R  V  G  S  C  G  P  I  E  E  M  D  Y  L  I  R  K  V  G  R  N  A  *  G  W  F  H  R  A  T  I  S  F  R  S  K  R  W  K  D  N  E  S  V  F  S  E  S  S  N  A  *  W  V  A  P  I  K  P  P  F   </second_frame>
            <third_frame>   R  A  *  *  C  G  L  V  T  Q  M  G  A  L  M  W  W  N  V  G  L  Y  Q  M  V  G  L  G  G  L  I  S  D  L  P  Y  P  S  L  E  L  D  H  V  A  Q  L  K  K  W  T  T  *  F  V  K  W  G  G  M  R  E  A  G  F  T  E  Q  R  *  V  S  A  L  S  G  G  R  I  T  S  R  C  S  L  S  P  V  T  P  D  G  L  L  Q  L  N  H  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23558" e_stop="24193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="23558" e_stop="24193" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23558" stop="24193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGTGTGGTTAAAAAACCACTTAATATGTATACATATATAGTTTATCGAGAATCCAATAAGCTATGTGTTCTACATCGAGAACTCAGACTCAAAAATCAAGCTCCGCCTCTGCGCTGGAGCAACTCAAATAGACAACAAAAGCTGTCTATTTATAGCATTTTAGTCCATGAAGCCAAGAATGGGAACATGGAAATCAATAATCTTAACAAAAGGGGCGTATCGCTAGTCGCTTCTGGTCTACTTAACTTACCTTTTTCCACAGGTATTTTTGCTGTTTCAGCTGATGATTTATCTGAACTTTTGCTAGATTGCATTTCTTGATCAAGTTCATCCCACCCTCCGAATCTAGATACCTCTCGGTCATCCTTACTAGCTGAAACGTCACTGTTGGACACCCATGATTGATAGCCCGTCTTTCTCTTTCGTGTCTTGGAGCTTCCTCCTCTTCTCCAAAAGTTTGTCTTGCTTGAGTTGGGAGCAGCGCGTTGTCTCTTCTTAGCTGTACTCTTGCGCGTTGGTTTGTTTTGTATCACGTCCAGTATCTTTTGGATTGCAAAGAAAAGCGTAGACTGTCCAATGGGAAGGGCGAATGCCATAGCAAAAGCTTTAGCTCCTCCAGTAGAAATCAATACTA</gDNA_template>
            <first_frame> Y  V  W  L  K  N  H  L  I  C  I  H  I  *  F  I  E  N  P  I  S  Y  V  F  Y  I  E  N  S  D  S  K  I  K  L  R  L  C  A  G  A  T  Q  I  D  N  K  S  C  L  F  I  A  F  *  S  M  K  P  R  M  G  T  W  K  S  I  I  L  T  K  G  A  Y  R  *  S  L  L  V  Y  L  T  Y  L  F  P  Q  V  F  L  L  F  Q  L  M  I  Y  L  N  F  C  *  I  A  F  L  D  Q  V  H  P  T  L  R  I  *  I  P  L  G  H  P  Y  *  L  K  R  H  C  W  T  P  M  I  D  S  P  S  F  S  F  V  S  W  S  F  L  L  F  S  K  S  L  S  C  L  S  W  E  Q  R  V  V  S  S  *  L  Y  S  C  A  L  V  C  F  V  S  R  P  V  S  F  G  L  Q  R  K  A  *  T  V  Q  W  E  G  R  M  P  *  Q  K  L  *  L  L  Q  *  K  S  I  L </first_frame>
            <second_frame>  M  C  G  *  K  T  T  *  Y  V  Y  I  Y  S  L  S  R  I  Q  *  A  M  C  S  T  S  R  T  Q  T  Q  K  S  S  S  A  S  A  L  E  Q  L  K  *  T  T  K  A  V  Y  L  *  H  F  S  P  *  S  Q  E  W  E  H  G  N  Q  *  S  *  Q  K  G  R  I  A  S  R  F  W  S  T  *  L  T  F  F  H  R  Y  F  C  C  F  S  *  *  F  I  *  T  F  A  R  L  H  F  L  I  K  F  I  P  P  S  E  S  R  Y  L  S  V  I  L  T  S  *  N  V  T  V  G  H  P  *  L  I  A  R  L  S  L  S  C  L  G  A  S  S  S  S  P  K  V  C  L  A  *  V  G  S  S  A  L  S  L  L  S  C  T  L  A  R  W  F  V  L  Y  H  V  Q  Y  L  L  D  C  K  E  K  R  R  L  S  N  G  K  G  E  C  H  S  K  S  F  S  S  S  S  R  N  Q  Y   </second_frame>
            <third_frame>   C  V  V  K  K  P  L  N  M  Y  T  Y  I  V  Y  R  E  S  N  K  L  C  V  L  H  R  E  L  R  L  K  N  Q  A  P  P  L  R  W  S  N  S  N  R  Q  Q  K  L  S  I  Y  S  I  L  V  H  E  A  K  N  G  N  M  E  I  N  N  L  N  K  R  G  V  S  L  V  A  S  G  L  L  N  L  P  F  S  T  G  I  F  A  V  S  A  D  D  L  S  E  L  L  L  D  C  I  S  *  S  S  S  S  H  P  P  N  L  D  T  S  R  S  S  L  L  A  E  T  S  L  L  D  T  H  D  *  *  P  V  F  L  F  R  V  L  E  L  P  P  L  L  Q  K  F  V  L  L  E  L  G  A  A  R  C  L  F  L  A  V  L  L  R  V  G  L  F  C  I  T  S  S  I  F  W  I  A  K  K  S  V  D  C  P  M  G  R  A  N  A  I  A  K  A  L  A  P  P  V  E  I  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23560" stop="23880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVVKKPLNMYTYIVYRESNKLCVLHRELRLKNQAPPLRWSNSNRQQKLSIYSILVHEAKNGNMEINNLNKRGVSLVASGLLNLPFSTGIFAVSADDLSELLLDCIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23968" stop="24192"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVFLFRVLELPPLLQKFVLLELGAARCLFLAVLLRVGLFCITSSIFWIAKKSVDCPMGRANAIAKALAPPVEINT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23043" e_stop="23290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="23043" e_stop="23290" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23043" stop="23290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACCAGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCTGATGGGCTGCTCCAACTAAACCACCACTTT</gDNA_template>
            <first_frame> V  G  L  T  Q  M  V  G  F  G  R  L  I  V  W  P  A  L  S  K  H  G  V  G  S  R  G  L  V  E  R  P  G  C  L  I  P  K  V  G  W  T  A  *  G  W  F  H  R  A  T  N  S  F  R  S  V  Q  W  K  D  N  G  S  V  L  S  E  S  S  *  R  L  M  G  C  S  N  *  T  T  T   </first_frame>
            <second_frame>  L  G  *  P  R  W  L  G  S  V  G  L  *  S  G  L  P  S  P  S  M  E  L  D  H  V  A  *  S  K  D  Q  V  A  *  F  L  K  W  G  G  L  R  E  A  G  F  T  E  Q  R  T  A  S  A  L  C  S  G  R  I  T  G  Q  C  S  A  S  P  V  N  A  *  W  A  A  P  T  K  P  P  L  </second_frame>
            <third_frame>   W  V  D  P  D  G  W  V  R  *  A  Y  S  L  A  C  P  L  Q  A  W  S  W  I  T  W  L  S  R  K  T  R  L  L  D  S  *  S  G  V  D  C  V  R  L  V  S  Q  S  N  E  Q  L  P  L  C  A  V  E  G  *  R  V  S  A  Q  R  V  Q  L  T  P  D  G  L  L  Q  L  N  H  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="20919" e_stop="21109"/>
            <exon e_start="25179" e_stop="25185"/>
            <exon e_start="25535" e_stop="25566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="0.911"/>
          <exon-intron don_prob="0.407" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.719"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="20919" e_stop="21109" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="21110" i_stop="25178" i_length="4069"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="25179" e_stop="25185" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.407" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25186" i_stop="25534" i_length="349"/>
          </intron>
          <exon e_serial="3" e_score="0.719">
            <gDNA_exon_boundary e_start="25535" e_stop="25566" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20919" stop="21109"/>
              <exon start="25179" stop="25185"/>
              <exon start="25535" stop="25566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCC : GTTAAAA : AAAAAGAAACCAAACTTCACAGGAAAAAAAAA</gDNA_template>
            <first_frame> P  K  W  G  H  *  C  G  G  M  L  G  C  T  R  W  L  G  L  V  G  *  F  L  T  C  P  I  Q  A  *  S  W  I  M  W  P  N  *  R  N  G  L  L  D  S  *  S  G  A  E  C  V  R  L  V  S  Q  S  N  D  K  F  P :   L  K  :  K  K  K  P  N  F  T  G  K  K   </first_frame>
            <second_frame>  P  N  G  G  I  N  V  V  E  C  W  A  V  P  D  G  W  A  W  W  A  N  F  *  L  A  L  S  K  L  R  V  G  S  C  G  P  I  E  E  M  D  Y  L  I  R  K  V  G  R  N  A  *  G  W  F  H  R  A  T  I  S  F   : R  *  K :   K  R  N  Q  T  S  Q  E  K  K  </second_frame>
            <third_frame>   Q  M  G  A  L  M  W  W  N  V  G  L  Y  Q  M  V  G  L  G  G  L  I  S  D  L  P  Y  P  S  L  E  L  D  H  V  A  Q  L  K  K  W  T  T  *  F  V  K  W  G  G  M  R  E  A  G  F  T  E  Q  R  *  V  S  :  V  K   : K  K  E  T  K  L  H  R  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="20914" e_stop="21043"/>
            <exon e_start="23140" e_stop="23287"/>
            <exon e_start="25179" e_stop="25185"/>
            <exon e_start="25535" e_stop="25568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="0.939"/>
          <exon-intron don_prob="0.407" acc_prob="0.000" e_score="0.857"/>
          <exon-only e_score="0.676"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="20914" e_stop="21043" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21044" i_stop="23139" i_length="2096"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="23140" e_stop="23287" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="23288" i_stop="25178" i_length="1891"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="25179" e_stop="25185" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.407" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25186" i_stop="25534" i_length="349"/>
          </intron>
          <exon e_serial="4" e_score="0.676">
            <gDNA_exon_boundary e_start="25535" e_stop="25568" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="21043"/>
              <exon start="23140" stop="23287"/>
              <exon start="25179" stop="25185"/>
              <exon start="25535" stop="25568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGG : GTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCTGATGGGCTGCTCCAACTAAACCACCAC : GTTAAAA : AAAAAGAAACCAAACTTCACAGGAAAAAAAAACA</gDNA_template>
            <first_frame> C  N  P  N  G  G  I  N  V  V  E  C  W  A  V  P  D  G  W  A  W  W  A  N  F  *  L  A  L  S  K  L  R  V  G  S  C  G  P  I  E  E  M   : G  C  L  I  P  K  V  G  W  T  A  *  G  W  F  H  R  A  T  N  S  F  R  S  V  Q  W  K  D  N  G  S  V  L  S  E  S  S  *  R  L  M  G  C  S  N  *  T  T  T :   L  K  :  K  K  K  P  N  F  T  G  K  K  N  </first_frame>
            <second_frame>  V  T  Q  M  G  A  L  M  W  W  N  V  G  L  Y  Q  M  V  G  L  G  G  L  I  S  D  L  P  Y  P  S  L  E  L  D  H  V  A  Q  L  K  K  W  :  V  A  *  F  L  K  W  G  G  L  R  E  A  G  F  T  E  Q  R  T  A  S  A  L  C  S  G  R  I  T  G  Q  C  S  A  S  P  V  N  A  *  W  A  A  P  T  K  P  P   : R  *  K :   K  R  N  Q  T  S  Q  E  K  K  T </second_frame>
            <third_frame>   *  P  K  W  G  H  *  C  G  G  M  L  G  C  T  R  W  L  G  L  V  G  *  F  L  T  C  P  I  Q  A  *  S  W  I  M  W  P  N  *  R  N  G :   L  L  D  S  *  S  G  V  D  C  V  R  L  V  S  Q  S  N  E  Q  L  P  L  C  A  V  E  G  *  R  V  S  A  Q  R  V  Q  L  T  P  D  G  L  L  Q  L  N  H  H  :  V  K   : K  K  E  T  K  L  H  R  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25974" PGL_stop="23449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25960" e_stop="25625"/>
            <exon e_start="24238" e_stop="23449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25960" e_stop="25625" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25624" i_stop="24239" i_length="1386"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24238" e_stop="23449" e_length="790"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25960" stop="25625"/>
              <exon start="24238" stop="23709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25896" stop="25625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25885" stop="25625"/>
              <exon start="24238" stop="23740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25885" stop="25625"/>
              <exon start="24238" stop="23748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25885" stop="25625"/>
              <exon start="24238" stop="23832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23957" stop="23449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23811" stop="23449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG : TGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</gDNA_template>
            <first_frame> L  K  T  T  I  N  R  G  D  G  G  L  L  H  L  H  L  P  L  N  P  S  P  S  P  L  L  F  F  T  Q  K  P  I  S  L  N  P  L  N  P  L  S  S  H  L  L  L  Q  K  Q  Q  Q  P  L  H  I  C  C  S  R  P  S  S  K  W  D  S  N  A  E  S  I  K  N  Q  N  F  N  N  L  E  D  E  E  E  E  L  D  E  E  E  F  L  E  Q  G  A  Q  F  F  A  E  Y  I  E  S  I  W  I  F  K  :  C  R  S  S  A  P  T  V  L  C  *  Y  Q  F  *  *  Y  *  F  L  L  E  E  L  K  L  L  L  W  H  S  P  F  P  L  D  S  L  R  F  S  L  Q  S  K  R  Y  W  T  *  Y  K  T  N  Q  R  A  R  V  Q  L  R  R  D  N  A  L  L  P  T  Q  A  R  Q  T  F  G  E  E  E  E  A  P  R  H  E  R  E  R  R  A  I  N  H  G  C  P  T  V  T  F  Q  L  V  R  M  T  E  R  Y  L  D  S  E  G  G  M  N  L  I  K  K  C  N  L  A  K  V  Q  I  N  H  Q  L  K  Q  Q  K  Y  L  W  K  K  V  S  *  V  D  Q  K  R  L  A  I  R  P  F  C  *  D  Y  *  F  P  C  S  H  S  W  L  H  G  L  K  C  Y  K  *  T  A  F  V  V  Y  L  S  C  S  S  A  E  A  E  L  D  F  *  V  *  V  L  D  V  E  H  I  A  Y  W  I  L  D  K  L  Y  M  Y  T  Y  *  V  V  F  *  P  H  I  Q  S  S  S  L  E  F  *  V  N  E  F  W  M  *  K  T  *  L  I  G  F  S  I  N  C  M  F  T  *  L  S  G  F  L  T  </first_frame>
            <second_frame>  *  R  P  P  S  I  G  V  M  V  V  F  F  I  F  T  Y  P  *  T  P  A  L  H  L  F  F  S  L  L  K  N  P  F  L  *  T  L  *  I  H  S  L  L  I  F  C  C  R  S  S  S  S  P  F  T  S  A  A  V  G  L  L  V  S  G  T  Q  M  L  S  P  S  R  T  R  I  L  I  I  L  K  M  R  K  R  S  L  M  R  R  N  S  W  N  K  E  L  N  F  L  L  S  I  L  K  V  F  G  S  L  S :   A  G  L  L  L  L  R  F  C  V  N  T  N  S  N  S  I  D  F  Y  W  R  S  *  S  F  C  Y  G  I  R  P  S  H  W  T  V  Y  A  F  L  C  N  P  K  D  T  G  R  D  T  K  Q  T  N  A  Q  E  Y  S  *  E  E  T  T  R  C  S  Q  L  K  Q  D  K  L  L  E  K  R  R  K  L  Q  D  T  K  E  K  D  G  L  S  I  M  G  V  Q  Q  *  R  F  S  *  *  G  *  P  R  G  I  *  I  R  R  V  G  *  T  *  S  R  N  A  I  *  Q  K  F  R  *  I  I  S  *  N  S  K  N  T  C  G  K  R  *  V  K  *  T  R  S  D  *  R  Y  A  P  F  V  K  I  I  D  F  H  V  P  I  L  G  F  M  D  *  N  A  I  N  R  Q  L  L  L  S  I  *  V  A  P  A  Q  R  R  S  L  I  F  E  S  E  F  S  M  *  N  T  *  L  I  G  F  S  I  N  Y  I  C  I  H  I  K  W  F  F  N  H  T  Y  R  V  R  A  *  N  F  E  S  M  S  S  G  C  R  K  H  S  L  L  G  S  R  *  T  V  C  L  H  N  *  V  A  F  *  P </second_frame>
            <third_frame>   E  D  H  H  Q  *  G  *  W  W  S  S  S  S  S  L  T  L  K  P  Q  P  F  T  S  S  F  L  Y  S  K  T  H  F  F  K  P  S  K  S  T  L  F  S  S  S  A  A  E  A  A  A  A  P  S  H  L  L  Q  *  A  F  *  *  V  G  L  K  C  *  V  H  Q  E  P  E  F  *  *  S  *  R  *  G  R  G  A  *  *  G  G  I  L  G  T  R  S  S  I  F  C  *  V  Y  *  K  Y  L  D  L  *   : V  Q  V  F  C  S  Y  G  F  V  L  I  P  I  L  I  V  L  I  S  T  G  G  A  K  A  F  A  M  A  F  A  L  P  I  G  Q  S  T  L  F  F  A  I  Q  K  I  L  D  V  I  Q  N  K  P  T  R  K  S  T  A  K  K  R  Q  R  A  A  P  N  S  S  K  T  N  F  W  R  R  G  G  S  S  K  T  R  K  R  K  T  G  Y  Q  S  W  V  S  N  S  D  V  S  A  S  K  D  D  R  E  V  S  R  F  G  G  W  D  E  L  D  Q  E  M  Q  S  S  K  S  S  D  K  S  S  A  E  T  A  K  I  P  V  E  K  G  K  L  S  R  P  E  A  T  S  D  T  P  L  L  L  R  L  L  I  S  M  F  P  F  L  A  S  W  T  K  M  L  *  I  D  S  F  C  C  L  F  E  L  L  Q  R  R  G  G  A  *  F  L  S  L  S  S  R  C  R  T  H  S  L  L  D  S  R  *  T  I  Y  V  Y  I  L  S  G  F  L  T  T  H  T  E  F  E  P  R  I  L  S  Q  *  V  L  D  V  E  N  I  A  Y  W  V  L  D  K  L  Y  V  Y  I  I  K  W  L  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25625" stop="23709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQVFCSYGFVLIPILIVLISTGGAKAFAMAFALPIGQSTLFFAIQKILDVIQNKPTRKSTAKKRQRAAPNSSKTNFWRRGGSSKTRKRKTGYQSWVSNSDVSASKDDREVSRFGGWDELDQEMQSSKSSDKSSAETAKIPVEKGKLSRPEATSDTPLLLRLLISMFPFLASWTKML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25974" e_stop="25625"/>
            <exon e_start="24233" e_stop="23449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25974" e_stop="25625" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25624" i_stop="24234" i_length="1391"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="24233" e_stop="23449" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25974" stop="25625"/>
              <exon start="24233" stop="24011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25896" stop="25625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25886" stop="25625"/>
              <exon start="24233" stop="23820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25883" stop="25625"/>
              <exon start="24233" stop="23973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23957" stop="23449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23811" stop="23449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAATGGAATGGACTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG : GTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</gDNA_template>
            <first_frame> A  N  G  M  D  *  R  P  P  S  I  G  V  M  V  V  F  F  I  F  T  Y  P  *  T  P  A  L  H  L  F  F  S  L  L  K  N  P  F  L  *  T  L  *  I  H  S  L  L  I  F  C  C  R  S  S  S  S  P  F  T  S  A  A  V  G  L  L  V  S  G  T  Q  M  L  S  P  S  R  T  R  I  L  I  I  L  K  M  R  K  R  S  L  M  R  R  N  S  W  N  K  E  L  N  F  L  L  S  I  L  K  V  F  G  S  L  R :   S  S  A  P  T  V  L  C  *  Y  Q  F  *  *  Y  *  F  L  L  E  E  L  K  L  L  L  W  H  S  P  F  P  L  D  S  L  R  F  S  L  Q  S  K  R  Y  W  T  *  Y  K  T  N  Q  R  A  R  V  Q  L  R  R  D  N  A  L  L  P  T  Q  A  R  Q  T  F  G  E  E  E  E  A  P  R  H  E  R  E  R  R  A  I  N  H  G  C  P  T  V  T  F  Q  L  V  R  M  T  E  R  Y  L  D  S  E  G  G  M  N  L  I  K  K  C  N  L  A  K  V  Q  I  N  H  Q  L  K  Q  Q  K  Y  L  W  K  K  V  S  *  V  D  Q  K  R  L  A  I  R  P  F  C  *  D  Y  *  F  P  C  S  H  S  W  L  H  G  L  K  C  Y  K  *  T  A  F  V  V  Y  L  S  C  S  S  A  E  A  E  L  D  F  *  V  *  V  L  D  V  E  H  I  A  Y  W  I  L  D  K  L  Y  M  Y  T  Y  *  V  V  F  *  P  H  I  Q  S  S  S  L  E  F  *  V  N  E  F  W  M  *  K  T  *  L  I  G  F  S  I  N  C  M  F  T  *  L  S  G  F  L  T  </first_frame>
            <second_frame>  P  M  E  W  T  E  D  H  H  Q  *  G  *  W  W  S  S  S  S  S  L  T  L  K  P  Q  P  F  T  S  S  F  L  Y  S  K  T  H  F  F  K  P  S  K  S  T  L  F  S  S  S  A  A  E  A  A  A  A  P  S  H  L  L  Q  *  A  F  *  *  V  G  L  K  C  *  V  H  Q  E  P  E  F  *  *  S  *  R  *  G  R  G  A  *  *  G  G  I  L  G  T  R  S  S  I  F  C  *  V  Y  *  K  Y  L  D  L  *   : G  L  L  L  L  R  F  C  V  N  T  N  S  N  S  I  D  F  Y  W  R  S  *  S  F  C  Y  G  I  R  P  S  H  W  T  V  Y  A  F  L  C  N  P  K  D  T  G  R  D  T  K  Q  T  N  A  Q  E  Y  S  *  E  E  T  T  R  C  S  Q  L  K  Q  D  K  L  L  E  K  R  R  K  L  Q  D  T  K  E  K  D  G  L  S  I  M  G  V  Q  Q  *  R  F  S  *  *  G  *  P  R  G  I  *  I  R  R  V  G  *  T  *  S  R  N  A  I  *  Q  K  F  R  *  I  I  S  *  N  S  K  N  T  C  G  K  R  *  V  K  *  T  R  S  D  *  R  Y  A  P  F  V  K  I  I  D  F  H  V  P  I  L  G  F  M  D  *  N  A  I  N  R  Q  L  L  L  S  I  *  V  A  P  A  Q  R  R  S  L  I  F  E  S  E  F  S  M  *  N  T  *  L  I  G  F  S  I  N  Y  I  C  I  H  I  K  W  F  F  N  H  T  Y  R  V  R  A  *  N  F  E  S  M  S  S  G  C  R  K  H  S  L  L  G  S  R  *  T  V  C  L  H  N  *  V  A  F  *  P </second_frame>
            <third_frame>   Q  W  N  G  L  K  T  T  I  N  R  G  D  G  G  L  L  H  L  H  L  P  L  N  P  S  P  S  P  L  L  F  F  T  Q  K  P  I  S  L  N  P  L  N  P  L  S  S  H  L  L  L  Q  K  Q  Q  Q  P  L  H  I  C  C  S  R  P  S  S  K  W  D  S  N  A  E  S  I  K  N  Q  N  F  N  N  L  E  D  E  E  E  E  L  D  E  E  E  F  L  E  Q  G  A  Q  F  F  A  E  Y  I  E  S  I  W  I  F  K  :  V  F  C  S  Y  G  F  V  L  I  P  I  L  I  V  L  I  S  T  G  G  A  K  A  F  A  M  A  F  A  L  P  I  G  Q  S  T  L  F  F  A  I  Q  K  I  L  D  V  I  Q  N  K  P  T  R  K  S  T  A  K  K  R  Q  R  A  A  P  N  S  S  K  T  N  F  W  R  R  G  G  S  S  K  T  R  K  R  K  T  G  Y  Q  S  W  V  S  N  S  D  V  S  A  S  K  D  D  R  E  V  S  R  F  G  G  W  D  E  L  D  Q  E  M  Q  S  S  K  S  S  D  K  S  S  A  E  T  A  K  I  P  V  E  K  G  K  L  S  R  P  E  A  T  S  D  T  P  L  L  L  R  L  L  I  S  M  F  P  F  L  A  S  W  T  K  M  L  *  I  D  S  F  C  C  L  F  E  L  L  Q  R  R  G  G  A  *  F  L  S  L  S  S  R  C  R  T  H  S  L  L  D  S  R  *  T  I  Y  V  Y  I  L  S  G  F  L  T  T  H  T  E  F  E  P  R  I  L  S  Q  *  V  L  D  V  E  N  I  A  Y  W  V  L  D  K  L  Y  V  Y  I  I  K  W  L  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25972" stop="25625"/>
                    <exon start="24233" stop="23709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWNGLKTTINRGDGGLLHLHLPLNPSPSPLLFFTQKPISLNPLNPLSSHLLLQKQQQPLHICCSRPSSKWDSNAESIKNQNFNNLEDEEEELDEEEFLEQGAQFFAEYIESIWIFKVFCSYGFVLIPILIVLISTGGAKAFAMAFALPIGQSTLFFAIQKILDVIQNKPTRKSTAKKRQRAAPNSSKTNFWRRGGSSKTRKRKTGYQSWVSNSDVSASKDDREVSRFGGWDELDQEMQSSKSSDKSSAETAKIPVEKGKLSRPEATSDTPLLLRLLISMFPFLASWTKML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="26498" PGL_stop="26961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26498" e_stop="26961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="26498" e_stop="26961" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26498" stop="26961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26501" stop="26949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTCTTTTTCTTTCTTTTACCATTAGTCTACAAAACAGAAACCATTAAAAAGTACAAAATGTTGAATACATAATATATAAACACTTGCATGTTTGTGGCTGGAAATTTTCTTTTTTTTCTTCTTGAACCTTCACTTGAAAGAAAACCAACTAGTCTATTTCAATTTCTGATGTACATTTGAAGCCATATATCAATACAACGAAATGTCAAACTTTGCAGAAACAGCAATCCCAACTTTTCGACGACATTTCCTCTTCTATCATGTTAGTATTTTCTCAGCTCTCCTGAAGCCACCTTAAGCACAACGATTTTTGCACTCTCTTGTAGCACGAAAAAGATCAGTCAGTCTGTAATGTCTAACGTAAGTACACAACCGGAAGTAAAAATCCTCTCTTTGCCACCAGTGGCACACATTCAACCAACTATACAGCAAACCATCAGCAACACACTCAACTTTGAAG</gDNA_template>
            <first_frame> S  F  L  F  L  S  F  T  I  S  L  Q  N  R  N  H  *  K  V  Q  N  V  E  Y  I  I  Y  K  H  L  H  V  C  G  W  K  F  S  F  F  S  S  *  T  F  T  *  K  K  T  N  *  S  I  S  I  S  D  V  H  L  K  P  Y  I  N  T  T  K  C  Q  T  L  Q  K  Q  Q  S  Q  L  F  D  D  I  S  S  S  I  M  L  V  F  S  Q  L  S  *  S  H  L  K  H  N  D  F  C  T  L  L  *  H  E  K  D  Q  S  V  C  N  V  *  R  K  Y  T  T  G  S  K  N  P  L  F  A  T  S  G  T  H  S  T  N  Y  T  A  N  H  Q  Q  H  T  Q  L  *   </first_frame>
            <second_frame>  L  F  F  F  F  L  L  P  L  V  Y  K  T  E  T  I  K  K  Y  K  M  L  N  T  *  Y  I  N  T  C  M  F  V  A  G  N  F  L  F  F  L  L  E  P  S  L  E  R  K  P  T  S  L  F  Q  F  L  M  Y  I  *  S  H  I  S  I  Q  R  N  V  K  L  C  R  N  S  N  P  N  F  S  T  T  F  P  L  L  S  C  *  Y  F  L  S  S  P  E  A  T  L  S  T  T  I  F  A  L  S  C  S  T  K  K  I  S  Q  S  V  M  S  N  V  S  T  Q  P  E  V  K  I  L  S  L  P  P  V  A  H  I  Q  P  T  I  Q  Q  T  I  S  N  T  L  N  F  E  </second_frame>
            <third_frame>   F  S  F  S  F  F  Y  H  *  S  T  K  Q  K  P  L  K  S  T  K  C  *  I  H  N  I  *  T  L  A  C  L  W  L  E  I  F  F  F  F  F  L  N  L  H  L  K  E  N  Q  L  V  Y  F  N  F  *  C  T  F  E  A  I  Y  Q  Y  N  E  M  S  N  F  A  E  T  A  I  P  T  F  R  R  H  F  L  F  Y  H  V  S  I  F  S  A  L  L  K  P  P  *  A  Q  R  F  L  H  S  L  V  A  R  K  R  S  V  S  L  *  C  L  T  *  V  H  N  R  K  *  K  S  S  L  C  H  Q  W  H  T  F  N  Q  L  Y  S  K  P  S  A  T  H  S  T  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26769" stop="26960"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFLSSPEATLSTTIFALSCSTKKISQSVMSNVSTQPEVKILSLPPVAHIQPTIQQTISNTLNFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="31936" PGL_stop="26502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31936" e_stop="31212"/>
            <exon e_start="30917" e_stop="30723"/>
            <exon e_start="30589" e_stop="30529"/>
            <exon e_start="29912" e_stop="29799"/>
            <exon e_start="28677" e_stop="28564"/>
            <exon e_start="28455" e_stop="28369"/>
            <exon e_start="27648" e_stop="27581"/>
            <exon e_start="27001" e_stop="26502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.723" e_score="0.998"/>
          <exon-intron don_prob="0.976" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="31936" e_stop="31212" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.723">
            <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30917" e_stop="30723" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30589" e_stop="30529" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.833">
            <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29912" e_stop="29799" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="29798" i_stop="28678" i_length="1121"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="28677" e_stop="28564" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.793" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28455" e_stop="28369" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27648" e_stop="27581" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.705" acc_prob="0.971">
            <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27001" e_stop="26502" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31936" stop="31372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31656" stop="31212"/>
              <exon start="30917" stop="30878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31656" stop="31223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30723"/>
              <exon start="30589" stop="30529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31524" stop="31212"/>
              <exon start="30917" stop="30836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31286" stop="31212"/>
              <exon start="30917" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29799"/>
              <exon start="28677" stop="28631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30916" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29799"/>
              <exon start="28677" stop="28631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30912" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29799"/>
              <exon start="28677" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28619" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28581" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28576" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26887" stop="26502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26855" stop="26502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGTAATGCAGACATGGGTTCTGACAGTACACAGAACAGAGCAGACACTTCTGCCTCTGTCAGACTTCTCACTTACTCAACTCCTTCTGGCCAGTATGAACTTTTATTGTCCCCTGTTGAGCCAACTTTATCTCCTGCGCAAGAAGCTCAGACTAGTTCCTCTGTTAGGGATACAGAGAATGCATCTAACCCTGTTGGTGATCCTATGGAGACTGATGCGCCGACTGAGGAGAGAAACAATCAGTTTTTTCCTTTCAGTGACCCTGCATACTGGGACTTACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG : TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA : TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG : TTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAG : GTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGCAGAGGATGAGGTTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAG : GAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG : GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG : GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAGAAAGAAAAAGAA</gDNA_template>
            <first_frame> Q  S  N  A  D  M  G  S  D  S  T  Q  N  R  A  D  T  S  A  S  V  R  L  L  T  Y  S  T  P  S  G  Q  Y  E  L  L  L  S  P  V  E  P  T  L  S  P  A  Q  E  A  Q  T  S  S  S  V  R  D  T  E  N  A  S  N  P  V  G  D  P  M  E  T  D  A  P  T  E  E  R  N  N  Q  F  F  P  F  S  D  P  A  Y  W  D  L  P  F  L  Q  G  W  L  I  G  Q  S  Q  A  G  R  Q  A  I  H  S  E  H  S  G  A  T  N  I  V  S  A  Y  G  E  V  E  H  R  P  A  V  P  S  I  I  S  N  G  N  H  P  R  S  G  R  S  G  S  R  H  R  S  S  R  S  R  V  I  P  V  A  G  S  G  D  S  A  V  P  I  N  I  A  H  N  E  S  D  S  Q  A  L  M  S  R  F  Q  S  E  I  A  T  S  L  T  A  A  A  S  S  E  L  P  C  T  V  K  L  R  V  W  P  Y  D  I  K  V  P  C  A  P  L  D  A  E  K  C  R  L  I  I  P  H  A  V  L  C  S :   E  M  G  A  H  F  S  P  C  G  R  F  L  A  A  C  V  A  C  I  S  H  G  M  E  A  D  P  G  F  H  G  Q  F  R  H  D  A  A  T  S  P  T  R  H  P  I  A  A  H  P  V  M  Y  E  L  R  I  Y  S  L  E  E  A  N :   F  G  R  V  L  A  S  R  L  I  R  A  A  H  C  L  T  S  I  Q  :  F  S  P  T  S  E  H  L  L  L  A  Y  G  R  R  H  G  S  L  L  K  S  I  V  I  D  G  D  T  T  L  P  V  Y  T  I  L  E  :  V  Y  R  V  S  D  M  E  L  V  R  V  L  P  S  A  E  D  E  V  N  V  A  C  F  H  P  L  V  G  G  G  L  V  Y  G  T  K  :  E  G  K  L  R  I  L  Q  F  D  K  S  N  G  L  D  S  T  V  S  C  S  P  D  E  D  M  L  E  :  V  P  T  Y  A  L  E  G  *  K  L  L  M  S  A  D  G  C  S  C  K  T  R :   L  *  R  K  Y  T  Y  Q  D  N  D  W  W  L  Q  S  *  V  C  C  *  W  F  A  V  *  L  V  E  C  V  P  L  V  A  K  R  G  F  L  L  P  V  V  Y  L  R  *  T  L  Q  T  D  *  S  F  S  C  Y  K  R  V  Q  K  S  L  C  L  R  W  L  Q  E  S  *  E  N  T  N  M  I  E  E  E  M  S  S  K  S  W  D  C  C  F  C  K  V  *  H  F  V  V  L  I  Y  G  F  K  C  T  S  E  I  E  I  D  *  L  V  F  F  Q  V  K  V  Q  E  E  K  K  E  N  F  Q  P  Q  T  C  K  C  L  Y  I  M  Y  S  T  F  C  T  F  *  W  F  L  F  C  R  L  M  V  K  E  R  K  R  </first_frame>
            <second_frame>  R  V  M  Q  T  W  V  L  T  V  H  R  T  E  Q  T  L  L  P  L  S  D  F  S  L  T  Q  L  L  L  A  S  M  N  F  Y  C  P  L  L  S  Q  L  Y  L  L  R  K  K  L  R  L  V  P  L  L  G  I  Q  R  M  H  L  T  L  L  V  I  L  W  R  L  M  R  R  L  R  R  E  T  I  S  F  F  L  S  V  T  L  H  T  G  T  Y  H  S  C  K  D  G  *  L  A  K  A  K  Q  A  D  K  R  F  I  L  S  I  V  V  P  Q  T  L  Y  Q  L  M  V  K  *  N  I  V  L  Q  F  R  P  S  F  Q  T  V  I  I  Q  G  L  E  D  L  V  P  G  T  V  L  H  A  L  E  *  Y  L  L  L  D  L  V  I  V  L  F  P  L  T  L  H  I  M  K  V  I  L  K  L  L  *  V  G  S  S  Q  R  *  L  L  P  *  L  Q  Q  L  L  L  N  Y  L  V  L  *  N  S  E  C  G  L  M  I  L  R  F  H  V  R  R  L  M  L  K  N  V  A  *  L  Y  H  M  L  C  S  V   : V  K  W  V  P  T  F  H  H  V  E  D  F  *  Q  L  V  L  L  V  L  V  M  A  W  K  L  I  L  V  S  M  D  N  F  V  T  M  L  Q  L  H  L  P  D  I  Q  L  Q  P  T  R  L  C  M  S  Y  V  Y  I  P  W  R  R  Q   : I  L  V  G  C  L  H  L  D  *  L  E  L  L  I  V  *  L  Q  F  S :   S  L  Q  L  L  S  I  F  Y  L  P  M  D  V  A  M  D  H  F  *  K  V  L  *  S  M  E  I  Q  L  Y  L  S  T  L  F  L  R :   S  I  E  F  R  I  W  N  L  *  E  F  F  P  V  Q  R  M  R  L  T  L  L  V  S  I  L  W  L  V  V  A  *  Y  M  E  L  R :   K  E  N  *  G  S  C  N  L  I  N  Q  M  V  W  T  L  Q  Y  P  V  P  L  M  K  T  C  S  R :   S  Q  H  M  L  *  K  A  R  N  Y  *  C  Q  Q  M  V  V  V  V  K  L   : G  C  N  E  N  T  H  I  R  T  M  T  G  G  F  K  V  E  C  V  A  D  G  L  L  Y  S  W  L  N  V  C  H  W  W  Q  R  E  D  F  Y  F  R  L  C  T  Y  V  R  H  Y  R  L  T  D  L  F  R  A  T  R  E  C  K  N  R  C  A  *  G  G  F  R  R  A  E  K  I  L  T  *  *  K  R  K  C  R  R  K  V  G  I  A  V  S  A  K  F  D  I  S  L  Y  *  Y  M  A  S  N  V  H  Q  K  L  K  *  T  S  W  F  S  F  K  *  R  F  K  K  K  K  K  K  I  S  S  H  K  H  A  S  V  Y  I  L  C  I  Q  H  F  V  L  F  N  G  F  C  F  V  D  *  W  *  K  K  E  K  E </second_frame>
            <third_frame>   E  *  C  R  H  G  F  *  Q  Y  T  E  Q  S  R  H  F  C  L  C  Q  T  S  H  L  L  N  S  F  W  P  V  *  T  F  I  V  P  C  *  A  N  F  I  S  C  A  R  S  S  D  *  F  L  C  *  G  Y  R  E  C  I  *  P  C  W  *  S  Y  G  D  *  C  A  D  *  G  E  K  Q  S  V  F  S  F  Q  *  P  C  I  L  G  L  T  I  L  A  R  M  V  D  W  P  K  P  S  R  P  T  S  D  S  F  *  A  *  W  C  H  K  H  C  I  S  L  W  *  S  R  T  S  S  C  S  S  V  H  H  F  K  R  *  S  S  K  V  W  K  I  W  F  P  A  P  F  F  T  L  *  S  N  T  C  C  W  I  W  *  *  C  C  S  H  *  H  C  T  *  *  K  *  F  S  S  S  Y  E  S  V  P  V  R  D  S  Y  F  P  D  C  S  S  F  F  *  I  T  L  Y  C  E  T  Q  S  V  A  L  *  Y  *  G  S  M  C  A  A  *  C  *  K  M  S  L  N  Y  T  T  C  C  A  L  *  :  *  N  G  C  P  L  F  T  M  W  K  I  F  S  S  L  C  C  L  Y  *  S  W  H  G  S  *  S  W  F  P  W  T  I  S  S  R  C  C  N  F  T  Y  Q  T  S  N  C  S  P  P  G  Y  V  *  A  T  Y  I  F  L  G  G  G  K  :  F  W  *  G  A  C  I  S  T  N  *  S  C  S  L  F  D  F  N  S   : V  L  S  N  F  *  A  S  F  T  C  L  W  T  S  P  W  I  T  S  E  K  Y  C  D  R  W  R  Y  N  S  T  C  L  H  Y  S  *   : G  L  *  S  F  G  Y  G  T  C  E  S  S  S  Q  C  R  G  *  G  *  R  C  L  F  P  S  F  G  W  W  W  P  S  I  W  N  *   : G  R  K  I  E  D  P  A  I  *  *  I  K  W  F  G  L  Y  S  I  L  F  P  *  *  R  H  A  R   : G  P  N  I  C  F  R  R  L  E  T  I  D  V  S  R  W  L  *  L  *  N  S  :  A  V  T  K  I  H  I  S  G  Q  *  L  V  A  S  K  L  S  V  L  L  M  V  C  C  I  V  G  *  M  C  A  T  G  G  K  E  R  I  F  T  S  G  C  V  L  T  L  D  I  T  D  *  L  I  F  F  V  L  Q  E  S  A  K  I  V  V  L  K  V  A  S  G  E  L  R  K  Y  *  H  D  R  R  G  N  V  V  E  K  L  G  L  L  F  L  Q  S  L  T  F  R  C  I  D  I  W  L  Q  M  Y  I  R  N  *  N  R  L  V  G  F  L  S  S  E  G  S  R  R  K  K  R  K  F  P  A  T  N  M  Q  V  F  I  Y  Y  V  F  N  I  L  Y  F  L  M  V  S  V  L  *  T  N  G  K  R  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31936" stop="31212"/>
                    <exon start="30917" stop="30723"/>
                    <exon start="30589" stop="30529"/>
                    <exon start="29912" stop="29799"/>
                    <exon start="28677" stop="28564"/>
                    <exon start="28455" stop="28369"/>
                    <exon start="27648" stop="27622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSNADMGSDSTQNRADTSASVRLLTYSTPSGQYELLLSPVEPTLSPAQEAQTSSSVRDTENASNPVGDPMETDAPTEERNNQFFPFSDPAYWDLPFLQGWLIGQSQAGRQAIHSEHSGATNIVSAYGEVEHRPAVPSIISNGNHPRSGRSGSRHRSSRSRVIPVAGSGDSAVPINIAHNESDSQALMSRFQSEIATSLTAAASSELPCTVKLRVWPYDIKVPCAPLDAEKCRLIIPHAVLCSEMGAHFSPCGRFLAACVACISHGMEADPGFHGQFRHDAATSPTRHPIAAHPVMYELRIYSLEEANFGRVLASRLIRAAHCLTSIQFSPTSEHLLLAYGRRHGSLLKSIVIDGDTTLPVYTILEVYRVSDMELVRVLPSAEDEVNVACFHPLVGGGLVYGTKEGKLRILQFDKSNGLDSTVSCSPDEDMLEVPTYALEG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27611" stop="27581"/>
                    <exon start="27001" stop="26796"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQQMVVVVKLGCNENTHIRTMTGGFKVECVADGLLYSWLNVCHWWQREDFYFRLCTYVRHYRLTDLFRATRECKNRCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31936" e_stop="31212"/>
            <exon e_start="30917" e_stop="30723"/>
            <exon e_start="30589" e_stop="30529"/>
            <exon e_start="29912" e_stop="29799"/>
            <exon e_start="28677" e_stop="28564"/>
            <exon e_start="28455" e_stop="28369"/>
            <exon e_start="27648" e_stop="27581"/>
            <exon e_start="27001" e_stop="26589"/>
            <exon e_start="26527" e_stop="26522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.723" e_score="0.998"/>
          <exon-intron don_prob="0.976" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.984" e_score="0.995"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="31936" e_stop="31212" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.723">
            <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30917" e_stop="30723" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30589" e_stop="30529" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.833">
            <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29912" e_stop="29799" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="29798" i_stop="28678" i_length="1121"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="28677" e_stop="28564" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.793" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28455" e_stop="28369" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27648" e_stop="27581" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.705" acc_prob="0.971">
            <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="27001" e_stop="26589" e_length="413"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.984">
            <gDNA_intron_boundary i_start="26588" i_stop="26528" i_length="61"/>
          </intron>
          <exon e_serial="9" e_score="0.500">
            <gDNA_exon_boundary e_start="26527" e_stop="26522" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31936" stop="31372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31656" stop="31212"/>
              <exon start="30917" stop="30878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31656" stop="31223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30723"/>
              <exon start="30589" stop="30529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31212"/>
              <exon start="30917" stop="30741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31524" stop="31212"/>
              <exon start="30917" stop="30836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31286" stop="31212"/>
              <exon start="30917" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29799"/>
              <exon start="28677" stop="28631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30916" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29799"/>
              <exon start="28677" stop="28631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30912" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29799"/>
              <exon start="28677" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28619" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28581" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28437" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26589"/>
              <exon start="26527" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28437" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26589"/>
              <exon start="26527" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28437" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26589"/>
              <exon start="26527" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28437" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26589"/>
              <exon start="26527" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26589"/>
              <exon start="26527" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGTAATGCAGACATGGGTTCTGACAGTACACAGAACAGAGCAGACACTTCTGCCTCTGTCAGACTTCTCACTTACTCAACTCCTTCTGGCCAGTATGAACTTTTATTGTCCCCTGTTGAGCCAACTTTATCTCCTGCGCAAGAAGCTCAGACTAGTTCCTCTGTTAGGGATACAGAGAATGCATCTAACCCTGTTGGTGATCCTATGGAGACTGATGCGCCGACTGAGGAGAGAAACAATCAGTTTTTTCCTTTCAGTGACCCTGCATACTGGGACTTACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG : TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA : TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG : TTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAG : GTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGCAGAGGATGAGGTTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAG : GAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG : GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG : GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACAT : ACTAAT</gDNA_template>
            <first_frame> Q  S  N  A  D  M  G  S  D  S  T  Q  N  R  A  D  T  S  A  S  V  R  L  L  T  Y  S  T  P  S  G  Q  Y  E  L  L  L  S  P  V  E  P  T  L  S  P  A  Q  E  A  Q  T  S  S  S  V  R  D  T  E  N  A  S  N  P  V  G  D  P  M  E  T  D  A  P  T  E  E  R  N  N  Q  F  F  P  F  S  D  P  A  Y  W  D  L  P  F  L  Q  G  W  L  I  G  Q  S  Q  A  G  R  Q  A  I  H  S  E  H  S  G  A  T  N  I  V  S  A  Y  G  E  V  E  H  R  P  A  V  P  S  I  I  S  N  G  N  H  P  R  S  G  R  S  G  S  R  H  R  S  S  R  S  R  V  I  P  V  A  G  S  G  D  S  A  V  P  I  N  I  A  H  N  E  S  D  S  Q  A  L  M  S  R  F  Q  S  E  I  A  T  S  L  T  A  A  A  S  S  E  L  P  C  T  V  K  L  R  V  W  P  Y  D  I  K  V  P  C  A  P  L  D  A  E  K  C  R  L  I  I  P  H  A  V  L  C  S :   E  M  G  A  H  F  S  P  C  G  R  F  L  A  A  C  V  A  C  I  S  H  G  M  E  A  D  P  G  F  H  G  Q  F  R  H  D  A  A  T  S  P  T  R  H  P  I  A  A  H  P  V  M  Y  E  L  R  I  Y  S  L  E  E  A  N :   F  G  R  V  L  A  S  R  L  I  R  A  A  H  C  L  T  S  I  Q  :  F  S  P  T  S  E  H  L  L  L  A  Y  G  R  R  H  G  S  L  L  K  S  I  V  I  D  G  D  T  T  L  P  V  Y  T  I  L  E  :  V  Y  R  V  S  D  M  E  L  V  R  V  L  P  S  A  E  D  E  V  N  V  A  C  F  H  P  L  V  G  G  G  L  V  Y  G  T  K  :  E  G  K  L  R  I  L  Q  F  D  K  S  N  G  L  D  S  T  V  S  C  S  P  D  E  D  M  L  E  :  V  P  T  Y  A  L  E  G  *  K  L  L  M  S  A  D  G  C  S  C  K  T  R :   L  *  R  K  Y  T  Y  Q  D  N  D  W  W  L  Q  S  *  V  C  C  *  W  F  A  V  *  L  V  E  C  V  P  L  V  A  K  R  G  F  L  L  P  V  V  Y  L  R  *  T  L  Q  T  D  *  S  F  S  C  Y  K  R  V  Q  K  S  L  C  L  R  W  L  Q  E  S  *  E  N  T  N  M  I  E  E  E  M  S  S  K  S  W  D  C  C  F  C  K  V  *  H  F  V  V  L  I  Y  G  F  K  C  T  S  E  I  E  I  D  *  L  V  F  F  Q  V  K  V  Q  E  E  K  K  E  N  F  Q  P  Q  T   : Y  *  </first_frame>
            <second_frame>  R  V  M  Q  T  W  V  L  T  V  H  R  T  E  Q  T  L  L  P  L  S  D  F  S  L  T  Q  L  L  L  A  S  M  N  F  Y  C  P  L  L  S  Q  L  Y  L  L  R  K  K  L  R  L  V  P  L  L  G  I  Q  R  M  H  L  T  L  L  V  I  L  W  R  L  M  R  R  L  R  R  E  T  I  S  F  F  L  S  V  T  L  H  T  G  T  Y  H  S  C  K  D  G  *  L  A  K  A  K  Q  A  D  K  R  F  I  L  S  I  V  V  P  Q  T  L  Y  Q  L  M  V  K  *  N  I  V  L  Q  F  R  P  S  F  Q  T  V  I  I  Q  G  L  E  D  L  V  P  G  T  V  L  H  A  L  E  *  Y  L  L  L  D  L  V  I  V  L  F  P  L  T  L  H  I  M  K  V  I  L  K  L  L  *  V  G  S  S  Q  R  *  L  L  P  *  L  Q  Q  L  L  L  N  Y  L  V  L  *  N  S  E  C  G  L  M  I  L  R  F  H  V  R  R  L  M  L  K  N  V  A  *  L  Y  H  M  L  C  S  V   : V  K  W  V  P  T  F  H  H  V  E  D  F  *  Q  L  V  L  L  V  L  V  M  A  W  K  L  I  L  V  S  M  D  N  F  V  T  M  L  Q  L  H  L  P  D  I  Q  L  Q  P  T  R  L  C  M  S  Y  V  Y  I  P  W  R  R  Q   : I  L  V  G  C  L  H  L  D  *  L  E  L  L  I  V  *  L  Q  F  S :   S  L  Q  L  L  S  I  F  Y  L  P  M  D  V  A  M  D  H  F  *  K  V  L  *  S  M  E  I  Q  L  Y  L  S  T  L  F  L  R :   S  I  E  F  R  I  W  N  L  *  E  F  F  P  V  Q  R  M  R  L  T  L  L  V  S  I  L  W  L  V  V  A  *  Y  M  E  L  R :   K  E  N  *  G  S  C  N  L  I  N  Q  M  V  W  T  L  Q  Y  P  V  P  L  M  K  T  C  S  R :   S  Q  H  M  L  *  K  A  R  N  Y  *  C  Q  Q  M  V  V  V  V  K  L   : G  C  N  E  N  T  H  I  R  T  M  T  G  G  F  K  V  E  C  V  A  D  G  L  L  Y  S  W  L  N  V  C  H  W  W  Q  R  E  D  F  Y  F  R  L  C  T  Y  V  R  H  Y  R  L  T  D  L  F  R  A  T  R  E  C  K  N  R  C  A  *  G  G  F  R  R  A  E  K  I  L  T  *  *  K  R  K  C  R  R  K  V  G  I  A  V  S  A  K  F  D  I  S  L  Y  *  Y  M  A  S  N  V  H  Q  K  L  K  *  T  S  W  F  S  F  K  *  R  F  K  K  K  K  K  K  I  S  S  H  K  H  :  T  N </second_frame>
            <third_frame>   E  *  C  R  H  G  F  *  Q  Y  T  E  Q  S  R  H  F  C  L  C  Q  T  S  H  L  L  N  S  F  W  P  V  *  T  F  I  V  P  C  *  A  N  F  I  S  C  A  R  S  S  D  *  F  L  C  *  G  Y  R  E  C  I  *  P  C  W  *  S  Y  G  D  *  C  A  D  *  G  E  K  Q  S  V  F  S  F  Q  *  P  C  I  L  G  L  T  I  L  A  R  M  V  D  W  P  K  P  S  R  P  T  S  D  S  F  *  A  *  W  C  H  K  H  C  I  S  L  W  *  S  R  T  S  S  C  S  S  V  H  H  F  K  R  *  S  S  K  V  W  K  I  W  F  P  A  P  F  F  T  L  *  S  N  T  C  C  W  I  W  *  *  C  C  S  H  *  H  C  T  *  *  K  *  F  S  S  S  Y  E  S  V  P  V  R  D  S  Y  F  P  D  C  S  S  F  F  *  I  T  L  Y  C  E  T  Q  S  V  A  L  *  Y  *  G  S  M  C  A  A  *  C  *  K  M  S  L  N  Y  T  T  C  C  A  L  *  :  *  N  G  C  P  L  F  T  M  W  K  I  F  S  S  L  C  C  L  Y  *  S  W  H  G  S  *  S  W  F  P  W  T  I  S  S  R  C  C  N  F  T  Y  Q  T  S  N  C  S  P  P  G  Y  V  *  A  T  Y  I  F  L  G  G  G  K  :  F  W  *  G  A  C  I  S  T  N  *  S  C  S  L  F  D  F  N  S   : V  L  S  N  F  *  A  S  F  T  C  L  W  T  S  P  W  I  T  S  E  K  Y  C  D  R  W  R  Y  N  S  T  C  L  H  Y  S  *   : G  L  *  S  F  G  Y  G  T  C  E  S  S  S  Q  C  R  G  *  G  *  R  C  L  F  P  S  F  G  W  W  W  P  S  I  W  N  *   : G  R  K  I  E  D  P  A  I  *  *  I  K  W  F  G  L  Y  S  I  L  F  P  *  *  R  H  A  R   : G  P  N  I  C  F  R  R  L  E  T  I  D  V  S  R  W  L  *  L  *  N  S  :  A  V  T  K  I  H  I  S  G  Q  *  L  V  A  S  K  L  S  V  L  L  M  V  C  C  I  V  G  *  M  C  A  T  G  G  K  E  R  I  F  T  S  G  C  V  L  T  L  D  I  T  D  *  L  I  F  F  V  L  Q  E  S  A  K  I  V  V  L  K  V  A  S  G  E  L  R  K  Y  *  H  D  R  R  G  N  V  V  E  K  L  G  L  L  F  L  Q  S  L  T  F  R  C  I  D  I  W  L  Q  M  Y  I  R  N  *  N  R  L  V  G  F  L  S  S  E  G  S  R  R  K  K  R  K  F  P  A  T  N  I :   L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31936" stop="31212"/>
                    <exon start="30917" stop="30723"/>
                    <exon start="30589" stop="30529"/>
                    <exon start="29912" stop="29799"/>
                    <exon start="28677" stop="28564"/>
                    <exon start="28455" stop="28369"/>
                    <exon start="27648" stop="27622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSNADMGSDSTQNRADTSASVRLLTYSTPSGQYELLLSPVEPTLSPAQEAQTSSSVRDTENASNPVGDPMETDAPTEERNNQFFPFSDPAYWDLPFLQGWLIGQSQAGRQAIHSEHSGATNIVSAYGEVEHRPAVPSIISNGNHPRSGRSGSRHRSSRSRVIPVAGSGDSAVPINIAHNESDSQALMSRFQSEIATSLTAAASSELPCTVKLRVWPYDIKVPCAPLDAEKCRLIIPHAVLCSEMGAHFSPCGRFLAACVACISHGMEADPGFHGQFRHDAATSPTRHPIAAHPVMYELRIYSLEEANFGRVLASRLIRAAHCLTSIQFSPTSEHLLLAYGRRHGSLLKSIVIDGDTTLPVYTILEVYRVSDMELVRVLPSAEDEVNVACFHPLVGGGLVYGTKEGKLRILQFDKSNGLDSTVSCSPDEDMLEVPTYALEG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27611" stop="27581"/>
                    <exon start="27001" stop="26796"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQQMVVVVKLGCNENTHIRTMTGGFKVECVADGLLYSWLNVCHWWQREDFYFRLCTYVRHYRLTDLFRATRECKNRCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="27052" e_stop="26502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27052" e_stop="26502" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27052" stop="26544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26887" stop="26502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26855" stop="26502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAGAAAGAAAAAGAA</gDNA_template>
            <first_frame> F  D  V  P  L  K  H  F  V  C  L  T  H  P  I  I  Q  A  V  T  K  I  H  I  S  G  Q  *  L  V  A  S  K  L  S  V  L  L  M  V  C  C  I  V  G  *  M  C  A  T  G  G  K  E  R  I  F  T  S  G  C  V  L  T  L  D  I  T  D  *  L  I  F  F  V  L  Q  E  S  A  K  I  V  V  L  K  V  A  S  G  E  L  R  K  Y  *  H  D  R  R  G  N  V  V  E  K  L  G  L  L  F  L  Q  S  L  T  F  R  C  I  D  I  W  L  Q  M  Y  I  R  N  *  N  R  L  V  G  F  L  S  S  E  G  S  R  R  K  K  R  K  F  P  A  T  N  M  Q  V  F  I  Y  Y  V  F  N  I  L  Y  F  L  M  V  S  V  L  *  T  N  G  K  R  K  K  K   </first_frame>
            <second_frame>  L  M  F  L  *  N  I  L  F  V  *  H  I  R  L  F  R  L  *  R  K  Y  T  Y  Q  D  N  D  W  W  L  Q  S  *  V  C  C  *  W  F  A  V  *  L  V  E  C  V  P  L  V  A  K  R  G  F  L  L  P  V  V  Y  L  R  *  T  L  Q  T  D  *  S  F  S  C  Y  K  R  V  Q  K  S  L  C  L  R  W  L  Q  E  S  *  E  N  T  N  M  I  E  E  E  M  S  S  K  S  W  D  C  C  F  C  K  V  *  H  F  V  V  L  I  Y  G  F  K  C  T  S  E  I  E  I  D  *  L  V  F  F  Q  V  K  V  Q  E  E  K  K  E  N  F  Q  P  Q  T  C  K  C  L  Y  I  M  Y  S  T  F  C  T  F  *  W  F  L  F  C  R  L  M  V  K  E  R  K  R  </second_frame>
            <third_frame>   *  C  S  S  E  T  F  C  L  S  N  T  S  D  Y  S  G  C  N  E  N  T  H  I  R  T  M  T  G  G  F  K  V  E  C  V  A  D  G  L  L  Y  S  W  L  N  V  C  H  W  W  Q  R  E  D  F  Y  F  R  L  C  T  Y  V  R  H  Y  R  L  T  D  L  F  R  A  T  R  E  C  K  N  R  C  A  *  G  G  F  R  R  A  E  K  I  L  T  *  *  K  R  K  C  R  R  K  V  G  I  A  V  S  A  K  F  D  I  S  L  Y  *  Y  M  A  S  N  V  H  Q  K  L  K  *  T  S  W  F  S  F  K  *  R  F  K  K  K  K  K  K  I  S  S  H  K  H  A  S  V  Y  I  L  C  I  Q  H  F  V  L  F  N  G  F  C  F  V  D  *  W  *  K  K  E  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27047" stop="26796"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSSETFCLSNTSDYSGCNENTHIRTMTGGFKVECVADGLLYSWLNVCHWWQREDFYFRLCTYVRHYRLTDLFRATRECKNRCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="35135" PGL_stop="32665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35135" e_stop="34754"/>
            <exon e_start="33945" e_stop="33784"/>
            <exon e_start="33686" e_stop="33570"/>
            <exon e_start="33268" e_stop="33179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35135" e_stop="34754" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33945" e_stop="33784" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.770" acc_prob="0.862">
            <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33686" e_stop="33570" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.952">
            <gDNA_intron_boundary i_start="33569" i_stop="33269" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="33268" e_stop="33179" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35135" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33570"/>
              <exon start="33268" stop="33179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35131" stop="34879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35115" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34999" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG : ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG : GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCA : TGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGGACATCGCAGGACTCCTTGGGTGGTAAG</gDNA_template>
            <first_frame> K  Y  L  P  S  S  S  S  F  F  S  F  S  P  K  F  F  F  L  P  I  L  P  F  Y  K  I  S  I  S  S  I  P  L  Y  F  P  V  *  I  P  P  N  L  R  A  F  S  D  N  F  I  D  F  L  I  F  R  R  K  S  S  I  G  N  D  G  K  Y  W  G  M  R  Y  S  F  V  G  I  E  L  *  G  D  L  F  G  R  R  I  Q  V  V  I  H  L  R  Q  I  R  F  M  Y  R  R  R  R  R  R  R  D  G  I  R  L  L  F  R  L  S  K  T  L  I  A  K  T   : D  V  V  M  S  F  S  Y  *  R  R  G  R  Y  L  L  E  L  N  V  V  L  R  S  Y  G  M  R  I  L  N  I  V  L  I  P  M  R  S  *  K  A  K  *  Q  E  T  R  D  G  V  L  Y  H   : G  *  R  Q  N  H  *  D  I  F  Q  L  S  I  V  H  C  C  L  R  L  G  L  Q  L  L  R  H  S  V  L  M  G  R  H  L  L  L  L   : M  E  I  T  Q  *  R  *  L  T  A  K  A  G  N  A  *  R  C  *  V  D  I  A  G  L  L  G  W  *  </first_frame>
            <second_frame>  N  T  F  R  R  L  L  H  F  S  H  F  P  L  N  F  F  F  F  P  F  C  P  S  T  R  S  L  Y  P  P  S  L  Y  I  S  R  C  K  F  H  Q  I  *  G  H  F  R  I  I  L  S  I  F  *  Y  F  A  G  K  V  P  L  E  M  T  G  N  I  G  A  *  G  I  R  L  W  G  *  N  Y  E  G  I  S  L  A  G  E  F  K  *  *  F  I  Y  V  K  S  D  S  C  T  A  A  A  A  A  A  G  M  E  F  A  C  S  S  D  *  A  K  P  *  L  Q  K  Q  :  M  W  *  C  L  S  A  T  N  E  E  G  G  I  S  S  S  *  T  *  F  *  E  V  M  G  *  E  F  *  I  L  C  S  F  L  *  E  V  K  K  P  S  S  K  R  P  E  T  G  S  Y  I  M  :  G  R  G  R  I  I  E  T  F  F  S  *  V  L  S  T  V  A  S  A  *  V  Y  N  C  C  G  I  Q  S  *  W  E  D  T  C  F  Y  S  :  W  R  S  H  S  K  D  N  *  L  P  K  R  E  M  L  E  G  V  K  W  T  S  Q  D  S  L  G  G  K </second_frame>
            <third_frame>   I  P  S  V  V  F  F  I  F  L  I  F  P  *  I  F  F  S  S  H  F  A  L  L  Q  D  L  Y  I  L  H  P  S  I  F  P  G  V  N  S  T  K  F  E  G  I  F  G  *  F  Y  R  F  F  N  I  S  P  E  K  F  H  W  K  *  R  E  I  L  G  H  E  V  F  V  C  G  D  R  I  M  R  G  S  L  W  P  E  N  S  S  S  D  S  S  T  S  N  P  I  H  V  P  P  P  P  P  P  P  G  W  N  S  P  A  L  P  I  E  Q  N  P  N  C  K  N  R :   C  G  N  V  F  Q  L  L  T  K  R  E  V  S  P  R  A  K  R  S  S  K  K  L  W  D  E  N  S  K  Y  C  A  H  S  Y  E  K  L  K  S  Q  V  A  R  D  P  R  R  G  L  I  S  W :   V  E  A  E  S  L  R  H  F  S  A  K  Y  C  P  L  L  P  P  P  R  S  T  I  A  A  A  F  S  P  D  G  K  T  L  A  S  T  H :   G  D  H  T  V  K  I  I  D  C  Q  S  G  K  C  L  K  V  L  S  G  H  R  R  T  P  W  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34938" stop="34754"/>
                    <exon start="33945" stop="33784"/>
                    <exon start="33686" stop="33570"/>
                    <exon start="33268" stop="33181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REILGHEVFVCGDRIMRGSLWPENSSSDSSTSNPIHVPPPPPPPGWNSPALPIEQNPNCKNRCGNVFQLLTKREVSPRAKRSSKKLWDENSKYCAHSYEKLKSQVARDPRRGLISWVEAESLRHFSAKYCPLLPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQSGKCLKVLSGHRRTPWVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35131" e_stop="34754"/>
            <exon e_start="33945" e_stop="33784"/>
            <exon e_start="33686" e_stop="33570"/>
            <exon e_start="33268" e_stop="33184"/>
            <exon e_start="32688" e_stop="32665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.715" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35131" e_stop="34754" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33945" e_stop="33784" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.770" acc_prob="0.862">
            <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33686" e_stop="33570" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.952">
            <gDNA_intron_boundary i_start="33569" i_stop="33269" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="33268" e_stop="33184" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.715" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33183" i_stop="32689" i_length="495"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32688" e_stop="32665" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35131" stop="34879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35115" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35102" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33570"/>
              <exon start="33268" stop="33184"/>
              <exon start="32688" stop="32665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34999" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34998" stop="34754"/>
              <exon start="33945" stop="33902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG : ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG : GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCA : TGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGGACATCGCAGGACTCCTTGGGTG : GTTCGTTTCCATCCACTCTACTCT</gDNA_template>
            <first_frame> T  F  R  R  L  L  H  F  S  H  F  P  L  N  F  F  F  F  P  F  C  P  S  T  R  S  L  Y  P  P  S  L  Y  I  S  R  C  K  F  H  Q  I  *  G  H  F  R  I  I  L  S  I  F  *  Y  F  A  G  K  V  P  L  E  M  T  G  N  I  G  A  *  G  I  R  L  W  G  *  N  Y  E  G  I  S  L  A  G  E  F  K  *  *  F  I  Y  V  K  S  D  S  C  T  A  A  A  A  A  A  G  M  E  F  A  C  S  S  D  *  A  K  P  *  L  Q  K  Q  :  M  W  *  C  L  S  A  T  N  E  E  G  G  I  S  S  S  *  T  *  F  *  E  V  M  G  *  E  F  *  I  L  C  S  F  L  *  E  V  K  K  P  S  S  K  R  P  E  T  G  S  Y  I  M  :  G  R  G  R  I  I  E  T  F  F  S  *  V  L  S  T  V  A  S  A  *  V  Y  N  C  C  G  I  Q  S  *  W  E  D  T  C  F  Y  S  :  W  R  S  H  S  K  D  N  *  L  P  K  R  E  M  L  E  G  V  K  W  T  S  Q  D  S  L  G   : G  S  F  P  S  T  L  L  </first_frame>
            <second_frame>  P  S  V  V  F  F  I  F  L  I  F  P  *  I  F  F  S  S  H  F  A  L  L  Q  D  L  Y  I  L  H  P  S  I  F  P  G  V  N  S  T  K  F  E  G  I  F  G  *  F  Y  R  F  F  N  I  S  P  E  K  F  H  W  K  *  R  E  I  L  G  H  E  V  F  V  C  G  D  R  I  M  R  G  S  L  W  P  E  N  S  S  S  D  S  S  T  S  N  P  I  H  V  P  P  P  P  P  P  P  G  W  N  S  P  A  L  P  I  E  Q  N  P  N  C  K  N  R :   C  G  N  V  F  Q  L  L  T  K  R  E  V  S  P  R  A  K  R  S  S  K  K  L  W  D  E  N  S  K  Y  C  A  H  S  Y  E  K  L  K  S  Q  V  A  R  D  P  R  R  G  L  I  S  W :   V  E  A  E  S  L  R  H  F  S  A  K  Y  C  P  L  L  P  P  P  R  S  T  I  A  A  A  F  S  P  D  G  K  T  L  A  S  T  H :   G  D  H  T  V  K  I  I  D  C  Q  S  G  K  C  L  K  V  L  S  G  H  R  R  T  P  W  V  :  V  R  F  H  P  L  Y  S </second_frame>
            <third_frame>   L  P  S  S  S  S  F  F  S  F  S  P  K  F  F  F  L  P  I  L  P  F  Y  K  I  S  I  S  S  I  P  L  Y  F  P  V  *  I  P  P  N  L  R  A  F  S  D  N  F  I  D  F  L  I  F  R  R  K  S  S  I  G  N  D  G  K  Y  W  G  M  R  Y  S  F  V  G  I  E  L  *  G  D  L  F  G  R  R  I  Q  V  V  I  H  L  R  Q  I  R  F  M  Y  R  R  R  R  R  R  R  D  G  I  R  L  L  F  R  L  S  K  T  L  I  A  K  T   : D  V  V  M  S  F  S  Y  *  R  R  G  R  Y  L  L  E  L  N  V  V  L  R  S  Y  G  M  R  I  L  N  I  V  L  I  P  M  R  S  *  K  A  K  *  Q  E  T  R  D  G  V  L  Y  H   : G  *  R  Q  N  H  *  D  I  F  Q  L  S  I  V  H  C  C  L  R  L  G  L  Q  L  L  R  H  S  V  L  M  G  R  H  L  L  L  L   : M  E  I  T  Q  *  R  *  L  T  A  K  A  G  N  A  *  R  C  *  V  D  I  A  G  L  L  G  W :   F  V  S  I  H  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34938" stop="34754"/>
                    <exon start="33945" stop="33784"/>
                    <exon start="33686" stop="33570"/>
                    <exon start="33268" stop="33184"/>
                    <exon start="32688" stop="32665"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REILGHEVFVCGDRIMRGSLWPENSSSDSSTSNPIHVPPPPPPPGWNSPALPIEQNPNCKNRCGNVFQLLTKREVSPRAKRSSKKLWDENSKYCAHSYEKLKSQVARDPRRGLISWVEAESLRHFSAKYCPLLPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQSGKCLKVLSGHRRTPWVVRFHPLYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="39939" PGL_stop="39618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39939" e_stop="39618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="39939" e_stop="39618" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39939" stop="39618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39939" stop="39649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATCTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTGGAGATAACTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATGTACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  I  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  I  T  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  S  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  C  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  S  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  I  S  V  V  *  S  W  R  *  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  V  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  L  F  L  A  L  Y  K  N  R  N  T  I  Y  T  F  L  L  Y  K  A  G  D  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  M  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="41520" PGL_stop="44376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41520" e_stop="42261"/>
            <exon e_start="42875" e_stop="43085"/>
            <exon e_start="43165" e_stop="43275"/>
            <exon e_start="43375" e_stop="44376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.998"/>
          <exon-intron don_prob="0.967" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41520" e_stop="42261" e_length="742"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42875" e_stop="43085" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.799">
            <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43165" e_stop="43275" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="43375" e_stop="44376" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41520" stop="42031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41520" stop="41968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41574" stop="42123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41629" stop="42204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41907" stop="42261"/>
              <exon start="42875" stop="43027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41992" stop="42158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42118" stop="42261"/>
              <exon start="42875" stop="43067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42145" stop="42261"/>
              <exon start="42875" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42168" stop="42261"/>
              <exon start="42875" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42177" stop="42261"/>
              <exon start="42875" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42190" stop="42261"/>
              <exon start="42875" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42190" stop="42261"/>
              <exon start="42875" stop="43082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="43085"/>
              <exon start="43165" stop="43243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43021" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="44037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43221" stop="43275"/>
              <exon start="43375" stop="44000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43387" stop="44105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43436" stop="44368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43485" stop="44204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43609" stop="44366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43679" stop="44345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43721" stop="44375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43732" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43749" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43790" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43960" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44053" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC : GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG : GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> H  N  F  N  S  S  F  S  I  F  L  H  Q  F  G  E  Q  N  K  K  K  N  *  K  K  F  I  I  F  N  L  Q  K  K  K  L  V  I  I  L  L  L  L  W  Q  *  V  C  H  T  R  S  V  P  Y  Q  E  H  R  S  R  R  K  P  V  E  F  H  A  K  F  R  R  R  G  V  Q  L  H  Q  L  C  G  E  H  R  *  R  I  *  K  Y  R  C  K  K  Q  E  M  K  L  T  G  C  R  R  R  R  R  R  R  *  V  R  *  W  E  E  E  C  D  R  I  Y  R  *  R  V  K  R  *  W  R  L  R  *  R  R  *  L  R  E  N  I  R  L  G  I  R  R  R  K  R  K  V  F  R  C  L  L  *  C  R  W  I  V  *  K  R  I  I  L  *  I  E  K  R  R  *  M  R  V  Y  R  R  *  K  A  P  V  W  K  G  L  *  W  M  C  G  G  D  W  W  R  E  M  H  R  E  S  I  I  G  A  V  M  L  S  L  W  K  W  R  K  N  M  D  S  K  F  K  L  *  C  L  S  I  N  A  V  V  T  S  V  I  P  A   : R  S  L  F  R  G  G  L  L  R  R  W  R  R  I  Q  I  L  H  T  Q  I  S  G  E  G  G  I  L  N  M  Y  R  L  V  A  I  H  F  Q  F  L  K  E  G  L  L  F  N  A  I  L  I  S  *  E  G  L  E  I  D  L  R  I  S  *  V  I  P  L  W :   K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  T  I  S  T  P  P  S  P  F  F  S  I  N  L  V  N  K  T  K  K  K  I  K  K  N  S  S  F  L  I  C  K  K  K  N  *  L  *  Y  Y  Y  Y  Y  G  N  E  S  A  T  P  D  R  C  L  I  R  N  I  A  H  G  G  N  R  W  S  F  M  R  S  S  G  E  G  E  F  S  Y  I  S  Y  V  E  N  T  D  D  E  F  K  S  I  G  A  K  N  R  K  *  N  *  Q  G  V  A  V  A  V  A  A  D  E  S  D  D  G  R  R  N  A  T  G  F  I  G  S  V  S  S  V  D  G  G  S  G  R  G  G  S  *  E  R  I  *  G  *  E  F  V  G  E  R  E  R  C  S  G  V  C  Y  D  A  V  G  *  C  E  N  G  S  Y  C  E  *  K  K  G  D  E  C  E  F  T  G  V  E  K  R  R  C  G  R  D  Y  D  G  C  V  V  G  I  G  G  E  R  C  T  G  R  V  *  L  G  R  L  C  *  A  Y  G  N  G  E  K  T  W  T  Q  S  S  S  C  D  V  F  P  S  M  R  W  *  R  R  *  F  L  H  :  D  P  S  S  E  V  G  C  *  G  D  G  E  G  S  R  S  C  I  H  R  S  V  G  K  E  E  F  *  I  C  I  A  W  L  R  Y  T  S  S  S  *  R  K  D  S  C  S  M  L  F  *  F  H  E  R  V  *  R  *  I  *  E  S  L  R  *  Y  H  C   : G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   Q  F  Q  L  L  L  L  H  F  S  P  S  I  W  *  T  K  Q  K  K  K  L  K  K  I  H  H  F  *  S  A  K  K  K  I  S  Y  N  I  I  I  I  M  A  M  S  L  P  H  Q  I  G  A  L  S  G  T  S  L  T  A  E  T  G  G  V  S  C  E  V  P  A  K  G  S  S  A  T  S  A  M  W  R  T  P  M  T  N  L  K  V  S  V  Q  K  T  G  N  E  I  D  R  V  S  P  S  P  S  P  P  M  S  P  M  M  G  G  G  M  R  P  D  L  S  V  A  C  Q  A  L  M  E  A  Q  V  E  E  V  V  E  R  E  Y  K  V  R  N  S  S  E  K  E  K  G  V  P  V  F  V  M  M  P  L  D  S  V  K  T  D  H  T  V  N  R  K  K  A  M  N  A  S  L  Q  A  L  K  S  A  G  V  E  G  I  M  M  D  V  W  W  G  L  V  E  R  D  A  P  G  E  Y  N  W  G  G  Y  A  E  L  M  E  M  A  K  K  H  G  L  K  V  Q  A  V  M  S  F  H  Q  C  G  G  N  V  G  D  S  C  T :   I  P  L  P  R  W  V  V  E  E  M  E  K  D  P  D  L  A  Y  T  D  Q  W  G  R  R  N  F  E  Y  V  S  L  G  C  D  T  L  P  V  L  K  G  R  T  P  V  Q  C  Y  S  D  F  M  R  G  F  R  D  R  F  E  N  L  L  G  D  T  I  V  :  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41609" stop="42261"/>
                    <exon start="42875" stop="43085"/>
                    <exon start="43165" stop="43275"/>
                    <exon start="43375" stop="44181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1779</number_coding_nucleotides>
                  <number_encoded_amino_acids>593</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKKISYNIIIIMAMSLPHQIGALSGTSLTAETGGVSCEVPAKGSSATSAMWRTPMTNLKVSVQKTGNEIDRVSPSPSPPMSPMMGGGMRPDLSVACQALMEAQVEEVVEREYKVRNSSEKEKGVPVFVMMPLDSVKTDHTVNRKKAMNASLQALKSAGVEGIMMDVWWGLVERDAPGEYNWGGYAELMEMAKKHGLKVQAVMSFHQCGGNVGDSCTIPLPRWVVEEMEKDPDLAYTDQWGRRNFEYVSLGCDTLPVLKGRTPVQCYSDFMRGFRDRFENLLGDTIVEIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42724" e_stop="43085"/>
            <exon e_start="43165" e_stop="43275"/>
            <exon e_start="43375" e_stop="44376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42724" e_stop="43085" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.799">
            <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43165" e_stop="43275" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="43375" e_stop="44376" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42724" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="43085"/>
              <exon start="43165" stop="43243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="43689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43021" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="44037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43221" stop="43275"/>
              <exon start="43375" stop="44000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43387" stop="44105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43436" stop="44368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43485" stop="44204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43609" stop="44366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43679" stop="44345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43721" stop="44375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43732" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43749" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43790" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43960" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44053" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG : GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> E  S  T  *  I  A  *  N  G  I  W  K  I  H  E  *  F  N  Y  L  C  L  I  F  I  R  V  L  L  C  V  L  I  S  T  N  R  D  V  *  A  L  L  K  *  I  F  E  I  S  G  S  L  F  R  G  G  L  L  R  R  W  R  R  I  Q  I  L  H  T  Q  I  S  G  E  G  G  I  L  N  M  Y  R  L  V  A  I  H  F  Q  F  L  K  E  G  L  L  F  N  A  I  L  I  S  *  E  G  L  E  I  D  L  R  I  S  *  V  I  P  L  W :   K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  N  Q  P  E  *  H  K  M  E  Y  G  R  F  M  N  N  S  I  I  F  V  *  F  S  F  E  F  C  Y  A  F  *  F  L  L  I  A  M  Y  R  R  C  L  S  R  F  L  K  F  Q  D  P  S  S  E  V  G  C  *  G  D  G  E  G  S  R  S  C  I  H  R  S  V  G  K  E  E  F  *  I  C  I  A  W  L  R  Y  T  S  S  S  *  R  K  D  S  C  S  M  L  F  *  F  H  E  R  V  *  R  *  I  *  E  S  L  R  *  Y  H  C   : G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   I  N  L  N  S  I  K  W  N  M  E  D  S  *  I  I  Q  L  S  L  F  N  F  H  S  S  S  V  M  R  F  D  F  Y  *  S  R  C  I  G  V  A  *  V  D  F  *  N  F  R  I  P  L  P  R  W  V  V  E  E  M  E  K  D  P  D  L  A  Y  T  D  Q  W  G  R  R  N  F  E  Y  V  S  L  G  C  D  T  L  P  V  L  K  G  R  T  P  V  Q  C  Y  S  D  F  M  R  G  F  R  D  R  F  E  N  L  L  G  D  T  I  V  :  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42867" stop="43085"/>
                    <exon start="43165" stop="43275"/>
                    <exon start="43375" stop="44181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRIPLPRWVVEEMEKDPDLAYTDQWGRRNFEYVSLGCDTLPVLKGRTPVQCYSDFMRGFRDRFENLLGDTIVEIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43151" e_stop="44376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="43151" e_stop="44376" e_length="1226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43151" stop="43707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43365" stop="43828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43387" stop="44105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43436" stop="44368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43485" stop="44204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43609" stop="44366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43679" stop="44345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43721" stop="44375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43732" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43749" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43790" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43960" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44053" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> D  V  *  Y  R  K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  R  Y  K  A  S  S  V  F  Y  G  V  F  *  C  L  T  S  S  L  L  L  M  I  C  S  V  K  C  I  V  S  R  C  S  T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  T  C  D  I  G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *  G  I  K  Q  V  L  F  S  M  V  C  F  S  V  *  R  R  H  Y  Y  *  *  F  V  L  L  N  V  L  Y  R  V  A  V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   R  V  I  *  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  V  *  S  K  F  C  F  L  W  C  V  L  V  F  N  V  V  I  I  T  D  D  L  F  C  *  M  Y  C  I  A  L  Q  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43354" stop="44181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYCIALQYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43151" e_stop="43275"/>
            <exon e_start="43375" e_stop="44376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43151" e_stop="43275" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="43375" e_stop="44376" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43151" stop="43275"/>
              <exon start="43375" stop="44096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43221" stop="43275"/>
              <exon start="43375" stop="44000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43387" stop="44105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43436" stop="44368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43485" stop="44204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43609" stop="44366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43679" stop="44345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43721" stop="44375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43722" stop="44275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43732" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43749" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43790" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43960" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44053" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> D  V  *  Y  R  K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  T  C  D  I  G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   R  V  I  *  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43165" stop="43275"/>
                    <exon start="43375" stop="44181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="41520" e_stop="42138"/>
            <exon e_start="43751" e_stop="44376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41520" e_stop="42138" e_length="619"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42139" i_stop="43750" i_length="1612"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="43751" e_stop="44376" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41520" stop="42031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41520" stop="41968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41574" stop="42123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41860" stop="42138"/>
              <exon start="43751" stop="43966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43790" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43960" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44053" stop="44376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGC : GCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> H  N  F  N  S  S  F  S  I  F  L  H  Q  F  G  E  Q  N  K  K  K  N  *  K  K  F  I  I  F  N  L  Q  K  K  K  L  V  I  I  L  L  L  L  W  Q  *  V  C  H  T  R  S  V  P  Y  Q  E  H  R  S  R  R  K  P  V  E  F  H  A  K  F  R  R  R  G  V  Q  L  H  Q  L  C  G  E  H  R  *  R  I  *  K  Y  R  C  K  K  Q  E  M  K  L  T  G  C  R  R  R  R  R  R  R  *  V  R  *  W  E  E  E  C  D  R  I  Y  R  *  R  V  K  R  *  W  R  L  R  *  R  R  *  L  R  E  N  I  R  L  G  I  R  R  R  K  R  K  V  F  R  C  L  L  *  C  R  W  I  V  *  K  R  I  I  L  *  I  E  K  R  R  *  M  R  V  Y  R  R  *  K  A  P  V  W  K  G  L  *  W  M  C  G  G  D  W  W  R  E  M   : R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </first_frame>
            <second_frame>  T  I  S  T  P  P  S  P  F  F  S  I  N  L  V  N  K  T  K  K  K  I  K  K  N  S  S  F  L  I  C  K  K  K  N  *  L  *  Y  Y  Y  Y  Y  G  N  E  S  A  T  P  D  R  C  L  I  R  N  I  A  H  G  G  N  R  W  S  F  M  R  S  S  G  E  G  E  F  S  Y  I  S  Y  V  E  N  T  D  D  E  F  K  S  I  G  A  K  N  R  K  *  N  *  Q  G  V  A  V  A  V  A  A  D  E  S  D  D  G  R  R  N  A  T  G  F  I  G  S  V  S  S  V  D  G  G  S  G  R  G  G  S  *  E  R  I  *  G  *  E  F  V  G  E  R  E  R  C  S  G  V  C  Y  D  A  V  G  *  C  E  N  G  S  Y  C  E  *  K  K  G  D  E  C  E  F  T  G  V  E  K  R  R  C  G  R  D  Y  D  G  C  V  V  G  I  G  G  E  R  C  :  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </second_frame>
            <third_frame>   Q  F  Q  L  L  L  L  H  F  S  P  S  I  W  *  T  K  Q  K  K  K  L  K  K  I  H  H  F  *  S  A  K  K  K  I  S  Y  N  I  I  I  I  M  A  M  S  L  P  H  Q  I  G  A  L  S  G  T  S  L  T  A  E  T  G  G  V  S  C  E  V  P  A  K  G  S  S  A  T  S  A  M  W  R  T  P  M  T  N  L  K  V  S  V  Q  K  T  G  N  E  I  D  R  V  S  P  S  P  S  P  P  M  S  P  M  M  G  G  G  M  R  P  D  L  S  V  A  C  Q  A  L  M  E  A  Q  V  E  E  V  V  E  R  E  Y  K  V  R  N  S  S  E  K  E  K  G  V  P  V  F  V  M  M  P  L  D  S  V  K  T  D  H  T  V  N  R  K  K  A  M  N  A  S  L  Q  A  L  K  S  A  G  V  E  G  I  M  M  D  V  W  W  G  L  V  E  R  D  A :   P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41609" stop="42138"/>
                    <exon start="43751" stop="43784"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKKISYNIIIIMAMSLPHQIGALSGTSLTAETGGVSCEVPAKGSSATSAMWRTPMTNLKVSVQKTGNEIDRVSPSPSPPMSPMMGGGMRPDLSVACQALMEAQVEEVVEREYKVRNSSEKEKGVPVFVMMPLDSVKTDHTVNRKKAMNASLQALKSAGVEGIMMDVWWGLVERDAPRCSFQLHMC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="44380" PGL_stop="41662"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44380" e_stop="43681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="44380" e_stop="43681" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44380" stop="43736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44376" stop="43830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44358" stop="43681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44353" stop="43881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGAGTGTTGTAGTATCCAGCAGTCAACTC</gDNA_template>
            <first_frame> E  E  V  Y  L  L  L  N  Y  V  S  F  H  *  D  I  M  S  R  L  *  K  N  Y  T  M  N  S  F  T  N  I  *  E  Q  R  *  R  A  I  R  S  R  *  H  V  E  K  L  H  V  S  *  K  D  Q  I  K  T  V  L  F  D  N  D  L  L  S  A  L  G  L  L  Q  L  L  V  L  T  A  E  L  Y  E  R  N  A  L  L  P  S  L  P  V  R  G  I  C  *  R  L  F  L  L  S  F  S  S  Q  R  Q  R  I  V  S  S  Y  Q  D  G  I  S  Q  D  S  S  S  S  M  *  T  R  S  S  L  Y  H  L  I  D  R  *  C  S  T  R  T  L  E  G  S  V  H  E  H  N  H  R  I  V  A  M  H  S  P  Q  Q  V  E  L  E  L  P  E  L  L  T  P  P  A  *  P  T  S  Q  V  H  I  V  H  L  V  A  A  R  G  H  A  F  Q  H  M  *  S  *  K  L  H  R  G  G  Q  A  F  G  R  W  E  G  N  H  L  G  Y  E  C  C  S  I  Q  Q  S  T  </first_frame>
            <second_frame>  K  R  C  I  Y  Y  *  I  M  Y  H  F  I  K  T  *  C  L  D  F  K  K  T  T  R  *  T  V  L  Q  T  F  K  N  N  D  N  E  L  *  D  P  G  N  M  L  K  N  F  M  L  A  K  R  I  K  L  K  Q  Y  Y  L  T  T  I  C  L  V  H  *  G  Y  C  S  F  L  Y  *  R  L  S  Y  M  N  E  M  L  C  F  P  L  Y  L  F  A  A  F  V  S  V  F  S  F  F  H  F  L  H  K  G  N  E  S  S  P  V  I  R  M  E  *  V  R  I  H  P  Q  V  C  K  R  A  H  L  S  I  T  *  L  I  V  D  A  Q  R  G  R  L  K  D  L  F  M  S  I  I  I  V  S  W  Q  C  I  L  P  S  K  W  N  L  S  F  L  S  C  *  R  H  L  P  N  Q  L  L  R  C  T  L  C  I  L  W  L  L  V  V  T  H  F  N  T  C  E  V  E  N  C  T  V  A  G  K  H  L  G  D  G  K  V  T  I  S  V  T  S  V  V  V  S  S  S  Q  L </second_frame>
            <third_frame>   R  G  V  F  T  T  E  L  C  I  I  S  L  R  H  N  V  *  T  L  K  K  L  H  D  E  Q  F  Y  K  H  L  R  T  T  I  T  S  Y  K  I  Q  V  T  C  *  K  T  S  C  *  L  K  G  S  N  *  N  S  T  I  *  Q  R  F  A  *  C  I  R  A  T  A  A  S  C  T  N  G  *  V  I  *  T  K  C  S  A  S  L  S  T  C  S  R  H  L  L  A  S  F  P  S  F  I  F  F  T  K  A  T  N  R  L  Q  L  S  G  W  N  K  S  G  F  I  L  K  Y  V  N  A  L  I  S  L  S  P  D  *  S  L  M  L  N  E  D  A  *  R  I  C  S  *  A  *  S  S  Y  R  G  N  A  F  S  P  A  S  G  T  *  A  S  *  V  A  N  A  T  C  L  T  N  F  S  G  A  H  C  A  S  C  G  C  S  W  S  R  I  S  T  H  V  K  L  K  T  A  P  W  R  A  S  I  W  A  M  G  R  *  P  S  R  L  R  V  L  *  Y  P  A  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44376" e_stop="43776"/>
            <exon e_start="42068" e_stop="41662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="44376" e_stop="43776" e_length="601"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43775" i_stop="42069" i_length="1707"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42068" e_stop="41662" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44376" stop="43830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44353" stop="43881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43853" stop="43776"/>
              <exon start="42068" stop="41662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726026" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACAT : GTAAACTCGCATTCATCGCCTTTTTTCTATTCACAGTATGATCCGTTTTCACACTATCCAACGGCATCATAACAAACACCGGAACACCTTTCTCTTTCTCCGACGAATTCCTAACCTTATATTCTCTCTCAACTACCTCCTCTACCTGAGCCTCCATCAACGCTTGACACGCTACCGATAAATCCGGTCGCATTCCTCCTCCCATCATCGGACTCATCGGCGGCGACGGCGACGGCGACACCCTGTCAATTTCATTTCCTGTTTTTTGCACCGATACTTTTAAATTCGTCATCGGTGTTCTCCACATAGCTGATGTAGCTGAACTCCCCTTCGCCGGAACTTCGCATGAAACTCCACCGGTTTCCGCCGTGAGCGATGTTCCTGATAAGGCACCGATCTGGTGTGGC</gDNA_template>
            <first_frame> R  C  I  Y  Y  *  I  M  Y  H  F  I  K  T  *  C  L  D  F  K  K  T  T  R  *  T  V  L  Q  T  F  K  N  N  D  N  E  L  *  D  P  G  N  M  L  K  N  F  M  L  A  K  R  I  K  L  K  Q  Y  Y  L  T  T  I  C  L  V  H  *  G  Y  C  S  F  L  Y  *  R  L  S  Y  M  N  E  M  L  C  F  P  L  Y  L  F  A  A  F  V  S  V  F  S  F  F  H  F  L  H  K  G  N  E  S  S  P  V  I  R  M  E  *  V  R  I  H  P  Q  V  C  K  R  A  H  L  S  I  T  *  L  I  V  D  A  Q  R  G  R  L  K  D  L  F  M  S  I  I  I  V  S  W  Q  C  I  L  P  S  K  W  N  L  S  F  L  S  C  *  R  H  L  P  N  Q  L  L  R  C  T  L  C  I  L  W  L  L  V  V  T  H  F  N  T   : C  K  L  A  F  I  A  F  F  L  F  T  V  *  S  V  F  T  L  S  N  G  I  I  T  N  T  G  T  P  F  S  F  S  D  E  F  L  T  L  Y  S  L  S  T  T  S  S  T  *  A  S  I  N  A  *  H  A  T  D  K  S  G  R  I  P  P  P  I  I  G  L  I  G  G  D  G  D  G  D  T  L  S  I  S  F  P  V  F  C  T  D  T  F  K  F  V  I  G  V  L  H  I  A  D  V  A  E  L  P  F  A  G  T  S  H  E  T  P  P  V  S  A  V  S  D  V  P  D  K  A  P  I  W  C  G </first_frame>
            <second_frame>  G  V  F  T  T  E  L  C  I  I  S  L  R  H  N  V  *  T  L  K  K  L  H  D  E  Q  F  Y  K  H  L  R  T  T  I  T  S  Y  K  I  Q  V  T  C  *  K  T  S  C  *  L  K  G  S  N  *  N  S  T  I  *  Q  R  F  A  *  C  I  R  A  T  A  A  S  C  T  N  G  *  V  I  *  T  K  C  S  A  S  L  S  T  C  S  R  H  L  L  A  S  F  P  S  F  I  F  F  T  K  A  T  N  R  L  Q  L  S  G  W  N  K  S  G  F  I  L  K  Y  V  N  A  L  I  S  L  S  P  D  *  S  L  M  L  N  E  D  A  *  R  I  C  S  *  A  *  S  S  Y  R  G  N  A  F  S  P  A  S  G  T  *  A  S  *  V  A  N  A  T  C  L  T  N  F  S  G  A  H  C  A  S  C  G  C  S  W  S  R  I  S  T  H  :  V  N  S  H  S  S  P  F  F  Y  S  Q  Y  D  P  F  S  H  Y  P  T  A  S  *  Q  T  P  E  H  L  S  L  S  P  T  N  S  *  P  Y  I  L  S  Q  L  P  P  L  P  E  P  P  S  T  L  D  T  L  P  I  N  P  V  A  F  L  L  P  S  S  D  S  S  A  A  T  A  T  A  T  P  C  Q  F  H  F  L  F  F  A  P  I  L  L  N  S  S  S  V  F  S  T  *  L  M  *  L  N  S  P  S  P  E  L  R  M  K  L  H  R  F  P  P  *  A  M  F  L  I  R  H  R  S  G  V   </second_frame>
            <third_frame>   V  Y  L  L  L  N  Y  V  S  F  H  *  D  I  M  S  R  L  *  K  N  Y  T  M  N  S  F  T  N  I  *  E  Q  R  *  R  A  I  R  S  R  *  H  V  E  K  L  H  V  S  *  K  D  Q  I  K  T  V  L  F  D  N  D  L  L  S  A  L  G  L  L  Q  L  L  V  L  T  A  E  L  Y  E  R  N  A  L  L  P  S  L  P  V  R  G  I  C  *  R  L  F  L  L  S  F  S  S  Q  R  Q  R  I  V  S  S  Y  Q  D  G  I  S  Q  D  S  S  S  S  M  *  T  R  S  S  L  Y  H  L  I  D  R  *  C  S  T  R  T  L  E  G  S  V  H  E  H  N  H  R  I  V  A  M  H  S  P  Q  Q  V  E  L  E  L  P  E  L  L  T  P  P  A  *  P  T  S  Q  V  H  I  V  H  L  V  A  A  R  G  H  A  F  Q  H  M :   *  T  R  I  H  R  L  F  S  I  H  S  M  I  R  F  H  T  I  Q  R  H  H  N  K  H  R  N  T  F  L  F  L  R  R  I  P  N  L  I  F  S  L  N  Y  L  L  Y  L  S  L  H  Q  R  L  T  R  Y  R  *  I  R  S  H  S  S  S  H  H  R  T  H  R  R  R  R  R  R  R  H  P  V  N  F  I  S  C  F  L  H  R  Y  F  *  I  R  H  R  C  S  P  H  S  *  C  S  *  T  P  L  R  R  N  F  A  *  N  S  T  G  F  R  R  E  R  C  S  *  *  G  T  D  L  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41901" stop="41662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HATDKSGRIPPPIIGLIGGDGDGDTLSISFPVFCTDTFKFVIGVLHIADVAELPFAGTSHETPPVSAVSDVPDKAPIWCG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41954" stop="41760"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYILSQLPPLPEPPSTLDTLPINPVAFLLPSSDSSAATATATPCQFHFLFFAPILLNSSSVFST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="46728" PGL_stop="47164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46728" e_stop="47164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="46728" e_stop="47164" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46728" stop="47164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46737" stop="47164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</gDNA_template>
            <first_frame> A  S  D  P  Y  G  S  R  C  S  *  W  S  E  E  H  T  W  N  W  I  R  Q  K  V  K  K  R  K  *  N  *  L  I  N  *  L  I  N  *  H  I  Y  Q  F  I  Y  L  N  F  N  *  F  F  I  *  F  Y  D  F  H  I  C  F  R  L  L  S  I  S  E  K  T  *  Y  Y  *  F  V  R  S  L  T  K  R  I  T  K  F  N  S  Y  K  V  R  *  F  S  *  V  W  F  N  Y  C  L  T  I  P  C  T  L  Y  W  C  Y  S  E  F  C  F  I  D  R  D  F  S  R  *  K  F  S  L  *  V  R  N  K  K  V  L  F  C  F  C   </first_frame>
            <second_frame>  Q  V  I  H  M  A  Q  G  A  V  D  G  V  K  N  T  L  G  I  G  S  D  K  K  *  K  R  E  N  E  I  N  *  L  I  N  *  L  I  N  T  F  I  N  L  Y  I  S  I  L  I  N  F  S  F  N  S  M  I  F  T  Y  A  L  D  Y  *  A  *  V  K  K  H  N  I  I  S  L  *  D  L  S  P  K  E  L  Q  N  L  I  L  I  K  *  D  D  F  H  R  F  G  L  I  I  V  *  Q  F  H  A  P  Y  I  G  V  I  V  N  F  V  L  L  I  E  I  S  L  V  R  N  S  H  Y  K  Y  V  I  R  K  F  Y  F  V  F  V  </second_frame>
            <third_frame>   K  *  S  I  W  L  K  V  Q  L  M  E  *  R  T  H  L  E  L  D  Q  T  K  S  E  K  E  K  M  K  L  I  N  *  L  I  N  *  L  T  H  L  S  I  Y  I  S  Q  F  *  L  I  F  H  L  I  L  *  F  S  H  M  L  *  I  I  K  H  K  *  K  N  I  I  L  L  V  C  E  I  S  H  Q  K  N  Y  K  I  *  F  L  *  S  E  M  I  F  I  G  L  V  *  L  L  F  N  N  S  M  H  L  I  L  V  L  *  *  I  L  F  Y  *  S  R  F  L  S  L  E  I  L  I  I  S  T  *  *  E  S  F  I  L  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="48984" PGL_stop="56680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48984" e_stop="49231"/>
            <exon e_start="50481" e_stop="50539"/>
            <exon e_start="50881" e_stop="50962"/>
            <exon e_start="51117" e_stop="51184"/>
            <exon e_start="51694" e_stop="51763"/>
            <exon e_start="52408" e_stop="52489"/>
            <exon e_start="52863" e_stop="52927"/>
            <exon e_start="53148" e_stop="54170"/>
            <exon e_start="54284" e_stop="54346"/>
            <exon e_start="54426" e_stop="54472"/>
            <exon e_start="55187" e_stop="55232"/>
            <exon e_start="55341" e_stop="55420"/>
            <exon e_start="55791" e_stop="55904"/>
            <exon e_start="56654" e_stop="56680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.956" e_score="0.927"/>
          <exon-intron don_prob="0.971" acc_prob="0.850" e_score="0.949"/>
          <exon-intron don_prob="0.962" acc_prob="0.985" e_score="0.890"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.608" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="48984" e_stop="49231" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.956">
            <gDNA_intron_boundary i_start="49232" i_stop="50480" i_length="1249"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="50481" e_stop="50539" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.850">
            <gDNA_intron_boundary i_start="50540" i_stop="50880" i_length="341"/>
          </intron>
          <exon e_serial="3" e_score="0.890">
            <gDNA_exon_boundary e_start="50881" e_stop="50962" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.985">
            <gDNA_intron_boundary i_start="50963" i_stop="51116" i_length="154"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="51117" e_stop="51184" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51185" i_stop="51693" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51694" e_stop="51763" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51764" i_stop="52407" i_length="644"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52408" e_stop="52489" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.770" acc_prob="0.981">
            <gDNA_intron_boundary i_start="52490" i_stop="52862" i_length="373"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52863" e_stop="52927" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.765" acc_prob="0.844">
            <gDNA_intron_boundary i_start="52928" i_stop="53147" i_length="220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53148" e_stop="54170" e_length="1023"/>
          </exon>
          <intron i_serial="8" don_prob="0.942" acc_prob="0.895">
            <gDNA_intron_boundary i_start="54171" i_stop="54283" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54284" e_stop="54346" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.910" acc_prob="0.985">
            <gDNA_intron_boundary i_start="54347" i_stop="54425" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54426" e_stop="54472" e_length="47"/>
          </exon>
          <intron i_serial="10" don_prob="0.960" acc_prob="0.896">
            <gDNA_intron_boundary i_start="54473" i_stop="55186" i_length="714"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="55187" e_stop="55232" e_length="46"/>
          </exon>
          <intron i_serial="11" don_prob="0.971" acc_prob="0.608">
            <gDNA_intron_boundary i_start="55233" i_stop="55340" i_length="108"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="55341" e_stop="55420" e_length="80"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55421" i_stop="55790" i_length="370"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="55791" e_stop="55904" e_length="114"/>
          </exon>
          <intron i_serial="13" don_prob="0.991" acc_prob="0.972">
            <gDNA_intron_boundary i_start="55905" i_stop="56653" i_length="749"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="56654" e_stop="56680" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48984" stop="49231"/>
              <exon start="50481" stop="50539"/>
              <exon start="50881" stop="50962"/>
              <exon start="51117" stop="51184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51165" stop="51184"/>
              <exon start="51694" stop="51763"/>
              <exon start="52408" stop="52489"/>
              <exon start="52863" stop="52927"/>
              <exon start="53148" stop="53523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51721" stop="51763"/>
              <exon start="52408" stop="52489"/>
              <exon start="52863" stop="52927"/>
              <exon start="53148" stop="53741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52467" stop="52489"/>
              <exon start="52863" stop="52927"/>
              <exon start="53148" stop="53715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53514" stop="54140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53617" stop="54170"/>
              <exon start="54284" stop="54290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53897" stop="54170"/>
              <exon start="54284" stop="54346"/>
              <exon start="54426" stop="54459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53944" stop="54170"/>
              <exon start="54284" stop="54346"/>
              <exon start="54426" stop="54472"/>
              <exon start="55187" stop="55232"/>
              <exon start="55341" stop="55420"/>
              <exon start="55791" stop="55904"/>
              <exon start="56654" stop="56680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53947" stop="54170"/>
              <exon start="54284" stop="54346"/>
              <exon start="54426" stop="54472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCAAGAACCCCAATTCAGTTTCTTTCTCAAAAAAGCTTTTTTTCTCAAGAAAAGTTAATGGGTTGTTTAGTTATTCTAAATTTGGTGCAAAAGATTCATTCTTTTGTTGTAGTCAAACTAGTGGTGAAATTTTACCCCTTTCATCAGCTCAGAAGGAGAAGGAGACTAGTGAAAGGCCTCCTTTTGATATCAATTTGGCTGTCATTCTTGCTGGTTTTGCTTTTGAAGCTTATACTAGTCCTCCA : GACAATGTCGGAAAGCTTGAGGTGGATGCGGCTAATTGCAAAACCATATTTCTTTCAGA : GTCATTTGTGCGTGAAATTTATGATGGCCAGTTGTTCATAAAGCTAAAGAAAGGTCTCAATTTACCTGCTATGGATCTTTGG : GGAACGAGTGATCCGTATGTGGTGTTACAGCTAGATAGTCAAGTTGTCAAAAGCAAGGTGAAATGGGG : GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG : ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG : GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG : ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG : GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA : ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG : GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG : GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA : GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA : GCGTGGAGCTATACGTGTGACCATGTA</gDNA_template>
            <first_frame> I  S  R  T  P  I  Q  F  L  S  Q  K  S  F  F  S  Q  E  K  L  M  G  C  L  V  I  L  N  L  V  Q  K  I  H  S  F  V  V  V  K  L  V  V  K  F  Y  P  F  H  Q  L  R  R  R  R  R  L  V  K  G  L  L  L  I  S  I  W  L  S  F  L  L  V  L  L  L  K  L  I  L  V  L  Q :   T  M  S  E  S  L  R  W  M  R  L  I  A  K  P  Y  F  F  Q   : S  H  L  C  V  K  F  M  M  A  S  C  S  *  S  *  R  K  V  S  I  Y  L  L  W  I  F  G :   E  R  V  I  R  M  W  C  Y  S  *  I  V  K  L  S  K  A  R  *  N  G   : G  Q  K  S  Q  C  G  M  R  S  L  L  *  I  L  S  S  H  L  C  M  I  F  R :   L  Q  L  G  M  Q  I  W  *  L  H  I  N  A  W  E  M  Q  Q  L  I  W  N  I  S  V  M  :  E  I  L  I  N  C  W  L  I  W  M  E  W  A  V  V  G  R  *  R  *  R :   L  S  T  R  V  L  R  K  L  K  K  K  R  S  G  G  T  S  Q  S  L  Q  N  F  *  E  K  T  G  L  S  L  L  *  R  Q  F  L  V  P  R  L  F  K  L  D  N  L  Y  S  L  R  L  D  R  *  S  Y  L  M  M  H  I  M  I  Q  I  A  A  A  V  L  S  W  N  Q  M  Y  Y  R  S  R  S  N  H  P  T  W  M  T  Q  A  C  P  Q  H  Q  K  S  Q  I  I  *  K  T  P  K  L  M  V  K  *  S  L  I  V  M  E  V  T  *  P  M  N  M  I  P  L  V  L  K  F  *  R  A  F  N  Q  I  N  I  S  G  R  I  L  L  I  P  S  I  K  K  L  F  K  D  L  V  S  L  L  L  R  K  *  S  G  I  I  L  T  C  *  I  R  L  D  C  N  H  E  K  T  R  M  Q  V  M  L  N  L  V  L  Q  L  L  I  N  E  K  M  L  M  V  V  H  Q  L  N  H  L  F  L  I  T  F  S  H  H  F  Q  I  S  R  R  *  H  K  T  Y  C  V  K  L  I  P  F  W  E  H  *  W  F  *  M  P  Q  F  L  N  S  T  K  E  Q  A  F  S  E  R  V  M  L  K  K  I  L  Q  L  D  W  K  M  T  S  F  Y  I  P  *  I  K  M  E  *  C  W  M  R  R  K  L  R  R  *  S  L  F  S  Q  Q  R  R  L  P  W  K  L  G  H  C  *  L  L  H  W  D  I  R  H  S  S  N  L  N  L  T  N  Y  A  S  *  I  M  S  Q  L  T  Q  R :   *  R  S  G  V  I  Q  Q  G  N  G  *  L  L  L  S  G  E  Q  N  K :   Q  N  G  R  I  L  *  R  T  *  C  *  F  L  Q   : G  *  I  L  K  G  *  A  G  T  S  R  K  K  F  R :   F  T  V  V  S  *  V  H  M  I  Q  L  G  L  G  S  S  R  L  S  K  K  Q  L  A  T   : R  M  M  I  L  T  R  Q  T  N  G  M  F  T  *  L  A  I  V  L  V  V  H  W  L  L  F  S  L  L  N  Y  H  Q  V  N  *  L   : S  V  E  L  Y  V  *  P  C  </first_frame>
            <second_frame>  F  Q  E  P  Q  F  S  F  F  L  K  K  A  F  F  L  K  K  S  *  W  V  V  *  L  F  *  I  W  C  K  R  F  I  L  L  L  *  S  N  *  W  *  N  F  T  P  F  I  S  S  E  G  E  G  D  *  *  K  A  S  F  *  Y  Q  F  G  C  H  S  C  W  F  C  F  *  S  L  Y  *  S  S   : R  Q  C  R  K  A  *  G  G  C  G  *  L  Q  N  H  I  S  F  R  :  V  I  C  A  *  N  L  *  W  P  V  V  H  K  A  K  E  R  S  Q  F  T  C  Y  G  S  L   : G  N  E  *  S  V  C  G  V  T  A  R  *  S  S  C  Q  K  Q  G  E  M  G  :  D  K  R  A  N  V  E  *  G  V  C  F  K  Y  *  A  A  T  S  V  *  S  S   : D  C  S  L  G  C  K  S  G  D  S  T  *  T  H  G  K  C  S  S  *  F  G  T  S  L  *  W :   R  F  S  *  T  A  G  *  F  G  W  N  G  R  W  W  E  D  R  D  R   : D  *  V  Q  E  F  *  E  N  *  R  R  K  E  V  V  E  H  P  N  H  Y  R  I  S  K  K  K  R  V  *  V  C  F  E  D  N  S  W  F  R  D  C  S  S  S  T  I  C  T  V  C  V  W  T  D  E  A  T  *  *  C  I  *  *  F  K  *  Q  Q  Q  S  C  P  G  I  R  C  T  T  G  V  A  A  I  I  Q  L  G  *  L  K  H  A  P  S  I  R  N  L  K  *  F  E  R  H  Q  S  *  W  *  S  E  A  *  S  *  W  K  *  R  N  R  *  T  *  F  P  W  Y  *  N  F  R  E  L  S  I  R  *  T  F  L  E  E  F  C  *  Y  R  Q  S  K  S  C  S  K  T  W  S  P  C  S  *  E  N  K  V  G  *  S  *  L  V  K  *  D  W  I  A  I  T  K  R  R  G  C  K  L  C  *  I  W  S  C  N  S  *  *  T  R  K  C  *  W  *  C  I  N  *  I  T  Y  S  *  *  H  S  V  I  T  S  R  Y  Q  E  G  D  T  R  L  I  A  S  N  *  Y  H  F  G  S  I  D  G  S  K  C  H  S  F  S  I  Q  Q  R  S  R  P  F  R  K  G  *  C  *  R  R  F  F  N  W  T  G  K  *  H  P  F  I  S  H  E  *  R  W  N  S  V  G  *  E  E  S  *  G  D  E  V  S  F  L  N  S  G  D  C  H  G  S  L  G  T  A  S  Y  F  I  G  T  S  D  I  H  Q  I  *  I  *  Q  I  M  L  L  R  *  *  V  N  *  H  R   : G  S  A  L  A  *  F  S  K  E  T  V  S  C  C  F  Q  G  N  R  T   : N  K  M  E  G  S  C  D  G  L  D  A  S  S  C  R  :  V  E  S  *  K  D  R  R  G  L  Q  G  R  S  S   : G  S  Q  W  F  P  K  C  I  *  F  S  *  D  *  A  H  L  A  Y  Q  K  S  N  W  L  P  :  G  *  *  S  *  H  A  K  Q  M  A  C  L  R  D  W  P  *  S  W  W  C  I  G  Y  S  S  R  S  *  T  I  I  K  S  T  S  *  :  A  W  S  Y  T  C  D  H  V </second_frame>
            <third_frame>   F  K  N  P  N  S  V  S  F  S  K  K  L  F  F  S  R  K  V  N  G  L  F  S  Y  S  K  F  G  A  K  D  S  F  F  C  C  S  Q  T  S  G  E  I  L  P  L  S  S  A  Q  K  E  K  E  T  S  E  R  P  P  F  D  I  N  L  A  V  I  L  A  G  F  A  F  E  A  Y  T  S  P  P  :  D  N  V  G  K  L  E  V  D  A  A  N  C  K  T  I  F  L  S  E :   S  F  V  R  E  I  Y  D  G  Q  L  F  I  K  L  K  K  G  L  N  L  P  A  M  D  L  W  :  G  T  S  D  P  Y  V  V  L  Q  L  D  S  Q  V  V  K  S  K  V  K  W  G :   T  K  E  P  M  W  N  E  E  F  A  L  N  I  K  Q  P  P  L  Y  D  L  Q  :  I  A  A  W  D  A  N  L  V  T  P  H  K  R  M  G  N  A  A  V  N  L  E  H  L  C  D   : G  D  S  H  K  L  L  V  D  L  D  G  M  G  G  G  G  K  I  E  I  E  :  I  K  Y  K  S  F  E  K  I  E  E  E  K  K  W  W  N  I  P  I  I  T  E  F  L  R  K  N  G  F  E  S  A  L  K  T  I  L  G  S  E  T  V  Q  A  R  Q  F  V  Q  F  A  F  G  Q  M  K  L  L  N  D  A  Y  N  D  S  N  S  S  S  S  P  V  L  E  S  D  V  L  P  E  S  Q  Q  S  S  N  L  D  D  S  S  M  P  P  A  S  E  I  S  N  N  L  K  D  T  K  V  D  G  E  V  K  L  N  R  D  G  S  D  V  T  D  E  H  D  S  P  G  T  K  I  L  E  S  F  Q  S  D  K  H  F  W  K  N  F  A  D  T  V  N  Q  K  V  V  Q  R  L  G  L  P  A  P  E  K  I  K  W  D  N  L  D  L  L  N  K  I  G  L  Q  S  R  K  D  A  D  A  S  Y  V  E  S  G  L  A  T  P  D  K  R  E  N  V  N  G  S  A  S  T  E  S  P  I  L  N  N  I  Q  S  S  L  P  D  I  K  K  V  T  Q  D  L  L  R  Q  T  D  T  I  L  G  A  L  M  V  L  N  A  T  V  S  Q  F  N  K  G  A  G  L  F  G  K  G  D  A  K  E  D  S  S  T  G  L  E  N  D  I  L  L  Y  P  M  N  K  D  G  I  V  L  D  E  K  K  A  E  E  M  K  S  L  F  S  T  A  E  T  A  M  E  A  W  A  L  L  A  T  S  L  G  H  P  T  F  I  K  S  E  F  D  K  L  C  F  L  D  N  E  S  T  D  T  E  :  V  A  L  W  R  D  S  A  R  K  R  L  V  V  A  F  R  G  T  E  Q  :  T  K  W  K  D  L  V  T  D  L  M  L  V  P  A  G :   L  N  P  E  R  I  G  G  D  F  K  E  E  V  Q  :  V  H  S  G  F  L  S  A  Y  D  S  V  R  I  R  L  I  S  L  I  K  K  A  I  G  Y  Q :   D  D  D  L  D  T  P  N  K  W  H  V  Y  V  T  G  H  S  L  G  G  A  L  A  T  L  L  A  L  E  L  S  S  S  Q  L  A  K :   R  G  A  I  R  V  T  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48986" stop="49231"/>
                    <exon start="50481" stop="50539"/>
                    <exon start="50881" stop="50962"/>
                    <exon start="51117" stop="51184"/>
                    <exon start="51694" stop="51763"/>
                    <exon start="52408" stop="52489"/>
                    <exon start="52863" stop="52927"/>
                    <exon start="53148" stop="54170"/>
                    <exon start="54284" stop="54346"/>
                    <exon start="54426" stop="54472"/>
                    <exon start="55187" stop="55232"/>
                    <exon start="55341" stop="55420"/>
                    <exon start="55791" stop="55904"/>
                    <exon start="56654" stop="56678"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2070</number_coding_nucleotides>
                  <number_encoded_amino_acids>690</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKNPNSVSFSKKLFFSRKVNGLFSYSKFGAKDSFFCCSQTSGEILPLSSAQKEKETSERPPFDINLAVILAGFAFEAYTSPPDNVGKLEVDAANCKTIFLSESFVREIYDGQLFIKLKKGLNLPAMDLWGTSDPYVVLQLDSQVVKSKVKWGTKEPMWNEEFALNIKQPPLYDLQIAAWDANLVTPHKRMGNAAVNLEHLCDGDSHKLLVDLDGMGGGGKIEIEIKYKSFEKIEEEKKWWNIPIITEFLRKNGFESALKTILGSETVQARQFVQFAFGQMKLLNDAYNDSNSSSSPVLESDVLPESQQSSNLDDSSMPPASEISNNLKDTKVDGEVKLNRDGSDVTDEHDSPGTKILESFQSDKHFWKNFADTVNQKVVQRLGLPAPEKIKWDNLDLLNKIGLQSRKDADASYVESGLATPDKRENVNGSASTESPILNNIQSSLPDIKKVTQDLLRQTDTILGALMVLNATVSQFNKGAGLFGKGDAKEDSSTGLENDILLYPMNKDGIVLDEKKAEEMKSLFSTAETAMEAWALLATSLGHPTFIKSEFDKLCFLDNESTDTEVALWRDSARKRLVVAFRGTEQTKWKDLVTDLMLVPAGLNPERIGGDFKEEVQVHSGFLSAYDSVRIRLISLIKKAIGYQDDDLDTPNKWHVYVTGHSLGGALATLLALELSSSQLAKRGAIRVTM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54365" e_stop="55420"/>
            <exon e_start="55791" e_stop="55875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.938"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="54365" e_stop="55420" e_length="1056"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55421" i_stop="55790" i_length="370"/>
          </intron>
          <exon e_serial="2" e_score="0.871">
            <gDNA_exon_boundary e_start="55791" e_stop="55875" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54365" stop="55018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54648" stop="55397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54665" stop="55405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54665" stop="54965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54770" stop="55420"/>
              <exon start="55791" stop="55875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTCTCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACAGTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTTTCTTCTCTAAGTCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA : GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCT</gDNA_template>
            <first_frame> H  I  F  K  T  C  *  F  S  L  V  V  D  N  R  F  F  F  Y  P  D  K  M  E  G  S  C  D  G  L  D  A  S  S  C  R  V  K  S  Q  I  C  T  S  T  G  W  L  *  F  F  F  L  S  L  L  C  P  S  G  F  S  V  L  L  R  C  F  S  Y  H  S  K  Q  I  L  L  P  F  N  L  F  V  L  L  S  F  L  I  R  F  E  E  N  V  S  S  F  S  E  N  S  F  I  L  T  F  H  M  T  C  L  R  P  Q  D  Y  S  H  F  G  T  F  Y  I  S  *  F  K  T  T  V  F  K  S  L  L  Y  F  L  K  L  C  A  K  S  K  P  V  K  Q  I  E  T  E  G  V  I  F  S  S  L  S  L  *  K  C  T  F  I  E  I  Q  L  F  T  M  L  K  E  T  F  P  F  S  *  R  N  R  S  R  R  *  P  S  I  L  H  Y  *  V  *  T  A  N  T  I  I  S  K  G  F  P  E  K  S  F  N  F  E  H  N  L  K  Q  Q  E  I  A  K  H  F  G  N  F  E  Y  E  L  Y  V  L  A  S  S  L  F  G  C  C  T  E  T  L  D  G  *  A  T  T  V  H  F  I  S  H  P  E  L  S  P  T  L  Q  V  E  S  *  K  D  R  R  G  L  Q  G  R  S  S  G  G  T  E  I  L  T  F  L  S  L  S  A  *  N  M  N  V  F  Y  L  Y  L  *  F  F  *  L  S  E  P  E  I  I  F  V  G  S  Q  W  F  P  K  C  I  *  F  S  *  D  *  A  H  L  A  Y  Q  K  S  N  W  L  P  :  G  *  *  S  *  H  A  K  Q  M  A  C  L  R  D  W  P  *  S  W  W  C  I  G  Y  S  S  R  </first_frame>
            <second_frame>  T  S  L  K  L  V  D  L  A  *  L  W  I  T  G  F  S  F  I  Q  T  K  W  K  D  L  V  T  D  L  M  L  V  P  A  G  *  N  H  K  S  V  Q  A  Q  A  G  F  S  F  S  F  F  L  Y  F  A  L  L  V  S  L  Y  Y  *  D  V  F  P  I  T  V  N  R  F  S  F  R  S  I  C  L  S  Y  F  P  F  *  S  V  S  K  R  M  S  L  P  F  L  K  T  L  S  F  *  L  S  T  *  H  V  *  D  H  K  I  T  V  I  L  V  H  S  T  Y  H  N  L  R  P  Q  Y  S  K  V  F  F  T  F  L  N  S  V  P  S  Q  N  Q  S  N  K  S  K  R  R  V  *  F  F  L  L  *  V  S  E  S  V  L  L  L  K  Y  N  S  L  L  C  *  K  K  H  F  L  F  L  R  G  I  G  V  E  D  N  L  P  S  Y  I  I  K  F  R  L  Q  I  P  S  Y  L  K  V  F  L  K  K  V  L  T  S  N  I  I  *  N  N  K  K  *  P  N  T  L  V  I  L  N  M  N  C  T  F  L  H  L  H  Y  S  D  V  V  Q  K  L  *  M  V  K  Q  P  L  S  I  L  F  R  I  L  S  C  L  L  L  C  R  L  N  P  E  R  I  G  G  D  F  K  E  E  V  Q  V  A  L  K  F  L  L  F  Y  L  L  V  P  E  I  *  M  Y  S  T  Y  I  Y  N  F  S  N  Y  Q  N  Q  R  L  F  L  *  V  H  S  G  F  L  S  A  Y  D  S  V  R  I  R  L  I  S  L  I  K  K  A  I  G  Y  Q :   D  D  D  L  D  T  P  N  K  W  H  V  Y  V  T  G  H  S  L  G  G  A  L  A  T  L  L  A </second_frame>
            <third_frame>   H  L  *  N  L  L  I  *  L  S  C  G  *  P  V  F  L  L  S  R  Q  N  G  R  I  L  *  R  T  *  C  *  F  L  Q  G  K  I  T  N  L  Y  K  H  R  L  A  L  V  F  L  S  F  S  T  L  P  F  W  F  L  C  T  T  K  M  F  F  L  S  Q  *  T  D  S  P  S  V  Q  F  V  C  L  T  F  L  F  N  P  F  R  R  E  C  L  F  L  F  *  K  L  F  H  S  N  F  P  H  D  M  F  K  T  T  R  L  Q  S  F  W  Y  I  L  H  I  I  I  *  D  H  S  I  Q  K  S  S  L  L  S  *  T  L  C  Q  V  K  T  S  Q  T  N  R  N  G  G  C  N  F  F  F  S  K  S  L  K  V  Y  F  Y  *  N  T  T  L  Y  Y  A  E  R  N  I  S  F  F  L  E  E  *  E  *  K  I  T  F  H  P  T  L  L  S  L  D  C  K  Y  H  H  I  *  R  F  S  *  K  K  F  *  L  R  T  *  F  E  T  T  R  N  S  Q  T  L  W  *  F  *  I  *  I  V  R  S  C  I  F  I  I  R  M  L  Y  R  N  F  R  W  L  S  N  H  C  P  F  Y  F  A  S  *  V  V  S  Y  S  A  G  *  I  L  K  G  *  A  G  T  S  R  K  K  F  R  W  H  *  N  S  Y  F  S  I  S  *  C  L  K  Y  E  C  I  L  L  I  F  I  I  F  L  I  I  R  T  R  D  Y  F  C  R  F  T  V  V  S  *  V  H  M  I  Q  L  G  L  G  S  S  R  L  S  K  K  Q  L  A  T   : R  M  M  I  L  T  R  Q  T  N  G  M  F  T  *  L  A  I  V  L  V  V  H  W  L  L  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54512" stop="54745"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFLSLLCPSGFSVLLRCFSYHSKQILLPFNLFVLLSFLIRFEENVSSFSENSFILTFHMTCLRPQDYSHFGTFYIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="57006" PGL_stop="58430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57006" e_stop="57448"/>
            <exon e_start="57864" e_stop="57944"/>
            <exon e_start="58396" e_stop="58430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57006" e_stop="57448" e_length="443"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="57449" i_stop="57863" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57864" e_stop="57944" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57945" i_stop="58395" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58396" e_stop="58430" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57006" stop="57448"/>
              <exon start="57864" stop="57944"/>
              <exon start="58396" stop="58430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG : GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT : ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</gDNA_template>
            <first_frame> F  D  V  L  S  R  S  L  L  W  R  W  L  V  I  N  E  V  *  N  S  *  T  C  Y  *  I  C  I  G  A  L  S  N  M  S  D  Q  L  L  A  S  L  S  H  N  Q  M  P  Y  H  I  V  C  R  *  F  M  G  I  S  C  L  F  F  Y  C  D  V  V  N  G  C  N  *  I  T  F  A  C  F  G  I  I  L  R  A  *  F  C  *  I  L  S  D  S  I  *  L  S  C  F  L  Y  C  R  K  L  R  T  A  G  G  L  *  I  T  E  I  *  Y  Q  Q  F  L  A  *  W  A  T  A  M  L  L  N  L  F  I  W  Q  L  E  I  R  K  T  Q  W :   I  M  W  N  S  W  K  M  V  T  K  V  M  L  S  E  R  P  H  L  M  L  L  S  V  N  L :   *  K  V  K  K  N  L  L  R  K  Y  </first_frame>
            <second_frame>  L  M  F  S  L  G  L  S  Y  G  G  G  L  S  *  M  K  C  E  T  L  E  H  A  I  E  Y  A  L  V  R  C  L  T  C  Q  T  N  F  *  Q  V  *  A  I  I  R  C  L  I  T  L  F  A  D  S  S  W  E  F  L  A  C  S  S  I  V  T  W  *  T  A  V  T  K  S  L  S  P  A  L  E  S  Y  *  E  L  N  F  V  K  F  *  V  T  L  Y  N  *  V  A  S  Y  I  V  E  S  *  G  Q  L  E  G  C  K  S  Q  R  Y  N  T  N  S  S  S  L  D  G  L  L  P  C  C  S  T  C  L  F  G  S  W  R  S  A  K  H  N   : G  *  C  G  T  L  G  R  W  L  P  R  *  C  Y  R  R  G  H  T  *  C  Y  C  Q  *  I   : Y  E  R  *  K  R  T  Y  *  E  N  T </second_frame>
            <third_frame>   *  C  S  L  S  V  S  P  M  E  V  A  C  H  K  *  S  V  K  L  L  N  M  L  L  N  M  H  W  C  V  V  *  H  V  R  P  T  F  S  K  F  E  P  *  S  D  A  L  S  H  C  L  P  I  V  H  G  N  F  L  P  V  L  L  L  *  R  G  E  R  L  *  L  N  H  F  R  L  L  W  N  H  T  E  S  L  I  L  L  N  S  E  *  L  Y  I  I  K  L  L  L  I  L  *  K  V  K  D  S  W  R  V  V  N  H  R  D  I  I  P  T  V  P  R  L  M  G  Y  C  H  V  A  Q  P  V  Y  L  A  A  G  D  P  Q  N  T  M  :  D  N  V  E  L  L  E  D  G  Y  Q  G  D  V  I  G  E  A  T  P  D  V  I  V  S  E  F  :  M  K  G  E  K  E  L  I  E  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57323" stop="57448"/>
                    <exon start="57864" stop="57944"/>
                    <exon start="58396" stop="58428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKDSWRVVNHRDIIPTVPRLMGYCHVAQPVYLAAGDPQNTMDNVELLEDGYQGDVIGEATPDVIVSEFMKGEKELIEKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="60016" PGL_stop="59322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60016" e_stop="59613"/>
            <exon e_start="59510" e_stop="59322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="0.943"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="60016" e_stop="59613" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="59612" i_stop="59511" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="59510" e_stop="59322" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60016" stop="59613"/>
              <exon start="59510" stop="59322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGACAAAGTGGTTGAAGTGTTGAAATACAATGTAAGGTTTCTTCAAGGTGAGGTGAATGAAATTATGTGTATGAGGGAATATGAGAGTCAAGTCAATGCACAAGAGATGATCATATTTGCATTGAAAGAAGCAGAATGGAAGAAGGAAAAGAAGAAGCTAAAAGAGGAAGTGAAGAAGTTGAAGAAAAACTTGGAAGAAAAAGATGAAGAAGACAAGTGTAAAGCTATAGAGAATTTGTGTGTAAAAGAAGATAAAGAGTGGCATGAATTAGCAACAAGTTATTTGTTGGAGCAAATTAGGAATGAAGAAGCTAGAAGAGATGAAGCAATAGAGAAGTGGAAACAACTTTATTTTGCTATCAAGATTGAGCTTGATGAACTTATTCATAGGACAAATCAAG : GAAGAGGACTATGTTGGAAAATAGAACAAATGGAATTATTAGAGGAGATGCATAAAGAGTTGAAAGAAAAAGAGGAAAAAATTGCACTTCTAAAAGAGGAAATAGCTTCAAAGGAACAACAAGAGCTCAAGAGGGAAAGGGAAGTTGACATTTTAAGGCAAAGTTTGAAAATCATGAGCTATAATATGA</gDNA_template>
            <first_frame> K  R  Q  S  G  *  S  V  E  I  Q  C  K  V  S  S  R  *  G  E  *  N  Y  V  Y  E  G  I  *  E  S  S  Q  C  T  R  D  D  H  I  C  I  E  R  S  R  M  E  E  G  K  E  E  A  K  R  G  S  E  E  V  E  E  K  L  G  R  K  R  *  R  R  Q  V  *  S  Y  R  E  F  V  C  K  R  R  *  R  V  A  *  I  S  N  K  L  F  V  G  A  N  *  E  *  R  S  *  K  R  *  S  N  R  E  V  E  T  T  L  F  C  Y  Q  D  *  A  *  *  T  Y  S  *  D  K  S  R :   K  R  T  M  L  E  N  R  T  N  G  I  I  R  G  D  A  *  R  V  E  R  K  R  G  K  N  C  T  S  K  R  G  N  S  F  K  G  T  T  R  A  Q  E  G  K  G  S  *  H  F  K  A  K  F  E  N  H  E  L  *  Y   </first_frame>
            <second_frame>  K  D  K  V  V  E  V  L  K  Y  N  V  R  F  L  Q  G  E  V  N  E  I  M  C  M  R  E  Y  E  S  Q  V  N  A  Q  E  M  I  I  F  A  L  K  E  A  E  W  K  K  E  K  K  K  L  K  E  E  V  K  K  L  K  K  N  L  E  E  K  D  E  E  D  K  C  K  A  I  E  N  L  C  V  K  E  D  K  E  W  H  E  L  A  T  S  Y  L  L  E  Q  I  R  N  E  E  A  R  R  D  E  A  I  E  K  W  K  Q  L  Y  F  A  I  K  I  E  L  D  E  L  I  H  R  T  N  Q   : G  R  G  L  C  W  K  I  E  Q  M  E  L  L  E  E  M  H  K  E  L  K  E  K  E  E  K  I  A  L  L  K  E  E  I  A  S  K  E  Q  Q  E  L  K  R  E  R  E  V  D  I  L  R  Q  S  L  K  I  M  S  Y  N  M  </second_frame>
            <third_frame>   K  T  K  W  L  K  C  *  N  T  M  *  G  F  F  K  V  R  *  M  K  L  C  V  *  G  N  M  R  V  K  S  M  H  K  R  *  S  Y  L  H  *  K  K  Q  N  G  R  R  K  R  R  S  *  K  R  K  *  R  S  *  R  K  T  W  K  K  K  M  K  K  T  S  V  K  L  *  R  I  C  V  *  K  K  I  K  S  G  M  N  *  Q  Q  V  I  C  W  S  K  L  G  M  K  K  L  E  E  M  K  Q  *  R  S  G  N  N  F  I  L  L  S  R  L  S  L  M  N  L  F  I  G  Q  I  K  :  E  E  D  Y  V  G  K  *  N  K  W  N  Y  *  R  R  C  I  K  S  *  K  K  K  R  K  K  L  H  F  *  K  R  K  *  L  Q  R  N  N  K  S  S  R  G  K  G  K  L  T  F  *  G  K  V  *  K  S  *  A  I  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60015" stop="59613"/>
                    <exon start="59510" stop="59323"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDKVVEVLKYNVRFLQGEVNEIMCMREYESQVNAQEMIIFALKEAEWKKEKKKLKEEVKKLKKNLEEKDEEDKCKAIENLCVKEDKEWHELATSYLLEQIRNEEARRDEAIEKWKQLYFAIKIELDELIHRTNQGRGLCWKIEQMELLEEMHKELKEKEEKIALLKEEIASKEQQELKREREVDILRQSLKIMSYNM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="63181" PGL_stop="66269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63181" e_stop="63267"/>
            <exon e_start="64890" e_stop="66269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63181" e_stop="63267" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="64890" e_stop="66269" e_length="1380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63181" stop="63267"/>
              <exon start="64890" stop="65729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63206" stop="63267"/>
              <exon start="64890" stop="65491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63207" stop="63267"/>
              <exon start="64890" stop="65409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63207" stop="63267"/>
              <exon start="64890" stop="65390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63236" stop="63267"/>
              <exon start="64890" stop="65532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63239" stop="63267"/>
              <exon start="64890" stop="65357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63239" stop="63267"/>
              <exon start="64890" stop="65357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65261" stop="65719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65389" stop="66269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65731" stop="66219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG : TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</gDNA_template>
            <first_frame> L  S  Y  L  P  R  N  L  R  I  L  *  S  Y  R  *  K  *  R  K  N  Q  *  K  F  *  E  F  E  :  S  V  K  W  Q  Q  H  Q  Q  L  L  S  Q  L  V  P  P  H  P  L  A  P  *  *  A  Q  N  Y  N  Q  R  P  L  L  R  N  A  I  P  G  T  T  L  G  V  S  V  A  L  R  Q  R  H  L  Y  D  V  N  P  S  R  H  F  *  E  M  K  A  L  Q  L  F  D  N  P  L  L  L  K  P  E  T  K  S  R  D  L  R  T  M  F  S  L  K  H  L  I  K  W  L  F  S  E  P  L  A  V  *  A  S  L  *  L  F  *  L  R  C  H  R  *  Y  H  R  C  T  F  M  I  L  Q  M  S  K  E  S  Q  Q  I  S  A  I  A  T  L  P  L  R  F  L  T  L  R  E  L  L  S  W  P  I  L  *  K  V  *  M  *  L  S  Y  Q  L  A  F  R  E  S  L  V  *  H  G  T  T  C  S  T  *  M  L  I  L  *  K  A  W  L  R  L  L  L  T  I  A  Q  M  P  L  S  T  L  S  A  I  Q  S  T  P  Q  C  R  L  L  P  R  F  *  S  K  R  V  C  M  I  L  K  N  S  L  V  L  P  P  W  T  L  S  E  Q  T  H  S  S  R  R  R  K  T  *  N  S  L  T  L  T  S  P  *  L  V  G  M  Q  G  *  Q  F  C  H  C  C  Q  R  Q  D  H  Q  L  L  S  R  T  K  K  C  R  N  *  P  *  G  S  K  T  L  G  P  R  S  L  K  Q  R  L  E  Q  D  L  Q  H  C  Q  W  H  M  L  Q  L  D  L  L  N  P  H  F  V  P  L  T  V  M  L  M  F  T  S  V  L  T  F  N  L  T  *  R  N  F  H  S  L  H  H  E  L  N  *  E  G  M  E  S  R  H  *  F  R  L  I  S  V  D  *  L  S  M  N  R  R  H  *  K  L  *  R  *  S  *  K  L  A  L  R  K  G  *  L  M  L  K  N  K  Q  *  V  L  R  E  R  V  *  F  R  L  T  I  G  K  D  S  Q  H  D  N  F  C  M  V  *  T  Y  *  A  L  Y  S  F  Y  W  S  E  L  Y  *  C  F  V  I  A  S  F </first_frame>
            <second_frame>  L  V  I  C  L  G  T  S  E  F  Y  N  L  I  G  R  S  E  E  K  I  S  K  N  S  E  N  L  S :   R  *  N  G  S  S  I  S  N  Y  S  L  S  W  F  R  H  I  L  W  L  H  S  E  P  K  I  T  I  K  G  L  Y  C  E  M  Q  Y  Q  G  L  P  *  E  F  Q  W  P  *  G  R  G  I  C  T  M  *  I  R  V  V  I  S  R  K  *  K  H  C  S  S  S  T  I  H  Y  S  *  S  P  K  P  K  A  E  I  F  E  P  C  S  A  S  S  I  L  *  S  G  C  S  R  S  L  W  R  Y  R  P  A  S  S  S  S  D  *  D  V  T  A  S  I  I  V  A  P  L  *  Y  C  K  C  Q  R  S  R  S  R  S  Q  P  L  Q  H  S  R  S  G  F  *  L  Y  G  S  F  *  V  G  Q  F  F  E  R  Y  R  C  S  C  H  T  S  W  R  S  E  K  A  W  Y  D  T  G  R  L  V  Q  H  K  C  *  Y  C  E  K  L  G  *  G  C  C  *  Q  L  P  R  C  L  Y  P  H  Y  Q  Q  S  S  Q  L  H  S  A  D  C  C  R  G  S  E  A  K  G  C  V  *  S  *  K  T  L  W  C  Y  H  P  G  R  C  Q  S  K  H  I  R  R  A  E  E  K  P  E  T  H  *  R  *  R  P  R  D  W  W  A  C  R  D  N  N  S  A  I  A  V  K  D  K  T  I  N  Y  F  H  G  R  R  S  A  G  T  N  R  E  D  P  K  R  W  D  R  G  R  *  S  K  G  W  S  R  I  C  N  T  V  N  G  I  C  C  S  *  I  C  *  I  L  T  S  C  P  *  R  *  C  *  C  L  R  V  F  L  R  S  I  *  P  D  G  T  S  I  L  C  I  T  S  *  T  R  K  E  W  N  R  G  I  D  F  V  *  S  P  W  I  N  *  V  *  T  E  G  I  R  S  S  K  D  R  V  E  S  *  H  *  E  R  D  S  L  C  S  K  T  N  S  E  C  L  E  K  E  F  S  L  D  *  L  *  E  K  I  L  N  M  T  I  F  A  W  F  E  L  T  K  P  F  I  L  F  I  G  L  N  S  T  S  V  L  L  L  L  P   </second_frame>
            <third_frame>   *  L  S  A  S  E  P  P  N  F  I  I  L  *  V  E  V  K  K  K  S  V  K  I  L  R  I  *   : V  G  E  M  A  A  A  S  A  T  T  L  S  V  G  S  A  T  S  F  G  S  I  V  S  P  K  L  Q  S  K  A  F  I  A  K  C  N  T  R  D  Y  L  R  S  F  S  G  L  K  A  E  A  F  V  R  C  E  S  E  S  S  F  L  G  N  E  S  I  A  A  L  R  Q  S  I  T  P  K  A  R  N  Q  K  Q  R  S  S  N  H  V  Q  P  Q  A  S  Y  K  V  A  V  L  G  A  S  G  G  I  G  Q  P  L  A  L  L  I  K  M  S  P  L  V  S  S  L  H  L  Y  D  I  A  N  V  K  G  V  A  A  D  L  S  H  C  N  T  P  A  Q  V  F  D  F  T  G  A  S  E  L  A  N  S  L  K  G  I  D  V  V  V  I  P  A  G  V  P  R  K  P  G  M  T  R  D  D  L  F  N  I  N  A  N  I  V  K  S  L  V  E  A  V  A  D  N  C  P  D  A  F  I  H  I  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  L  K  Q  K  G  V  Y  D  P  K  K  L  F  G  V  T  T  L  D  V  V  R  A  N  T  F  V  A  Q  K  K  N  L  K  L  I  D  V  D  V  P  V  I  G  G  H  A  G  I  T  I  L  P  L  L  S  K  T  R  P  S  T  T  F  T  D  E  E  V  Q  E  L  T  V  R  I  Q  N  A  G  T  E  V  V  E  A  K  A  G  A  G  S  A  T  L  S  M  A  Y  A  A  A  R  F  V  E  S  S  L  R  A  L  D  G  D  A  D  V  Y  E  C  S  Y  V  Q  S  D  L  T  E  L  P  F  F  A  S  R  V  K  L  G  R  N  G  I  E  A  L  I  S  S  D  L  R  G  L  T  E  Y  E  Q  K  A  L  E  A  L  K  I  E  L  K  A  S  I  E  K  G  I  A  Y  A  Q  K  Q  T  V  S  A  *  R  K  S  L  V  *  I  N  Y  R  K  R  F  S  T  *  Q  F  L  H  G  L  N  L  L  S  P  L  F  F  L  L  V  *  T  L  L  V  F  C  Y  C  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63267" stop="66136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEMAAASATTLSVGSATSFGSIVSPKLQSKAFIAKCNTRDYLRSFSGLKAEAFVRCESESSFLGNESIAALRQSITPKARNQKQRSSNHVQPQASYKVAVLGASGGIGQPLALLIKMSPLVSSLHLYDIANVKGVAADLSHCNTPAQVFDFTGASELANSLKGIDVVVIPAGVPRKPGMTRDDLFNINANIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVIGGHAGITILPLLSKTRPSTTFTDEEVQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSYVQSDLTELPFFASRVKLGRNGIEALISSDLRGLTEYEQKALEALKIELKASIEKGIAYAQKQTVSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="66229" PGL_stop="65494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66229" e_stop="65494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="66229" e_stop="65494" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66229" stop="65494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAAGAATAAAGGGCTTAGTAAGTTCAAACCATGCAAAAATTGTCATGTTGAGAATCTTTTCCTATAGTTAATCTAAACTAAACTCTTTCTCTAAGCACTCACTGTTTGTTTTTGAGCATAAGCTATCCCTTTCTCAATGCTAGCTTTCAACTCTATCTTTAGAGCTTCTAATGCCTTCTGTTCATACTCAGTTAATCCACGGAGATCAGACGAAATCAATGCCTCGATTCCATTCCTTCCTAGTTTAACTCGTGATGCAAAGAATGGAAGTTCCGTCAGGTCAGATTGAACGTAAGAACACTCGTAAACATCAGCATCACCGTCAAGGGCACGAAGTGAGGATTCAACAAATCTAGCTGCAGCATATGCCATTGACAGTGTTGCAGATCCTGCTCCAGCCTTTGCTTCAACGACCTCGGTCCCAGCGTTTTGGATCCTCACGGTTAGTTCCTGCACTTCTTCGTCCGTGAAAGTAGTTGATGGTCTTGTCTTTGACAGCAATGGCAGAATTGTTATCCCTGCATGCCCACCAATCACGGGGACGTCAACGTCAATGAGTTTCAGGTTTTTCTTCTGCGCGACGAATGTGTTTGCTCTGACAACGTCCAGGGTGGTAACACCAAAGAGTTTTTTAGGATCATACACACCCTTTTGCTTCAGAACCTCGGCAGCAATCGGCACTGTGGAGTTGACTGGATTGCTGATAATGTGGATAAAGGCATCTGGGCAATTG</gDNA_template>
            <first_frame> *  K  E  *  R  A  *  *  V  Q  T  M  Q  K  L  S  C  *  E  S  F  P  I  V  N  L  N  *  T  L  S  L  S  T  H  C  L  F  L  S  I  S  Y  P  F  L  N  A  S  F  Q  L  Y  L  *  S  F  *  C  L  L  F  I  L  S  *  S  T  E  I  R  R  N  Q  C  L  D  S  I  P  S  *  F  N  S  *  C  K  E  W  K  F  R  Q  V  R  L  N  V  R  T  L  V  N  I  S  I  T  V  K  G  T  K  *  G  F  N  K  S  S  C  S  I  C  H  *  Q  C  C  R  S  C  S  S  L  C  F  N  D  L  G  P  S  V  L  D  P  H  G  *  F  L  H  F  F  V  R  E  S  S  *  W  S  C  L  *  Q  Q  W  Q  N  C  Y  P  C  M  P  T  N  H  G  D  V  N  V  N  E  F  Q  V  F  L  L  R  D  E  C  V  C  S  D  N  V  Q  G  G  N  T  K  E  F  F  R  I  I  H  T  L  L  L  Q  N  L  G  S  N  R  H  C  G  V  D  W  I  A  D  N  V  D  K  G  I  W  A  I  </first_frame>
            <second_frame>  K  K  N  K  G  L  S  K  F  K  P  C  K  N  C  H  V  E  N  L  F  L  *  L  I  *  T  K  L  F  L  *  A  L  T  V  C  F  *  A  *  A  I  P  F  S  M  L  A  F  N  S  I  F  R  A  S  N  A  F  C  S  Y  S  V  N  P  R  R  S  D  E  I  N  A  S  I  P  F  L  P  S  L  T  R  D  A  K  N  G  S  S  V  R  S  D  *  T  *  E  H  S  *  T  S  A  S  P  S  R  A  R  S  E  D  S  T  N  L  A  A  A  Y  A  I  D  S  V  A  D  P  A  P  A  F  A  S  T  T  S  V  P  A  F  W  I  L  T  V  S  S  C  T  S  S  S  V  K  V  V  D  G  L  V  F  D  S  N  G  R  I  V  I  P  A  C  P  P  I  T  G  T  S  T  S  M  S  F  R  F  F  F  C  A  T  N  V  F  A  L  T  T  S  R  V  V  T  P  K  S  F  L  G  S  Y  T  P  F  C  F  R  T  S  A  A  I  G  T  V  E  L  T  G  L  L  I  M  W  I  K  A  S  G  Q  L </second_frame>
            <third_frame>   K  R  I  K  G  L  V  S  S  N  H  A  K  I  V  M  L  R  I  F  S  Y  S  *  S  K  L  N  S  F  S  K  H  S  L  F  V  F  E  H  K  L  S  L  S  Q  C  *  L  S  T  L  S  L  E  L  L  M  P  S  V  H  T  Q  L  I  H  G  D  Q  T  K  S  M  P  R  F  H  S  F  L  V  *  L  V  M  Q  R  M  E  V  P  S  G  Q  I  E  R  K  N  T  R  K  H  Q  H  H  R  Q  G  H  E  V  R  I  Q  Q  I  *  L  Q  H  M  P  L  T  V  L  Q  I  L  L  Q  P  L  L  Q  R  P  R  S  Q  R  F  G  S  S  R  L  V  P  A  L  L  R  P  *  K  *  L  M  V  L  S  L  T  A  M  A  E  L  L  S  L  H  A  H  Q  S  R  G  R  Q  R  Q  *  V  S  G  F  S  S  A  R  R  M  C  L  L  *  Q  R  P  G  W  *  H  Q  R  V  F  *  D  H  T  H  P  F  A  S  E  P  R  Q  Q  S  A  L  W  S  *  L  D  C  *  *  C  G  *  R  H  L  G  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65919" stop="65494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSASPSRARSEDSTNLAAAYAIDSVADPAPAFASTTSVPAFWILTVSSCTSSSVKVVDGLVFDSNGRIVIPACPPITGTSTSMSFRFFFCATNVFALTTSRVVTPKSFLGSYTPFCFRTSAAIGTVELTGLLIMWIKASGQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="92347" PGL_stop="91907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92347" e_stop="91907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="92347" e_stop="91907" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92347" stop="91907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACACAAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTTTTAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  S  E  Y  E  I  K  L  Q  Y  T  Q  N  N  S  L  I  F  F  L  *  T  K  E  *  K  K  K  T  K  *  G  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  K  I  Y  L  E  L  L  *  K  N  H  M  Y  H  *  I  I  F  F  *  K  L  *  V  I  N  I  N  L  K  L  I  I  *  L  S  S  N  E  G  Y  M  *  A  I  L  *  R  *  V  Y  M  *  A  I  C  I  T  V  R  A  Y  M  S  H  F  H  N  E  G  C  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  P  N  T  K  L  N  Y  N  T  H  K  T  I  V  *  F  F  F  F  K  L  R  N  E  R  K  K  Q  N  K  D  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  K  Y  T  L  N  F  Y  R  R  I  I  C  T  T  K  *  F  F  F  K  N  Y  K  *  *  I  *  I  *  N  *  L  F  N  F  R  Q  M  K  G  I  C  E  P  F  C  N  G  R  C  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  V  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  F  R  I  R  N  *  I  T  I  H  T  K  Q  *  F  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  N  I  P  *  T  F  I  E  E  S  Y  V  P  L  N  N  F  F  L  K  I  I  S  N  K  Y  K  F  K  T  N  Y  L  T  F  V  K  *  R  V  Y  V  S  H  F  V  T  V  G  V  Y  V  S  H  L  Y  N  G  K  G  I  Y  E  P  L  S  *  R  G  M  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 608 chains have been computed
$ 
$ memory statistics:
$ 545376 bytes spliced alignments in total
$ 226 spliced alignments have been stored
$ 2413 bytes was the average size of a spliced alignment
$ 34808 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1657 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 859 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-23 17:40:19
-->
