<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:26:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0300E15-PxybM/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7436-2" ref_strand="+" ref_description="SGN-M7436-2 C2_At2g38000-2 [cosii_markers]">
      <seq>tttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtaccgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggtggtggttctcttttgacacagaaagtagctgttgttagatggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactatccttctaggttttgttggggcctttgcccttgcctggaatggttgaagttataattcaagaactggatttgttgttgtcatcattggtttgagtttgtcccaagtgttcaaggggacacaaatgttggtttttgtgtagaataatatgctttatgatttgcactgttcccaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 upload_account_name:spain">
        <position start="53794" stop="51515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53494" g_stop="53377" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53170" g_stop="53045" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="245" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52328" g_stop="51815" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="760" r_length="515" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-M7436-2" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7436-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53494" e_stop="53377"/>
          <exon e_start="53170" e_stop="53045"/>
          <exon e_start="52328" e_stop="51815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTA-CGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACA-AAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAA</genome_strand>
        <mrna_strand>TTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACCGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACACAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7436" ref_strand="+" ref_description="SGN-M7436 C2_At2g38000 [cosii_markers]">
      <seq>ctcgttcggaaactattgagaaatgttcaggttgtgatggtagaggcaatatagtttgtcccacttgtaatgcagatcaagagccagggttttataaggagggtcaaatggcccagtgtcctacttgctatggaaggggtctaattgctcataaggacggatctgacacaatatgcctgcagtgtaaaggtaatggaaaaattccttgtgcgacctgtcaatctcatggcctcatcaaatgccaaacatgccaaggtgacggttctcttttgacacggaaagtagctgttgttagatggaggacacgttcagcccggaaagtaaatgcaacaagtggagcagcttctgttccagatgatgtgttccacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacaccagcctactttgctgattcttatttccttaacaagttctcttctgaagtaattgcagagaggccttctatacctactactgcaaggattatatgtgagcgccataccatctctgttgtcccggtgactcgcgtgaccatgactgatcttaaccgctcctttagcttctatattattggaaatgacacagaggtttatatgaaagactactatccttccaggttttgttggggcctttgcccttgcctggaatggctgaagttataattgaagaactgggtttgtttttatcattggtctgagtttggcccaatagtccaggggagaacatgttggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 upload_account_name:spain">
        <position start="54006" stop="51617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53706" g_stop="53677" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53676" i_stop="53519" i_length="158">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53518" g_stop="53377" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="172" r_length="142" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206">
            <donor d_prob="0.700" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53170" g_stop="53045" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="298" r_length="126" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.828" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52328" g_stop="51866" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="757" r_length="459" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-M7436" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53706" e_stop="53677"/>
          <exon e_start="53518" e_stop="53377"/>
          <exon e_start="53170" e_stop="53045"/>
          <exon e_start="52328" e_stop="51866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTT</genome_strand>
        <mrna_strand>CTCGTTCGGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTAGAGGCAATATAGTTTGTCCCACTTGTAATGCAGATCAAGAGCCAGGGTTTTATAAGGAGGGTCAAATGGCCCAGTGTCCTACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGACGGATCTGACACAAT..............................................................................................................................................................................................................ATGCCTGCAGTGTAAAGGTAATGGAAAAATTCCTTGTGCGACCTGTCAATCTCATGGCCTCATCAAATGCCAAACATGCCAAGGTGACGGTTCTCTTTTGACACGGAAAGTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACACGTTCAGCCCGGAAAGTAAATGCAACAAGTGGAGCAGCTTCTGTTCCAGATGATGTGTTCCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACACCAGCCTACTTTGCTGATTCTTATTTCCTTAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTATACCTACTACTGCAAGGATTATATGTGAGCGCCATACCATCTCTGTTGTCCCGGTGACTCGCGTGACCATGACTGATCTTAACCGCTCCTTTAGCTTCTATATTATTGGAAATGACACAGAGGTTTATATGAAAGACTACTATCCTTCCAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGCTGAAGTTATAATTGAAGAACTGGGTTTGTT-TT-T-ATCATTGGTCTGAGTTTGGCCCAA-TAGTCCAGGGGAGAACATGTTGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7436-3" ref_strand="+" ref_description="SGN-M7436-3 C2_At2g38000-3 [cosii_markers]">
      <seq>cctcgtgcccggtgatctgagtcttaaatttgttaggagcaatggagcagccactgttgataggggaagtagctagtgaaacaggtcaaagagggagtgggaaatggggttcttatgagtatgtgggaagggcgggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccaatcccagtcccagccacagttttatgagcaagggattgtttatcagggtgggtactacggagatgcaagtggaactactggtgatctacggaggcaagtgctaatgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcattgaaggaaaggacaaggggcctgaaacaggaatatgggagctggatttaaggtctgagtttcctgtattatttgtaccttacaaggaatcgagactgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatgcagatcaagattcaggggttctacaagggagggtcaaatgactgagtgtacgacttgctatggaaggggtctgattgcttcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttggtgcgacttgtgaatctcgtgggcttcatcaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 upload_account_name:spain">
        <position start="56686" stop="52802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56391" g_stop="56328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55220" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="277" r_length="214" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55219" i_stop="54494" i_length="726">
            <donor d_prob="0.892" d_score="0.94"/>
            <acceptor a_prob="0.620" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54493" g_stop="54480" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="291" r_length="14" r_score="0.571"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54479" i_stop="54391" i_length="89">
            <donor d_prob="0.801" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54390" g_stop="54318" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="364" r_length="73" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54008" g_stop="53677" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="695" r_length="331" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53676" i_stop="53519" i_length="158">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53518" g_stop="53377" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="840" r_length="145" r_score="0.930"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206">
            <donor d_prob="0.700" d_score="0.94"/>
            <acceptor a_prob="0.928" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53170" g_stop="53101" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="912" r_length="72" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-M7436-3" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7436-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56391" e_stop="56328"/>
          <exon e_start="55433" e_stop="55220"/>
          <exon e_start="54493" e_stop="54480"/>
          <exon e_start="54390" e_stop="54318"/>
          <exon e_start="54008" e_stop="53677"/>
          <exon e_start="53518" e_stop="53377"/>
          <exon e_start="53170" e_stop="53101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCA-GGGTTCTACAA-GGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGC-TCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTT-GTGTGACTTGTGAATCTCGT-GGCCTCATCAAATGC</genome_strand>
        <mrna_strand>CCTCGTGCCCGGTGATCTGAGTCTTAAATTTGTT-AGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGGGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCGGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAATCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGCCACAGT.........................................................................................TTTATGAGCAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGAACTACTGGTGATCTACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTA-ATGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATTGAAGGAAAGGACAAGGGGCCTGAAACAGGAATATGGGAGCTGGATTTAAGGTCTGAGTTTCCTGTATTATTTGTACCTTACAAGGAATCGAGACTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATGCAGATCAAGATTCAGGGGTTCTACAAGGGAGGGTCAAATGACTGAGTGTACGACTTGCTATGGAAGGGGTCTGATTGCTTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGGTGCGACTTGTGAATCTCGTGGGCTTCATCAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1939" ref_strand="+" ref_description="SGN-M1939 T1343 [cos_markers]">
      <seq>gcaatggagcagccactgttgatagggaacgtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttggctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttatagagaaggagctgtactccggtggcagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 upload_account_name:spain">
        <position start="56652" stop="53508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56352" g_stop="56328" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55433" g_stop="55212" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="247" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54384" g_stop="54318" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="314" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54008" g_stop="53809" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="514" r_length="200" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-M1939" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56352" e_stop="56328"/>
          <exon e_start="55433" e_stop="55212"/>
          <exon e_start="54384" e_stop="54318"/>
          <exon e_start="54008" e_stop="53809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCG</genome_strand>
        <mrna_strand>GCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTGGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTATAGAGAAGGAGCTGTACTCCGGTGGCAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1816" ref_strand="+" ref_description="SGN-M1816 T1177 [cos_markers]">
      <seq>caaaatcatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggcccacaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcaccttacttgatggagagatggtaattgatactttgcctgacacacagaagcacgaaaggagatacctaatttatgatatgattgctttgaaccaattgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttattatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacgaaacttctcaaagaatgtatcccaaagctttcacatgaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0300E15-PxybM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0300E15.2" temp_strand="-" temp_description="C09HBa0300E15.2  EF647596.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0300E15 upload_account_name:spain">
        <position start="92980" stop="89413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92680" g_stop="92630" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92629" i_stop="92408" i_length="222">
            <donor d_prob="0.091" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92407" g_stop="92361" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="98" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92360" i_stop="90578" i_length="1783">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90577" g_stop="90415" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="261" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90414" i_stop="90293" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90292" g_stop="90155" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="399" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90023" g_stop="89901" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="522" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89900" i_stop="89797" i_length="104">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89796" g_stop="89713" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="606" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0300E15.2" gen_strand="-" ref_id="SGN-M1816" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0300E15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92680" e_stop="92630"/>
          <exon e_start="92407" e_stop="92361"/>
          <exon e_start="90577" e_stop="90415"/>
          <exon e_start="90292" e_stop="90155"/>
          <exon e_start="90023" e_stop="89901"/>
          <exon e_start="89796" e_stop="89713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGAT</genome_strand>
        <mrna_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACCTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCACGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATGTATCCCAAAGCTTTCACATGAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="56391" PGL_stop="51815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56391" e_stop="56328"/>
            <exon e_start="55433" e_stop="55220"/>
            <exon e_start="54493" e_stop="54480"/>
            <exon e_start="54390" e_stop="54318"/>
            <exon e_start="54008" e_stop="53677"/>
            <exon e_start="53518" e_stop="53377"/>
            <exon e_start="53170" e_stop="53045"/>
            <exon e_start="52328" e_stop="51815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="0.859"/>
          <exon-intron don_prob="0.892" acc_prob="0.620" e_score="0.972"/>
          <exon-intron don_prob="0.801" acc_prob="0.000" e_score="0.571"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.918"/>
          <exon-intron don_prob="0.760" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="0.983"/>
          <exon-intron don_prob="0.937" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.859">
            <gDNA_exon_boundary e_start="56391" e_stop="56328" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="55433" e_stop="55220" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="0.620">
            <gDNA_intron_boundary i_start="55219" i_stop="54494" i_length="726"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="54493" e_stop="54480" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.801" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54479" i_stop="54391" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.918">
            <gDNA_exon_boundary e_start="54390" e_stop="54318" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="54008" e_stop="53677" e_length="332"/>
          </exon>
          <intron i_serial="5" don_prob="0.760" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53676" i_stop="53519" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="53518" e_stop="53377" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="53376" i_stop="53171" i_length="206"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53170" e_stop="53045" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.937" acc_prob="0.828">
            <gDNA_intron_boundary i_start="53044" i_stop="52329" i_length="716"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="52328" e_stop="51815" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56391" stop="56328"/>
              <exon start="55433" stop="55220"/>
              <exon start="54493" stop="54480"/>
              <exon start="54390" stop="54318"/>
              <exon start="54008" stop="53677"/>
              <exon start="53518" stop="53377"/>
              <exon start="53170" stop="53101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7436-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53706" stop="53677"/>
              <exon start="53518" stop="53377"/>
              <exon start="53170" stop="53045"/>
              <exon start="52328" stop="51866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53494" stop="53377"/>
              <exon start="53170" stop="53045"/>
              <exon start="52328" stop="51815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7436-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG : GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACA : ATCACTTGCACGGT : TTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG : GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG : GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAA</gDNA_template>
            <first_frame> L  F  E  L  *  S  E  S  *  I  C  W  G  A  M  E  Q  P  L  L  I   : G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q :   S  L  A  R   : F  A  E  Q  G  I  V  Y  Q  G  G  Y  Y  G  D  A  S  G  T  T  G  D  Q  R  R :   Q  V  L  D  E  V  E  V  R  E  L  L  I  D  H  V  G  H  R  C  C  W  G  S  R  P  A  R  T  W  K  I  H  A  I  E  D  C  N  V  Y  V  G  T  L  E  T  F  T  E  E  R  D  T  V  V  E  K  E  L  Y  S  G  G  S  I  E  G  K  D  K  G  P  E  T  G  I  W  E  L  D  L  R  S  E  F  P  V  L  F  V  P  Y  K  E  S  R  L  R  I  P  H  S  E  T  I  E  K  C  S   : G  C  D  G  R  G  N  T  V  C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q  G  G  G  S  L  L  T  Q  K  V  A  V  V  R  W :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N  D  R  E  V  Y  M  K  D  Y  Y  P  S  R  F  C  W  G  L  C  P  C  L  E  W  L  K  L  *  F  K  N  W  I  C  C  C  H  H  W  F  E  F  V  P  S  V  Q  G  D  K  M  L  V  F  V  *  N  N  M  L  Y  D  L  H  C  S  Q  I  K  R  K </first_frame>
            <second_frame>  Y  L  N  C  D  L  S  L  K  F  V  G  E  Q  W  S  S  H  C  *  *  :  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H   : N  H  L  H  G  :  L  Q  N  K  G  L  F  I  R  V  G  T  T  E  M  Q  V  G  L  L  V  I  N  G   : G  K  C  *  T  R  *  K  Y  E  S  C  L  *  I  M  L  A  I  A  A  V  G  E  V  V  Q  L  G  P  G  R  F  M  Q  L  K  T  A  M  S  M  W  E  L  W  K  L  S  R  K  R  E  I  Q  L  *  R  R  S  C  T  P  V  A  A  S  K  E  R  T  R  D  L  K  Q  E  Y  G  S  *  I  *  G  L  S  F  L  F  Y  L  Y  L  T  R  N  Q  G  *  E  F  L  I  Q  K  L  L  R  N  V  Q  :  V  V  M  V  E  A  I  Q  F  V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  V  V  V  L  F  *  H  R  K  *  L  L  L  D   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E  M  T  E  R  F  I  *  K  T  T  I  L  L  G  F  V  G  A  F  A  L  A  W  N  G  *  S  Y  N  S  R  T  G  F  V  V  V  I  I  G  L  S  L  S  Q  V  F  K  G  T  K  C  W  F  L  C  R  I  I  C  F  M  I  C  T  V  P  K  *  K  E   </second_frame>
            <third_frame>   I  *  T  V  I  *  V  L  N  L  L  G  S  N  G  A  A  T  V  D  R :   E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  :  I  T  C  T  V :   C  R  T  R  D  C  L  S  G  W  V  L  R  R  C  K  W  D  Y  W  *  S  T  E  :  A  S  A  R  R  G  R  S  T  R  V  A  Y  R  S  C  W  P  S  L  L  L  G  K  S  S  S  S  D  L  E  D  S  C  N  *  R  L  Q  C  L  C  G  N  S  G  N  F  H  G  R  E  R  Y  S  C  R  E  G  A  V  L  R  W  Q  H  R  R  K  G  Q  G  T  *  N  R  N  M  G  A  R  F  K  V  *  V  S  C  F  I  C  T  L  Q  G  I  K  A  E  N  S  S  F  R  N  Y  *  E  M  F  R :   L  *  W  S  R  Q  Y  S  L  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R  W  W  F  S  F  D  T  E  S  S  C  C  *  M  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  *  Q  R  G  L  Y  E  R  L  L  S  F  *  V  L  L  G  P  L  P  L  P  G  M  V  E  V  I  I  Q  E  L  D  L  L  L  S  S  L  V  *  V  C  P  K  C  S  R  G  Q  N  V  G  F  C  V  E  *  Y  A  L  *  F  A  L  F  P  N  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56364" stop="56328"/>
                    <exon start="55433" stop="55220"/>
                    <exon start="54493" stop="54480"/>
                    <exon start="54390" stop="54318"/>
                    <exon start="54008" stop="53677"/>
                    <exon start="53518" stop="53377"/>
                    <exon start="53170" stop="53045"/>
                    <exon start="52328" stop="51944"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWGAMEQPLLIGKVASETGQRGSEKWGSYEYVGRAGSVIPTTSLAGSEVSVDEIRSAASMSVPYSPSLHAPLISSPQSQSQPQSLARFAEQGIVYQGGYYGDASGTTGDQRRQVLDEVEVRELLIDHVGHRCCWGSRPARTWKIHAIEDCNVYVGTLETFTEERDTVVEKELYSGGSIEGKDKGPETGIWELDLRSEFPVLFVPYKESRLRIPHSETIEKCSGCDGRGNTVCPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGGSLLTQKVAVVRWRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGNDREVYMKDYYPSRFCWGLCPCLEWLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56352" e_stop="56328"/>
            <exon e_start="55433" e_stop="55212"/>
            <exon e_start="54384" e_stop="54318"/>
            <exon e_start="54008" e_stop="53809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56352" e_stop="56328" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="56327" i_stop="55434" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="55433" e_stop="55212" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55211" i_stop="54385" i_length="827"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54384" e_stop="54318" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54317" i_stop="54009" i_length="309"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="54008" e_stop="53809" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56352" stop="56328"/>
              <exon start="55433" stop="55212"/>
              <exon start="54384" stop="54318"/>
              <exon start="54008" stop="53809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATGGAGCAGCCACTGTTGATAG : GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG : GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCG</gDNA_template>
            <first_frame> A  M  E  Q  P  L  L  I   : G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G  G  Y  Y  G  D  A  S  G  T  T  G  D  Q  R  R :   Q  V  L  D  E  V  E  V  R  E  L  L  I  D  H  V  G  H  R  C  C  W  G  S  R  P  A  R  T  W  K  I  H  A  I  E  D  C  N  V  Y  V  G  T  L  E  T  F  T  E  E  R  D  T  V  V  E  K  E  L  Y  S  G  G  S  I  </first_frame>
            <second_frame>  Q  W  S  S  H  C  *  *  :  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  G  T  T  E  M  Q  V  G  L  L  V  I  N  G   : G  K  C  *  T  R  *  K  Y  E  S  C  L  *  I  M  L  A  I  A  A  V  G  E  V  V  Q  L  G  P  G  R  F  M  Q  L  K  T  A  M  S  M  W  E  L  W  K  L  S  R  K  R  E  I  Q  L  *  R  R  S  C  T  P  V  A  A  S </second_frame>
            <third_frame>   N  G  A  A  T  V  D  R :   E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  W  V  L  R  R  C  K  W  D  Y  W  *  S  T  E  :  A  S  A  R  R  G  R  S  T  R  V  A  Y  R  S  C  W  P  S  L  L  L  G  K  S  S  S  S  D  L  E  D  S  C  N  *  R  L  Q  C  L  C  G  N  S  G  N  F  H  G  R  E  R  Y  S  C  R  E  G  A  V  L  R  W  Q  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56352" stop="56328"/>
                    <exon start="55433" stop="55212"/>
                    <exon start="54384" stop="54318"/>
                    <exon start="54008" stop="53810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMEQPLLIGKVASETGQRGSEKWGSYEYVGRAGSVIPTTSLAGSEVSVDEIRSAASMSVPYSPSLHAPLISSPQSQSQPQFYEQGIVYQGGYYGDASGTTGDQRRQVLDEVEVRELLIDHVGHRCCWGSRPARTWKIHAIEDCNVYVGTLETFTEERDTVVEKELYSGGSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="92680" PGL_stop="89713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92680" e_stop="92630"/>
            <exon e_start="92407" e_stop="92361"/>
            <exon e_start="90577" e_stop="90415"/>
            <exon e_start="90292" e_stop="90155"/>
            <exon e_start="90023" e_stop="89901"/>
            <exon e_start="89796" e_stop="89713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.091" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.834" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92680" e_stop="92630" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.091" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92629" i_stop="92408" i_length="222"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92407" e_stop="92361" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="92360" i_stop="90578" i_length="1783"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90577" e_stop="90415" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.622" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90414" i_stop="90293" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="90292" e_stop="90155" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90154" i_stop="90024" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90023" e_stop="89901" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.972">
            <gDNA_intron_boundary i_start="89900" i_stop="89797" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="89796" e_stop="89713" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92680" stop="92630"/>
              <exon start="92407" stop="92361"/>
              <exon start="90577" stop="90415"/>
              <exon start="90292" stop="90155"/>
              <exon start="90023" stop="89901"/>
              <exon start="89796" stop="89713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG : GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG : GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA : GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG : CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG : GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGAT</gDNA_template>
            <first_frame> Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  :  G  R  G  P  Q  F  P  G  S  H  P  V  S  L  D  R :   E  N  L  Q  L  L  R  Q  R  Y  Y  Y  A  T  W  K  A  D  G  T  R  Y  M  M  L  I  T  M  D  G  C  F  L  I  D  R  H  F  N  F  R  R  V  Q  M  R  F  P  C  R  H  T  N  E  :  G  L  A  E  K  T  H  H  F  T  L  L  D  G  E  M  V  I  D  T  L  P  D  T  Q  K  Q  E  R  R  Y  L  I  Y  D  M  I  A  L  N  Q  L  S  V  I  E  :  R  P  F  Y  E  R  W  R  M  I  D  K  E  V  I  G  P  R  N  Y  E  R  Q  H  I  Y  Q  S  R  N  P  Y  Y  R  Y  E  L  E  P  F  R  :  V  R  R  K  D  F  F  L  L  S  T  V  T  K  L  L  K  E  F  I  P  K  L  S  H  E  A  D </first_frame>
            <second_frame>  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G :   V  E  A  H  N  F  L  A  H  I  Q  S  L  L  T   : G  K  T  C  S  Y  *  G  S  V  T  T  M  P  L  G  R  L  M  G  H  G  I  *  C  *  S  R  W  M  V  V  S  *  L  I  G  I  S  T  F  G  G  F  R  *  D  F  L  A  D  T  L  M  K :   V  *  P  K  R  P  T  T  S  L  Y  L  M  E  R  W  *  L  I  L  C  L  T  H  R  S  R  K  G  D  T  *  F  M  I  *  L  L  *  T  N  C  L  S  L  S :   D  P  F  M  N  G  G  E  *  S  T  K  K  *  L  V  Q  G  I  M  N  V  N  I  Y  T  R  V  E  T  L  I  I  D  M  S  W  S  L  S  G :   *  G  G  R  I  F  F  C  S  L  L  S  R  N  F  S  K  N  L  S  Q  S  F  H  M  K  L   </second_frame>
            <third_frame>   K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R   : G  *  R  P  T  I  S  W  L  T  S  S  L  S  *  Q  :  G  K  L  A  V  I  K  A  A  L  L  L  C  H  L  E  G  *  W  D  T  V  Y  D  A  D  H  D  G  W  L  F  L  N  *  *  A  F  Q  L  S  E  G  S  D  E  I  S  L  Q  T  H  *  *   : R  F  S  R  K  D  P  P  L  H  F  T  *  W  R  D  G  N  *  Y  F  A  *  H  T  E  A  G  K  E  I  P  N  L  *  Y  D  C  F  E  P  I  V  C  H  *   : A  T  L  L  *  T  V  E  N  D  R  Q  R  S  D  W  S  K  E  L  *  T  S  T  Y  I  P  E  *  K  P  L  L  *  I  *  V  G  A  F  Q   : G  E  E  E  G  F  F  S  A  L  Y  C  H  E  T  S  Q  R  I  Y  P  K  A  F  T  *  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0300E15.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92680" stop="92630"/>
                    <exon start="92407" stop="92361"/>
                    <exon start="90577" stop="90415"/>
                    <exon start="90292" stop="90155"/>
                    <exon start="90023" stop="89901"/>
                    <exon start="89796" stop="89713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNHLRQFCYQALKMTPGGRGPQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRHFNFRRVQMRFPCRHTNEGLAEKTHHFTLLDGEMVIDTLPDTQKQERRYLIYDMIALNQLSVIERPFYERWRMIDKEVIGPRNYERQHIYQSRNPYYRYELEPFRVRRKDFFLLSTVTKLLKEFIPKLSHEAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 11912 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2382 bytes was the average size of a spliced alignment
$ 7272 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3636 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 26 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:26:09
-->
