<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 11:48:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207182" ref_strand="+" ref_description="SGN-E207182 [cLEC-30-M10]">
      <seq>tgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacagtgggggaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="1192" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="892" g_stop="844" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="843" i_stop="643" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="642" g_stop="565" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="564" i_stop="404" i_length="161">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="403" g_stop="267" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="264" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="266" i_stop="188" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="187" g_stop="85" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="367" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E207182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="892" e_stop="844"/>
          <exon e_start="642" e_stop="565"/>
          <exon e_start="403" e_stop="267"/>
          <exon e_start="187" e_stop="85"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG</genome_strand>
        <mrna_strand>TGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG.................................................................................................................................................................TGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341894" ref_strand="+" ref_description="SGN-E341894 [cTOF-9-G5]">
      <seq>tatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgatttggtggagacgtgtacagaccctgctgctattgaccaatcttgttattttgggtaaacaagttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="1650" stop="38"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1350" g_stop="1314" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1313" i_stop="1241" i_length="73">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1240" g_stop="1139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="139" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1138" i_stop="997" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="996" g_stop="844" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="292" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="843" i_stop="643" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="642" g_stop="565" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="373" r_length="81" r_score="0.897"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="564" i_stop="393" i_length="172">
            <donor d_prob="0.970" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="392" g_stop="338" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="428" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E341894" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1350" e_stop="1314"/>
          <exon e_start="1240" e_stop="1139"/>
          <exon e_start="996" e_stop="844"/>
          <exon e_start="642" e_stop="565"/>
          <exon e_start="392" e_stop="338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGA-TTGCTGGAGACGTGTACAGA-CCTGCTGCTATTGACCAA-CTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCC</genome_strand>
        <mrna_strand>TATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTTGGTGGAGACGTGTACAGACCCTGCTGCTATTGACCAATCTTGTTATTTTGGGTAAACAA............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250723" ref_strand="+" ref_description="SGN-E250723 [cLEG-7-M14]">
      <seq>gaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgtcgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="1251" stop="80"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="951" g_stop="844" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="843" i_stop="643" i_length="201">
            <donor d_prob="0.771" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="642" g_stop="565" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="186" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="564" i_stop="393" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="392" g_stop="380" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="199" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E250723" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="951" e_stop="844"/>
          <exon e_start="642" e_stop="565"/>
          <exon e_start="392" e_stop="380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTG</genome_strand>
        <mrna_strand>GAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTCGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340947" ref_strand="+" ref_description="SGN-E340947 [cTOF-5-I12]">
      <seq>tcatccatagcagagacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgctatttggtattttgaacactaatatttgtggttccactagttagtcaacttggcattaaactagctgtgttacatacataagttgtaacttgtaagtatgaactatgtctagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="5307" stop="2989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5005" g_stop="4748" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="273" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4747" i_stop="3653" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3652" g_stop="3289" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="637" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E340947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5005" e_stop="4748"/>
          <exon e_start="3652" e_stop="3289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAGTTC</genome_strand>
        <mrna_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308527" ref_strand="+" ref_description="SGN-E308527 [cLEY-21-N7]">
      <seq>ctcgtgccgaattcggcacgaggatccatagcagagacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgctatttggtattttgaacactaatatttgtggttccactagttagtcaacttggcattaaactagctgtgttacatacataagttgtaacttgtaagtatgaactatgtctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="5307" stop="2992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5005" g_stop="4748" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="294" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4747" i_stop="3653" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3652" g_stop="3292" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="655" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E308527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5005" e_stop="4748"/>
          <exon e_start="3652" e_stop="3292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAG</genome_strand>
        <mrna_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318688" ref_strand="+" ref_description="SGN-E318688 [cTOB-9-E6]">
      <seq>atgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtgagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtgtcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaaggtaagctctgtgcttagatgtaaacttgattttcttcaactgatgctatttggtattttgaacactaatatttgtggttccactagttagtcaacttggcattaaactagctgtgttacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="5297" stop="3026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4997" g_stop="4748" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4747" i_stop="3653" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3652" g_stop="3326" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="577" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E318688" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4997" e_stop="4748"/>
          <exon e_start="3652" e_stop="3326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACA</genome_strand>
        <mrna_strand>ATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTGAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTGTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGGTAAGCTCTGTGCTTAGATGTAAACTTGATTTTCTTCAACTGATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346024" ref_strand="+" ref_description="SGN-E346024 [cTOF-24-I14]">
      <seq>agacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgcctatttggtattttgaacactaatattttgtggttccactagttagtcaacttggcattaaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="5307" stop="3041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5007" g_stop="4748" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4747" i_stop="3653" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3652" g_stop="3341" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="574" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="588"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E346024" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5007" e_stop="4748"/>
          <exon e_start="3652" e_stop="3341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATG-CTATTTGGTATTTTGAACACTAATA-TTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTA</genome_strand>
        <mrna_strand>AGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCCTATTTGGTATTTTGAACACTAATATTTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309277" ref_strand="+" ref_description="SGN-E309277 [cLEY-22-B13]">
      <seq>agagacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgctatttggtattttgaacactaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="5307" stop="3077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5009" g_stop="4748" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4747" i_stop="3653" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3652" g_stop="3377" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="538" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E309277" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5009" e_stop="4748"/>
          <exon e_start="3652" e_stop="3377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTT</genome_strand>
        <mrna_strand>AGAGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341807" ref_strand="+" ref_description="SGN-E341807 [cTOF-9-K12]">
      <seq>cgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcactgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttaggggtttcatcaaccagagttaagctctgtgcttagatgtaaacttgtttttccttcaacttatccctatttggtatttttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="5295" stop="3080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4996" g_stop="4748" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4747" i_stop="3653" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3652" g_stop="3391" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="516" r_length="265" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="531"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E341807" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4996" e_stop="4748"/>
          <exon e_start="3652" e_stop="3391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCA-TGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGAT-AAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTA-GGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTT-CTTCAACTTAT-GCTATTTGGTATTTT</genome_strand>
        <mrna_strand>CGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCACTGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGGTTTCATCAACCAGAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCCTTCAACTTATCCCTATTTGGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689281" ref_strand="+" ref_description="SGN-E689281 [t3_tus_80_O02]">
      <seq>agtttgtgtgtttactggttttgattttgaacccttcagttttgttttaataatgagtttttgtttcccggtgtctacccataattttctgtgtagagatttccctgatttacatttaatagtgtatcaagttgctacacaaaattgtgataaatagatcttttcttttttttaatgatttgggttgttacactttgttcatttgtgtaattggttttgtactttctgtaattatgggtaatgaaaaatcaaggttcttggaagtgttttgcaattttttttaaaaaaaaaatccttgaaaaaaatgcagtcaatggtaaattatgattcccaaatgatatctatgtcattctttgaacaatggaatctattgaggtaatggtttgatgtaaaatatgatgttagaagttttagcgggttagaattgtttaatcttgtttagtagatgcgtactgtgcatgttcgatgatggatgtgattgtttttatataagcaactgttaatagtattgtcgtattctgattttcgatggtgtaagaaactttaactcacaggcttctgatttgttgtcttttaaagttttaattgcaagagcttgtgaaagtgtataaggtttactatttgtttactagagctcttgaaccagaagcttaatattggaaagagatggaaaggtttttaagcatttatgagttctgaatttgattttcttcattggtacagctagtcgttgaaatgcttgtagatgtgatatatcactcaaaatcctaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="6243" stop="4870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5943" g_stop="5170" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E689281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5943" e_stop="5170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</genome_strand>
        <mrna_strand>AGTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325549" ref_strand="+" ref_description="SGN-E325549 [cTOC-15-C10]">
      <seq>gtttgtgtgtttactggttttgattttgaacccttcagttttgttttaataatgagtttttgtttcccggtgtctacccataattttctgtgtagagatttccctgatttacatttaatagtgtatcaagttgctacacaaaattgtgataaatagatcttttcttttttttaatgatttgggttgttacactttgttcatttgtgtaattggttttgtactttctgtaattatgggtaatgaaaaatcaaggttcttggaagtgttttgcaattttttttaaaaaaaaaatccttgaaaaaaatgcagtcaatggtaaattatgattcccaaatgatatctatgtcattctttgaacaatggaatctattgaggtaatggtttgatgtaaaatatgatgttagaagttttagcgggttagaattgtttaatcttgtttagtagatgcgtactgtgcatgttcgatgatggatgtgattgtttttatataagcaactgttaatagtattgtcgtattctgattttcgatggtgtaagaaactttaactcacaggcttctgattttgtgtcttttaagttttaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="6242" stop="5054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5942" g_stop="5354" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E325549" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5942" e_stop="5354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCA</genome_strand>
        <mrna_strand>GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTTGTGTCTTTT-AAGTTTTAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431511" ref_strand="-" ref_description="SGN-E431511 [STM-55-H21]">
      <seq>agcaagtcagagctgttggtaagacgagctctgcagcacctgatgcaaaatcgtactgtactagtgattgctcaccgcttggaaacagttttaatggctgaacgagttttccttttagatgatggatacttgcaggaggttcctcgctcctctcttttggacggtcaaagtggctcactggcatcgatgagtttaacaatatgatgtttatatgaagctaaaggtctctgcttcttggaaatgaatatgcatttgttgctctagtatggaagtatgtcctacaactttcttatccttccaatgtaagctgctcgtcacatcaaatgcccctttatatgaagctaaaggtctgtaaggtgctgtaaatttcttgaacaagtacttacagagtgatgtatatgattgtatatctttacatacgttagaaaatgcaatagaggcaatacaataatgtcgtttttttgcctcatctgttatagtggtaaatgatcaattgatttaagtggaaaaaaaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="8249" stop="6450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7949" g_stop="7893" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7892" i_stop="7199" i_length="694">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7198" g_stop="6751" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="504" r_length="447" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="517"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E431511" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431511" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7949" e_stop="7893"/>
          <exon e_start="7198" e_stop="6751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTCAGAGCTGTTGGTAAGACAAGCTCTGCAGCACCTGATGCAAAATCGTACTGTAAGTGAAAGAAGCTTCTATAGTTTTGTTTATAGTTCAGTACCATGGCTCCTCAACCTCTCCTGTCCCTCGTCATAATTATTTTTACCGAAGTTAAAATTCAGGTTCTCTCTGTTAACCATGATGTAGCATATGGAATGGAAATATATACGAATCTTACCTACCAAAAAGGAAGTACAAAAAAGCAAATGCCTATTCTGGTAAAGCGGGGTAAGTCTCACAGACACAGTAGATGAGTGATGAGGACGTAGGTTAACAGTCTCCACAAGATAGGGAACCTCGCAATACAACTGGTAGGGGGTAGTTATATGCACGTTTGGTACTGATTTACATGTTCTGTACCTTTATCATTATTGAATTATGTACCACATAGTAAAACTGTGGATACCCCTTAGACCTCACCCTGTTTGATTTCATTTTCTTCTGCATAATTTTTTTCACACGAATGAAAGAACTAAATTCTTGGCTTCTGGCAAACATTCTTACTGGGTGCTGTTGAAAACGTGCCTGAGATGTGAGAAAATCCGACTTTGTTGGCACTAGAAGTGTCTTAAGCCATCTTGATTTGAAGTTTGCTAATTGCTGACACATTTTATTGCCAAGAATATTTGACGATATCTTTCACATGCACACACACACTCACACACCTATCCTTCAGGGCAATTCTAATTATCGTCTAAATCTTTACATGCAGGTACTAGTGATTGCTCACCGCTTGGAAACAGTTTTAATGGCTGAACGAGTTTTCCTTTTAGAAGATGGATACTTGCAGGAGGTTCCTCGCGCCTCTCTTTTAGACAGTCGAAGTGGCTCACTGGCATCGATGAGTTTAACAATATGATGTTTATATGAAGCTAAAGG--TCTGCTTCTTGGAAATGAATATGCATTTGTTGCTCTAGTATGGAAGTATGTCCTACAACTTCCTTATCCTTCCCATGTAAGCTGCTCGTCGCGTCAAATGCCCCTTTATATGAAGCTAAAGGTCTGTAAAGTGTTGTAAACTGCTTGTACAAGTACTTACAGAGTGATGTATATCATTGAATATCTTTACATACGTTAGAAAATGCACCAGAGGCAACACAATAATGTTTTTTTTTTGGGCCTCGTATATTCTAGTGGTAAATGATCAATTGAATTTAAGT</genome_strand>
        <mrna_strand>AGCAAGTCAGAGCTGTTGGTAAGACGAGCTCTGCAGCACCTGATGCAAAATCGTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGTGATTGCTCACCGCTTGGAAACAGTTTTAATGGCTGAACGAGTTTTCCTTTTAGATGATGGATACTTGCAGGAGGTTCCTCGCTCCTCTCTTTTGGACGGTCAAAGTGGCTCACTGGCATCGATGAGTTTAACAATATGATGTTTATATGAAGCTAAAGGTCTCTGCTTCTTGGAAATGAATATGCATTTGTTGCTCTAGTATGGAAGTATGTCCTACAACTTTCTTATCCTTCCAATGTAAGCTGCTCGTCACATCAAATGCCCCTTTATATGAAGCTAAAGGTCTGTAAGGTGCTGTAAATTTCTTGAACAAGTACTTACAGAGTGATGTATATGATTGTATATCTTTACATACGTTAGAAAATGCAATAGAGGCAATACAATAATGTCGTTTTTTT--GCCTCATCTGTTATAGTGGTAAATGATCAATTG-ATTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464486" ref_strand="+" ref_description="SGN-E464486 [cPRO-18-K17]">
      <seq>ggcatacgaatcgagagtttaaggagaaacattggtttggtctctcaagatacaacattattttctggaagtgtcgccgagaacattggatatagggatagaatggctggtattgatatggagagagtgaagcttgctgccagaactgcaagtgcagaagaatttattgaagcgcttcctcttagctatgagacaaatgttggacctaggggctcaattttcagtggagggcagaagcaaagaatagctattgctcgggccctttatcaggatccatctattctaatattggatgaagctacttcagcattagacagcaagtcagagctgttggtaagacgagctctgcagcacctgatgcaaaatcgtactgtactagtgattgctcaccgcttggaaacagttttaatggctgaacgagttttccttttagatgatggatacttgcaggaggttcctcgctcctctcttttggacggtcaaagtggctcactggcatcgatgagtttaacaatatgatgtttatatgaagctaaaggtctctgcttcttggaaatgaatatgcatttgttgctctagtatggaagtatgtcctacaactttcttatccttccaatgtaagctgctcgtcacatcaaatgcccctttatatgaagctaaaggtctgtaaggtgctgtaaatttcttgaacaagtacttacagagtgatgtatatgattgtatatctttacatacgttagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="11083" stop="6528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10783" g_stop="10730" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10729" i_stop="8792" i_length="1938">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8791" g_stop="8604" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="242" r_length="188" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8603" i_stop="8023" i_length="581">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8022" g_stop="7893" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="372" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7892" i_stop="7199" i_length="694">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7198" g_stop="6828" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="745" r_length="373" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E464486" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10783" e_stop="10730"/>
          <exon e_start="8791" e_stop="8604"/>
          <exon e_start="8022" e_stop="7893"/>
          <exon e_start="7198" e_stop="6828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATACGAATCAAGAGTTTAAGGAGAAACATTGGCTTGGTCTCTCAAGATACAGTAAGTCCAAACCTCTTTCCCTCTTTACAACCATGATATGATGAATTCTTTTGCCTTAATTATTTCCACATACTGCTAACCTTTATTAGTGGTTAGTTGTTGTAGTGTTCAGGACTTTTGATGCTTATGCATTTCACTTTCAAATGGCAGACAGTAGTTGTGTTAAGTTTTCTCCATTTTCTTTTGTTAATGTGTATTATATTTGTTGGAGTTGGGGGTTGGGAATGGAGACTCATTACCTGGTGATTGTTTATACTCTACTTCTTTGCGTGATCCTCTTGTTACATTCCATAGAGCGGAGTATTTCACCTCAATCTACCATGTTCTATACAATCAAAAACTTCCATGTTCTAGAGGGCTAAGCTACATGATATTTAACCAGAATCACCTGGCAGTATGGGGTAAGCAGATGATTGATATTCTCGTTGTGGATGGCAAGAATTGGAGACATAAATTATGTTAGAGCCAATAGAGGTTCAATGATTAGTTTGTTGCTAAAACTGAGGTTTTTACACTATAAGGATCTAGTTGAAGGAGAGAAATTTTAGACAAATCGTCTAAAGATTCTCCAAAGCAACAATTTCCCATGGCTTTTTGACCCAAATTTGAATTTTGTACTGCAGTGTTTCAAAATTGGGGACTGTTTCCTCTTTTTAAGTTTTAGTCCTTGATTTTGCTCTAATATTTGTTTCATTTTCTTCTTTGTATCCGAGAAACATTAAGAAAAGTTACCACATTAAGTTTAGAAAATCTTCTTAGCGAAGGGAGTGCTTCCAGGTTCTTTACCAATGGATGTTCCTCAGGAACTAATTGGGCATTGTAAGGATTACCTATGTTTCCTAATTATTTTGATCCAGTCTATTTCTTGGATATCAATTGATAGAAAGTTGAAATTCTTTCTAAGTTTGTAGATATTTGGATATGTAAATGTGTAATAGTGAAAACACTACAGTCCAACATCGGATAAAATATAAATGTGCAATATACTTTGTGAAATCTGCTTATAAATACTATGTGAAAATATTGTTAGACAATTGACATTTTTCCAGCTTATTATTATTTTTACTGTTTTTACTTATTTTAGTTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCGCGGTCAGTGGCCCCCTTTTATGGTAGTTAGTAGCACATGTTTTATTTAGTTTTAATGTTTATGTTTTTTCCTTGTATAAATTCCGACTTTCTGCAGATTAATATACATAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAAATGTTTCCTACAATCTTACTTGATTAGCTATTAAGCATCTATTTTTGAATAATGGTACCTGTCCTTCTGATTGACCTCCTTATGTTTTGAGTCTATCTCAACTAAATTTACTTCCGTTTTGGCAAAGCTCCTCATCTCGAAAAAGTTGAACTAATACTTCCTCAACTTTTTCCATGTTTGTGCTCATGCCTCATAGACTAATATATAGTAGTTCCACTTATTTTAGGAAGCTTTTAGTTTTTCAGTTTCAAAAAAATAAATGCTTCCTAAAATAAGTGGAACTACTATATATTAGTTGGACTTCAAATTTTACATTTCAATTCAAAATACCTGTTCCTGAAAGTGGGGGGACATTGCTTTTATTATCTAGAAGTTAATTGAAACATTTCATTTAATATAAGTAGATTTTCTAGCAAAGAGATAGCATCTTGTTGAACCAACTGTCCGCTTTTCACACTTGGGTTGATACGTGATACTCTGTAATAATCTGGAGCTAACTCCTACGTTGTAAACACATTCCTTAAATTCACGCTAGCAAGGTCAACTGAAGTGGGAAATAGGAACTACACAGCTGAATTGTTTTCCAATTTTTTAAAAATTCTGTCAGACATTATTTTCTGGAAGTGTTGCCGAGAACATTGGATATAGGGATAGAATGGCTGGTATTGATATGGAGAGGGTGAAGCTTGCTGCCAGAAATGCAAGTGCGGAAGAATTTATTGAAGCGCTGCCTCTTAGCTATGAGACAAATGTTGGACCTAGGGGCTCAATTTTCAGTGGAGGGCAGAAGCAAAGGTATGATACTTTTCCCACCAATACCTTTGATTTTCTGAATTTTCTTATATATTTCTCACACACAATCAATCAGTAGTATGCCTAACTTTTTTTGAAAGAAAACTTTCCCCTCTTGAGAACGTCTTCTCAAACGAAAGGAGTAACAGAATCTCACACCAAGAAAGTTGTGTCAATCCAAAAATGGTAGGAAGAGAAGTCGATCTAATATTGACTAGTCCTTGATTCTCAGATTGACTGTGGTCTTCCTCTTCAGTTGATTTTCTCAACAGATTAATGTTTTTCCAAATTCATTTTGGGTCCCCTTTTCGTGTACTTCAGCTTCTTTGTTTTCATCAATTTTAATTGGATAATTCCTGTGGATCCAGGGTGTGTTTGAATTCATTCTCTCCTTATTTCTTCACTGAATTGAGATTATTCTCTACCTTCTCAAGGGATAGATATTTTGGGAATGCTATGGAACCTATACCAATGCTCTTGTTACCTTAAGGCTTACTGCAATTGTAAACATAGGGGCTGTCATAGGCATAGCTAACCTGTTTTGATCTAGGAAATTCTCTCATTCCTTTCTATTTTCATCTCAGAATAGCTATTGCTCGGGCTCTTTATCAGGATCCATCTATTCTAATATTGGATGAAGCTACTTCAGCATTAGACAGCAAGTCAGAGCTGTTGGTAAGACAAGCTCTGCAGCACCTGATGCAAAATCGTACTGTAAGTGAAAGAAGCTTCTATAGTTTTGTTTATAGTTCAGTACCATGGCTCCTCAACCTCTCCTGTCCCTCGTCATAATTATTTTTACCGAAGTTAAAATTCAGGTTCTCTCTGTTAACCATGATGTAGCATATGGAATGGAAATATATACGAATCTTACCTACCAAAAAGGAAGTACAAAAAAGCAAATGCCTATTCTGGTAAAGCGGGGTAAGTCTCACAGACACAGTAGATGAGTGATGAGGACGTAGGTTAACAGTCTCCACAAGATAGGGAACCTCGCAATACAACTGGTAGGGGGTAGTTATATGCACGTTTGGTACTGATTTACATGTTCTGTACCTTTATCATTATTGAATTATGTACCACATAGTAAAACTGTGGATACCCCTTAGACCTCACCCTGTTTGATTTCATTTTCTTCTGCATAATTTTTTTCACACGAATGAAAGAACTAAATTCTTGGCTTCTGGCAAACATTCTTACTGGGTGCTGTTGAAAACGTGCCTGAGATGTGAGAAAATCCGACTTTGTTGGCACTAGAAGTGTCTTAAGCCATCTTGATTTGAAGTTTGCTAATTGCTGACACATTTTATTGCCAAGAATATTTGACGATATCTTTCACATGCACACACACACTCACACACCTATCCTTCAGGGCAATTCTAATTATCGTCTAAATCTTTACATGCAGGTACTAGTGATTGCTCACCGCTTGGAAACAGTTTTAATGGCTGAACGAGTTTTCCTTTTAGAAGATGGATACTTGCAGGAGGTTCCTCGCGCCTCTCTTTTAGACAGTCGAAGTGGCTCACTGGCATCGATGAGTTTAACAATATGATGTTTATATGAAGCTAAAGG--TCTGCTTCTTGGAAATGAATATGCATTTGTTGCTCTAGTATGGAAGTATGTCCTACAACTTCCTTATCCTTCCCATGTAAGCTGCTCGTCGCGTCAAATGCCCCTTTATATGAAGCTAAAGGTCTGTAAAGTGTTGTAAACTGCTTGTACAAGTACTTACAGAGTGATGTATATCATTGAATATCTTTACATACGTTAGAAAAT</genome_strand>
        <mrna_strand>GGCATACGAATCGAGAGTTTAAGGAGAAACATTGGTTTGGTCTCTCAAGATACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATTTTCTGGAAGTGTCGCCGAGAACATTGGATATAGGGATAGAATGGCTGGTATTGATATGGAGAGAGTGAAGCTTGCTGCCAGAACTGCAAGTGCAGAAGAATTTATTGAAGCGCTTCCTCTTAGCTATGAGACAAATGTTGGACCTAGGGGCTCAATTTTCAGTGGAGGGCAGAAGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCTATTGCTCGGGCCCTTTATCAGGATCCATCTATTCTAATATTGGATGAAGCTACTTCAGCATTAGACAGCAAGTCAGAGCTGTTGGTAAGACGAGCTCTGCAGCACCTGATGCAAAATCGTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGTGATTGCTCACCGCTTGGAAACAGTTTTAATGGCTGAACGAGTTTTCCTTTTAGATGATGGATACTTGCAGGAGGTTCCTCGCTCCTCTCTTTTGGACGGTCAAAGTGGCTCACTGGCATCGATGAGTTTAACAATATGATGTTTATATGAAGCTAAAGGTCTCTGCTTCTTGGAAATGAATATGCATTTGTTGCTCTAGTATGGAAGTATGTCCTACAACTTTCTTATCCTTCCAATGTAAGCTGCTCGTCACATCAAATGCCCCTTTATATGAAGCTAAAGGTCTGTAAGGTGCTGTAAATTTCTTGAACAAGTACTTACAGAGTGATGTATATGATTGTATATCTTTACATACGTTAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431510" ref_strand="+" ref_description="SGN-E431510 [STM-55-H21]">
      <seq>ggcatacgaatcgagagtttaaggagaaacattggtttggtctctcaagatacaacattattttctggaagtgtcgccgagaacattggatatagggatagaatggctggtattgatatggagagagtgaagcttgctgccagaactgcaagtgcagaagaatttattgaagcgcttcctcttagctatgagacaaatgttggacctaggggctcaattttcagtggagggcagaagcaaagaatagctattgctcgggccctttatcaggatccatctattctaatattggatgaagctacttcagcattagacagcaagtcagagctgttggtaagacgagctctgcagcacctgatgcaaaatcgtactgtactagtgattgctcaccgcttggaaacagttttaatggctgaacgagttttccttttagatgatggatacttgcaggaggttcctcgctcctctcttttggacggtcaaagtggctcactggcatcgatgagtttaacaatatgatgtttatatgaagctaaaggtctctgcttcttggaaatgaatatgcatttgttgctctagtatggaagtatgtcctacaactttcttatccttccnnatgtagctgctcgtcacatcaaatgcccctttatatgaagctaaaggtctgtaaggtgctgtaaatttcttgaacagtactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="11083" stop="6573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10783" g_stop="10730" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10729" i_stop="8792" i_length="1938">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8791" g_stop="8604" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="242" r_length="188" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8603" i_stop="8023" i_length="581">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8022" g_stop="7893" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="372" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7892" i_stop="7199" i_length="694">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7198" g_stop="6873" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="699" r_length="327" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E431510" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10783" e_stop="10730"/>
          <exon e_start="8791" e_stop="8604"/>
          <exon e_start="8022" e_stop="7893"/>
          <exon e_start="7198" e_stop="6873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATACGAATCAAGAGTTTAAGGAGAAACATTGGCTTGGTCTCTCAAGATACAGTAAGTCCAAACCTCTTTCCCTCTTTACAACCATGATATGATGAATTCTTTTGCCTTAATTATTTCCACATACTGCTAACCTTTATTAGTGGTTAGTTGTTGTAGTGTTCAGGACTTTTGATGCTTATGCATTTCACTTTCAAATGGCAGACAGTAGTTGTGTTAAGTTTTCTCCATTTTCTTTTGTTAATGTGTATTATATTTGTTGGAGTTGGGGGTTGGGAATGGAGACTCATTACCTGGTGATTGTTTATACTCTACTTCTTTGCGTGATCCTCTTGTTACATTCCATAGAGCGGAGTATTTCACCTCAATCTACCATGTTCTATACAATCAAAAACTTCCATGTTCTAGAGGGCTAAGCTACATGATATTTAACCAGAATCACCTGGCAGTATGGGGTAAGCAGATGATTGATATTCTCGTTGTGGATGGCAAGAATTGGAGACATAAATTATGTTAGAGCCAATAGAGGTTCAATGATTAGTTTGTTGCTAAAACTGAGGTTTTTACACTATAAGGATCTAGTTGAAGGAGAGAAATTTTAGACAAATCGTCTAAAGATTCTCCAAAGCAACAATTTCCCATGGCTTTTTGACCCAAATTTGAATTTTGTACTGCAGTGTTTCAAAATTGGGGACTGTTTCCTCTTTTTAAGTTTTAGTCCTTGATTTTGCTCTAATATTTGTTTCATTTTCTTCTTTGTATCCGAGAAACATTAAGAAAAGTTACCACATTAAGTTTAGAAAATCTTCTTAGCGAAGGGAGTGCTTCCAGGTTCTTTACCAATGGATGTTCCTCAGGAACTAATTGGGCATTGTAAGGATTACCTATGTTTCCTAATTATTTTGATCCAGTCTATTTCTTGGATATCAATTGATAGAAAGTTGAAATTCTTTCTAAGTTTGTAGATATTTGGATATGTAAATGTGTAATAGTGAAAACACTACAGTCCAACATCGGATAAAATATAAATGTGCAATATACTTTGTGAAATCTGCTTATAAATACTATGTGAAAATATTGTTAGACAATTGACATTTTTCCAGCTTATTATTATTTTTACTGTTTTTACTTATTTTAGTTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCGCGGTCAGTGGCCCCCTTTTATGGTAGTTAGTAGCACATGTTTTATTTAGTTTTAATGTTTATGTTTTTTCCTTGTATAAATTCCGACTTTCTGCAGATTAATATACATAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAAATGTTTCCTACAATCTTACTTGATTAGCTATTAAGCATCTATTTTTGAATAATGGTACCTGTCCTTCTGATTGACCTCCTTATGTTTTGAGTCTATCTCAACTAAATTTACTTCCGTTTTGGCAAAGCTCCTCATCTCGAAAAAGTTGAACTAATACTTCCTCAACTTTTTCCATGTTTGTGCTCATGCCTCATAGACTAATATATAGTAGTTCCACTTATTTTAGGAAGCTTTTAGTTTTTCAGTTTCAAAAAAATAAATGCTTCCTAAAATAAGTGGAACTACTATATATTAGTTGGACTTCAAATTTTACATTTCAATTCAAAATACCTGTTCCTGAAAGTGGGGGGACATTGCTTTTATTATCTAGAAGTTAATTGAAACATTTCATTTAATATAAGTAGATTTTCTAGCAAAGAGATAGCATCTTGTTGAACCAACTGTCCGCTTTTCACACTTGGGTTGATACGTGATACTCTGTAATAATCTGGAGCTAACTCCTACGTTGTAAACACATTCCTTAAATTCACGCTAGCAAGGTCAACTGAAGTGGGAAATAGGAACTACACAGCTGAATTGTTTTCCAATTTTTTAAAAATTCTGTCAGACATTATTTTCTGGAAGTGTTGCCGAGAACATTGGATATAGGGATAGAATGGCTGGTATTGATATGGAGAGGGTGAAGCTTGCTGCCAGAAATGCAAGTGCGGAAGAATTTATTGAAGCGCTGCCTCTTAGCTATGAGACAAATGTTGGACCTAGGGGCTCAATTTTCAGTGGAGGGCAGAAGCAAAGGTATGATACTTTTCCCACCAATACCTTTGATTTTCTGAATTTTCTTATATATTTCTCACACACAATCAATCAGTAGTATGCCTAACTTTTTTTGAAAGAAAACTTTCCCCTCTTGAGAACGTCTTCTCAAACGAAAGGAGTAACAGAATCTCACACCAAGAAAGTTGTGTCAATCCAAAAATGGTAGGAAGAGAAGTCGATCTAATATTGACTAGTCCTTGATTCTCAGATTGACTGTGGTCTTCCTCTTCAGTTGATTTTCTCAACAGATTAATGTTTTTCCAAATTCATTTTGGGTCCCCTTTTCGTGTACTTCAGCTTCTTTGTTTTCATCAATTTTAATTGGATAATTCCTGTGGATCCAGGGTGTGTTTGAATTCATTCTCTCCTTATTTCTTCACTGAATTGAGATTATTCTCTACCTTCTCAAGGGATAGATATTTTGGGAATGCTATGGAACCTATACCAATGCTCTTGTTACCTTAAGGCTTACTGCAATTGTAAACATAGGGGCTGTCATAGGCATAGCTAACCTGTTTTGATCTAGGAAATTCTCTCATTCCTTTCTATTTTCATCTCAGAATAGCTATTGCTCGGGCTCTTTATCAGGATCCATCTATTCTAATATTGGATGAAGCTACTTCAGCATTAGACAGCAAGTCAGAGCTGTTGGTAAGACAAGCTCTGCAGCACCTGATGCAAAATCGTACTGTAAGTGAAAGAAGCTTCTATAGTTTTGTTTATAGTTCAGTACCATGGCTCCTCAACCTCTCCTGTCCCTCGTCATAATTATTTTTACCGAAGTTAAAATTCAGGTTCTCTCTGTTAACCATGATGTAGCATATGGAATGGAAATATATACGAATCTTACCTACCAAAAAGGAAGTACAAAAAAGCAAATGCCTATTCTGGTAAAGCGGGGTAAGTCTCACAGACACAGTAGATGAGTGATGAGGACGTAGGTTAACAGTCTCCACAAGATAGGGAACCTCGCAATACAACTGGTAGGGGGTAGTTATATGCACGTTTGGTACTGATTTACATGTTCTGTACCTTTATCATTATTGAATTATGTACCACATAGTAAAACTGTGGATACCCCTTAGACCTCACCCTGTTTGATTTCATTTTCTTCTGCATAATTTTTTTCACACGAATGAAAGAACTAAATTCTTGGCTTCTGGCAAACATTCTTACTGGGTGCTGTTGAAAACGTGCCTGAGATGTGAGAAAATCCGACTTTGTTGGCACTAGAAGTGTCTTAAGCCATCTTGATTTGAAGTTTGCTAATTGCTGACACATTTTATTGCCAAGAATATTTGACGATATCTTTCACATGCACACACACACTCACACACCTATCCTTCAGGGCAATTCTAATTATCGTCTAAATCTTTACATGCAGGTACTAGTGATTGCTCACCGCTTGGAAACAGTTTTAATGGCTGAACGAGTTTTCCTTTTAGAAGATGGATACTTGCAGGAGGTTCCTCGCGCCTCTCTTTTAGACAGTCGAAGTGGCTCACTGGCATCGATGAGTTTAACAATATGATGTTTATATGAAGCTAAAGG--TCTGCTTCTTGGAAATGAATATGCATTTGTTGCTCTAGTATGGAAGTATGTCCTACAACTTCCTTATCCTTCC-CATGTAAGCTGCTCGTCGCGTCAAATGCCCCTTTATATGAAGCTAAAGGTCTGTAAAGTGTTGTAAACTGCTTGTACAAGTACTTA</genome_strand>
        <mrna_strand>GGCATACGAATCGAGAGTTTAAGGAGAAACATTGGTTTGGTCTCTCAAGATACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATTTTCTGGAAGTGTCGCCGAGAACATTGGATATAGGGATAGAATGGCTGGTATTGATATGGAGAGAGTGAAGCTTGCTGCCAGAACTGCAAGTGCAGAAGAATTTATTGAAGCGCTTCCTCTTAGCTATGAGACAAATGTTGGACCTAGGGGCTCAATTTTCAGTGGAGGGCAGAAGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCTATTGCTCGGGCCCTTTATCAGGATCCATCTATTCTAATATTGGATGAAGCTACTTCAGCATTAGACAGCAAGTCAGAGCTGTTGGTAAGACGAGCTCTGCAGCACCTGATGCAAAATCGTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGTGATTGCTCACCGCTTGGAAACAGTTTTAATGGCTGAACGAGTTTTCCTTTTAGATGATGGATACTTGCAGGAGGTTCCTCGCTCCTCTCTTTTGGACGGTCAAAGTGGCTCACTGGCATCGATGAGTTTAACAATATGATGTTTATATGAAGCTAAAGGTCTCTGCTTCTTGGAAATGAATATGCATTTGTTGCTCTAGTATGGAAGTATGTCCTACAACTTTCTTATCCTTCCNNATGT-AGCTGCTCGTCACATCAAATGCCCCTTTATATGAAGCTAAAGGTCTGTAAGGTGCTGTAAATTTCTTGAAC-AGTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419429" ref_strand="+" ref_description="SGN-E419429 [STM-29-J1]">
      <seq>caaaatccgagtgtatggatgttaagggaccaaaaccgcaaatacctaaattaaccaccgggaaatgtccctaattcacctgaaaccgccgtatcacggccgttcgccgccccttcgccgccacaaactcacagtcccccgccaggtaaccaaaccaattactaacatcatcttcaatttctccatttccacctctgccttaacaataaaatcatcatctacacgcgccgctgcgaactccggcaagttcatttctccgttcacctctttagctcctcttaaaccttatctcctttcggaatggaaaccgattctctgtggatggctctgcagtgttttatctgtttactctctgtccaaaattgttcccaaagttggaaaattctcgtctctcatgaatgcgttggatgttgtgaggctgagagaggagtgtttggttttgggaggtttgtttttcgttcgactcgttggtaattatctgcagcaagcgtttctatgggaagctgcgttgaattgtgtgtataagatgagggtttgtgttttccataaggttttgcagagagatttanggttctttgagggagaaaatgggattgctgctggagatgttgcttataggattactgcctgagcttctgatgttgctgatactgtttattctctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="16186" stop="14920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15886" g_stop="15220" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E419429" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15886" e_stop="15220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTAGAGTGGATGGATGTTAAGGGACCAAAAACGTAAATACCTAAATTAATCACCGGGAAATGTCCGTAATTCACCTGAAACTGCCGTCTCACGGCCGTTCGCCGTCCCTTCGCCACCACAAACTCACAGTCCCCCGCCAGGTAACCAAACCAATCACTAACATCATCTTCAATTTCTCCATTTCCACCTCTGCCTTAAAAGTAAAATCATCATCTACACGCGCCGCTGCGAACTCCGGCAAGTTCATTTCTCCGTTCACCTCTATAGCTCCTCTTAAACCTTATCTCCTTTCGGAATGGAAATCTATTCTCTGTGGATGGCTCTGTAGTGTAATATCTGTTTACTCTCTGTCCAAAATTGTTCCCAAAGTGGGAAAATTCTCGTCTCTCATGAATCCGTTGGATGTTGTGAGGCTGAGAGAGGAGTGTTTGGTTTTGGGAGGTTTGTTTTTCGTTCGACTCGTTGGTAATTATCTGCAACAAGCGTTTCTATGGGAAGCTGCGTTGAATTGCGTGTATAAGATGAGGATTTGTGTTTTCCATAAGGTTTTGCAGAGAGATTTAGGATTTTTTGAGGGAGAAAAAGGGATTGCTGCTGGAGATGTTGCTTATAGGATTACTGCTGAAGCTTCTGATGTTGCTGATACTGTTTATTCTCTCTTG</genome_strand>
        <mrna_strand>CAAAATCCGAGTGTATGGATGTTAAGGGACCAAAACCGCAAATACCTAAATTAACCACCGGGAAATGTCCCTAATTCACCTGAAACCGCCGTATCACGGCCGTTCGCCGCCCCTTCGCCGCCACAAACTCACAGTCCCCCGCCAGGTAACCAAACCAATTACTAACATCATCTTCAATTTCTCCATTTCCACCTCTGCCTTAACAATAAAATCATCATCTACACGCGCCGCTGCGAACTCCGGCAAGTTCATTTCTCCGTTCACCTCTTTAGCTCCTCTTAAACCTTATCTCCTTTCGGAATGGAAACCGATTCTCTGTGGATGGCTCTGCAGTGTTTTATCTGTTTACTCTCTGTCCAAAATTGTTCCCAAAGTTGGAAAATTCTCGTCTCTCATGAATGCGTTGGATGTTGTGAGGCTGAGAGAGGAGTGTTTGGTTTTGGGAGGTTTGTTTTTCGTTCGACTCGTTGGTAATTATCTGCAGCAAGCGTTTCTATGGGAAGCTGCGTTGAATTGTGTGTATAAGATGAGGGTTTGTGTTTTCCATAAGGTTTTGCAGAGAGATTTANGGTTCTTTGAGGGAGAAAATGGGATTGCTGCTGGAGATGTTGCTTATAGGATTACTGCCTGAGCTTCTGATGTTGCTGATACTGTTTATTCTCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442080" ref_strand="+" ref_description="SGN-E442080 [cSTA-31-L22]">
      <seq>caaaatccgagtgtatggatgttaagggaccaaaaccgcaaatacctaaattaaccaccgggaaatgtccctaattcacctgaaaccgccgtatcacggccgttcgccgccccttcgccgccacaaactcacagtcccccgccaggtaaccaaaccaattactaacatcatcttcaatttctccatttccacctctgccttaacaataaaatcatcatctacacgcgccgctgcgaactccggcaagttcatttctccgttcacctctttagctcctcttaaaccttatctcctttcggaatggaaaccgattctctgtggatggctctgcagtgttttatctgtttactctctgtccaaaattgttcccaaagttggaaaattctcgtctctcatgaatccgttggatgttgtgaggctgagagaggagtgtttggttttgggaggtttgtttttcgttcgactcgttggtaattatctgcagcaagcgtttctatgggaagctgcgttgaattgtgtgtataagatgagggtttgtgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="16186" stop="15044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15886" g_stop="15344" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E442080" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15886" e_stop="15344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTAGAGTGGATGGATGTTAAGGGACCAAAAACGTAAATACCTAAATTAATCACCGGGAAATGTCCGTAATTCACCTGAAACTGCCGTCTCACGGCCGTTCGCCGTCCCTTCGCCACCACAAACTCACAGTCCCCCGCCAGGTAACCAAACCAATCACTAACATCATCTTCAATTTCTCCATTTCCACCTCTGCCTTAAAAGTAAAATCATCATCTACACGCGCCGCTGCGAACTCCGGCAAGTTCATTTCTCCGTTCACCTCTATAGCTCCTCTTAAACCTTATCTCCTTTCGGAATGGAAATCTATTCTCTGTGGATGGCTCTGTAGTGTAATATCTGTTTACTCTCTGTCCAAAATTGTTCCCAAAGTGGGAAAATTCTCGTCTCTCATGAATCCGTTGGATGTTGTGAGGCTGAGAGAGGAGTGTTTGGTTTTGGGAGGTTTGTTTTTCGTTCGACTCGTTGGTAATTATCTGCAACAAGCGTTTCTATGGGAAGCTGCGTTGAATTGCGTGTATAAGATGAGGATTTGTGTTTT</genome_strand>
        <mrna_strand>CAAAATCCGAGTGTATGGATGTTAAGGGACCAAAACCGCAAATACCTAAATTAACCACCGGGAAATGTCCCTAATTCACCTGAAACCGCCGTATCACGGCCGTTCGCCGCCCCTTCGCCGCCACAAACTCACAGTCCCCCGCCAGGTAACCAAACCAATTACTAACATCATCTTCAATTTCTCCATTTCCACCTCTGCCTTAACAATAAAATCATCATCTACACGCGCCGCTGCGAACTCCGGCAAGTTCATTTCTCCGTTCACCTCTTTAGCTCCTCTTAAACCTTATCTCCTTTCGGAATGGAAACCGATTCTCTGTGGATGGCTCTGCAGTGTTTTATCTGTTTACTCTCTGTCCAAAATTGTTCCCAAAGTTGGAAAATTCTCGTCTCTCATGAATCCGTTGGATGTTGTGAGGCTGAGAGAGGAGTGTTTGGTTTTGGGAGGTTTGTTTTTCGTTCGACTCGTTGGTAATTATCTGCAGCAAGCGTTTCTATGGGAAGCTGCGTTGAATTGTGTGTATAAGATGAGGGTTTGTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443437" ref_strand="+" ref_description="SGN-E443437 [cSTA-37-L12]">
      <seq>cgaggcaaaatccgagtgtatggatgttaagggaccaaaaccgcaaataccctaaattaaccaccgggaaatgtccctaattcacctgaaaccgccgtatcacggccgttcgccgccccttcgccgccacaaactcacagtcccccgccaggtaaccaaaccaattactaacatcatcttcaatttctccatttccacctctgccttaacaataaaatcatcatctacacgcgccgctgcgaactccggcaagttcatttctccgttcacctctttagctcctcttaaaccttatctcctttcggaatggaaaccgattctctgtggatggctctgcagtgttttatctgtttactctctgtccaaaattgttcccaaagttggaaaattctcgtctctcatgaatccgttggatgttgtgaggctgagagaggagtgtttggttttgggaggtttgtttttcgttcgactcgttggtaattatctgcagcaagcgtttctatgggaagctgcgttgaattgtgtgtataagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="16186" stop="15058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15891" g_stop="15358" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E443437" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15891" e_stop="15358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCAAAATTAGAGTGGATGGATGTTAAGGGACCAAAAACGTAAATA-CCTAAATTAATCACCGGGAAATGTCCGTAATTCACCTGAAACTGCCGTCTCACGGCCGTTCGCCGTCCCTTCGCCACCACAAACTCACAGTCCCCCGCCAGGTAACCAAACCAATCACTAACATCATCTTCAATTTCTCCATTTCCACCTCTGCCTTAAAAGTAAAATCATCATCTACACGCGCCGCTGCGAACTCCGGCAAGTTCATTTCTCCGTTCACCTCTATAGCTCCTCTTAAACCTTATCTCCTTTCGGAATGGAAATCTATTCTCTGTGGATGGCTCTGTAGTGTAATATCTGTTTACTCTCTGTCCAAAATTGTTCCCAAAGTGGGAAAATTCTCGTCTCTCATGAATCCGTTGGATGTTGTGAGGCTGAGAGAGGAGTGTTTGGTTTTGGGAGGTTTGTTTTTCGTTCGACTCGTTGGTAATTATCTGCAACAAGCGTTTCTATGGGAAGCTGCGTTGAATTGCGTGTATAAGATG</genome_strand>
        <mrna_strand>CGAGGCAAAATCCGAGTGTATGGATGTTAAGGGACCAAAACCGCAAATACCCTAAATTAACCACCGGGAAATGTCCCTAATTCACCTGAAACCGCCGTATCACGGCCGTTCGCCGCCCCTTCGCCGCCACAAACTCACAGTCCCCCGCCAGGTAACCAAACCAATTACTAACATCATCTTCAATTTCTCCATTTCCACCTCTGCCTTAACAATAAAATCATCATCTACACGCGCCGCTGCGAACTCCGGCAAGTTCATTTCTCCGTTCACCTCTTTAGCTCCTCTTAAACCTTATCTCCTTTCGGAATGGAAACCGATTCTCTGTGGATGGCTCTGCAGTGTTTTATCTGTTTACTCTCTGTCCAAAATTGTTCCCAAAGTTGGAAAATTCTCGTCTCTCATGAATCCGTTGGATGTTGTGAGGCTGAGAGAGGAGTGTTTGGTTTTGGGAGGTTTGTTTTTCGTTCGACTCGTTGGTAATTATCTGCAGCAAGCGTTTCTATGGGAAGCTGCGTTGAATTGTGTGTATAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213783" ref_strand="+" ref_description="SGN-E213783 [cLEC-76-M5]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="15749" stop="16640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16049" g_stop="16340" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E213783" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16049" e_stop="16340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207313" ref_strand="+" ref_description="SGN-E207313 [cLEC-30-L1]">
      <seq>gcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaagtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgccggctaagggcgttgacaagacaacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="15750" stop="16524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16050" g_stop="16224" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E207313" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16050" e_stop="16224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGAC</genome_strand>
        <mrna_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAAGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCCGGCTAAGGGCGTTGACAAGACAACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745616" ref_strand="+" ref_description="SGN-E745616 [GI|47105254]">
      <seq>gaatgattactgattagccttttagaagatcggaaaaccctaaaaatggctgatcgagctctctgttcactctcatttgactgataaatctgcggatgcgaggtaatctcactatatatttgtaatcagtactgttttctgcttttaaatccttcaaaaaatggatgatttgatgcaaaaatcactgaaaacccccgattttttagctgtatttactaacagtacaagtgaaggaattgatagaattagctatttgccggatgatatactgcacaatatactttcatatctgtacatctttgatgttgttcagctaagcattttatcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaaaggattgataggctttgggatatgggtatggctgagaaattcaaagattttatcaattgggtgttgattaaccgatgtggggatagccttgtttgttttaagctttgttgtggggatatttttggtaaaagggctatttttcgatgggttcgtgttgtgacagctcgaaatgttcaagaactcgtgttagatttttgtcctgctgagccatttgagttgccatattgtgttgtgacttgtgaatccttgcgagttttgaaattacggcttgatgggtctgtacttaagttgtctaatcattttggatttcatcagcttaaatttcttcatcttgaaaaagttgagttatcaaacgagcatttgacgagttgcttgttctcaagactagagaaactggtattggatggttgtacttttggaactatgactatgcttgatattgtttcaacgtctctggtttatgtgtctctactgaactatgtcaataacgtagaagcttacaacaattgtatcgtcaagatttcttgcccgaatctcaaggtcttgaaatatggtgctccattggcaaaggatatgatcatagagaatctcttgtctatagaagttgttcacatcttatttttttattcagacgatgtaataaaagaaattggaatgcgtttgcataaggtgttcaagaatgtcgcttctacatcagctttgaaattatgcaaaggttctgttgttggtttgtatagtgtatttcatggagtaagaaacttcccggtcacgttttataagctcaagtccttaaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaaagcgttttgtgcctggagtctcatctaaagttgattcagttggctggtttcaaaaatgaagataaagagatagagctactgaggtttttcctcaagaatgcacaagtattagaagaactgataattgtttgggatagctgtagtggcatatcagaagaggcaatagaggaggtttccaactttcctagagcttcttcacatgttgttgtctcatttcttaatttcaaacccaaatcaagatctcgttaccgggacaattcagtttaaaagaggttctgattgtgagacgctatgttgcttggacttggactctccaaaaatgttgtactacttttggaaggtccgacatacatttgaagtgtccaagtaacataggttagaagtaccctttttgggaactagtgcatgagcaagcacatgaagccttaacgaatttctactactgtttcgccttttcaaagagcactggacagacttcaatgaagcatatttgactccggacaaagaagcattcaacttgtcgacagatgttacatgcgtatacaagatttaggaagtatcagtcatctctttctgcactatatggttgttgttgacctctgaaacgtgttttattatgttttcggactcgcgtaggtcatgccatacacagttaaagatgcatatgaatgctttaatcatgaagaagatctggatgtccctgcaagtattgatgtttttggtgtatttcaactccaaattactcctcccaactataagctagatgtttgtgtaacttatttaggttgatgaacaacttaagtcatgtaaattacttgatctcttttgtaacttttgcatcttcatgatgtttttctcaataaaacttacttatttcatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="19862" stop="17043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19563" g_stop="17335" g_length="2229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2229" r_length="2229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E745616" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19563" e_stop="17335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGATACT</genome_strand>
        <mrna_strand>GAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397827" ref_strand="+" ref_description="SGN-E397827 [TUS-24-L21](-)">
      <seq>gttaaagaggggtatgaatgctttaatcgtgaggaagatttggatgtccctgcaagtattgatgtttttggtgtatttcaactccaaattactcctcccaactataagctagatgtttgtgtaacttatttaggttgatgaacaacttaagtcatgtaaattacttgatctcttttgtaacttttgcatcttcatgatgtttttctcaataaaacttacttatttcatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="17879" stop="17043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17579" g_stop="17338" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E397827" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17579" e_stop="17338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGAT</genome_strand>
        <mrna_strand>GTTAAAGAGGGGTATGAATGCTTTAATCGTGAGGAAGATTTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244981" ref_strand="+" ref_description="SGN-E244981 [cLEF-2-J11]">
      <seq>taaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaaagcgttttgtgcctggagtctcatctaaagttgattcagttggctggtttcaaaaatgaagataaagagatagagctactgaggtttttcctcaagaatgcacaagtattagaagaactgataattgtttgggatagctgtagtggcatatcagaagaggcaatagaggaggtttccaactttcctagagcttcttcacatgttgttgtctcatttcttaatttcaaacccaaatcaagatctcgttaccgggacaattcagtttaaaagaggttctgattgtgagacgctatgttgcttggacttggactcttcaaaaatgttgtactacttttggaaggtccgacatacatttgaagtgtccaagtaacataggttagaagtaccctttttgggaactagtgcatgaacaagcacatgaagccttaacgaatttctactactgtttcgccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="18676" stop="17475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18376" g_stop="17774" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E244981" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18376" e_stop="17774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTC</genome_strand>
        <mrna_strand>TAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTTCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAACAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254305" ref_strand="+" ref_description="SGN-E254305 [cLEG-27-N23]">
      <seq>tggcaaaggatatgatcatagagaatctcttgtctatagaagttgttcacatcttatttttttattcagacgatgtaataaaagaaattggaatgcgtttgcataaggtgttcaagaatgtcgcttctacatcagctttgaaattatgcaaaggttctgttgttggtttgtatagtgtatttcatggagtaagaaacttcccggtcacgttttataagctcaagtccttaaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaaagcgttttgtgcctggagtctcatctaaagttgattcagttggctggtttcaaaaatgaagataaagagatagagctactgaggtttttcctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="18904" stop="17835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18604" g_stop="18135" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E254305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18604" e_stop="18135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAG</genome_strand>
        <mrna_strand>TGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239931" ref_strand="+" ref_description="SGN-E239931 [cLED-29-I20]">
      <seq>gaatctcttgtctatagaagttgttcacatcttatttttttattcagacgatgtaataaaagaaattggaatgcgtttgcataaggtgttcaagaatgtcgcttctacatcagctttgaaattatgcaaaggttctgttgatggtttgtatagtgtatttcatggagtaagaaacttcccggtcacgttttataagctcaagtccttaaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="18882" stop="17931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18582" g_stop="18231" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E239931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18582" e_stop="18231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAA</genome_strand>
        <mrna_strand>GAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGATGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434533" ref_strand="+" ref_description="SGN-E434533 [STM-60-G7]">
      <seq>gttcgactgataaatctgcggatgcaaggtaatctcactatacatttgaaatcagtactgttttctgcttttaaatccttcaaaaaatggatgatttgatgcaaaaatcattgaaaccccccaattttttagctgtatttattaacagtacaagtgaaggaatcgatagaattagctatttgccggatgatatattgcacaatatactttcatatctctacatcttcgatgttgttcagctaagcattttgtcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaacggattaataggccttgggatttgggtatggctgagaaattcaaagattttatcaattgggtgtttattaaccaatgtgaggatacccttgtttgttttaagctttgttgtggggatatttttggtaaaggggctatttttcgatgggttcgtgttgtgacaactcgaaatgttcaagaacttgtgttaaatttttgtcctgctgggccatttgagttgccatattgtgttgtgacttgtgaatctttgcgagttttgaaaatacggatggatgggtctgtacttaagttgcctaatcatttcggatttcatcagcttaaatttcttcatcttgaagaagttgagttatcaaacgagcatttgacgagttgcttgttctcaagactagaaaactgaaattggattgttgtaatttctggactatgactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="19788" stop="18435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19489" g_stop="18735" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E434533" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19489" e_stop="18735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATG</genome_strand>
        <mrna_strand>GTTCGACTGATAAATCTGCGGATGCAAGGTAATCTCACTATACATTTGAAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCATTGAAACCCCCCAATTTTTTAGCTGTATTTATTAACAGTACAAGTGAAGGAATCGATAGAATTAGCTATTTGCCGGATGATATATTGCACAATATACTTTCATATCTCTACATCTTCGATGTTGTTCAGCTAAGCATTTTGTCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAACGGATTAATAGGCCTTGGGATTTGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTTATTAACCAATGTGAGGATACCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAGGGGCTATTTTTCGATGGGTTCGTGTTGTGACAACTCGAAATGTTCAAGAACTTGTGTTAAATTTTTGTCCTGCTGGGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCTTTGCGAGTTTTGAAAATACGGATGGATGGGTCTGTACTTAAGTTGCCTAATCATTTCGGATTTCATCAGCTTAAATTTCTTCATCTTGAAGAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGA-AAACTGAAATTGGATTGTTGTAATTTCTGGACTATGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391824" ref_strand="+" ref_description="SGN-E391824 [TUS-24-L21]">
      <seq>atttgccggatgatatactgcacaatatactttcatatctgtacatctttgatgttgttcagctaagcattttatcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaaaggattgataggctttgggatatgggtatggctgagaaattcaaagattttatcaattgggtgttgattaaccgatgtggggatagccttgtttgttttaagctttgttgtggggatatttttggtaaaagggctatttttcgatgggttcgtgttgtgacagctcgaaatgttcaagaactcgtgttagatttttgtcctgctgagccatttgagttgccatattgtgttgtgacttgtgaatccttgcgagttttgaaattacggcttgatgggtctgtacttaagttgtctaatcattttggatttcatcagcttaaatttcttcatcatgaaaaagttgagttatcaaacgagcatttgacgagttgcttgttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="19612" stop="18486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19312" g_stop="18786" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E391824" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19312" e_stop="18786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCA</genome_strand>
        <mrna_strand>ATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCATGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410180" ref_strand="+" ref_description="SGN-E410180 [PPI-16-C22]">
      <seq>gttcgactgataaatctgcggatgcaaggtaatctcactatacatttgaaatcagtactgttttctgcttttaaatccttcaaaaaatggatgatttgatgcaaaaatcattgaaaccccccaattttttagctgtatttattaacagtacaagtgaaggaatcgatagaattagctatttgccggatgatatattgcacaatatactttcatatctctacatcttcgatgttgttcagctaagcattttgtcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaacggattaataggccttgggatttgggtatggctgagaaattcaaagattttatcaattgggtgtttattaaccaatgtgaggatacccttgtttgttttaagctttgttgtggggatatttttggtaaaggggctatttttcgatgggttcgtgttgtgacaactcgaaatgttcaagaacttgtgttaaatttttgtcctgctgggccatttgagttgccatattgtgttgtgacttgtgaatctttgcgagttttgaaaatacggatggatgggtctgtacttaagttgcctaatcatttcggatttcatcagcttaaatttcttcatctttgagaaaagtgagtatcaaacgagcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="19788" stop="18503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19489" g_stop="18803" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E410180" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19489" e_stop="18803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATC-TTGAAAAAGTTGAGTTATCAAACGAGCATTTGA</genome_strand>
        <mrna_strand>GTTCGACTGATAAATCTGCGGATGCAAGGTAATCTCACTATACATTTGAAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCATTGAAACCCCCCAATTTTTTAGCTGTATTTATTAACAGTACAAGTGAAGGAATCGATAGAATTAGCTATTTGCCGGATGATATATTGCACAATATACTTTCATATCTCTACATCTTCGATGTTGTTCAGCTAAGCATTTTGTCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAACGGATTAATAGGCCTTGGGATTTGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTTATTAACCAATGTGAGGATACCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAGGGGCTATTTTTCGATGGGTTCGTGTTGTGACAACTCGAAATGTTCAAGAACTTGTGTTAAATTTTTGTCCTGCTGGGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCTTTGCGAGTTTTGAAAATACGGATGGATGGGTCTGTACTTAAGTTGCCTAATCATTTCGGATTTCATCAGCTTAAATTTCTTCATCTTTGAGAAAAGTGAG-TATCAAACGAGCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246727" ref_strand="+" ref_description="SGN-E246727 [cLEF-45-H3]">
      <seq>ttgccggatgatatactgcacaatatactttcatatctgtacatctttgatgttgttcagctaagcattttatcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaaaggattgataggctttgggatatgggtatggctgagaaattcaaagattttatcaattgggtgttgattaaccgatgtggggatagccttgtttgttttaagctttgttgtggggatatttttggtaaaagggctatttttcgatgggttcgtgttgtgacagctcgaaatgttcaagaactcgtgttagatttttgtcctgctgagccatttgagttgccatattgtgttgtgacttgtgaatccttgcgagttttgaaattacggcttgatgggtctgtacttaagttgtctaatcattttggatttcatcagcttaaatttcttcatcttgaaaaagttgagttatcaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="19610" stop="18512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19310" g_stop="18812" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E246727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19310" e_stop="18812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACG</genome_strand>
        <mrna_strand>TTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342207" ref_strand="+" ref_description="SGN-E342207 [cTOF-10-J24]">
      <seq>gggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaccaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggggccaagaactgaagtataagactagtatgtcaaacaaatttttgaatctttgactagctatctatgagtatcaactagaaaaaggaattgtgagcaaaaaaggaaatgatcaactagaaaagggaagttcttgacaagataatatatagtacattgtatgtactctcaactatatagttttgtccctcttcttgtgtaactattgtcttcttgatatatcttattatcttgtaatcttgaaaatttcattgtttttcccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="23839" stop="22101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23539" g_stop="23460" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23459" i_stop="23350" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23349" g_stop="23224" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="206" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23223" i_stop="22757" i_length="467">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22756" g_stop="22392" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="571" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E342207" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23539" e_stop="23460"/>
          <exon e_start="23349" e_stop="23224"/>
          <exon e_start="22756" e_stop="22392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</genome_strand>
        <mrna_strand>GGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727289" ref_strand="+" ref_description="SGN-E727289 [LA14BB02]">
      <seq>gatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactanaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaacaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="25560" stop="22359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25248" g_stop="25148" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="186" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25147" i_stop="24527" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24526" g_stop="24389" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="324" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24388" i_stop="24300" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24299" g_stop="24156" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="468" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24155" i_stop="23891" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23890" g_stop="23815" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="544" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23814" i_stop="23546" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23545" g_stop="23460" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="630" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23459" i_stop="23350" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23349" g_stop="23224" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="756" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23223" i_stop="22757" i_length="467">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22756" g_stop="22659" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="854" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E727289" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25248" e_stop="25148"/>
          <exon e_start="24526" e_stop="24389"/>
          <exon e_start="24299" e_stop="24156"/>
          <exon e_start="23890" e_stop="23815"/>
          <exon e_start="23545" e_stop="23460"/>
          <exon e_start="23349" e_stop="23224"/>
          <exon e_start="22756" e_stop="22659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGC</genome_strand>
        <mrna_strand>CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTANAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAAACAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700344" ref_strand="+" ref_description="SGN-E700344 [FA12DD10]">
      <seq>gggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaccaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="25560" stop="22361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25248" g_stop="25148" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="164" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25147" i_stop="24527" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24526" g_stop="24389" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="302" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24388" i_stop="24300" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24299" g_stop="24156" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="446" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24155" i_stop="23891" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23890" g_stop="23815" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="522" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23814" i_stop="23546" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23545" g_stop="23460" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="608" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23459" i_stop="23350" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23349" g_stop="23224" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="734" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23223" i_stop="22757" i_length="467">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22756" g_stop="22661" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="830" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E700344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25248" e_stop="25148"/>
          <exon e_start="24526" e_stop="24389"/>
          <exon e_start="24299" e_stop="24156"/>
          <exon e_start="23890" e_stop="23815"/>
          <exon e_start="23545" e_stop="23460"/>
          <exon e_start="23349" e_stop="23224"/>
          <exon e_start="22756" e_stop="22661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGG</genome_strand>
        <mrna_strand>CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265643" ref_strand="+" ref_description="SGN-E265643 [cLEI-14-L19]">
      <seq>tatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="24763" stop="22928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24463" g_stop="24389" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24388" i_stop="24300" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24299" g_stop="24156" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="219" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24155" i_stop="23891" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23890" g_stop="23815" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="295" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23814" i_stop="23546" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23545" g_stop="23460" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="381" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23459" i_stop="23350" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23349" g_stop="23228" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="503" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E265643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24463" e_stop="24389"/>
          <exon e_start="24299" e_stop="24156"/>
          <exon e_start="23890" e_stop="23815"/>
          <exon e_start="23545" e_stop="23460"/>
          <exon e_start="23349" e_stop="23228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</genome_strand>
        <mrna_strand>TATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318865" ref_strand="+" ref_description="SGN-E318865 [cTOB-11-E23]">
      <seq>ttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="24736" stop="22928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24436" g_stop="24389" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24388" i_stop="24300" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24299" g_stop="24156" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="192" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24155" i_stop="23891" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23890" g_stop="23815" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="268" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23814" i_stop="23546" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23545" g_stop="23460" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="354" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23459" i_stop="23350" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23349" g_stop="23228" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="476" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E318865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24436" e_stop="24389"/>
          <exon e_start="24299" e_stop="24156"/>
          <exon e_start="23890" e_stop="23815"/>
          <exon e_start="23545" e_stop="23460"/>
          <exon e_start="23349" e_stop="23228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</genome_strand>
        <mrna_strand>TTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729389" ref_strand="+" ref_description="SGN-E729389 [LA20DF07]">
      <seq>gaaacgggtactgaaccccacanaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatgggaggtggttcgattcctgcactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="25560" stop="22958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25248" g_stop="25148" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="169" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25147" i_stop="24527" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24526" g_stop="24389" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="307" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24388" i_stop="24300" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24299" g_stop="24156" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24155" i_stop="23891" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23890" g_stop="23815" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="527" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23814" i_stop="23546" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23545" g_stop="23460" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="613" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23459" i_stop="23350" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23349" g_stop="23258" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="705" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E729389" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25248" e_stop="25148"/>
          <exon e_start="24526" e_stop="24389"/>
          <exon e_start="24299" e_stop="24156"/>
          <exon e_start="23890" e_stop="23815"/>
          <exon e_start="23545" e_stop="23460"/>
          <exon e_start="23349" e_stop="23258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAG</genome_strand>
        <mrna_strand>CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGGAGGTGGTTCGATTCCTGCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424837" ref_strand="-" ref_description="SGN-E424837 [STM-44-M7]">
      <seq>aaggcagtgtatgtgaagaacttgcccaaacacattaacccaagacaagctaagagagttgtttgaacatcatgggaaaattacgaaagtagttcttcctccagctaaaccagggcaagaacagagcagatatggctttgttcactttgctgataggtcaagtgctatgagggccctgaagaacactgagaaatatgaaatagatgggaaaattctggagtgttcacttgcaaagcctcaggtagatcaaaaatcttcaggaggatcaagctcacaaaagggagtcacacttccaacttacccttcctcgtattggatatggcatgatgggaaccccttatggtgcgctaggtgcaggctttggtgcaggatatggtggtccaggtgtagcccaaccaatggtttatggaagaggagctacacctggtggtttggcaatgatgccgatgcttttacctgatggaaggattggatatgtcctgcaacaaccaggagttatgcattctcctcctccaacatcacgaggtggacgtagtggtggaggcagttcaagtgacggaaggcggggtgacagtggtggacgagggcgtccccgttacaacccatactaggtgtaaatgaacgccgttgatgttataaagcacaatgtttgctgtcactttgacaattaagctatttgactgatgtatctgtagcctgtttttaaagaattgactctcatctctactctcttcgataaattatgttcttctctgttagaatngtctcttatttttcaaaaaatatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="32261" stop="29264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31961" g_stop="31757" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31756" i_stop="31662" i_length="95">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31661" g_stop="31474" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="395" r_length="189" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31473" i_stop="30265" i_length="1209">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30264" g_stop="30179" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="481" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30178" i_stop="29828" i_length="351">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29827" g_stop="29565" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="754" r_length="273" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E424837" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424837" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31961" e_stop="31757"/>
          <exon e_start="31661" e_stop="31474"/>
          <exon e_start="30264" e_stop="30179"/>
          <exon e_start="29827" e_stop="29565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAA-CCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATGGTATATCCGTTTCCACTTCTTTCTTTGGATTGGAGTTCACTTCATACAACAAAATGTATAGGGACACTGATGCATTGATGCTCTCTTTGGATCAGGGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCC-TCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAAGTAAGAGCTTTTTTTCACGTCTTTGATGGTGAATGCTTGTATTTGCCGTTGATGTTCTAGGTCTTTGCATAATTTTCGTTATATTTAGGTCATTACATTTTAATACTAAATAATTTGTCTGGTAAAAATATATAGTTCTGAAAACTACAATTCTCAAAACTACTTCTCCCTACATGGAGATGTGCGTCTTCCAAAGGAAAGACTCCGGAATAGTACCTAGGCATAGTTGAAGTGTATGAATGGAGTTCTAATCCCAATGAGTTAATAATGTTTATATATGTATCATTTGCATGTCATGTTTTTTTCTTATGTTGTATTCTTAACTTAGTTTGCATTGATCGTGAGCGGTTATTGGGGTTTTGGGACAAGTTAAATCTTGACCTTCGGAAAAGGAGTGTTTTGAGGCAACTTTGCCCACTTGATTTTGGTCTACTTTGTTTCATCTTATCACCTTTATTTGTCATGTTGTTGAACCATAATACTCAGTGATGGATACCTGCCCCACCCATCCCAACAAAGAACAAGCAAAAAGATATTTGTTGTTTGGATAATTTCAAACATTTGATCCCCTTGGCTTTAGCATAGCGGAGCGCACATCACGTGATGTGTAGTTATGCGCACGTAACGGGTTCAAATCTTGCTGCACAAAAGCTCGGTAGTGTAGTGAAGAAGTATAAAGGGATGGGCTCATTATCCATTGAGTTTCGTACTGCATGCTACTAGCCTCAATGATTTTCCCATTATAAAAGAATAATCTTAAATAAGAGGATGGGGGGAAGAGTAAAGACAAGACGAAAGCAAGAGTTCCGGCATCTTACTTTACTAGTTTCATTTCCGTATGATACTTTCCTGTTGATCTGTAGCTTGTAAGCAAAGTATTCAGTTGCTAGGGTCTGTTAGTTTATTATGTGGCAGGTTGTGTGTGGCTTTTCTATTAATGATGATGAAGATGATTTATCATCTACACAATTTTGACAACTGTGTTCAATATGTAAAGCAAAAACTGTGGAGATAACCTGTTTCCGATGTGTTAATATTACATATGCTCATTCAGAGACCAAAAAATACCTATTTCAAAATTTCAGTTTTGATTAAATCTAAATAGATGAAAATCACAGGCCTTCTATAGTCATCCTCTTGTATAGCTTGTGTTTAGATAGATTTGTGAATCTGCAGCTTTACTAACACTCGTTGCTCCTCACTTCACAGCCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCTGTAAGTACAACCTGTCTATAGCAGTTGCTTCGCTAAGCGTGATAATGAATGGAAAAGTCCAATCTCTGATTTTATGATATAAAGGAAAACTAGTGTCCAGGAGCAAAACAACTTCTTTCTGCATTTTCTGAACTCCATTTATCGTGAGTCGTGGCTGAAATTAACGAAATAGAAGACCATTAATGCCATAATATCTAAAGACAGGCTTCATTTCTAGTGAAGCATTAAATACCATACTATTAGTAATAGGATGTTTAATTAGGGTTCCATCAGAAGTGCTTGTTCCCAAATGCTTCAATGGTGTTTAGCTTGTTTTCGTTGTTCTATTTCTGATCGCTCTTTCCCATCCAGGCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTA---GTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGAC----AA--TATTTGACTGATGTATCTGTAGCCTG--TTTAAAGAATAGACTCTCATCTCTACTCTCTTCGACAAGTCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>AAGGCAGTGTATGTGAAGAACTTGCCCAAACACATTAACCCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACGAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAGAAATATGAAATAGATG...............................................................................................GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGTCACACTTCCAACTTACCCTTCCTCGTATTGGATATGGCATGATGGGAACCCCTTATGGTGCGCTAGGTGCAGGCTTTGGTGCAGGATATGGTGGTCCAGGTGTAGCCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCT...............................................................................................................................................................................................................................................................................................................................................................GCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCGTTGATGTTATAAAGCACAATGTTTGCTGTCACTTTGACAATTAAGCTATTTGACTGATGTATCTGTAGCCTGTTTTTAAAGAATTGACTCTCATCTCTACTCTCTTCGATAAAT-TATGTTCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372916" ref_strand="+" ref_description="SGN-E372916 [TUS-32-J1](-)">
      <seq>gttgtttgaacatcatgggaaaattacaaaagtagttcttcctccagctaaaccagggcaagaacagagcagatatggctttgttcactttgctgataggtcaagtgctatgagggccctgaagaacactgaaaaatatgagatagatgggaaaattctggagtgttcacttgcaaagcctcaggtagatcaaaaatcttcaggaggatcaagctcacaaaagggagccactcttccaatttaccctcctcgtattggatatggcatgatgggagccccttatggtgctctaggtgcaggttttggtgcaggatttggtggtccaggtgtagcccaaccaatggtttatggaagaggagctacacctggtggtttggcaatgatgccgatgcttttacctgatggaaggattggatatgtcctgcaacaaccaggagttatgcattctcctcctccaacatcacgaggtggacgtagtggaggcagttcaagtgacggaaggcggggtgacagtggtggacgagggcgtccccgttacaacccatactaggtgtaaatgaacgccattgatgttataaagcacaatgtttgctgtcagtttgacaatatttgactgatgtatctgtagcctgtttaaagaatagactctcatctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="32205" stop="29294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31905" g_stop="31757" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31756" i_stop="31662" i_length="95">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31661" g_stop="31474" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="337" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31473" i_stop="30265" i_length="1209">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30264" g_stop="30179" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="423" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30178" i_stop="29828" i_length="351">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29827" g_stop="29588" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="663" r_length="240" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E372916" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31905" e_stop="31757"/>
          <exon e_start="31661" e_stop="31474"/>
          <exon e_start="30264" e_stop="30179"/>
          <exon e_start="29827" e_stop="29588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATGGTATATCCGTTTCCACTTCTTTCTTTGGATTGGAGTTCACTTCATACAACAAAATGTATAGGGACACTGATGCATTGATGCTCTCTTTGGATCAGGGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAAGTAAGAGCTTTTTTTCACGTCTTTGATGGTGAATGCTTGTATTTGCCGTTGATGTTCTAGGTCTTTGCATAATTTTCGTTATATTTAGGTCATTACATTTTAATACTAAATAATTTGTCTGGTAAAAATATATAGTTCTGAAAACTACAATTCTCAAAACTACTTCTCCCTACATGGAGATGTGCGTCTTCCAAAGGAAAGACTCCGGAATAGTACCTAGGCATAGTTGAAGTGTATGAATGGAGTTCTAATCCCAATGAGTTAATAATGTTTATATATGTATCATTTGCATGTCATGTTTTTTTCTTATGTTGTATTCTTAACTTAGTTTGCATTGATCGTGAGCGGTTATTGGGGTTTTGGGACAAGTTAAATCTTGACCTTCGGAAAAGGAGTGTTTTGAGGCAACTTTGCCCACTTGATTTTGGTCTACTTTGTTTCATCTTATCACCTTTATTTGTCATGTTGTTGAACCATAATACTCAGTGATGGATACCTGCCCCACCCATCCCAACAAAGAACAAGCAAAAAGATATTTGTTGTTTGGATAATTTCAAACATTTGATCCCCTTGGCTTTAGCATAGCGGAGCGCACATCACGTGATGTGTAGTTATGCGCACGTAACGGGTTCAAATCTTGCTGCACAAAAGCTCGGTAGTGTAGTGAAGAAGTATAAAGGGATGGGCTCATTATCCATTGAGTTTCGTACTGCATGCTACTAGCCTCAATGATTTTCCCATTATAAAAGAATAATCTTAAATAAGAGGATGGGGGGAAGAGTAAAGACAAGACGAAAGCAAGAGTTCCGGCATCTTACTTTACTAGTTTCATTTCCGTATGATACTTTCCTGTTGATCTGTAGCTTGTAAGCAAAGTATTCAGTTGCTAGGGTCTGTTAGTTTATTATGTGGCAGGTTGTGTGTGGCTTTTCTATTAATGATGATGAAGATGATTTATCATCTACACAATTTTGACAACTGTGTTCAATATGTAAAGCAAAAACTGTGGAGATAACCTGTTTCCGATGTGTTAATATTACATATGCTCATTCAGAGACCAAAAAATACCTATTTCAAAATTTCAGTTTTGATTAAATCTAAATAGATGAAAATCACAGGCCTTCTATAGTCATCCTCTTGTATAGCTTGTGTTTAGATAGATTTGTGAATCTGCAGCTTTACTAACACTCGTTGCTCCTCACTTCACAGCCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCTGTAAGTACAACCTGTCTATAGCAGTTGCTTCGCTAAGCGTGATAATGAATGGAAAAGTCCAATCTCTGATTTTATGATATAAAGGAAAACTAGTGTCCAGGAGCAAAACAACTTCTTTCTGCATTTTCTGAACTCCATTTATCGTGAGTCGTGGCTGAAATTAACGAAATAGAAGACCATTAATGCCATAATATCTAAAGACAGGCTTCATTTCTAGTGAAGCATTAAATACCATACTATTAGTAATAGGATGTTTAATTAGGGTTCCATCAGAAGTGCTTGTTCCCAAATGCTTCAATGGTGTTTAGCTTGTTTTCGTTGTTCTATTTCTGATCGCTCTTTCCCATCCAGGCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGACAATATTTGACTGATGTATCTGTAGCCTGTTTAAAGAATAGACTCTCATCTCTACTCTCT</genome_strand>
        <mrna_strand>GTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATG...............................................................................................GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCT...............................................................................................................................................................................................................................................................................................................................................................GCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGACAATATTTGACTGATGTATCTGTAGCCTGTTTAAAGAATAGACTCTCATCTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586289" ref_strand="+" ref_description="SGN-E586289 [60342]">
      <seq>tgcctcgtgccgaattcggcacgaggcaatggtttatggaagaggagctacacctggtggtttggcaatgatgccgatgcttttacctgatggaaggattggatatgtcctgcaacaaccaggagttatgcattctcctcctccaacatcacgaggtggacgtagtggaggcagttccaagtgacggaaggcggggtgacagtggtggaagagggcgtccccgttacaacccatactaggtgtaaatgaacgccgttgatgttataaagcacaatgtttgctgtcactttgacaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="30569" stop="29344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30264" g_stop="30179" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="111" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30178" i_stop="29828" i_length="351">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29827" g_stop="29641" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="299" r_length="188" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E586289" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30264" e_stop="30179"/>
          <exon e_start="29827" e_stop="29641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCTGTAAGTACAACCTGTCTATAGCAGTTGCTTCGCTAAGCGTGATAATGAATGGAAAAGTCCAATCTCTGATTTTATGATATAAAGGAAAACTAGTGTCCAGGAGCAAAACAACTTCTTTCTGCATTTTCTGAACTCCATTTATCGTGAGTCGTGGCTGAAATTAACGAAATAGAAGACCATTAATGCCATAATATCTAAAGACAGGCTTCATTTCTAGTGAAGCATTAAATACCATACTATTAGTAATAGGATGTTTAATTAGGGTTCCATCAGAAGTGCTTGTTCCCAAATGCTTCAATGGTGTTTAGCTTGTTTTCGTTGTTCTATTTCTGATCGCTCTTTCCCATCCAGGCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTT-CAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGACAATATT</genome_strand>
        <mrna_strand>GCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCT...............................................................................................................................................................................................................................................................................................................................................................GCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTTCCAAGTGACGGAAGGCGGGGTGACAGTGGTGGAAGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCGTTGATGTTATAAAGCACAATGTTTGCTGTCACTTTGACAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470556" ref_strand="+" ref_description="SGN-E470556 [cSTB-18-N11]">
      <seq>tgaattcgggtaaaaatcgtggattcgcttttatagaatattacaatcatgcatgtgcagagtattcaagacaagagatgtcaaattcagattttaagcttgatgataatgcaccaactgttagctgggcagatcccaaaaatgctgaaactgcttcttcacaggttaaggcagtgtatgtgaagaacttgcccaaacacattaaccaagacaagctaagagagttgtttgaacatcatgggaaaattacgaaagtagttcttcctccagctaaaccagggcaagaacagagcagatatggctttgttcactttgctgataggtcaagtgctatgagggccctgaagaacactgagaaatatgaaatagatgggaaaattctggagtgttcacttgcaaagcctcaggtagatcaaaaatcttcaggaggatcaagctcacaaaagggagtcacacttccaacttaccctcctcgtattggatatggcatgatgggaaccccttatggtgcgctaggtgcaggctttggtgcaggatatggtggtccaggtgtagcccaaccaatggtttatggaagaggagctacacctggtggtttggcaatgatgccgatgcttttacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="32907" stop="29898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32607" g_stop="32444" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32443" i_stop="31965" i_length="479">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31964" g_stop="31757" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="372" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31756" i_stop="31662" i_length="95">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31661" g_stop="31474" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="560" r_length="188" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31473" i_stop="30265" i_length="1209">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30264" g_stop="30198" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="627" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E470556" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32607" e_stop="32444"/>
          <exon e_start="31964" e_stop="31757"/>
          <exon e_start="31661" e_stop="31474"/>
          <exon e_start="30264" e_stop="30198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAGGTTCCTACTTCCAGAATTCTTGCAAATTTTATCTCTCCTCTGCATATAGACTAATATGCTGCAGGGTGCTTTCTTAAGATACTCACACATATGGTTATTTCTATTCAACATAATTTTTCTGTGCTACATGTTGGTAAAGTCTCTTTGTAACAAGGAATATATCTGTGAACATTTCATCTCCTGCAAAAGCTCCCCTTTCCCCCAAACCCCATAACTAAAAGGACTAAAATATTGCTTAGTTCCAACTGATTAAAATACAATGCTTTTGGGCATATATGCATTCTTCTTTGCTTTTGGGATTTCATTTGGGGTATCTTTTCCTAAGTTGCTGTACTACCTAGTAGCTATATTTCCTTAAGAATGGTTTATTGTTTGGTGCATAAAACACTGCAATATGGTCCAGCTTGGTTGATTTACAAATGTCTGAAGATGTGGAATTATAATGTAAGCATCATGTTGTCTCCTTTGGAACTCTATAGGTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATGGTATATCCGTTTCCACTTCTTTCTTTGGATTGGAGTTCACTTCATACAACAAAATGTATAGGGACACTGATGCATTGATGCTCTCTTTGGATCAGGGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAAGTAAGAGCTTTTTTTCACGTCTTTGATGGTGAATGCTTGTATTTGCCGTTGATGTTCTAGGTCTTTGCATAATTTTCGTTATATTTAGGTCATTACATTTTAATACTAAATAATTTGTCTGGTAAAAATATATAGTTCTGAAAACTACAATTCTCAAAACTACTTCTCCCTACATGGAGATGTGCGTCTTCCAAAGGAAAGACTCCGGAATAGTACCTAGGCATAGTTGAAGTGTATGAATGGAGTTCTAATCCCAATGAGTTAATAATGTTTATATATGTATCATTTGCATGTCATGTTTTTTTCTTATGTTGTATTCTTAACTTAGTTTGCATTGATCGTGAGCGGTTATTGGGGTTTTGGGACAAGTTAAATCTTGACCTTCGGAAAAGGAGTGTTTTGAGGCAACTTTGCCCACTTGATTTTGGTCTACTTTGTTTCATCTTATCACCTTTATTTGTCATGTTGTTGAACCATAATACTCAGTGATGGATACCTGCCCCACCCATCCCAACAAAGAACAAGCAAAAAGATATTTGTTGTTTGGATAATTTCAAACATTTGATCCCCTTGGCTTTAGCATAGCGGAGCGCACATCACGTGATGTGTAGTTATGCGCACGTAACGGGTTCAAATCTTGCTGCACAAAAGCTCGGTAGTGTAGTGAAGAAGTATAAAGGGATGGGCTCATTATCCATTGAGTTTCGTACTGCATGCTACTAGCCTCAATGATTTTCCCATTATAAAAGAATAATCTTAAATAAGAGGATGGGGGGAAGAGTAAAGACAAGACGAAAGCAAGAGTTCCGGCATCTTACTTTACTAGTTTCATTTCCGTATGATACTTTCCTGTTGATCTGTAGCTTGTAAGCAAAGTATTCAGTTGCTAGGGTCTGTTAGTTTATTATGTGGCAGGTTGTGTGTGGCTTTTCTATTAATGATGATGAAGATGATTTATCATCTACACAATTTTGACAACTGTGTTCAATATGTAAAGCAAAAACTGTGGAGATAACCTGTTTCCGATGTGTTAATATTACATATGCTCATTCAGAGACCAAAAAATACCTATTTCAAAATTTCAGTTTTGATTAAATCTAAATAGATGAAAATCACAGGCCTTCTATAGTCATCCTCTTGTATAGCTTGTGTTTAGATAGATTTGTGAATCTGCAGCTTTACTAACACTCGTTGCTCCTCACTTCACAGCCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATG</genome_strand>
        <mrna_strand>TGAATTCGGGTAAAAATCGTGGATTCGCTTTTATAGAATATTACAATCATGCATGTGCAGAGTATTCAAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGCAGTGTATGTGAAGAACTTGCCCAAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACGAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAGAAATATGAAATAGATG...............................................................................................GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGTCACACTTCCAACTTACCCTCCTCGTATTGGATATGGCATGATGGGAACCCCTTATGGTGCGCTAGGTGCAGGCTTTGGTGCAGGATATGGTGGTCCAGGTGTAGCCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707315" ref_strand="+" ref_description="SGN-E707315 [FA32CF06]">
      <seq>ccaattagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcgaggaagatatgaggacggctgtaacaaatgtagggcctggggttattactattgagttagtgaaggatcctctgaattccggtaaaaatcgtggattcgcttttatagagtattacaatcatgcatgtgcagagtattctagacaagagatgtcaaattcagattttaagcttgatgataatgcaccaactgttagctgggcagatcccaaaaatgctgaaactgcttcttcacaggttaaggcagtgtatgtgaagaacttgccccaacacattaaccaagacaagctaagagagttgtttgaacatcatgggaaaattacaaaagtagttcttcctccagctaaaccagggcaagaacagagcagatatggctttgttcactttgctgataggtcaagtgctatgagggccctgaagaacactgaaaaatatgagatagatgggaaaattctggagtgttcacttgcaaagcctcaggtagatcaaaaatcttcaggaggatcaagctcacaaaagggagccactcttccaatttaccctcctcgtattggatatggcatgatgggagccccttatggtgctctaggtgcaggttttggtgcaggatttggtggtccaggtgtagcccaaccaatggtttatggaagaggagctacacctggtggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="33466" stop="29927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33168" g_stop="33140" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32978" g_stop="32838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="170" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32614" g_stop="32444" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="341" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32443" i_stop="31965" i_length="479">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31964" g_stop="31757" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="549" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31756" i_stop="31662" i_length="95">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31661" g_stop="31474" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="737" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31473" i_stop="30265" i_length="1209">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30264" g_stop="30227" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="775" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E707315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33168" e_stop="33140"/>
          <exon e_start="32978" e_stop="32838"/>
          <exon e_start="32614" e_stop="32444"/>
          <exon e_start="31964" e_stop="31757"/>
          <exon e_start="31661" e_stop="31474"/>
          <exon e_start="30264" e_stop="30227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAGGTTCCTACTTCCAGAATTCTTGCAAATTTTATCTCTCCTCTGCATATAGACTAATATGCTGCAGGGTGCTTTCTTAAGATACTCACACATATGGTTATTTCTATTCAACATAATTTTTCTGTGCTACATGTTGGTAAAGTCTCTTTGTAACAAGGAATATATCTGTGAACATTTCATCTCCTGCAAAAGCTCCCCTTTCCCCCAAACCCCATAACTAAAAGGACTAAAATATTGCTTAGTTCCAACTGATTAAAATACAATGCTTTTGGGCATATATGCATTCTTCTTTGCTTTTGGGATTTCATTTGGGGTATCTTTTCCTAAGTTGCTGTACTACCTAGTAGCTATATTTCCTTAAGAATGGTTTATTGTTTGGTGCATAAAACACTGCAATATGGTCCAGCTTGGTTGATTTACAAATGTCTGAAGATGTGGAATTATAATGTAAGCATCATGTTGTCTCCTTTGGAACTCTATAGGTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATGGTATATCCGTTTCCACTTCTTTCTTTGGATTGGAGTTCACTTCATACAACAAAATGTATAGGGACACTGATGCATTGATGCTCTCTTTGGATCAGGGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAAGTAAGAGCTTTTTTTCACGTCTTTGATGGTGAATGCTTGTATTTGCCGTTGATGTTCTAGGTCTTTGCATAATTTTCGTTATATTTAGGTCATTACATTTTAATACTAAATAATTTGTCTGGTAAAAATATATAGTTCTGAAAACTACAATTCTCAAAACTACTTCTCCCTACATGGAGATGTGCGTCTTCCAAAGGAAAGACTCCGGAATAGTACCTAGGCATAGTTGAAGTGTATGAATGGAGTTCTAATCCCAATGAGTTAATAATGTTTATATATGTATCATTTGCATGTCATGTTTTTTTCTTATGTTGTATTCTTAACTTAGTTTGCATTGATCGTGAGCGGTTATTGGGGTTTTGGGACAAGTTAAATCTTGACCTTCGGAAAAGGAGTGTTTTGAGGCAACTTTGCCCACTTGATTTTGGTCTACTTTGTTTCATCTTATCACCTTTATTTGTCATGTTGTTGAACCATAATACTCAGTGATGGATACCTGCCCCACCCATCCCAACAAAGAACAAGCAAAAAGATATTTGTTGTTTGGATAATTTCAAACATTTGATCCCCTTGGCTTTAGCATAGCGGAGCGCACATCACGTGATGTGTAGTTATGCGCACGTAACGGGTTCAAATCTTGCTGCACAAAAGCTCGGTAGTGTAGTGAAGAAGTATAAAGGGATGGGCTCATTATCCATTGAGTTTCGTACTGCATGCTACTAGCCTCAATGATTTTCCCATTATAAAAGAATAATCTTAAATAAGAGGATGGGGGGAAGAGTAAAGACAAGACGAAAGCAAGAGTTCCGGCATCTTACTTTACTAGTTTCATTTCCGTATGATACTTTCCTGTTGATCTGTAGCTTGTAAGCAAAGTATTCAGTTGCTAGGGTCTGTTAGTTTATTATGTGGCAGGTTGTGTGTGGCTTTTCTATTAATGATGATGAAGATGATTTATCATCTACACAATTTTGACAACTGTGTTCAATATGTAAAGCAAAAACTGTGGAGATAACCTGTTTCCGATGTGTTAATATTACATATGCTCATTCAGAGACCAAAAAATACCTATTTCAAAATTTCAGTTTTGATTAAATCTAAATAGATGAAAATCACAGGCCTTCTATAGTCATCCTCTTGTATAGCTTGTGTTTAGATAGATTTGTGAATCTGCAGCTTTACTAACACTCGTTGCTCCTCACTTCACAGCCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTT</genome_strand>
        <mrna_strand>CCAATTAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG...............................................................................................................................................................................................................................GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATG...............................................................................................GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372917" ref_strand="+" ref_description="SGN-E372917 [TUS-32-J1]">
      <seq>tggcaaccaaggctattaaagagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcgaggaagatatgaggacggctgtaacaaatgtagggcctggggttattactattgagttagtgaaggatcctctgaattccggtaaaaatcgtggattcgcttttatagagtattacaatcatgcatgtgcagagtattctagacaagagatgtcaaattcagattttaagcttgatgataatgcaccaactgttagctgggcagatcccaaaaatgctgaaactgcttcttcacaggttaaggcagtgtatgtgaagaacttgccccaacacattaaccaagacaagctaagagagttgtttgaacatcatgggaaaattacaaaagtagttcttcctccagctaaaccagggcaagaacagagcagatatggctttgttcactttgctgataggtcaagtgctatgagggccctgaagaacactgaaaaatatgagatagatgggaaaattctggagtgttcacttgcaaagcctcaggtagatcaaaaatcttcaggaggatcaagctcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="33483" stop="31290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33183" g_stop="33140" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32978" g_stop="32838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="185" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32614" g_stop="32444" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="356" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32443" i_stop="31965" i_length="479">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31964" g_stop="31757" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="564" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31756" i_stop="31662" i_length="95">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31661" g_stop="31590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="636" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E372917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33183" e_stop="33140"/>
          <exon e_start="32978" e_stop="32838"/>
          <exon e_start="32614" e_stop="32444"/>
          <exon e_start="31964" e_stop="31757"/>
          <exon e_start="31661" e_stop="31590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAGGTTCCTACTTCCAGAATTCTTGCAAATTTTATCTCTCCTCTGCATATAGACTAATATGCTGCAGGGTGCTTTCTTAAGATACTCACACATATGGTTATTTCTATTCAACATAATTTTTCTGTGCTACATGTTGGTAAAGTCTCTTTGTAACAAGGAATATATCTGTGAACATTTCATCTCCTGCAAAAGCTCCCCTTTCCCCCAAACCCCATAACTAAAAGGACTAAAATATTGCTTAGTTCCAACTGATTAAAATACAATGCTTTTGGGCATATATGCATTCTTCTTTGCTTTTGGGATTTCATTTGGGGTATCTTTTCCTAAGTTGCTGTACTACCTAGTAGCTATATTTCCTTAAGAATGGTTTATTGTTTGGTGCATAAAACACTGCAATATGGTCCAGCTTGGTTGATTTACAAATGTCTGAAGATGTGGAATTATAATGTAAGCATCATGTTGTCTCCTTTGGAACTCTATAGGTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATGGTATATCCGTTTCCACTTCTTTCTTTGGATTGGAGTTCACTTCATACAACAAAATGTATAGGGACACTGATGCATTGATGCTCTCTTTGGATCAGGGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAA</genome_strand>
        <mrna_strand>TGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG...............................................................................................................................................................................................................................GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATG...............................................................................................GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293867" ref_strand="+" ref_description="SGN-E293867 [cLET-13-A15]">
      <seq>tggcaaccaaggctattaaagagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcgaggaagatatgaggacggctgtaacaaatgtagggcctggggttattactattgagttagtgaaggatcctctgaattccggtaaaaatcgtggattcgcttttatagagtattacaatcatgcatgtgcagagtattctagacaagagatgtcaaattcagattttaagcttgatgataatgcaccaactgttagctgggcagatcccaaaaatgctgaaactgcttcttcacaggttaaggcactgtatgtgaagaacttgccccaacacattaaccaagacaagctaagagagttgtttgaacatcatgggaaaattacaaaagtagttctttctccagctaaaccagggcaagaacagagcagatatggctttgttcactttgctgataggtcaagtgctatgagggccctgaagaacactgaaaaatatgagatagatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="33483" stop="31452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33183" g_stop="33140" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32978" g_stop="32838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="185" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32614" g_stop="32444" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="356" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32443" i_stop="31965" i_length="479">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31964" g_stop="31757" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="564" r_length="208" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31756" i_stop="31662" i_length="95">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31661" g_stop="31657" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="569" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E293867" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33183" e_stop="33140"/>
          <exon e_start="32978" e_stop="32838"/>
          <exon e_start="32614" e_stop="32444"/>
          <exon e_start="31964" e_stop="31757"/>
          <exon e_start="31661" e_stop="31657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAGGTTCCTACTTCCAGAATTCTTGCAAATTTTATCTCTCCTCTGCATATAGACTAATATGCTGCAGGGTGCTTTCTTAAGATACTCACACATATGGTTATTTCTATTCAACATAATTTTTCTGTGCTACATGTTGGTAAAGTCTCTTTGTAACAAGGAATATATCTGTGAACATTTCATCTCCTGCAAAAGCTCCCCTTTCCCCCAAACCCCATAACTAAAAGGACTAAAATATTGCTTAGTTCCAACTGATTAAAATACAATGCTTTTGGGCATATATGCATTCTTCTTTGCTTTTGGGATTTCATTTGGGGTATCTTTTCCTAAGTTGCTGTACTACCTAGTAGCTATATTTCCTTAAGAATGGTTTATTGTTTGGTGCATAAAACACTGCAATATGGTCCAGCTTGGTTGATTTACAAATGTCTGAAGATGTGGAATTATAATGTAAGCATCATGTTGTCTCCTTTGGAACTCTATAGGTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATGGTATATCCGTTTCCACTTCTTTCTTTGGATTGGAGTTCACTTCATACAACAAAATGTATAGGGACACTGATGCATTGATGCTCTCTTTGGATCAGGGAAA</genome_strand>
        <mrna_strand>TGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG...............................................................................................................................................................................................................................GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGCACTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTTCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATG...............................................................................................GGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342529" ref_strand="+" ref_description="SGN-E342529 [cTOF-8-H18]">
      <seq>atatatctgaggcagatgtgagggaattttgtgagacaattggggaagttacagaggtaagaataatgaaagggaaggactcaactcagaacaaaggatatgcatttgttacctatagaaacaaggaattggcaaccaaggctattaaagagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggagcgaggaagatatgaggacggctgtaacaaatgtagggcctggggttattactattgagttagtgaaggatcctctgaattccggtaaaaatcgtggattcgcttttatagagtattacaatcatgcatgtgcagagtattctagacaagagatgtcaaattcagattttaagcttgatgataatgcaccaactgttagctgggcagatcccaaaaatgctgaaactgcttcttcacaggttaaggcagtgtatgtgaagaacttgccccaacacattaaccaagacaagctaagagagttgtttgaacatcatgggaaaattacaaaagtagttcttcctccagctaaaccagggcaagaacagagcagatatggcttttgttcactttgctgataggtcaagtgctatgagggcccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="33691" stop="31484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33391" g_stop="33336" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33335" i_stop="33257" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33256" g_stop="33140" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="173" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32978" g_stop="32838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="314" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32614" g_stop="32444" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="485" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32443" i_stop="31965" i_length="479">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31964" g_stop="31784" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="668" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E342529" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33391" e_stop="33336"/>
          <exon e_start="33256" e_stop="33140"/>
          <exon e_start="32978" e_stop="32838"/>
          <exon e_start="32614" e_stop="32444"/>
          <exon e_start="31964" e_stop="31784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAGGTAAATTCTTTTCTTGTTCATTATCTGTTCTTTATTGGTATCCCTAATTTTACACGGATGACATGCATGAAAATGCCAGGTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAGGTTCCTACTTCCAGAATTCTTGCAAATTTTATCTCTCCTCTGCATATAGACTAATATGCTGCAGGGTGCTTTCTTAAGATACTCACACATATGGTTATTTCTATTCAACATAATTTTTCTGTGCTACATGTTGGTAAAGTCTCTTTGTAACAAGGAATATATCTGTGAACATTTCATCTCCTGCAAAAGCTCCCCTTTCCCCCAAACCCCATAACTAAAAGGACTAAAATATTGCTTAGTTCCAACTGATTAAAATACAATGCTTTTGGGCATATATGCATTCTTCTTTGCTTTTGGGATTTCATTTGGGGTATCTTTTCCTAAGTTGCTGTACTACCTAGTAGCTATATTTCCTTAAGAATGGTTTATTGTTTGGTGCATAAAACACTGCAATATGGTCCAGCTTGGTTGATTTACAAATGTCTGAAGATGTGGAATTATAATGTAAGCATCATGTTGTCTCCTTTGGAACTCTATAGGTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGC-TTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGG-CCCTGA</genome_strand>
        <mrna_strand>ATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG...............................................................................GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGAGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG...............................................................................................................................................................................................................................GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268706" ref_strand="+" ref_description="SGN-E268706 [cLEM-16-B3]">
      <seq>agagctcaacaacactgaactgaaaggaaaaagaggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcgaggaagatatgaagacggctgttacaaatgttaggcctggggttattactattgagttagtgaaagatcctctgaattccggtaaaaatcgtggattcgcttttatagagtattacaatcatgcatgtgcagagtattctagacaagagatgtcaaattcagattttaagcttgatgataatgcaccaactgttagctgggcagatcccaaaaatgctgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="33464" stop="32156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33164" g_stop="33140" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32978" g_stop="32838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="167" r_length="142" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32614" g_stop="32456" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="326" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E268706" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33164" e_stop="33140"/>
          <exon e_start="32978" e_stop="32838"/>
          <exon e_start="32614" e_stop="32456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAG-GGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACT</genome_strand>
        <mrna_strand>AGAGCTCAACAACACTGAACTGAAA.................................................................................................................................................................GGAAAAAGAGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAAGACGGCTGTTACAAATGTTAGGCCTGGGGTTATTACTATTGAGTTAGTGAAA...............................................................................................................................................................................................................................GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725350" ref_strand="+" ref_description="SGN-E725350 [FC26DD03]">
      <seq>ggcgaattggcggccaatcggccgaattggagaagaaatttactttcagagaaactaaaattagctgtcgattatcgcttttgcttcaatagttgaagaaggaaaaagggttctcaatttctatctcaggagttgcagcgccagattatcttcctagaaatataagatgccgagaacaagggccagtgctgcagctattaaatctgaacccgagaaacctgttgagactgaagagcatgttgactttgaaggtgataatgaagaagaggaagagattgagtatgaagaggtagaagaagaggtggaaatggaagaggaagaagaagaggaggtcgaagaggaggtggaagaagaagaagaggaggaggaagaggaggaaaatggaagtgatggagctggtgaaggaaaggggtcagaggatgtaaaaatgaaagttgatgtagatgctgaggatatggagaaaaagcatgctgagctcctcgcccttcctcctcatggttcagaagtgtacataggtggtattactcatgatatatctgaggcagatgtgagggaattttgtgagacaattggggaagttacagaggtaagaataatgaaagggaaggactcaactcagaacaaaggatatgcatttgttacctatagaaacaaggaattggcaaccaaggctattaaagagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcgaggaagatatgaggacggctgtaacaaatgtagggcctggggttattactattgagttagtgaaggatcctctgaattccggtaaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="37154" stop="32290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36845" g_stop="36746" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="130" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36745" i_stop="33792" i_length="2954">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.160" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33791" g_stop="33336" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="586" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33335" i_stop="33257" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33256" g_stop="33140" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="703" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32978" g_stop="32838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="844" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32614" g_stop="32590" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="869" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E725350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36845" e_stop="36746"/>
          <exon e_start="33791" e_stop="33336"/>
          <exon e_start="33256" e_stop="33140"/>
          <exon e_start="32978" e_stop="32838"/>
          <exon e_start="32614" e_stop="32590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGGGTAACAATTACTTCTGTTTTATAGTACTACTTGCTAAATTATGATTTGTGTTTGTTTGTATGCAATTCAGCATTTTTCTGCTATTTTTGAGAACCCTTTTTGCGGGTTTATCCGGATTAGATTTGTTTTGTTCTTTGCGATGCAACTGGTTATCAAATTTTTGTGGGTATACGTACATGGATCTGTTTGAAATGACCTGTGGATTGATGTTGTTGTTTTGTTTCCTTGAACAAGCTTGATTTTTGCCGCTTTAGAGGTTAAATGAGTTAGAGAGGATATATTGAGACTGTACCACTATAATGTTGGTTTTTTAAACCTAAAAGGAGAACATAGATGTGGGTTAGTTTGCTGATAGGTGAAAATTGTGACATTAGGCATTTAGTGGGACACCCAAGGGTGTGACTTAGTGGTTAATGAAGTGGATTGGGCACCATAAGGTTTCAGGTTGAATTGATATTGCTGGTGGGAGGTGGTAGGCATTCTGTGGAATAGTTGATGTGCGTTGTTAAAAAGAAATGATTAATGGTGGGTTGTTGTCATTGTTGAAAGGTACATGTTTGGAAAGAGTGCATAACTGGGTTTCCAGGATGTATAGTACCACTGAAATATTCTTGATTTTGTGTTGGAGAATCTTCTGAATTAAATAAAGCTCAATATTTTGAAATTTCTTTGAACTAGAATTTGTAATAAGCTATACCTAGCTATTCTGTTCTTAGATTGGTCTAGGAAGGTAGGAGGATGGGAATTCATTGCACCATATTAGTACTTTTCTGTTTTAGACTCTTACAGACTAATTGTTCTAAAACTGCAGTGGTACGCAGTAGACATTTTCCAAGAAATAGGTGATGTTTCAGAAAAATGTTCTGTGTTTAGCTGATGTATGGAAAGACAAAGCATATTTATTAAACATGGATGATTATCCTTGTAGCAAGTTGCATATTTTGATTAAAATAAATTATAAAAGATTGATAATAAAGCCGAAATGCTGGTTAGAGTAGTGATTTGAAGTCAACAGTTGAAATAGTTGGGTAGAAGAATGATATCCGCACATAGAGTAGGGAAGTCTGTTTTTTCCTTTTGCTGAAAAAATATTTTCAGGCAATTAAGCACTATAAAATGTTTTGCATCATACAAATATACCTAGTTTGGACTTCAAAATCACTTATTATATTATATATGTTCGAAGACCACAAAATAGTGTTCTTAACTTAGAGTCAATGCATGATCCACATGCATTATTCTCACATTATGCGCTGTCATCTCATCTATCTATCTATTTAAGGCTAAAAACTGGCTACTTCTCCACAAGGTTCTGTTTGTTCTAGCTTTCCTGTCCCTTTCACAACATAGAATGCTTCTCAGAGTCTTAAAATGTTCAATATTGCTGTATTGCATAGTTGAGAATTCACCTTAAGTTTTAGAGCTTAAGGCTAATGTTTATTACTCCCTCCGTCCCAATGTGAGGTAGTTTGACTTGGCAGTTTAAGAAAACAGTCTAAAATAAGTTATAGATGTTGGTGTAGCTGTAGATCATTTTATTAAGGGTAAAATAGGTACTTTAAAGTTAGATTGTTACTGAATATTGAAATGCGTCATTCTTTTTGGGCTGACTTAAAAGAAAAGTGAGCATATAAATTGGGACAGGGAGTATATAGAAAGTAAATATTATGAAATTTAGTAATAAACAAATCGCTGGTGAAGTAGTTATGACTGCACTATTGCGATGCTACTGAACTTGGGAGATAATAATTATGTTCTGAACATTGGAATTTTGAGCAAATGGTTTTGATTTCTAAGTAAAGAACTCTGGTTTACTGCTTCCATCTTAAAAAACAAGCTTAGTTTAATGCAGGGGAGAAGTAGTTCAGTACTTTTGAGATCCTCTTGTGTGCTTTCCACTAGAAAATATAGTTGGAGAAAGAAACTCAGTGATCACTGGCTGACATTTCTTAACCGTTCTTGACTTTGCAAATAGATTTTATTGTGTCGACAGTCAACTTAGTGACATATGCATCAATGGAATATTTGGATTTGTCTACCACCCTCCCTAAAAGAAAAGGACATCAGTGACGTGTATTTCTTAGTTATTGCCTTCAATGGTTGATCTCACTTTTAAACCGTTTATTCAAGCTCGTGGGTGTAAGCTATCAGATTCATGTACTAATTAATATTCACAGTCTAACATCATTAAGAGACCAATTAGACTTCTGCTTAAGCTAGCTATGAATTAATCTGCTTCTTGAGGTCAAGTTTTAACTCTAATGGCCAGTAAGACGACTCACGGACTGTTCTGATATTGAGCAATGGTTTTCTAAAAAGTGCAGTCGAGGTTGCTCCTCTATCAGTACATTCACTGTATATCCATTAATTTACTGCAGGGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTTTTTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTGGCCTTTCATTTTGGTTCAGCCTGTCCACATTTGTCTTCTTTCTTTTGCAAATGCTTCCGGCTTCTGTGGTTCCATCAGAGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAGGTAAATTCTTTTCTTGTTCATTATCTGTTCTTTATTGGTATCCCTAATTTTACACGGATGACATGCATGAAAATGCCAGGTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAATTCCGGTAAAAATC</genome_strand>
        <mrna_strand>AGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG...............................................................................GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG...............................................................................................................................................................................................................................GATCCTCTGAATTCCGGTAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239475" ref_strand="+" ref_description="SGN-E239475 [cLED-23-L17]">
      <seq>gcagaagtgtacataggtggtattactcatgatatatctgaggcagatgtgagggaattttgtgagacaattggggaagttacagaggtaagaataatgaaagggaaggactcaactcagaacaaaggatatgcatttgttacctatagaaacaaggaattggcaaccaaggctattaaagagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcgaggaagatatgaggacggctgtaacaaatgtagggcctggggttattactattgaattagtgaaggatcctctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="33721" stop="32537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33422" g_stop="33336" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33335" i_stop="33257" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33256" g_stop="33140" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="204" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32978" g_stop="32838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="345" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32614" g_stop="32603" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="357" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E239475" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33422" e_stop="33336"/>
          <exon e_start="33256" e_stop="33140"/>
          <exon e_start="32978" e_stop="32838"/>
          <exon e_start="32614" e_stop="32603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAGGTAAATTCTTTTCTTGTTCATTATCTGTTCTTTATTGGTATCCCTAATTTTACACGGATGACATGCATGAAAATGCCAGGTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAGGTAGGACCTGTCTTTTTTTTTGACATATGTTTAGTTAGTCTGTTTTCTCACCTTTTTGTACAGTTCTTTATTGTCATAGGTGTACATATGCTGCTCCACGATAGTTACTCTTCCAATTATATCCTGTTCATGGAAAGAAGATTAACCCCCCCGTTCCCTCTCTCTATATGCAAGAAAAAAACTATTTTGTTGCTTTAATTTTTTTTCTACTTCTATGATGCAGGATCCTCTGAAT</genome_strand>
        <mrna_strand>GCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG...............................................................................GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAATTAGTGAAG...............................................................................................................................................................................................................................GATCCTCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337892" ref_strand="+" ref_description="SGN-E337892 [cTOE-14-K20]">
      <seq>gaaaatggaagtgatggagctggtgaaggaaaggggtcagaggatgtaaaaatgaaagttgatgtagatgctgaggatatggagaaaaagcatgctgagctcctcgcccttcctcctcatggttcagaagtgtacataggtggtattactcatgatatatctgaggcagatgtgagggaattttgtgagacaattggggaagttacagaggtaagaataatgaaagggaaggactcaactcagaacaaaggatatgcatttgttacctatagaaacaaggaattggcaaccaaggctattaaagagctcaacaacactgaactgaagggaaaaagggtcaaatgttctccagctcaagctaaacataagttattcattggtaatgttcctagatcctggggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="33845" stop="32602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33545" g_stop="33336" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33335" i_stop="33257" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33256" g_stop="33140" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="327" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32978" g_stop="32902" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="404" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E337892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33545" e_stop="33336"/>
          <exon e_start="33256" e_stop="33140"/>
          <exon e_start="32978" e_stop="32902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAGGTAAATTCTTTTCTTGTTCATTATCTGTTCTTTATTGGTATCCCTAATTTTACACGGATGACATGCATGAAAATGCCAGGTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAGGTACACAAAATTTTAGTTTTCTCAACTGGTTCTGTACTTATTTGTTGTCTCTCATCTTGCCTAGTTTAATCGAATCATATATTTTACAGTTTACAGTCCTAATATTCTGTTTTCTTGTTTCCAACTCTTTGGATTCTCTAACACAGATGTTTCCGTATCAGGGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGA</genome_strand>
        <mrna_strand>GAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG...............................................................................GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG.................................................................................................................................................................GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453282" ref_strand="+" ref_description="SGN-E453282 [cSTS-19-D1]">
      <seq>ctaaaattagctgtcgattttcgcttttgcttccatagttgaagaaggaaaaagggtcctcaatttcaactcaggagttgcagcgccagattatcttcctagaaatataagatgccgagaacaagggccagtgctgcagctattaaatctgaacctgagaaacctgttgagactgaagagcatgttgactttgaaggtgataatgaagaagaggaagagattgagtatgaagaggtagaagaagaggtggaaatggaagaggaagaagaagaggaggtcgaagaggaggtggaagaagaagaagaggaggaggaggaggaaaatggaagtgatggagctggtgaaggaaaggggtcagaggatgtaaaaatgaaagttgatgcagatgctgaggatatggagaaaaagcatgctgagctcctcgcccttcctcctcatggttcagaagtgtacataggtggtgttactcatgatgtttctgaggcagatgtgagggaattttgtgagacaattggggaagttacagaggtaagaataatgaaagggaaggactcaactcagaacaaaggatatgcatttgttaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="37121" stop="32898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36821" g_stop="36746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36745" i_stop="33792" i_length="2954">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.160" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33791" g_stop="33336" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="528" r_length="453" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33335" i_stop="33257" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33256" g_stop="33198" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="587" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E453282" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36821" e_stop="36746"/>
          <exon e_start="33791" e_stop="33336"/>
          <exon e_start="33256" e_stop="33198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGGGTAACAATTACTTCTGTTTTATAGTACTACTTGCTAAATTATGATTTGTGTTTGTTTGTATGCAATTCAGCATTTTTCTGCTATTTTTGAGAACCCTTTTTGCGGGTTTATCCGGATTAGATTTGTTTTGTTCTTTGCGATGCAACTGGTTATCAAATTTTTGTGGGTATACGTACATGGATCTGTTTGAAATGACCTGTGGATTGATGTTGTTGTTTTGTTTCCTTGAACAAGCTTGATTTTTGCCGCTTTAGAGGTTAAATGAGTTAGAGAGGATATATTGAGACTGTACCACTATAATGTTGGTTTTTTAAACCTAAAAGGAGAACATAGATGTGGGTTAGTTTGCTGATAGGTGAAAATTGTGACATTAGGCATTTAGTGGGACACCCAAGGGTGTGACTTAGTGGTTAATGAAGTGGATTGGGCACCATAAGGTTTCAGGTTGAATTGATATTGCTGGTGGGAGGTGGTAGGCATTCTGTGGAATAGTTGATGTGCGTTGTTAAAAAGAAATGATTAATGGTGGGTTGTTGTCATTGTTGAAAGGTACATGTTTGGAAAGAGTGCATAACTGGGTTTCCAGGATGTATAGTACCACTGAAATATTCTTGATTTTGTGTTGGAGAATCTTCTGAATTAAATAAAGCTCAATATTTTGAAATTTCTTTGAACTAGAATTTGTAATAAGCTATACCTAGCTATTCTGTTCTTAGATTGGTCTAGGAAGGTAGGAGGATGGGAATTCATTGCACCATATTAGTACTTTTCTGTTTTAGACTCTTACAGACTAATTGTTCTAAAACTGCAGTGGTACGCAGTAGACATTTTCCAAGAAATAGGTGATGTTTCAGAAAAATGTTCTGTGTTTAGCTGATGTATGGAAAGACAAAGCATATTTATTAAACATGGATGATTATCCTTGTAGCAAGTTGCATATTTTGATTAAAATAAATTATAAAAGATTGATAATAAAGCCGAAATGCTGGTTAGAGTAGTGATTTGAAGTCAACAGTTGAAATAGTTGGGTAGAAGAATGATATCCGCACATAGAGTAGGGAAGTCTGTTTTTTCCTTTTGCTGAAAAAATATTTTCAGGCAATTAAGCACTATAAAATGTTTTGCATCATACAAATATACCTAGTTTGGACTTCAAAATCACTTATTATATTATATATGTTCGAAGACCACAAAATAGTGTTCTTAACTTAGAGTCAATGCATGATCCACATGCATTATTCTCACATTATGCGCTGTCATCTCATCTATCTATCTATTTAAGGCTAAAAACTGGCTACTTCTCCACAAGGTTCTGTTTGTTCTAGCTTTCCTGTCCCTTTCACAACATAGAATGCTTCTCAGAGTCTTAAAATGTTCAATATTGCTGTATTGCATAGTTGAGAATTCACCTTAAGTTTTAGAGCTTAAGGCTAATGTTTATTACTCCCTCCGTCCCAATGTGAGGTAGTTTGACTTGGCAGTTTAAGAAAACAGTCTAAAATAAGTTATAGATGTTGGTGTAGCTGTAGATCATTTTATTAAGGGTAAAATAGGTACTTTAAAGTTAGATTGTTACTGAATATTGAAATGCGTCATTCTTTTTGGGCTGACTTAAAAGAAAAGTGAGCATATAAATTGGGACAGGGAGTATATAGAAAGTAAATATTATGAAATTTAGTAATAAACAAATCGCTGGTGAAGTAGTTATGACTGCACTATTGCGATGCTACTGAACTTGGGAGATAATAATTATGTTCTGAACATTGGAATTTTGAGCAAATGGTTTTGATTTCTAAGTAAAGAACTCTGGTTTACTGCTTCCATCTTAAAAAACAAGCTTAGTTTAATGCAGGGGAGAAGTAGTTCAGTACTTTTGAGATCCTCTTGTGTGCTTTCCACTAGAAAATATAGTTGGAGAAAGAAACTCAGTGATCACTGGCTGACATTTCTTAACCGTTCTTGACTTTGCAAATAGATTTTATTGTGTCGACAGTCAACTTAGTGACATATGCATCAATGGAATATTTGGATTTGTCTACCACCCTCCCTAAAAGAAAAGGACATCAGTGACGTGTATTTCTTAGTTATTGCCTTCAATGGTTGATCTCACTTTTAAACCGTTTATTCAAGCTCGTGGGTGTAAGCTATCAGATTCATGTACTAATTAATATTCACAGTCTAACATCATTAAGAGACCAATTAGACTTCTGCTTAAGCTAGCTATGAATTAATCTGCTTCTTGAGGTCAAGTTTTAACTCTAATGGCCAGTAAGACGACTCACGGACTGTTCTGATATTGAGCAATGGTTTTCTAAAAAGTGCAGTCGAGGTTGCTCCTCTATCAGTACATTCACTGTATATCCATTAATTTACTGCAGGGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTTTTTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTGGCCTTTCATTTTGGTTCAGCCTGTCCACATTTGTCTTCTTTCTTTTGCAAATGCTTCCGGCTTCTGTGGTTCCATCAGAGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAGGTAAATTCTTTTCTTGTTCATTATCTGTTCTTTATTGGTATCCCTAATTTTACACGGATGACATGCATGAAAATGCCAGGTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTA</genome_strand>
        <mrna_strand>CTAAAATTAGCTGTCGATTTTCGCTTTTGCTTCCATAGTTGAAGAAGGAAAAAGGGTCCTCAATTTC-AACTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCTGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGA-G--GAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGCAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTGTTACTCATGATGTTTCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG...............................................................................GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413011" ref_strand="+" ref_description="SGN-E413011 [STM-17-M17]">
      <seq>gcgccagattatcttcctagaaatataagatgccgagaacaagggccagtgctgcagctattaaatctgaacctgagaaacctgttgagactgaagagcatgttgactttgaaggtgataatgaagaagaggaagagattgagtatgaagaggtagaagaagaggtggaaatggaagaggaagaagaagaggaggtcgaagaggaggtggaagaagaagaagaggaggaggaggaggaaaatggaagtgatggagctggtgaaggaaaggggtcagaggatgtaaaaatgaaagttgatgcagatgctgaggatatggagaaaaagcatgctgagctccttgcccttcctcctcatggttcagaagtgtacataggtggtgttactcatgatgtttctgaggcagatgtgagggaattttgtgagacaattggggaagttacagaggtaagaataatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="34084" stop="33029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33784" g_stop="33336" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33335" i_stop="33257" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33256" g_stop="33242" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="461" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E413011" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33784" e_stop="33336"/>
          <exon e_start="33256" e_stop="33242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAGGTAAATTCTTTTCTTGTTCATTATCTGTTCTTTATTGGTATCCCTAATTTTACACGGATGACATGCATGAAAATGCCAGGTAAGAATAATGAAA</genome_strand>
        <mrna_strand>GCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCTGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGA-G--GAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGCAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTTGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTGTTACTCATGATGTTTCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG...............................................................................GTAAGAATAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424836" ref_strand="+" ref_description="SGN-E424836 [STM-44-M7]">
      <seq>ctaaaattagctgtcgattttcgcttttgcttccatagttgaagaaggaaaaagggtcctcaatttcaactcaggagttgcagcgccagattatcttcctagaaatataagatgccgagaacaagggccagtgctgcagctattaaatctgaacctgagaaacctgttgagactgaagagcatgttgactttgaaggtgataatgaagaagaggaagagattgagtatgaagaggtagaagaagaggtggaaatggaagaggaagaagaagaggaggtcgaagaggaggtggaagaagaagaagaggaggaggaggaggaaaatggaagtgatggagctggtgaaggaaaggggtcagaggatgtaaaaatgaaagttgatgcagatgctgaggatatggagaaaaagcatgctgagctcctcgcccttcctcctcatggttcagaagtgtacataggtggtgttactcatgatgtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="37121" stop="33083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36821" g_stop="36746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36745" i_stop="33792" i_length="2954">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.160" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33791" g_stop="33383" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="481" r_length="406" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E424836" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36821" e_stop="36746"/>
          <exon e_start="33791" e_stop="33383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGGGTAACAATTACTTCTGTTTTATAGTACTACTTGCTAAATTATGATTTGTGTTTGTTTGTATGCAATTCAGCATTTTTCTGCTATTTTTGAGAACCCTTTTTGCGGGTTTATCCGGATTAGATTTGTTTTGTTCTTTGCGATGCAACTGGTTATCAAATTTTTGTGGGTATACGTACATGGATCTGTTTGAAATGACCTGTGGATTGATGTTGTTGTTTTGTTTCCTTGAACAAGCTTGATTTTTGCCGCTTTAGAGGTTAAATGAGTTAGAGAGGATATATTGAGACTGTACCACTATAATGTTGGTTTTTTAAACCTAAAAGGAGAACATAGATGTGGGTTAGTTTGCTGATAGGTGAAAATTGTGACATTAGGCATTTAGTGGGACACCCAAGGGTGTGACTTAGTGGTTAATGAAGTGGATTGGGCACCATAAGGTTTCAGGTTGAATTGATATTGCTGGTGGGAGGTGGTAGGCATTCTGTGGAATAGTTGATGTGCGTTGTTAAAAAGAAATGATTAATGGTGGGTTGTTGTCATTGTTGAAAGGTACATGTTTGGAAAGAGTGCATAACTGGGTTTCCAGGATGTATAGTACCACTGAAATATTCTTGATTTTGTGTTGGAGAATCTTCTGAATTAAATAAAGCTCAATATTTTGAAATTTCTTTGAACTAGAATTTGTAATAAGCTATACCTAGCTATTCTGTTCTTAGATTGGTCTAGGAAGGTAGGAGGATGGGAATTCATTGCACCATATTAGTACTTTTCTGTTTTAGACTCTTACAGACTAATTGTTCTAAAACTGCAGTGGTACGCAGTAGACATTTTCCAAGAAATAGGTGATGTTTCAGAAAAATGTTCTGTGTTTAGCTGATGTATGGAAAGACAAAGCATATTTATTAAACATGGATGATTATCCTTGTAGCAAGTTGCATATTTTGATTAAAATAAATTATAAAAGATTGATAATAAAGCCGAAATGCTGGTTAGAGTAGTGATTTGAAGTCAACAGTTGAAATAGTTGGGTAGAAGAATGATATCCGCACATAGAGTAGGGAAGTCTGTTTTTTCCTTTTGCTGAAAAAATATTTTCAGGCAATTAAGCACTATAAAATGTTTTGCATCATACAAATATACCTAGTTTGGACTTCAAAATCACTTATTATATTATATATGTTCGAAGACCACAAAATAGTGTTCTTAACTTAGAGTCAATGCATGATCCACATGCATTATTCTCACATTATGCGCTGTCATCTCATCTATCTATCTATTTAAGGCTAAAAACTGGCTACTTCTCCACAAGGTTCTGTTTGTTCTAGCTTTCCTGTCCCTTTCACAACATAGAATGCTTCTCAGAGTCTTAAAATGTTCAATATTGCTGTATTGCATAGTTGAGAATTCACCTTAAGTTTTAGAGCTTAAGGCTAATGTTTATTACTCCCTCCGTCCCAATGTGAGGTAGTTTGACTTGGCAGTTTAAGAAAACAGTCTAAAATAAGTTATAGATGTTGGTGTAGCTGTAGATCATTTTATTAAGGGTAAAATAGGTACTTTAAAGTTAGATTGTTACTGAATATTGAAATGCGTCATTCTTTTTGGGCTGACTTAAAAGAAAAGTGAGCATATAAATTGGGACAGGGAGTATATAGAAAGTAAATATTATGAAATTTAGTAATAAACAAATCGCTGGTGAAGTAGTTATGACTGCACTATTGCGATGCTACTGAACTTGGGAGATAATAATTATGTTCTGAACATTGGAATTTTGAGCAAATGGTTTTGATTTCTAAGTAAAGAACTCTGGTTTACTGCTTCCATCTTAAAAAACAAGCTTAGTTTAATGCAGGGGAGAAGTAGTTCAGTACTTTTGAGATCCTCTTGTGTGCTTTCCACTAGAAAATATAGTTGGAGAAAGAAACTCAGTGATCACTGGCTGACATTTCTTAACCGTTCTTGACTTTGCAAATAGATTTTATTGTGTCGACAGTCAACTTAGTGACATATGCATCAATGGAATATTTGGATTTGTCTACCACCCTCCCTAAAAGAAAAGGACATCAGTGACGTGTATTTCTTAGTTATTGCCTTCAATGGTTGATCTCACTTTTAAACCGTTTATTCAAGCTCGTGGGTGTAAGCTATCAGATTCATGTACTAATTAATATTCACAGTCTAACATCATTAAGAGACCAATTAGACTTCTGCTTAAGCTAGCTATGAATTAATCTGCTTCTTGAGGTCAAGTTTTAACTCTAATGGCCAGTAAGACGACTCACGGACTGTTCTGATATTGAGCAATGGTTTTCTAAAAAGTGCAGTCGAGGTTGCTCCTCTATCAGTACATTCACTGTATATCCATTAATTTACTGCAGGGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTTTTTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTGGCCTTTCATTTTGGTTCAGCCTGTCCACATTTGTCTTCTTTCTTTTGCAAATGCTTCCGGCTTCTGTGGTTCCATCAGAGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTG</genome_strand>
        <mrna_strand>CTAAAATTAGCTGTCGATTTTCGCTTTTGCTTCCATAGTTGAAGAAGGAAAAAGGGTCCTCAATTTC-AACTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCTGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGA-G--GAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGCAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTGTTACTCATGATGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367421" ref_strand="+" ref_description="SGN-E367421 [cLPT-7-N21]">
      <seq>gagagaaagaagaattttactttcagagaaactaaaatcagctgtcgattatcgcttttgcttccgtagttgaagaaggaaaaagggttttcaatttctatctcaagagttgcagcgccagattatcttcatagaaatataagatgccgagaacaagggccagtgttgcagctgttaaatctgaacccgagaaacctgttgagactgaagagcatgttgactttgaaggtgataatgaagaagaggaagagattgagtatgaagaggtagaagaagaggtggaaatggaagaggaagaagaagaggaggtcgaagaggaggtggaagaagaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="37152" stop="33262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36852" g_stop="36746" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36745" i_stop="33792" i_length="2954">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.160" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33791" g_stop="33562" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="337" r_length="230" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E367421" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36852" e_stop="36746"/>
          <exon e_start="33791" e_stop="33562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGGGTAACAATTACTTCTGTTTTATAGTACTACTTGCTAAATTATGATTTGTGTTTGTTTGTATGCAATTCAGCATTTTTCTGCTATTTTTGAGAACCCTTTTTGCGGGTTTATCCGGATTAGATTTGTTTTGTTCTTTGCGATGCAACTGGTTATCAAATTTTTGTGGGTATACGTACATGGATCTGTTTGAAATGACCTGTGGATTGATGTTGTTGTTTTGTTTCCTTGAACAAGCTTGATTTTTGCCGCTTTAGAGGTTAAATGAGTTAGAGAGGATATATTGAGACTGTACCACTATAATGTTGGTTTTTTAAACCTAAAAGGAGAACATAGATGTGGGTTAGTTTGCTGATAGGTGAAAATTGTGACATTAGGCATTTAGTGGGACACCCAAGGGTGTGACTTAGTGGTTAATGAAGTGGATTGGGCACCATAAGGTTTCAGGTTGAATTGATATTGCTGGTGGGAGGTGGTAGGCATTCTGTGGAATAGTTGATGTGCGTTGTTAAAAAGAAATGATTAATGGTGGGTTGTTGTCATTGTTGAAAGGTACATGTTTGGAAAGAGTGCATAACTGGGTTTCCAGGATGTATAGTACCACTGAAATATTCTTGATTTTGTGTTGGAGAATCTTCTGAATTAAATAAAGCTCAATATTTTGAAATTTCTTTGAACTAGAATTTGTAATAAGCTATACCTAGCTATTCTGTTCTTAGATTGGTCTAGGAAGGTAGGAGGATGGGAATTCATTGCACCATATTAGTACTTTTCTGTTTTAGACTCTTACAGACTAATTGTTCTAAAACTGCAGTGGTACGCAGTAGACATTTTCCAAGAAATAGGTGATGTTTCAGAAAAATGTTCTGTGTTTAGCTGATGTATGGAAAGACAAAGCATATTTATTAAACATGGATGATTATCCTTGTAGCAAGTTGCATATTTTGATTAAAATAAATTATAAAAGATTGATAATAAAGCCGAAATGCTGGTTAGAGTAGTGATTTGAAGTCAACAGTTGAAATAGTTGGGTAGAAGAATGATATCCGCACATAGAGTAGGGAAGTCTGTTTTTTCCTTTTGCTGAAAAAATATTTTCAGGCAATTAAGCACTATAAAATGTTTTGCATCATACAAATATACCTAGTTTGGACTTCAAAATCACTTATTATATTATATATGTTCGAAGACCACAAAATAGTGTTCTTAACTTAGAGTCAATGCATGATCCACATGCATTATTCTCACATTATGCGCTGTCATCTCATCTATCTATCTATTTAAGGCTAAAAACTGGCTACTTCTCCACAAGGTTCTGTTTGTTCTAGCTTTCCTGTCCCTTTCACAACATAGAATGCTTCTCAGAGTCTTAAAATGTTCAATATTGCTGTATTGCATAGTTGAGAATTCACCTTAAGTTTTAGAGCTTAAGGCTAATGTTTATTACTCCCTCCGTCCCAATGTGAGGTAGTTTGACTTGGCAGTTTAAGAAAACAGTCTAAAATAAGTTATAGATGTTGGTGTAGCTGTAGATCATTTTATTAAGGGTAAAATAGGTACTTTAAAGTTAGATTGTTACTGAATATTGAAATGCGTCATTCTTTTTGGGCTGACTTAAAAGAAAAGTGAGCATATAAATTGGGACAGGGAGTATATAGAAAGTAAATATTATGAAATTTAGTAATAAACAAATCGCTGGTGAAGTAGTTATGACTGCACTATTGCGATGCTACTGAACTTGGGAGATAATAATTATGTTCTGAACATTGGAATTTTGAGCAAATGGTTTTGATTTCTAAGTAAAGAACTCTGGTTTACTGCTTCCATCTTAAAAAACAAGCTTAGTTTAATGCAGGGGAGAAGTAGTTCAGTACTTTTGAGATCCTCTTGTGTGCTTTCCACTAGAAAATATAGTTGGAGAAAGAAACTCAGTGATCACTGGCTGACATTTCTTAACCGTTCTTGACTTTGCAAATAGATTTTATTGTGTCGACAGTCAACTTAGTGACATATGCATCAATGGAATATTTGGATTTGTCTACCACCCTCCCTAAAAGAAAAGGACATCAGTGACGTGTATTTCTTAGTTATTGCCTTCAATGGTTGATCTCACTTTTAAACCGTTTATTCAAGCTCGTGGGTGTAAGCTATCAGATTCATGTACTAATTAATATTCACAGTCTAACATCATTAAGAGACCAATTAGACTTCTGCTTAAGCTAGCTATGAATTAATCTGCTTCTTGAGGTCAAGTTTTAACTCTAATGGCCAGTAAGACGACTCACGGACTGTTCTGATATTGAGCAATGGTTTTCTAAAAAGTGCAGTCGAGGTTGCTCCTCTATCAGTACATTCACTGTATATCCATTAATTTACTGCAGGGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTTTTTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTGGCCTTTCATTTTGGTTCAGCCTGTCCACATTTGTCTTCTTTCTTTTGCAAATGCTTCCGGCTTCTGTGGTTCCATCAGAGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGA</genome_strand>
        <mrna_strand>GAGAGAAAGAAGAATTTTACTTTCAGAGAAACTAAAATCAGCTGTCGATTATCGCTTTTGCTTCCGTAGTTGAAGAAGGAAAAAGGGTTTTCAATTTCTATCTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAGCGCCAGATTATCTTCATAGAAATATAAGATGCCGAGAACAAGGGCCAGTGTTGCAGCTGTTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313741" ref_strand="+" ref_description="SGN-E313741 [cTOA-17-M18]">
      <seq>cccacaaagcgagagagagagagaagaaatttactttcagagaaactaaaattagctgccgattatcgctattgcttcaatcgttgaagaacgaaaaagggttctcaatttctatctcaggagttgcagcgccagattatcttcctagaaatataagatgcccagaacaagggccagtgctgcagctattaaatctgaacccgagaaacctgttgagactgaagagcatgttgactttgaaggtgataatgaagaagaggaagagattgagtatgaagaggtagaagaagaggtggaaatggaagaggaagaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="37166" stop="33295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36866" g_stop="36746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36745" i_stop="33792" i_length="2954">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.160" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33791" g_stop="33595" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="318" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E313741" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36866" e_stop="36746"/>
          <exon e_start="33791" e_stop="33595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACAAAGCGAGAGAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGGGTAACAATTACTTCTGTTTTATAGTACTACTTGCTAAATTATGATTTGTGTTTGTTTGTATGCAATTCAGCATTTTTCTGCTATTTTTGAGAACCCTTTTTGCGGGTTTATCCGGATTAGATTTGTTTTGTTCTTTGCGATGCAACTGGTTATCAAATTTTTGTGGGTATACGTACATGGATCTGTTTGAAATGACCTGTGGATTGATGTTGTTGTTTTGTTTCCTTGAACAAGCTTGATTTTTGCCGCTTTAGAGGTTAAATGAGTTAGAGAGGATATATTGAGACTGTACCACTATAATGTTGGTTTTTTAAACCTAAAAGGAGAACATAGATGTGGGTTAGTTTGCTGATAGGTGAAAATTGTGACATTAGGCATTTAGTGGGACACCCAAGGGTGTGACTTAGTGGTTAATGAAGTGGATTGGGCACCATAAGGTTTCAGGTTGAATTGATATTGCTGGTGGGAGGTGGTAGGCATTCTGTGGAATAGTTGATGTGCGTTGTTAAAAAGAAATGATTAATGGTGGGTTGTTGTCATTGTTGAAAGGTACATGTTTGGAAAGAGTGCATAACTGGGTTTCCAGGATGTATAGTACCACTGAAATATTCTTGATTTTGTGTTGGAGAATCTTCTGAATTAAATAAAGCTCAATATTTTGAAATTTCTTTGAACTAGAATTTGTAATAAGCTATACCTAGCTATTCTGTTCTTAGATTGGTCTAGGAAGGTAGGAGGATGGGAATTCATTGCACCATATTAGTACTTTTCTGTTTTAGACTCTTACAGACTAATTGTTCTAAAACTGCAGTGGTACGCAGTAGACATTTTCCAAGAAATAGGTGATGTTTCAGAAAAATGTTCTGTGTTTAGCTGATGTATGGAAAGACAAAGCATATTTATTAAACATGGATGATTATCCTTGTAGCAAGTTGCATATTTTGATTAAAATAAATTATAAAAGATTGATAATAAAGCCGAAATGCTGGTTAGAGTAGTGATTTGAAGTCAACAGTTGAAATAGTTGGGTAGAAGAATGATATCCGCACATAGAGTAGGGAAGTCTGTTTTTTCCTTTTGCTGAAAAAATATTTTCAGGCAATTAAGCACTATAAAATGTTTTGCATCATACAAATATACCTAGTTTGGACTTCAAAATCACTTATTATATTATATATGTTCGAAGACCACAAAATAGTGTTCTTAACTTAGAGTCAATGCATGATCCACATGCATTATTCTCACATTATGCGCTGTCATCTCATCTATCTATCTATTTAAGGCTAAAAACTGGCTACTTCTCCACAAGGTTCTGTTTGTTCTAGCTTTCCTGTCCCTTTCACAACATAGAATGCTTCTCAGAGTCTTAAAATGTTCAATATTGCTGTATTGCATAGTTGAGAATTCACCTTAAGTTTTAGAGCTTAAGGCTAATGTTTATTACTCCCTCCGTCCCAATGTGAGGTAGTTTGACTTGGCAGTTTAAGAAAACAGTCTAAAATAAGTTATAGATGTTGGTGTAGCTGTAGATCATTTTATTAAGGGTAAAATAGGTACTTTAAAGTTAGATTGTTACTGAATATTGAAATGCGTCATTCTTTTTGGGCTGACTTAAAAGAAAAGTGAGCATATAAATTGGGACAGGGAGTATATAGAAAGTAAATATTATGAAATTTAGTAATAAACAAATCGCTGGTGAAGTAGTTATGACTGCACTATTGCGATGCTACTGAACTTGGGAGATAATAATTATGTTCTGAACATTGGAATTTTGAGCAAATGGTTTTGATTTCTAAGTAAAGAACTCTGGTTTACTGCTTCCATCTTAAAAAACAAGCTTAGTTTAATGCAGGGGAGAAGTAGTTCAGTACTTTTGAGATCCTCTTGTGTGCTTTCCACTAGAAAATATAGTTGGAGAAAGAAACTCAGTGATCACTGGCTGACATTTCTTAACCGTTCTTGACTTTGCAAATAGATTTTATTGTGTCGACAGTCAACTTAGTGACATATGCATCAATGGAATATTTGGATTTGTCTACCACCCTCCCTAAAAGAAAAGGACATCAGTGACGTGTATTTCTTAGTTATTGCCTTCAATGGTTGATCTCACTTTTAAACCGTTTATTCAAGCTCGTGGGTGTAAGCTATCAGATTCATGTACTAATTAATATTCACAGTCTAACATCATTAAGAGACCAATTAGACTTCTGCTTAAGCTAGCTATGAATTAATCTGCTTCTTGAGGTCAAGTTTTAACTCTAATGGCCAGTAAGACGACTCACGGACTGTTCTGATATTGAGCAATGGTTTTCTAAAAAGTGCAGTCGAGGTTGCTCCTCTATCAGTACATTCACTGTATATCCATTAATTTACTGCAGGGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTTTTTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTGGCCTTTCATTTTGGTTCAGCCTGTCCACATTTGTCTTCTTTCTTTTGCAAATGCTTCCGGCTTCTGTGGTTCCATCAGAGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGA</genome_strand>
        <mrna_strand>CCCACAAAGCGAGAGAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGCCGATTATCGCTATTGCTTCAATCGTTGAAGAACGAAAAAGGGTTCTCAATTTCTATCTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCCAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560847" ref_strand="+" ref_description="SGN-E560847 [20566]">
      <seq>gaaaaagcaaaaaaaaaaatccccaattcaaaaccctaaccaatctagggtttttttttatatatataataccccagagagagagagagagcagaaatttactttcagagaaactaaaattagctgtcgattttcgcttttgcttccatagttgaagaaggaaaaagggtcctcaatttcaactcaggggaggtctcacttacagaatgggacatgtattttggaactggaattatgttttatggggaggggtctggtgggatctaaaccttgatgaacatcccattaagcattctattttccctgctattgcctggggatagattaagcctttcataatctcctctcctctctctttttctctttccttgtattcttttatttttctttcttttccttgttccattgttatgaatgcattggtcctaattatagtttaaactaaaggctgactttccttcagaaatcaatcagtatctacctattatggaattcattggttcattgtttttgcacctgatggaggatattaccctcttgatagtcattcagtattcttctcttgcctgtctttgtttgtattggtaaaatttagtcagccttttactgaaaattgacattggaactccttggccatttctcatggaacaagttcaattgagatattctttactctggaaatcctcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="37228" stop="33568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36929" g_stop="36746" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36745" i_stop="34368" i_length="2378">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34367" g_stop="33870" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="689" r_length="501" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E560847" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36929" e_stop="36746"/>
          <exon e_start="34367" e_stop="33870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAATAAAAATAAAATCCCCAAATCAAAACCCTAACCAATCTAGGG---T-TTATATA-ATACCCCCACAAAGCGAGAGAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGGGTAACAATTACTTCTGTTTTATAGTACTACTTGCTAAATTATGATTTGTGTTTGTTTGTATGCAATTCAGCATTTTTCTGCTATTTTTGAGAACCCTTTTTGCGGGTTTATCCGGATTAGATTTGTTTTGTTCTTTGCGATGCAACTGGTTATCAAATTTTTGTGGGTATACGTACATGGATCTGTTTGAAATGACCTGTGGATTGATGTTGTTGTTTTGTTTCCTTGAACAAGCTTGATTTTTGCCGCTTTAGAGGTTAAATGAGTTAGAGAGGATATATTGAGACTGTACCACTATAATGTTGGTTTTTTAAACCTAAAAGGAGAACATAGATGTGGGTTAGTTTGCTGATAGGTGAAAATTGTGACATTAGGCATTTAGTGGGACACCCAAGGGTGTGACTTAGTGGTTAATGAAGTGGATTGGGCACCATAAGGTTTCAGGTTGAATTGATATTGCTGGTGGGAGGTGGTAGGCATTCTGTGGAATAGTTGATGTGCGTTGTTAAAAAGAAATGATTAATGGTGGGTTGTTGTCATTGTTGAAAGGTACATGTTTGGAAAGAGTGCATAACTGGGTTTCCAGGATGTATAGTACCACTGAAATATTCTTGATTTTGTGTTGGAGAATCTTCTGAATTAAATAAAGCTCAATATTTTGAAATTTCTTTGAACTAGAATTTGTAATAAGCTATACCTAGCTATTCTGTTCTTAGATTGGTCTAGGAAGGTAGGAGGATGGGAATTCATTGCACCATATTAGTACTTTTCTGTTTTAGACTCTTACAGACTAATTGTTCTAAAACTGCAGTGGTACGCAGTAGACATTTTCCAAGAAATAGGTGATGTTTCAGAAAAATGTTCTGTGTTTAGCTGATGTATGGAAAGACAAAGCATATTTATTAAACATGGATGATTATCCTTGTAGCAAGTTGCATATTTTGATTAAAATAAATTATAAAAGATTGATAATAAAGCCGAAATGCTGGTTAGAGTAGTGATTTGAAGTCAACAGTTGAAATAGTTGGGTAGAAGAATGATATCCGCACATAGAGTAGGGAAGTCTGTTTTTTCCTTTTGCTGAAAAAATATTTTCAGGCAATTAAGCACTATAAAATGTTTTGCATCATACAAATATACCTAGTTTGGACTTCAAAATCACTTATTATATTATATATGTTCGAAGACCACAAAATAGTGTTCTTAACTTAGAGTCAATGCATGATCCACATGCATTATTCTCACATTATGCGCTGTCATCTCATCTATCTATCTATTTAAGGCTAAAAACTGGCTACTTCTCCACAAGGTTCTGTTTGTTCTAGCTTTCCTGTCCCTTTCACAACATAGAATGCTTCTCAGAGTCTTAAAATGTTCAATATTGCTGTATTGCATAGTTGAGAATTCACCTTAAGTTTTAGAGCTTAAGGCTAATGTTTATTACTCCCTCCGTCCCAATGTGAGGTAGTTTGACTTGGCAGTTTAAGAAAACAGTCTAAAATAAGTTATAGATGTTGGTGTAGCTGTAGATCATTTTATTAAGGGTAAAATAGGTACTTTAAAGTTAGATTGTTACTGAATATTGAAATGCGTCATTCTTTTTGGGCTGACTTAAAAGAAAAGTGAGCATATAAATTGGGACAGGGAGTATATAGAAAGTAAATATTATGAAATTTAGTAATAAACAAATCGCTGGTGAAGTAGTTATGACTGCACTATTGCGATGCTACTGAACTTGGGAGATAATAATTATGTTCTGAACATTGGAATTTTGAGCAAATGGTTTTGATTTCTAAGTAAAGAACTCTGGTTTACTGCTTCCATCTTAAAAAACAAGCTTAGTTTAATGCAGGGGAGAAGTAGTTCAGTACTTTTGAGATCCTCTTGTGTGCTTTCCACTAGAAAATATAGTTGGAGAAAGAAACTCAGTGATCACTGGCTGACATTTCTTAACCGTTCTTGACTTTGCAAATAGATTTTATTGTGTCGACAGTCAACTTAGTGACATATGCATCAATGGAATATTTGGATTTGTCTACCACCCTCCCTAAAAGAAAAGGACATCAGTGACGTGTATTTCTTAGTTATTGCCTTCAATGGTTGATCTCACTTTTAAACCGTTTATTCAAGCTCGTGGGTGTAAGCTATCAGATTCATGTACTAATTAATATTCACAGTCTAACATCATTAAGAGACCAATTAGACTTCTGCTTAAGCTAGCTATGAATTAATCTGCTTCTTGAGGTCAAGTTTTAACTCTAATGGCCAGTAAGACGACTCACGGACTGTTCTGATATTGAGCAATGGTTTTCTAAAAAGTGCAGTCGAGGTTGCTCCTCTATCAGTACATTCACTGTATATCCATTAATTTACTGCAGGGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCT-C-CTCTC-TTTT-TCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTG</genome_strand>
        <mrna_strand>GAAAAAGCAAAAAAAAAAATCCCCAATTCAAAACCCTAACCAATCTAGGGTTTTTTTTTATATATATAATACCCCAGAGAGAGAGAGAGAGCAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTTTCGCTTTTGCTTCCATAGTTGAAGAAGGAAAAAGGGTCCTCAATTTC-AACTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCA-TTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTCTTTTTCTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAACTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTATTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTATTGGTAAAATTTAGTCAGCCTTTTACTGAAAATTGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559048" ref_strand="+" ref_description="SGN-E559048 [18484]">
      <seq>gggaatatagaaaaagcaaaaaaaaaaatccccaaatcaaaaccctaaccaatctaggtttttttttatatatataataccccagagagagagagagagcagaaatttactttcagagaaactaaaattagctgtcgattttcgcttttgcttccatagttgaagaaggaaaaagggtcctcaatttcaactcaggggaggtctcacttacagaatgggacatgtattttggaactggaattatgttttatggggaggggtctggtgggatctaaaccttgatgaacatcccattaagcattctattttccctgctattgcctggggatagattaagcctttcataatctcctctcctctctctttttctctttccttgtattcttttatttttctttcttttccttgttccattgttatgaatgcattggtcctaattatagtttaaactaaaggctgactttccttcagaaatcaatcagtatctacctattatggaattcattggttcattgtttttgcacctgatggaggatattaccctcttgatagtcattcagtattcttctcttgcctgtctttgtttgtattggtaaaatttagtcagccttttactgaaaattgacattggaactccttgggcatttctcatggaacaagttcaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="37228" stop="33597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36939" g_stop="36746" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.820"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36745" i_stop="34368" i_length="2378">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34367" g_stop="33897" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="670" r_length="474" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E559048" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36939" e_stop="36746"/>
          <exon e_start="34367" e_stop="33897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACAATAGCAAAAAAATAAAAATAAAATCCCCAAATCAAAACCCTAACCAATCTAGG-GT--TTATATA-ATACCCCCACAAAGCGAGAGAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGGGTAACAATTACTTCTGTTTTATAGTACTACTTGCTAAATTATGATTTGTGTTTGTTTGTATGCAATTCAGCATTTTTCTGCTATTTTTGAGAACCCTTTTTGCGGGTTTATCCGGATTAGATTTGTTTTGTTCTTTGCGATGCAACTGGTTATCAAATTTTTGTGGGTATACGTACATGGATCTGTTTGAAATGACCTGTGGATTGATGTTGTTGTTTTGTTTCCTTGAACAAGCTTGATTTTTGCCGCTTTAGAGGTTAAATGAGTTAGAGAGGATATATTGAGACTGTACCACTATAATGTTGGTTTTTTAAACCTAAAAGGAGAACATAGATGTGGGTTAGTTTGCTGATAGGTGAAAATTGTGACATTAGGCATTTAGTGGGACACCCAAGGGTGTGACTTAGTGGTTAATGAAGTGGATTGGGCACCATAAGGTTTCAGGTTGAATTGATATTGCTGGTGGGAGGTGGTAGGCATTCTGTGGAATAGTTGATGTGCGTTGTTAAAAAGAAATGATTAATGGTGGGTTGTTGTCATTGTTGAAAGGTACATGTTTGGAAAGAGTGCATAACTGGGTTTCCAGGATGTATAGTACCACTGAAATATTCTTGATTTTGTGTTGGAGAATCTTCTGAATTAAATAAAGCTCAATATTTTGAAATTTCTTTGAACTAGAATTTGTAATAAGCTATACCTAGCTATTCTGTTCTTAGATTGGTCTAGGAAGGTAGGAGGATGGGAATTCATTGCACCATATTAGTACTTTTCTGTTTTAGACTCTTACAGACTAATTGTTCTAAAACTGCAGTGGTACGCAGTAGACATTTTCCAAGAAATAGGTGATGTTTCAGAAAAATGTTCTGTGTTTAGCTGATGTATGGAAAGACAAAGCATATTTATTAAACATGGATGATTATCCTTGTAGCAAGTTGCATATTTTGATTAAAATAAATTATAAAAGATTGATAATAAAGCCGAAATGCTGGTTAGAGTAGTGATTTGAAGTCAACAGTTGAAATAGTTGGGTAGAAGAATGATATCCGCACATAGAGTAGGGAAGTCTGTTTTTTCCTTTTGCTGAAAAAATATTTTCAGGCAATTAAGCACTATAAAATGTTTTGCATCATACAAATATACCTAGTTTGGACTTCAAAATCACTTATTATATTATATATGTTCGAAGACCACAAAATAGTGTTCTTAACTTAGAGTCAATGCATGATCCACATGCATTATTCTCACATTATGCGCTGTCATCTCATCTATCTATCTATTTAAGGCTAAAAACTGGCTACTTCTCCACAAGGTTCTGTTTGTTCTAGCTTTCCTGTCCCTTTCACAACATAGAATGCTTCTCAGAGTCTTAAAATGTTCAATATTGCTGTATTGCATAGTTGAGAATTCACCTTAAGTTTTAGAGCTTAAGGCTAATGTTTATTACTCCCTCCGTCCCAATGTGAGGTAGTTTGACTTGGCAGTTTAAGAAAACAGTCTAAAATAAGTTATAGATGTTGGTGTAGCTGTAGATCATTTTATTAAGGGTAAAATAGGTACTTTAAAGTTAGATTGTTACTGAATATTGAAATGCGTCATTCTTTTTGGGCTGACTTAAAAGAAAAGTGAGCATATAAATTGGGACAGGGAGTATATAGAAAGTAAATATTATGAAATTTAGTAATAAACAAATCGCTGGTGAAGTAGTTATGACTGCACTATTGCGATGCTACTGAACTTGGGAGATAATAATTATGTTCTGAACATTGGAATTTTGAGCAAATGGTTTTGATTTCTAAGTAAAGAACTCTGGTTTACTGCTTCCATCTTAAAAAACAAGCTTAGTTTAATGCAGGGGAGAAGTAGTTCAGTACTTTTGAGATCCTCTTGTGTGCTTTCCACTAGAAAATATAGTTGGAGAAAGAAACTCAGTGATCACTGGCTGACATTTCTTAACCGTTCTTGACTTTGCAAATAGATTTTATTGTGTCGACAGTCAACTTAGTGACATATGCATCAATGGAATATTTGGATTTGTCTACCACCCTCCCTAAAAGAAAAGGACATCAGTGACGTGTATTTCTTAGTTATTGCCTTCAATGGTTGATCTCACTTTTAAACCGTTTATTCAAGCTCGTGGGTGTAAGCTATCAGATTCATGTACTAATTAATATTCACAGTCTAACATCATTAAGAGACCAATTAGACTTCTGCTTAAGCTAGCTATGAATTAATCTGCTTCTTGAGGTCAAGTTTTAACTCTAATGGCCAGTAAGACGACTCACGGACTGTTCTGATATTGAGCAATGGTTTTCTAAAAAGTGCAGTCGAGGTTGCTCCTCTATCAGTACATTCACTGTATATCCATTAATTTACTGCAGGGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCT-C-CTCTC-TTTT-TCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAG</genome_strand>
        <mrna_strand>GGGAATATAGAAAAAGCAAAAAAA-AAAATCCCCAAATCAAAACCCTAACCAATCTAGGTTTTTTTTTATATATATAATACCCCAGAGAGAGAGAGAGAGCAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTTTCGCTTTTGCTTCCATAGTTGAAGAAGGAAAAAGGGTCCTCAATTTC-AACTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCA-TTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTCTTTTTCTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAACTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTATTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTATTGGTAAAATTTAGTCAGCCTTTTACTGAAAATTGACATTGGAACTCCTTGGGCATTTCTCATGGAACAAGTTCAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390687" ref_strand="+" ref_description="SGN-E390687 [TUS-46-H18]">
      <seq>gtatttggtgccctaaatcagaattcaaaaaaattctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccataagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccgtcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39836" stop="43090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40136" g_stop="40301" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="348" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="427" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="511" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42790" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="671" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E390687" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40136" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAG</genome_strand>
        <mrna_strand>GTATTTGGTGCCCTAAATCAGAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCATAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCGTCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397511" ref_strand="+" ref_description="SGN-E397511 [TUS-45-J22]">
      <seq>gtatttggtgccctaaatcaaaattcaaaaaaattctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39836" stop="43060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40136" g_stop="40301" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="348" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="427" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="511" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42760" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="641" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40136" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCG</genome_strand>
        <mrna_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397720" ref_strand="+" ref_description="SGN-E397720 [TUS-46-J19]">
      <seq>gtatttggtgccctaaatcaaaattcaaaaaaattctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggtggtcagttgtagagcgcaagaccccgatgcgttggtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39836" stop="42393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40136" g_stop="40301" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="348" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="427" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42093" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="483" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397720" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40136" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTT</genome_strand>
        <mrna_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAAGACCCCGATGCGTTGGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397711" ref_strand="+" ref_description="SGN-E397711 [TUS-46-H19]">
      <seq>gtatttggtgccctaaatcaaaattcaaaaaaattctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcagctggtaaatcatatgaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39836" stop="42354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40136" g_stop="40301" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="348" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="427" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42054" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="444" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40136" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTG</genome_strand>
        <mrna_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCAGCTG................................................................................................................................................................................................GTAAATCATATGAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397615" ref_strand="+" ref_description="SGN-E397615 [TUS-46-I21]">
      <seq>gtatttggtgccctaaatcaaaattcaaaaaaattctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcaaactctactgagctcaggcttatacagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39836" stop="41724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40136" g_stop="40301" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41424" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="336" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397615" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40136" e_stop="40301"/>
          <exon e_start="41255" e_stop="41424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGG</genome_strand>
        <mrna_strand>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAAACTCTACTGAGCTCAGGCTTATACAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282587" ref_strand="+" ref_description="SGN-E282587 [cLER-15-C1]">
      <seq>tatttggtgccctaaatcaaaattcaaaaaaattctattcatcggttcactttggtcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcagaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggcggtcagttgtagagcgcacgaccccgatgcgttggtctttctatcatctgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39837" stop="42408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40137" g_stop="40301" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="347" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="426" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42108" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="497" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E282587" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40137" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCT</genome_strand>
        <mrna_strand>TATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTGGTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAGAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGCGGTCAGTTGTAGAGCGCACGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370528" ref_strand="+" ref_description="SGN-E370528 [TUS-29-O1]">
      <seq>tatttggtgccctaaatcaaaattcaaaaaaattctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgtatgtactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39837" stop="42151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40137" g_stop="40301" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="347" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="426" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42051" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="440" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E370528" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40137" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAG</genome_strand>
        <mrna_strand>TATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGTATGTACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378737" ref_strand="+" ref_description="SGN-E378737 [TUS-46-I21]">
      <seq>gccctaaatcaaaattcaaaaaaattctcttcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttncagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaccaccatcagaatttgaggaggtcaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39845" stop="41668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40145" g_stop="40301" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41368" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="270" r_length="113" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E378737" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40145" e_stop="40301"/>
          <exon e_start="41255" e_stop="41368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGG</genome_strand>
        <mrna_strand>GCCCTAAATCAAAATTCAAAAAAATTCTCTTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTNCAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTAC-AACCACCATCAGAATTTGAGGAGGTCAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210651" ref_strand="+" ref_description="SGN-E210651 [cLEC-68-B11]">
      <seq>ttctattcatcggttcacttttttcaccctcaccgcgcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgncgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcagattcaggcaaaaagtggtcgtagtgcattaacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39869" stop="43223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40169" g_stop="40301" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="315" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="394" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="478" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42923" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="772" r_length="294" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E210651" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40169" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATG-CGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGC-AAAAGTGGTCGTAGTGCATTAACCTCT</genome_strand>
        <mrna_strand>TTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGNCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTC-AGATTCAGGCAAAAAGTGGTCGTAGTGCATTAACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400496" ref_strand="+" ref_description="SGN-E400496 [cSTC-14-G23]">
      <seq>atctgttcatcgtttcacttttgtttactctcaccgcacagcaaccgtcggcgtccagcaggacagcggcgcagccaccgtcggctaccagtacggcagcggcgcagaaaccgtcgtcgactagcagggcagcggagctgtttaggctgccattttcaagtgctcttattgaatatattccatcattatggacgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacattacagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39870" stop="42093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40169" g_stop="40301" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="0.82"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="316" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41793" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="343" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E400496" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40169" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATTCATCGGTTCACTTTT-TTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTT</genome_strand>
        <mrna_strand>ATCTGTTCATCGTTTCACTTTTGTTTACTCTCACCGCACAGCAACCGTCGGCGTCCAGCAGGACAGCGGCGCAGCCACCGTCGGCTACCAGTACGGCAGCGGCGCAGAAACCGTCGTCGACTAGCAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTAGGCTGCCATTTTCAAGTGCTCTTATTGAATATATTCCATCATTATGGACGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTACAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487238" ref_strand="+" ref_description="SGN-E487238 [cSTE-24-N10]">
      <seq>aattcaaaaaatctgattcaccgtttcacttttttttactctaccgcgcatcaaccgtcggcgtccagcaggacagcggcgcagccaccgtcggctaccagcagggcagcggcgcagaaaccgtcggcgactagcagggcagcggcgcagaaaccgtcggcgactagcagggcagcggagctgtttaggctgccattttcaagtgctcttattgaatatattccatcattatggacgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacattacagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcgttgaagctccatcatgatgggcatatgggcagctttgaggattcatctggtaaatcatatgaagtggtcagttgtagagcgcaggacccagatgcggtggtctttctatcatctgagtctgagccaaaaattgctggcaaaatttcgcagcgtgtttcccttatccattatccggaaccaagtgagcttaaacaaaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcgtctcgtcgctttgcaactcctagtcaagtactagaacacggagtattatgcaatcagggagttcttccaaatctaccaagagaaacacagtgatggcggccctgcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39857" stop="43168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40202" g_stop="40301" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="177" r_length="100" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="0.88"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="359" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="438" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="522" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42868" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="757" r_length="235" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E487238" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40202" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATC</genome_strand>
        <mrna_strand>GGCGCAGCCACCGTCGGCTACCAGCAGGGCAGCGGCGCAGAAACCGTCGGCGACTAGCAGGGCAGCGGCGCAGAAACCGTCGGCGACTAGCAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTAGGCTGCCATTTTCAAGTGCTCTTATTGAATATATTCCATCATTATGGACGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTACAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCGTTGAAGCTCCATCATGATGGGCATATGGGCAGCTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAAGTGGTCAGTTGTAGAGCGCAGGACCCAGATGCGGTGGTCTTTCTATCATCTGAGTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCAGCGTGTTTCCCTTATCCATTATCCGGAACCAAGTGAGCTTAAACAAAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCGTCTCGTCGCTTTGCAACTCCTAGTC-AAGTACTAGAACACGGAGTATTATGCAATCAGGGAGTTCTTCCAAATCTACCAAGAG-AAACACAGTGATGGCGGCCCTGC-AAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728018" ref_strand="+" ref_description="SGN-E728018 [LA16BG10]">
      <seq>gcagctaccgtcggcgaccaacagaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39905" stop="43295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40205" g_stop="40301" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="278" r_length="181" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="357" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42995" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="806" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E728018" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40205" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCC</genome_strand>
        <mrna_strand>GCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTC-AAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455130" ref_strand="+" ref_description="SGN-E455130 [cSTS-25-M8]">
      <seq>caaccgtcggcgtccagcaggacagcggcgcagccaccgtcggcaaccagtacggcagcggcgcagaaaccgtcgtcgactagcagggcagcggagctgtttaggctgccattttcaagtgctcttattgaatatattccatcattatggacgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatctcaacattacagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcgttgaagctccatcatgatgggcacatgggcagctttgaggattcatctggtaaatcatatgaagtggtcagttgtagagcgcaggacccagatgcggtggtctttctaccatctgagtctgagccaaaaattgctggcaaaatttcccggcgtgtttccctaatccattatccggaaccaagtgagcttaaacagaacaacataaacttgaagcagatgatggctcagagatcatctggtactacattgaccaattcgtctcgtcgctttgcaactcctagtcaaagtactagaacacggagtattatgcgaatcagggagttcatccaaatctaccaagagaaaacacagtgatggcggctctgcaaaatccaataaccaatctcttcaagattcaagcaaaaagtggtcgtagtgcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39909" stop="43218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40209" g_stop="40301" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="0.82"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="275" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="354" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="438" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42918" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="728" r_length="290" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E455130" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40209" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCG-ATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGC-AAAAGTGGTCGTAGTGCATTAA</genome_strand>
        <mrna_strand>CAACCGTCGGCGTCCAGCAGGACAGCGGCGCAGCCACCGTCGGCAACCAGTACGGCAGCGGCGCAGAAACCGTCGTCGACTAGCAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTAGGCTGCCATTTTCAAGTGCTCTTATTGAATATATTCCATCATTATGGACGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTCAACATTACAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCGTTGAAGCTCCATCATGATGGGCACATGGGCAGCTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAAGTGGTCAGTTGTAGAGCGCAGGACCCAGATGCGGTGGTCTTTCTACCATCTGAGTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCCCGGCGTGTTTCCCTAATCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAACATAAACTTGAAGCAGATGATGGCTCAGAGATCATCTGGTACTACATTGACCAATTCGTCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGAACACGGAGTATTATGCGAATCAGGGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCTCTGCAAAATCCAATAACCAATCTCTTCAAGATTCAAGCAAAAAGTGGTCGTAGTGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482036" ref_strand="+" ref_description="SGN-E482036 [cSTD-20-J5]">
      <seq>caaccgtcggcgtccagcaggacagcggcgcagccaccgtcggcaaccagtacggcagcggcgcagaaaccgtcgtcgactagcagggcagcggagctgtttaggctgccattttcaagtgctcttattgaatatattccatcattatggacgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatctcaacattacagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcgttgaagctccatcatgatgggcacatgggcagctttgaggattcatctggtaaatcatatgaagtggtcagttgtagagcgcaggacccagatgcggtggtctttctaccatctgagtctgagccaaaaattgctggcaaaatttcccggcgtgtttccctaatccattatccggaaccaagtgagcttaaacagaacaacatanacttgaagcagatgatggctcagagatcatctggtactacattgaccaattcgtctcgtcgctttgcaactcctagtcaaagtactagaacacggagtattatgcgatcagggagttcatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39909" stop="43125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40209" g_stop="40301" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="0.82"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="275" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="354" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="438" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42825" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="633" r_length="195" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E482036" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40209" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCA</genome_strand>
        <mrna_strand>CAACCGTCGGCGTCCAGCAGGACAGCGGCGCAGCCACCGTCGGCAACCAGTACGGCAGCGGCGCAGAAACCGTCGTCGACTAGCAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTAGGCTGCCATTTTCAAGTGCTCTTATTGAATATATTCCATCATTATGGACGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTCAACATTACAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCGTTGAAGCTCCATCATGATGGGCACATGGGCAGCTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAAGTGGTCAGTTGTAGAGCGCAGGACCCAGATGCGGTGGTCTTTCTACCATCTGAGTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCCCGGCGTGTTTCCCTAATCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAACATANACTTGAAGCAGATGATGGCTCAGAGATCATCTGGTACTACATTGACCAATTCGTCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGAACACGGAGTATTATGCGATCAGGGAGTTCATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576433" ref_strand="+" ref_description="SGN-E576433 [59651]">
      <seq>caaccgtcggcgtccagcaggacagcggcgcagccaccgtcggcaaccagtacggcagcggcgcagaaaccgtcgtcgactagcagggcagcggagctgtttaggctgccattttcaagtgctcttattgaatatattccatcattatggacgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatctcaacattacagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcgttgaagctccatcatgatgggcacatgggcagctttgaggattcatctggtaaatcatatgaagtggtcagttgtagagcgcaggacccagatgcggtggtctttctaccatctgagtctgagccaaaaattgctggcaaaatttcccggcgtgtttccctaatccattatccggaaccaagtgagcttaaacagaacaacataaacttgaagcagatgatggctcagagatcatctggtactacattgaccaattcgtctcggtcgctttgcaactcctaggtcaaagtactagaacacggagtattatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39909" stop="43108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40209" g_stop="40301" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="0.82"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="275" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="354" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="438" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42808" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="618" r_length="180" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E576433" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40209" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTC-GTCGCTTTGCAACTCCTA-GTCAAAGTACTAGGACACGGAGTATTATGCG</genome_strand>
        <mrna_strand>CAACCGTCGGCGTCCAGCAGGACAGCGGCGCAGCCACCGTCGGCAACCAGTACGGCAGCGGCGCAGAAACCGTCGTCGACTAGCAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTAGGCTGCCATTTTCAAGTGCTCTTATTGAATATATTCCATCATTATGGACGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTCAACATTACAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCGTTGAAGCTCCATCATGATGGGCACATGGGCAGCTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAAGTGGTCAGTTGTAGAGCGCAGGACCCAGATGCGGTGGTCTTTCTACCATCTGAGTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCCCGGCGTGTTTCCCTAATCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAACATAAACTTGAAGCAGATGATGGCTCAGAGATCATCTGGTACTACATTGACCAATTCGTCTCGGTCGCTTTGCAACTCCTAGGTCAAAGTACTAGAACACGGAGTATTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481917" ref_strand="+" ref_description="SGN-E481917 [cSTD-20-I5]">
      <seq>caaccgtcggcgtccagcaggacagcggcgcagccaccgtcggcaaccagtacggcagcggcgcagaaaccgtcgtcgactagcagggcagcggagctgtttaggctgccattttcaagtgctcttattgaatatattccatcattatggacgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatctcaacattacagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcgttgaagctccatcatgatgggcacatgggcagctttgaggattcatctggtaaatcatatgaagtggtcagttgtagagcgcaggacccagatgcggtggtctttctaccatctgagtctgagccaaaaattgctggcaaaatttcccggcgtgtttccctaatccattatccggaaccaagtgagcttaaacagaacaacataaacttgaagcagatgatggctcagagatcatctggtactacattgaccaattcgtctcgtcgctttgcaacttctagtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39909" stop="43082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40209" g_stop="40301" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="0.82"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="275" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="354" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="438" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42782" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="590" r_length="152" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E481917" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40209" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAA</genome_strand>
        <mrna_strand>CAACCGTCGGCGTCCAGCAGGACAGCGGCGCAGCCACCGTCGGCAACCAGTACGGCAGCGGCGCAGAAACCGTCGTCGACTAGCAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTAGGCTGCCATTTTCAAGTGCTCTTATTGAATATATTCCATCATTATGGACGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTCAACATTACAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCGTTGAAGCTCCATCATGATGGGCACATGGGCAGCTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAAGTGGTCAGTTGTAGAGCGCAGGACCCAGATGCGGTGGTCTTTCTACCATCTGAGTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCCCGGCGTGTTTCCCTAATCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAACATAAACTTGAAGCAGATGATGGCTCAGAGATCATCTGGTACTACATTGACCAATTCGTCTCGTCGCTTTGCAACTTCTAGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726144" ref_strand="+" ref_description="SGN-E726144 [LA10BG12]">
      <seq>gaacagcggcgcagccaccgtcggcgaccatcagggcagcggcgtagaaaccgtcggcaaccagaagggcagcggagctgttttggctgccattttcaagtgctcttattgaatatataccatcattatggatgctccgaatgaactgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatcttaacatttcagactcaactgagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcattgaagctccatcatgatgggcatatcggcagttttgaggattcatctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccagtgagcttaacagacagcataacttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="39928" stop="43011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40228" g_stop="40301" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41255" g_stop="41436" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="256" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="335" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="419" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42631" g_stop="42707" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="492" r_length="73" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E726144" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40228" e_stop="40301"/>
          <exon e_start="41255" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCGGTGCGTGTATTTCTCATTCTAACTCGTCTCTCAGTCCCTCTTCTCAGTATGTTTTAACTTAGTTTACAGAAGCACCTGGTTTATTCTTGAATTTATACTCTATTTTCGAGAAATTTTGTCACATGAGAATTTGATTGTCTGCCATGGAAGCTGGACTAATAGTTGTTATTCAGATAGAAAGTGCCTTATTCAATTCTTAAGTTAATCTGTAGGAGTTTTTGGTTAGGAGTTCAAGTGATTTGAACATTAGACATAGACTGTGATTATGCGATTATTAAGTCTTATAAAATTTAAACCACTTTTGATAGTGGGCTCGAGGAGAGGCGGAGGTAGGCTGAATAAGTATTGGGGAGAGGTGATTAGGCACGATATGTTGTATTGTAGCTTATCTAGGATTCAGTTTGAATGCTACATGATGAGCATAAATCACATGACGTGACGGGAAGACTATTTGAGCTTAGATAGGAGGGTATAGAGGCTGTGGATAAGGCTTGAAGGTTAGTGTTTAGTTGAGGGGTGTTCTTATTACTAGCCTATTCATGTCTTTGGCTGAGTGGAGCTCCGTGTTAGTCCTAGTGTCAGCATATTCATGTAGTCTTTGGTTTTGGATTTCTAATTATCATATGTGATTTAATGCATTTTCGCTTAGATGACTACACCTTGTTGTTAATGTCATGGTTTCTTGCATATATGTTCCACACTACTTTGCTATTTGTTGTCACGTTTTTCTCTTAATTACTGGTTTGATTTGCTTGAGTTGAGGGTCTTTTGGAAACAACCTCTTTACCTCGGAGAGGTAGTCGTAAGGTCTATCTACACTCTACTCTCTTCAGACCCCATTTTGTGGGGTTTCACTTGGTTTATTGCTGTTGTGGGTCAAAGGTCTATTAACTCCAAAGATTTTCAAATTTTGAGTTATCTAATGTGCTTTTCTGTGTAAACCTTTGGTGTAGGAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTG</genome_strand>
        <mrna_strand>GAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACC-AGTGAGCTT-AACAG-ACAGCAT-AACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576079" ref_strand="-" ref_description="SGN-E576079 [59240]">
      <seq>ttcaagtgctcttattgaatatattccatcactatggacgctccgaatgaacctgagctacaaaccaccatcagaatttgaggaggtcaaaaaggattcacttgtcaatctccaacattacagactcaactgaagctctggcttatacagtggccctttaatcaacatccaggtcttgatgggcaagaagtttcgttgaagctccatcatgatgggcacatgggcagctttgaggattcatctggtaaatcatatgaagtggtcagttgtagagcgcaggacccagatgcggtggtctttctaccatctgagtctgagccaaaaattgctggcaaaatttcccggcgtgtttccctaatccattatccggaaccaagtgagcttaaacagaacaacataaacttgaagcagatgatggctcagagatcatctggtactacattgaccaattcgtctcgtcgctttgcaactcctagtcaaagtactagaacacggagtattatgcgatcagggagttcatccaaatctaccaagagaaaacacagtgatggcggctctgcaaaatccaataaccaatctcttcaagattcaggcaaaagtggtcgtagtgcattgacctcttcaggatcattcgatcactctcaagatcaaaaattaaagaagaagaggaaaattgatggttgaagtgcttcctcttaagtgttttgaatcaaattctatttggttaaagaatctctttctagttgctctagtacaattgagcgctttacctcgtgccgaattcggcacgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="40975" stop="43381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41275" g_stop="41436" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41767" g_stop="41845" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="244" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="328" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42631" g_stop="43071" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="768" r_length="440" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E576079" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576079" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41275" e_stop="41436"/>
          <exon e_start="41767" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="43071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAA-CTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCT-TAACATTTCAGACTCAACTG-AGCTCTGGCTTATACAGTGGCCCTTTAATCAAGTAAGATTCGTGAGAATTTTTTGTTCTTCCATTTTAGGATGTAAGAAGCTGCATTTTTTTTCCCAATCAGGTCGAAAATATCCTTCCAACAAATGAATAGATTTCCTGTCTCTATTTCCTTTTCTGGGACAAGCCATGTAAAATTTTCCATCCTTTCCTAGTTTCTAAACAAAAAGAGTTTATTTATGAGATTTACTATGATTTCGAATGGAATGAGAATGATTCTTAATGTTGGGTGTGCACTTGAGGAGTTGAGGTTGTTAATATATTTTTCAGTCCTTGTCACTTACATCGGTTCTGAGTTTTGACATTTCCAATTGGCTACTCCAGCATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTT</genome_strand>
        <mrna_strand>TTCAAGTGCTCTTATTGAATATATTCCATCACTATGGACGCTCCGAATGAACCTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTCCAACATTACAGACTCAACTGAAGCTCTGGCTTATACAGTGGCCCTTTAATCAA..........................................................................................................................................................................................................................................................................................................................................CATCCAGGTCTTGATGGGCAAGAAGTTTCGTTGAAGCTCCATCATGATGGGCACATGGGCAGCTTTGAGGATTCATCTG................................................................................................................................................................................................GTAAATCATATGAAGTGGTCAGTTGTAGAGCGCAGGACCCAGATGCGGTGGTCTTTCTACCATCTGAGTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCCCGGCGTGTTTCCCTAATCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAACATAAACTTGAAGCAGATGATGGCTCAGAGATCATCTGGTACTACATTGACCAATTCGTCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGAACACGGAGTATTATGCGATCAGGGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCTCTGCAAAATCCAATAACCAATCTCTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTGACCTCTTCAGGATCATTCGATCACTCTCAAGATCAAAAATTAAAGAAGAAGAGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTTTGAATCAAATTCTATTTGGTTAAAGAATCTCTTTCTAGTTGCTCTAGTAC-AATTGAGCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294878" ref_strand="-" ref_description="SGN-E294878 [cLET-17-G1](-)">
      <seq>ctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagcgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="41735" stop="43280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41843" g_stop="41845" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="87" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42631" g_stop="42980" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="437" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E294878" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294878" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41843" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGAT</genome_strand>
        <mrna_strand>CTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGCGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294877" ref_strand="+" ref_description="SGN-E294877 [cLET-17-G1]">
      <seq>ctggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagcgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="41735" stop="43280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41843" g_stop="41845" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42038" g_stop="42121" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="87" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42631" g_stop="42980" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="437" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E294877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41843" e_stop="41845"/>
          <exon e_start="42038" e_stop="42121"/>
          <exon e_start="42631" e_stop="42980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCAAGTTTAGTCATAAGAATAACATTTATATATTTACCAGTTTCCAAAAAAAAGAAAAAAGAACAACATTTACATCTAATTGAGTTTGTCTCTTCCACCTCAGCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGAT</genome_strand>
        <mrna_strand>CTG................................................................................................................................................................................................GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGCGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314325" ref_strand="+" ref_description="SGN-E314325 [cTOA-21-D21]">
      <seq>gcacctctaattttcatagcaggcattttaagataatgaaagattcttttaatttcttaacgtcttgctcaacgattgcttttgtaacaggtaaatcatatgaggtggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattggtaactcttagttcctttgcattttactgtacacttgtctgcttattcactcatgatctcgacactcaaaacgtgcaatactgcaatatccttttgggtatgtcatttttatctcatattttgtgatgttggtgtcaagtcaaagctattctgttgacagttgagacgtcgtgcttcataattttgttgtaccaaccattatgttgtgtacccacgcactgttgtaacatgtgtactgaagctaatgtgactcaatatctttgatgatttcaatttaatctactatgtccacatatgacatgctcgttttgtttgcatattgaaattttattgctctctcttagttgagcggaacttgcacataatccaactactaatgctcttctgtttatatttttggtagaacttattgttattccttgtgaacctctatatgatccaaatgctgctaattttccgttcaagcacaaaattaaggcgtttgagcagagttttgcatgttttggcagctggcaaaatttcgcggcgtgtttcccttgtcattatcccggaacaagtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="41648" stop="42984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41948" g_stop="42684" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E314325" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41948" e_stop="42684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGC</genome_strand>
        <mrna_strand>GCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGT-CATTATCCCGGAACAAGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396329" ref_strand="+" ref_description="SGN-E396329 [TUS-46-H18](-)">
      <seq>tggtcagttgtagagcgcaggaccccgatgcgttggtctttctatcatctgattctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttgtccattatccggaaccaagtgagcttaaacagaacagcataaacttgaagcagatgatggctcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgatagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttaataatcccccacaatgatgggaccaatatttaatctaagaatcaaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="41753" stop="43524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42053" g_stop="42121" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42631" g_stop="43216" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="656" r_length="587" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="668"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E396329" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42053" e_stop="42121"/>
          <exon e_start="42631" e_stop="43216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCC-CAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>TGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGATAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTAATAATCCCCCACAATGATGGGACCAATATTTAATCTAAGAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607727" ref_strand="-" ref_description="SGN-E607727 [23698]">
      <seq>tcaattgtagagcacaagacccagatgcagtggtctttctatcttttgagtctgagccaaaaattgctggcaaaatttcgcggcgtgtttcccttatccactatccggaaccaagtgagctaaaacagaacagcataaacttgaagcagatgatggctcagagatcatctggtactacattgaccaattcttctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgcgatcagggagttcatccaaatctaccatgagaaaatacggtgatggccgccctgcaaaatccaatgatcaatctgttcaagattcaggcagaagtggtcgtagtgcattgacctcttcaggatcattcgatcactctcgagatccaaaatcaaagaagaaaaggaaaactgatggttgaagtgctgcctcaagtgttctaaatcgaattgtttttggttaaagaatctctttctagctgctctagagcgcgttaaccattcagccatgaactcgagcacgacattagtttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="41756" stop="43413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42056" g_stop="42121" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42631" g_stop="43113" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="538" r_length="472" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E607727" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607727" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42056" e_stop="42121"/>
          <exon e_start="42631" e_stop="43113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTC</genome_strand>
        <mrna_strand>TCAATTGTAGAGCACAAGACCCAGATGCAGTGGTCTTTCTATCTTTTGAGTCTGAGCCAAAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCAAAATTTCGCGGCGTGTTTCCCTTATCCACTATCCGGAACCAAGTGAGCTAAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCATCTGGTACTACATTGACCAATTCTTCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCAGGGAGTTCATCCAAATCTACCATGAGAAAATACGGTGATGGCCGCCCTGCAAAATCCAATGATCAATCTGTTCAAGATTCAGGCAGAAGTGGTCGTAGTGCATTGACCTCTTCAGGATCATTCGATCACTCTCGAGATCCAAAATCAAAGAAGAAAAGGAAAACTGATGGTTGAAGTGCTGCCTC--AAGTGTTCTAAATCGAATTGTTTTTGGTTAAAGAATCTCTTTCTAGCT--GC---T-C---TAGAGCGCGTTAACCATTCAGCCATGAACTCGAGCACGACATTAGTTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397769" ref_strand="+" ref_description="SGN-E397769 [TUS-46-H19](-)">
      <seq>ttatccggaaccaagtgaggttaaacagaacagcataaacttgaagcagatgatggttcagagatcgtctggtactacattgaccaattcatctcgtcgctttgcaactcctagtcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttgttaatcccccccaatgatgggaccaatatttaatctaagtatcaaatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42365" stop="43524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42665" g_stop="43216" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="566"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397769" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42665" e_stop="43216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAAT-CCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>TTATCCGGAACCAAGTGAGGTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGTTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398758" ref_strand="+" ref_description="SGN-E398758 [TUS-46-I23](-)">
      <seq>atggttcagagatcgtctggtactacattgaccaattcatctccctccccccgcaactcctagtcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttgttaatcccccccaatgatgggaccaatatttaatctaagtatcaaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42417" stop="43524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42717" g_stop="43216" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="514"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E398758" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42717" e_stop="43216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCT-CGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAAT-CCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>ATGGTTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCCCTCCCCCCGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397777" ref_strand="+" ref_description="SGN-E397777 [TUS-46-J19](-)">
      <seq>cctactcaaagtactaggacacggagtattatgcgatcggagagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttgttaatcccccccaatgatgggaccaatatttaatctaagtatcaaatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42474" stop="43524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42774" g_stop="43216" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="457"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397777" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42774" e_stop="43216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAAT-CCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>CCTACTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370527" ref_strand="+" ref_description="SGN-E370527 [TUS-29-O1](-)">
      <seq>gtattatgcgatcgagaagttcatccaaatctaccaagagaaaacacagtgatggcggccctgcaaaatccaataaccaatctgttcaagattcaggcaaaagtggtcgtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttgttaatccccccaatgatgggaccaatatttaatctaagtatcaaatgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42499" stop="43524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42799" g_stop="43216" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E370527" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42799" e_stop="43216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>GTATTATGCGATCGAGAAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397510" ref_strand="+" ref_description="SGN-E397510 [TUS-45-J22](-)">
      <seq>aaaatccaataaccaatctgttcaagattcaggcaaaagtggtagtagtgcattaacctcttcaggatccttcgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttgttaatcccccccaatgatgggaccaatatttaatctaagtatcaaatgttaaaaaaaaaaaaaaaaaactcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42563" stop="83184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42863" g_stop="43216" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43217" i_stop="43884" i_length="668">
            <donor d_prob="0.790" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43885" g_stop="43917" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="388" r_length="33" r_score="0.606"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397510" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42863" e_stop="43216"/>
          <exon e_start="43885" e_stop="43917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAAT-CCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAATGTTATATACCTTTGTTTTAAAATTGTTTTAATATATGTATTAGTTGTACTCTTTATTCAGTATTAGGGTGTATATACACATATCAAATTACGATATTAGTTATACGTGGATAAAGATAGAAAATAGTCTCATCCAAACTAATACTCTTTTTTCTTTACTTTCCATCTGGTGTCTGGTACTCATTAAATTCAAATTCGCGTCAGAAAGTTTCACATTAGAGGGTAAAGCATTGTCTGGTACTCACTAAATCCGAATTTGCGTCGAAAAGTTTAACATTAGAGGGTAAAACATTGCCTAACATAGGCGGCTTTATACCAACAACCCTGATTTGCATTGGGAAGTTCCGCATTGGAGGGTAAAGCGAACCAAAGACGACTCTGTACCCAAGGAGGCTCGAACTCAAGACCTCTTGAATAAGGATGAATGAGTACTTATCACTCTACCACAACTCTTGTTAGCAGCCTAACTAAGCTAATGCTTCTTCCATCATTCATTAATTACCATCAAGAGCGGTAACGAGGTGAATGCGATTCCTTCATCTCTAATCAGATATATCAGATTCAAACTCAACACATAAAACAATTTAAGAAGTACCATTCCTTTAATGACTTTTTTGGCATAAATTCAAATCAATGGAGCTATCTCAACACAAATATCAAATGTAAAACTTTAAAAAATATAACAAGATAATTGACTTGGAC</genome_strand>
        <mrna_strand>AAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTAGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAAAACTCGAGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397627" ref_strand="+" ref_description="SGN-E397627 [TUS-46-K19](-)">
      <seq>aggcaaaagtggtcgtcgtgcattaacctcttcaggatcctttgatcactctcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttttgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgccttaagaatccccccaatgatgggaccaatatttaatctaagtatcaaatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42593" stop="43524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42893" g_stop="43216" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="337"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397627" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42893" e_stop="43216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>AGGCAAAAGTGGTCGTCGTGCATTAACCTCTTCAGGATCCTTTGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTTTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTAAGAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397614" ref_strand="+" ref_description="SGN-E397614 [TUS-46-I21](-)">
      <seq>gcaaaagtggttgtagagccttaacctcttcaggatccttcgatcactttcaagatcaaaaatcaaagaagaagcggaaaattgatggttgaagtgcttcctcttaagtgttctgaatcgaattctttttggttaaagaatctctttctagttgcgctagtacaaattgagcgctttaaccattcagccatgaactcgaacacgtccttattttctctcttatattacttctagaacaagtgtgtgaggtttttgcgccatagcttgtgtgcctaattaatcccccccaatgatgggaccaatatttaatctaagtatcaaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42595" stop="43524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42895" g_stop="43216" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="335"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E397614" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42895" e_stop="43216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAAT-CCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</genome_strand>
        <mrna_strand>GCAAAAGTGGTTGTAGAGCCTTAACCTCTTCAGGATCCTTCGATCACTTTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTAATTAATCCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605026" ref_strand="+" ref_description="SGN-E605026 [57046]">
      <seq>caagatcaaaaattaaagaagaagaggaaaattgatggttgaagtgcttcctcttaagtgttttgaatcaaattctatttggttaaagaatctctttctagttgctctagtacaattgagcgctttaaccattcagccatgaactcgaccacggccttattttctctcttatattagttgtagaacaaatgtgtgaggtttttgcgccatagcttgtgtgccttgttaatcccccaatgatgggaccaatatttaatcaagtatcaaatgttatgtacctttgtttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="42645" stop="43538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42945" g_stop="43242" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E605026" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42945" e_stop="43242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAATGTTATATACCTTTGTTTTAAAATTGT</genome_strand>
        <mrna_strand>CAAGATCAAAAATTAAAGAAGAAGAGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTTTGAATCAAATTCTATTTGGTTAAAGAATCTCTTTCTAGTTGCTCTAGTAC-AATTGAGCGCTTTAACCATTCAGCCATGAACTCGACCACGGCCTTATTTTCTCTCTTATATTAGTTGTAGAACAAATGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAAT-CCCCCAATGATGGGACCAATATTTAATC-AAGTATCAAATGTTATGTACCTTTGTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455980" ref_strand="+" ref_description="SGN-E455980 [cSTS-28-M17]">
      <seq>cccactttcatcttcttcaaagacccaacaaaacccaaatgcaaattcttgtctgaaaaatccaccccacccccccaaatcaatgggttgtgtaccatcaaaacttttcaagaaaaaaaatttgagcaaaaatggtgatgattaccctgaccatgttgtttctttaacttcaagtacttatggtgtgttgaatcttgaaaaagattcaaactttatgcgaaacccgcctttatctatcaaggaatgtgtgaaagaaatcaagaaatcaccaccccatgaagaatctcatgaagtaattaatacttgggagcttatggaaggtcttgatgaagaagttgttgtacaaaattccaagattagcccaaaatctcgggtttttcttcgtggatttggtgatattgatgctcgtagcccgttgaagttcttgaatcagatgagcactccgcgtaaattcaagaaattgagtggaaaggagaataaaggaggaaggggtaatgaagctaatttagttgattttagcccaaaaaatgtgttgaaagagagtaaattgatgcagagtccatggaaaatgtcaccaagattgaatttttcgaagagggggagtccaaatgaggtgaaatgtgatagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="48015" stop="49240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48315" g_stop="48940" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E455980" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48315" e_stop="48940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTTTCATCTTCTTCAAAAACTCAAC-AAA---AAATGCAAATTCTTGTCTGAAAAATTCACCCCCACCCCCCCAAATCAATGGGTTGTGTACCATCAAAACTCTTCAACAAAAAAAATTTGAGAAAAAATGGTGATGATTACCCTGACCATGTTGTTTCTTTAACTTCAAGTACTTATGGTGTGTTGAATCTTGAAAAAGATTCAAACTTTGTGCGAAACCCGCCTTTATCGATTAAGGAATGTGTTAAAGAGATCAAGAAATCACCACCCCATGAAGAATCTCATGAAGTTATTAATACTTGGGAGTTAATGGAAGATCTTGATGAAGAAGTTGTTGTAAAAAATTCCAAGATTAGTCCAAAATCTCGGGTTTTTCTTCGTGGATTTGGCGATATTGATGCTCGTAGTCCTTTGAAGTTCTTGAATCAAATGAGCTCTCCGCGTAAATTCAAGAAATTGAGTGGAAAGGAGAAT---CGAGGAAGGGGTAATGAAACTAATTTGGTTGATTTCAGCCCCAAAAATGTGTTGAAGGATTGTAAATTGATGCAGAGTCCATGGAAAATGCCACCAAGATTGAATTTTTCGAAGAAGGGGAGTCCGAATGAGGTGAAATGTGATAGTTTGA</genome_strand>
        <mrna_strand>CCCACTTTCATCTTCTTCAAAGACCCAACAAAACCCAAATGCAAATTCTTGTCTGAAAAATCCA-CCCCACCCCCCCAAATCAATGGGTTGTGTACCATCAAAACTTTTCAAGAAAAAAAATTTGAGCAAAAATGGTGATGATTACCCTGACCATGTTGTTTCTTTAACTTCAAGTACTTATGGTGTGTTGAATCTTGAAAAAGATTCAAACTTTATGCGAAACCCGCCTTTATCTATCAAGGAATGTGTGAAAGAAATCAAGAAATCACCACCCCATGAAGAATCTCATGAAGTAATTAATACTTGGGAGCTTATGGAAGGTCTTGATGAAGAAGTTGTTGTACAAAATTCCAAGATTAGCCCAAAATCTCGGGTTTTTCTTCGTGGATTTGGTGATATTGATGCTCGTAGCCCGTTGAAGTTCTTGAATCAGATGAGCACTCCGCGTAAATTCAAGAAATTGAGTGGAAAGGAGAATAAAGGAGGAAGGGGTAATGAAGCTAATTTAGTTGATTTTAGCCCAAAAAATGTGTTGAAAGAGAGTAAATTGATGCAGAGTCCATGGAAAATGTCACCAAGATTGAATTTTTCGAAGAGGGGGAGTCCAAATGAGGTGAAATGTGATAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321956" ref_strand="+" ref_description="SGN-E321956 [cTOB-29-I6]">
      <seq>ttggtttcgcggaggagaaggagtttaagtccgttgtttgatccacagctcgtggaagctttcgagaaagagatgtctgcagaagaagaacagatcaagaaaatggtgtctgctacgccaatttctcgaaaagctaggcattcacaagaagcagagacaatgcttgagttatttgagaaaaaatgcccaccagaaggtgaaaatgcagttgtaatctatacaactacattgaggggtattagaaagacatttgaggattgtaatactgctagggctatactcgaatcgaatgatgttcgtgtgattgaacgtgatatatcgatggattcggggtataaggaagaactaagaggactaatggggacaaaagaggtgaaagttcctttagtgtttgtaaaagggaggttaattggtggagctgatgaaatgttgaagttggaagaggagggtaaattgggaattttactcgacgggatcccgagggcagctgccacgtgtgatggctgcgcggggatccggttcgtgatgtgtatggactgcaatgggagtagaaaattgttggccaaggatggaaagagtactgtgaaatgtggagactgcaatgagaatggtttgattcagtgtccaatttgttgttaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="48655" stop="49897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48955" g_stop="49597" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E321956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48955" e_stop="49597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTCGCGGAGGAGAAGGAGTTTAAGTCCGTTGTTTGATCCACAGCTCGTGGAAGCTTTCGAGAAAGAGATGTCTGCAGAAGAAGAACAGATCAAGAAAATGGTGTCTGCTACGCCAATTTCTCGAAAAGCTAGGCATTCACAAGAAGCAGAGACAATGCTTGAGTTATTTGAGAAAAAATGCCCACCAGAAGGTGAAAATGCAGTTGTAATCTATACAACTACATTGAGGGGTATTAGAAAGACATTTGAGGATTGTAATACTGCTAGGGCTATACTCGAATCGAATGATGTTCGTGTGATTGAACGTGATATATCGATGGATTCGGGGTATAAGGAAGAACTAAGAGGACTAATGGGGACAAAAGAGGTGAAAGTTCCTTTAGTGTTTGTAAAAGGGAGGTTAATTGGTGGAGCTGATGAAATGTTGAAGTTGGAAGAGGAGGGTAAATTGGGAATTTTACTCGACGGGATCCCGAGGGCAGCTGCCACGTGTGATGGCTGCGCGGGGATCCGGTTCGTGATGTGTATGGACTGCAATGGGAGTAGAAAATTGTTGGCCAAGGATGGAAAGAGTACTGTGAAATGTGGAGACTGCAATGAGAATGGTTTGATTCAGTGTCCAATTTGTTGTTAACTAT</genome_strand>
        <mrna_strand>TTGGTTTCGCGGAGGAGAAGGAGTTTAAGTCCGTTGTTTGATCCACAGCTCGTGGAAGCTTTCGAGAAAGAGATGTCTGCAGAAGAAGAACAGATCAAGAAAATGGTGTCTGCTACGCCAATTTCTCGAAAAGCTAGGCATTCACAAGAAGCAGAGACAATGCTTGAGTTATTTGAGAAAAAATGCCCACCAGAAGGTGAAAATGCAGTTGTAATCTATACAACTACATTGAGGGGTATTAGAAAGACATTTGAGGATTGTAATACTGCTAGGGCTATACTCGAATCGAATGATGTTCGTGTGATTGAACGTGATATATCGATGGATTCGGGGTATAAGGAAGAACTAAGAGGACTAATGGGGACAAAAGAGGTGAAAGTTCCTTTAGTGTTTGTAAAAGGGAGGTTAATTGGTGGAGCTGATGAAATGTTGAAGTTGGAAGAGGAGGGTAAATTGGGAATTTTACTCGACGGGATCCCGAGGGCAGCTGCCACGTGTGATGGCTGCGCGGGGATCCGGTTCGTGATGTGTATGGACTGCAATGGGAGTAGAAAATTGTTGGCCAAGGATGGAAAGAGTACTGTGAAATGTGGAGACTGCAATGAGAATGGTTTGATTCAGTGTCCAATTTGTTGTTAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249857" ref_strand="+" ref_description="SGN-E249857 [cLEF-57-O14]">
      <seq>tcgtgccgcgcacactgaaaaaaaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatacgaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54103" stop="57303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54404" g_stop="54520" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57003" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="561" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E249857" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54404" e_stop="54520"/>
          <exon e_start="56560" e_stop="57003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCTTCGCACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTC</genome_strand>
        <mrna_strand>TCGTGCCGCGCACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396470" ref_strand="+" ref_description="SGN-E396470 [TUS-16-A9]">
      <seq>cacactgaaaaaaaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatacgaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagccccaacatcccctgactgtattgttttcacagttaagcatgtcagccccactttggttggcattagcacatgtaaaccaggagcaactgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54114" stop="57403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54414" g_stop="54520" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57103" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="651" r_length="544" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E396470" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54414" e_stop="54520"/>
          <exon e_start="56560" e_stop="57103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGG</genome_strand>
        <mrna_strand>CACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGGCATTAGCACATGTAAACCAGGAGCAACTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205191" ref_strand="+" ref_description="SGN-E205191 [cLEC-16-B22]">
      <seq>acactgaaaaaaaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccgggtaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54115" stop="57190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54415" g_stop="54520" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56890" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="437" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E205191" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54415" e_stop="54520"/>
          <exon e_start="56560" e_stop="56890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGC</genome_strand>
        <mrna_strand>ACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGGTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608546" ref_strand="+" ref_description="SGN-E608546 [24535]">
      <seq>ggaaaaaaaaacatatactgctttggctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcggtctcaaatacaaggtccctcttcaaacggcttcatcgaccagttccagagctgcagatgtagtcaagtagccaccttgctgcggaaaaagtgaaaccgaaccgatggttcagatgtatcactaaatgttgtcaaagacctggaaggcatgataaagaacagggttctaatcatgctatctctcaatttatagtactttataagttgtcattaaacattttctttcagtgtagataacattttagggtaatgttgtagttgaattcgtagaagtttaattcaaactgactaaataagagctttttaggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54123" stop="59446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54421" g_stop="54520" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="58850" i_length="4330">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58851" g_stop="59148" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="407" r_length="306" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="425"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E608546" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54421" e_stop="54520"/>
          <exon e_start="58851" e_stop="59148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAACATATACTGCTTT-GCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAGGTACTATTCTTTTCTGTTAGATTTTTACTTCTTCTAGTCATGAGGTTGAATATAAGAATTATCTTTGCTTGACTGAAATCATAAACTGTTTATAACAGCATGCATGTCCTAGAAAGTACGTGTGTGTTACGGATATGTACTCGATCTTTAACAATGCTCGATGAAGTTGTTGATTTTAAGATTACTATGATAGCTAAGTGCATTTTTGTTGGTTACATTTCTATTTCACTAGTTGCTTTGACCCTCCAAAATTGTTGCTGCACCCGTATCGGATCCTCAATAAGTGCATAGATTTTGGAGGATCCGACACACAGCGGGAAGTACTTTTGAATAGTCTATGCAACTTGGCCTACAAGATCTCTTATCTTTTGAAGGCTGAAACTTCACATCTTACAAGTCACCTTGGGAAGTGTTTTTCTCAAGGATAAAGTGTTCCTGGCTTAACCAAATGACATCTCATTTGGCAAAGTTCATAGTTTTAAAAGTATGAAACATTTTATCATAAACCCCCCTGGTTTCTAATCGAGAAGTTCCAAGGCAAGATCATGTTTATGTTATTTAAATTGCTATAGCACTAGCCTTTAAGAGGACCCTATAGCTCTAATTGATTGTGGATCCTTCTGCTATGTCTTTCTTTCTTCCTCGACTTTGCAAATGGTAGACTATGTTTGGCATCTGTAGACTCTTAAATTAGGCAATGATAAGGACACAACAGCAGCGTGTAAGTGTGTTTGTAGTTCAGAGAAGGTATTGACATGTTGGATTGAGAGATCCAGCTGAACAGTATGGAAGATTGTGTTTCAATGACTAAGAGGCTCGGAGCTCTGTGTTACTATGTAACATCAGATCCTTCATGTGACCTGACGTGCAACGTCAAATGGATGTGGAATAAGTATGGGTACCTAGTTCAAATTCTTCAAACTATCTAGTTCTTTTTTCTGAATGCGCTTTACTGCTTTTCCTTACTAATGACATGTTTTCTTCACTGCATATTTCCTTCTTCATAACTACTTTGATTTTCTGCGTACACTCTACACTGGATATGTTGTTGTTGCATCGCAGATCGTCTTTTGGGACTACACTGGGTTTGTTGTAGTTGTCGTATGTCTTTAGTCAACTATTTCTTCATATTCAAAATTACTATATACTAACTTCTGGCTAATCATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCAT----C-G----AGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAG</genome_strand>
        <mrna_strand>GGAAAAAAAAACATATACTGCTTTGGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGACCAGTTCCAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAACCGAACCGATGGTTCAGATGTATCACTAAATGTTGTC-AAAGACCTGGAAGGCATGATAAAGAACAGGGTTCTAATCATGCTATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACATTTTCTTTCAGTGTAGATAACATTTTAGGGTAATGTTGTAGTTGAATTCGTAGAAGTTTAATTCAAACTGACTAAATAAGAGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205673" ref_strand="+" ref_description="SGN-E205673 [cLEC-21-G3]">
      <seq>aaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgggttcttcttcaatccttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54126" stop="57246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54426" g_stop="54520" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56946" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="482" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E205673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54426" e_stop="54520"/>
          <exon e_start="56560" e_stop="56946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATAC</genome_strand>
        <mrna_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGGGTTCTTCTTCAATCCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298443" ref_strand="+" ref_description="SGN-E298443 [cLET-41-C15]">
      <seq>aaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54126" stop="57246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54426" g_stop="54520" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56946" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="482" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E298443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54426" e_stop="54520"/>
          <exon e_start="56560" e_stop="56946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATAC</genome_strand>
        <mrna_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294739" ref_strand="-" ref_description="SGN-E294739 [cLET-17-K15](-)">
      <seq>aaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54126" stop="57221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54426" g_stop="54520" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56921" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="457" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E294739" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294739" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54426" e_stop="54520"/>
          <exon e_start="56560" e_stop="56921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGC</genome_strand>
        <mrna_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294738" ref_strand="+" ref_description="SGN-E294738 [cLET-17-K15]">
      <seq>aaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54126" stop="57221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54426" g_stop="54520" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56921" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="457" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E294738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54426" e_stop="54520"/>
          <exon e_start="56560" e_stop="56921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGC</genome_strand>
        <mrna_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200263" ref_strand="+" ref_description="SGN-E200263 [cLEC-12-K9]">
      <seq>aaaaaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgggacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggctgatattctagaacagattctcagccggttaaacttggaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatggttttcccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54126" stop="57087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54426" g_stop="54520" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56787" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="323" r_length="228" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E200263" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54426" e_stop="54520"/>
          <exon e_start="56560" e_stop="56787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAA</genome_strand>
        <mrna_strand>AAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGGGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGCTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGGAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGGTTTTCCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307145" ref_strand="+" ref_description="SGN-E307145 [cLEY-15-M13]">
      <seq>aaaaacatatactgctttgctttaacttagggggaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54127" stop="57246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54427" g_stop="54520" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56946" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="481" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E307145" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54427" e_stop="54520"/>
          <exon e_start="56560" e_stop="56946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATAC</genome_strand>
        <mrna_strand>AAAAACATATACTGCTTTGCTTTAACTTAGGGGGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332027" ref_strand="+" ref_description="SGN-E332027 [cTOD-16-H4]">
      <seq>aaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatacgaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagccccaacatcccctgactgtattgntttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccangagcaactgaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54129" stop="57404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54429" g_stop="54520" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57104" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="637" r_length="545" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E332027" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54429" e_stop="54520"/>
          <exon e_start="56560" e_stop="57104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGA</genome_strand>
        <mrna_strand>AAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGNTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCANGAGCAACTGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248787" ref_strand="+" ref_description="SGN-E248787 [cLEG-5-M21]">
      <seq>aaacatatactgctttgctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatacgaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagccccaacatcccctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54129" stop="57326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54429" g_stop="54520" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57026" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="559" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E248787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54429" e_stop="54520"/>
          <exon e_start="56560" e_stop="57026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACT</genome_strand>
        <mrna_strand>AAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604293" ref_strand="+" ref_description="SGN-E604293 [74426]">
      <seq>ctgctttggctttaacttagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattagctgcgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgtttcgtgtgccggttgatatcctagaacagattctctgccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcgaggctttgctatgcgaaggatggctggttgctgctatacaagcccagaagtttgcgtgtgttcttcttcaatccttatacgaaggacgtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagctccaacatcccccgactgtattgttttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccaggggcaactgaatggacaactgccaattaccaaaaccgtttgccatttgttagcagcatttggaatacgttagttttctgcaatggtctctttattgtctgagtcttactggctggttgggagtctatgatccagaagaacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54138" stop="57535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54438" g_stop="54520" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57235" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="759" r_length="675" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E604293" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54438" e_stop="54520"/>
          <exon e_start="56560" e_stop="57235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTT-GCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACT</genome_strand>
        <mrna_strand>CTGCTTTGGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTGCGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTCGTGTGCCGGTTGATATCCTAGAACAGATTCTCTGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCGAGGCTTTGCTATGCGAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAAGTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGACGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCTCCAACATCCCCCGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGGGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATACGTTAGTTTTCTGCAATGGTCTC-TTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410449" ref_strand="+" ref_description="SGN-E410449 [PPI-17-G7]">
      <seq>ttagatagaaacgcccaaagctgagttcctgcagccatggctggaagaaaaagaagaaaaatgaagtcattagctgcgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgatcaaaactcattgtttcgtgtgccggttgatatcctagaacagattctctgccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctaccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcgaggctttgctatgcgaaggatggctggttgctgctatacaagcccagaagtttgcgtgtgttcttcttcaatccttatacgaaggacgtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagctccaacatcccccgactgtattgttttcacagttaagcatgtcagccccactttggttgncattagcacatgtaaaccaggggcaactgaatggacnactgcccatttacaaancgtttgccatttgttagcagcatttggaaatagttagttttctgcaatggtctcttttattgtctgagtcttactggctggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54153" stop="57510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54453" g_stop="54520" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57210" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="718" r_length="650" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E410449" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54453" e_stop="54520"/>
          <exon e_start="56560" e_stop="57210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGG</genome_strand>
        <mrna_strand>TTAGATAGAAACGCCCAAAGCTGAGTTCCTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTGCGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGATCAAAACTCATTGTTTCGTGTGCCGGTTGATATCCTAGAACAGATTCTCTGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTACCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCGAGGCTTTGCTATGCGAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAAGTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGACGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCTCCAACATCCCCCGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGNCATTAGCACATGTAAACCAGGGGCAACTGAATGGACNACTGCCCATTTAC-AAANCGTTTGCCATTTGTTAGCAGCATTTGGAAATAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432027" ref_strand="+" ref_description="SGN-E432027 [STM-56-K8]">
      <seq>ttacatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaataaaaatgaagtcattagctgcgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgtttcgtgtgccggttgatatcctagaacagattctctgccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcgaggctttgctatgcgaaggatggctggttgctgctatacaagcccagaagcttgcgtgtgttcttcttcaatccttatacgaaggacgtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagctccaacatcccccgactgtattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54153" stop="57335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54453" g_stop="54520" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57035" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="544" r_length="476" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E432027" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54453" e_stop="54520"/>
          <exon e_start="56560" e_stop="57035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTT</genome_strand>
        <mrna_strand>TTACATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAATAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTGCGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTCGTGTGCCGGTTGATATCCTAGAACAGATTCTCTGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCGAGGCTTTGCTATGCGAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAAGCTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGACGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCTCCAACATCCCCCGACTGTATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400690" ref_strand="+" ref_description="SGN-E400690 [PPC-1-H22]">
      <seq>gatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattagctgcgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgtttcgtgtgccggttgatatcctagaacagattctctgccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcgaggctttgctatgcgaaggatggctggttgctgctatacaagcccagaagtttgcgtgtgttcttcttcaatccttatacgaaggacgtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagctccaacatcccccgactgtattgttttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccaggggcaactgaatggacaactgccnattaccaaaaccgtttgccatttgttagcagcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54156" stop="57449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54456" g_stop="54520" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57149" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="655" r_length="590" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E400690" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54456" e_stop="54520"/>
          <exon e_start="56560" e_stop="57149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTT</genome_strand>
        <mrna_strand>GATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTGCGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTCGTGTGCCGGTTGATATCCTAGAACAGATTCTCTGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCGAGGCTTTGCTATGCGAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAAGTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGACGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCTCCAACATCCCCCGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGGGCAACTGAATGGACAACTGCCNATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537687" ref_strand="-" ref_description="SGN-E537687 [TUS-56-G18](-)">
      <seq>gggcccccctcgagctttgctttttccagatagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaacgaagtcgttggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtggagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttccccaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatacgaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagccccaacatcccctgactgtattgttttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccaggagcaactgaatggacaactgccaattaccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54155" stop="57423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54457" g_stop="54520" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="93" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="57123" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="657" r_length="564" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E537687" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537687" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54457" e_stop="54520"/>
          <exon e_start="56560" e_stop="57123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAA</genome_strand>
        <mrna_strand>ATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAACGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGGAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCCAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297045" ref_strand="+" ref_description="SGN-E297045 [cLEW-7-L21]">
      <seq>atagaaacgcccaaagctgagttcttgcagccatggctggaagaaaaagaagaaaaatgaagtcattggctgtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccgggtgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgattgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtctttcccgaaattctgtgacttgtttgaattctatgacccttcagtgaggcaaacttattctgctgagttaccagagttacgtggctcaaggctctgttatgcaaaggaaggctgattgctgctatacaagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="54157" stop="57211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54457" g_stop="54520" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56560" g_stop="56911" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="416" r_length="352" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E297045" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54457" e_stop="54520"/>
          <exon e_start="56560" e_stop="56911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTCGTAAGTCCTCTAAAGATTGAAACTTTATGAATCTTTATGTGTGTTTTCAAGTTTTTTTTGGGTGTTTTGAGTTTAATTTGAGTGTAAAGACTTGAATTTTAATGAATTCTATATGGGTTTTTGATTTTGTTTATGTTTGATGTTTTTTGTTGTGTGGATCCAGCTTTGATTTCACTGTTTGAGTTGAAAGGTGTGGTCTTTTTACAAGTGATTGAGTTTTAAAGAATTCACAAACACCCCCACCCACCCCAAACCCCACACCCAAAGTTTTAAAAGAGGCGGAAGAGAAATTGAGTTGAAATGAAATGAGTGGATTTAATTTATGTGATGGTTTTTTTTGGGTTTTGTTGTGTTTGAGGTGAATTTTGACAATTTTGGTGGATGCCCAAATTAGGGGTTTTATGTATATCACTTGATCTGTTTATCTGGGAATTTATGGATGTTTATATGTTAACCATTTTATACTTCAATTCAATCTGTTGTACTTAAAATGTTCACTTTTTGCATAAGATATCTGTGACTTTTTTAATGTTAGGGAATGGGCATATGTGATGTTGATGATGATGATTGATGACTTGTATAGCTGAATAAATGTTGCTATTGGGGACTTGTGTAATGATTTGTTGGTCTTAAGAGTTATTCTTACTCTGATCGAAACAGTTTATAACGGTTCTGTTTTCATAGCGGGAACATAACTGTTTATACATATAGTCAAGTGTTTCGGTGTTGTTCTGACAGTTAATCAGCTTAATGTATGTTGAATTTGTTGGATGATATAGGATATGTCGGCTTTGATGTTGTCCGTTGTGTGTTAGAAGTTACTCTAAAAGCAGTATGTTTCGGTGTCATTGATGAAAGCTACCTGTAACTAGTTAAGGATTTTGTTGTCTTTGATGTTTCCCTTAGCGCGGGAGAAAAAAAAAGTAGAAATGTTTTTATTTTAATGCTGTAGGTCGCTTGTAATTACCTAATTGAGGATATCTTCTTGTCGTCTTTTGAGGTTTCCCTTTGCGCGGGAGAAAAAAAAGCAGACTGTTTTGATTTTAATGCTGAAAGTCACTTGTAATTACCTGATTGGGGATATGTTTGTCGTCCTTGATGTTGTCCTTCGCGTGTGAGAAAAAAAAAAGCAGAATGTTTTGATTTTAATGCTGGAAGTCACGTGTAACCTGATTAAGGATATATGTCTTTGTCGTCTTTGATGTTGTCTGTTGCGTGCGAGAAGTTACTTAAAAACAGTATTTTTTGGATTCGGTGCGTGAAGCCACCAGTAACGGTGTCGCCTTTGATGTTGTCGTTTGCGTGCGAGAAAAAAAGCTGAATGTGTTGGATTTTAATGCTGGAAGTAACATGTAACCTGATTAAGGGTATGTCTTTGTCGTCTTTGATGTTGTTTGTTGCGTGTGAGAAGTTACTCAAAAGCGAAATTAGTTCACTGGTACGTATCTGTTTAGGATTTGTCGTCTTTCGTGTCGTCATTTGCGTGTGAGGAGTTGCACTAAAAGAAGAATGTTTTGGATTTTAATGCGGAAAGCCAACTGTAGCTATTTTTTATAATTGTGTATATTATTTTGCTAAGGCTCTTAAGTGAAATGCCTCATCTGGTGTGTTTACACGCGGTGACACATTTGGATTCTATTTTTGTTTCCCTCTTCTTCCTTTTGTAGTTATTGTTTCTTTGTTTTTCATAATGCTTCGTCATACTTTCTATAGTATTCCATAATTTCTTCACTTCCATTATTTCTTTTTCAATCTGTTTTGATATGCTTTCCTTGAGCCGATTTTCTATCGGAAACAGCCTCTTTGCCTCCCAAGGTAGGGGTAAGGTCTACATACACGTTACCCTCTCTAGATCCCACTTGTGGGATTACAAGTGGAGTCACACTGGGTATGTTGTTGTTGTTGGGGCGAGAGTATAAGTGGAGGTAATGTGTACTTTATATTTTGTGGATAACCTTTACTTTAAGGGTTCGGTATCTGTTTTTACTTTTTTATTTCACTATCCATTTTGAAACTAAAGATGACTTTTATATTTCTAGATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCC</genome_strand>
        <mrna_strand>ATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGGTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGATTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTCTTTCCCGAAATTCTGTGACTTGTTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGCTGAGTTACCAGAGTTACGTGGCTCAAGGCTCTGTTATGCAAAGGAAGGCTGATTGCTGCTATACAAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554308" ref_strand="+" ref_description="SGN-E554308 [cTSC-3-O10]">
      <seq>gtgacagctccaaataatggtgctgcttcaagtgaggagcgtgaagaatctgatgagcaaaactcattgttttgtgtgccggttgatattctagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgttatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttatacgaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagccccaacatcccctgactgtattgttttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccaggagcaactgaatggacaactgccaattaccaaaaccgtttgccatttgttagcagcatttggaataagttagttttctgcaatggtctcttttattgtctgagtcttactggctggttgggagtctatgatccagaagaacatacttggcttgttcgtgtggttccacctccgagatgccccgagaactttttcgtcaaaaattggtggaaaagaaaattcatggcagagcacgatggagatatctatgtgatatatacttgctctactgcaaaccccgtggtatataagttggaccaaattaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="56267" stop="57697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56567" g_stop="57397" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="831" r_length="831" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E554308" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56567" e_stop="57397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAA</genome_strand>
        <mrna_strand>GTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAAGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537852" ref_strand="+" ref_description="SGN-E537852 [TUS-56-K18](-)">
      <seq>ttcgtataaggattgaagaagaacacacgcaaagttctgggcttgttatagcagcagccagccatcctctgcataacaaagccttgagccacgtaactctggtaactcaacagaataagtttgcctcactgaagggtcatagaattcaaccaagtcaccgaatttcgggaaaaacataagccaaggtggtttattcgcaactcttacagaaatggcagcagcaagccattgcttgcaaacagcagaagcaaggatattttccttcaagtttaaccggctgagaatctgttctagaatatcaaccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="57249" stop="56344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56949" g_stop="56644" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E537852" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56949" e_stop="56644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTATAAGGATTGAAGAAGAACACACGCAAAGTTCTGGGCTTG-TATAGCAGCAACCAGCCATCCTTTGCATAACAAAGCCTTGAGCCACGTAACTCTGGTAACTCAACAGAATAAGTTTGCCTCACTGAAGGGTCATAGAATTCAACCAAGTCACCGAATTTCGGGAAAAACATAAGCCAAGGTGGTTTATTCGCAACTCTTACAGAAATGGCAGCAGCAAGCCATTGCTTGCAAACAGCAGAAGCAAGGATATTTTCCTTCAAGTTTAACCGGCTGAGAATCTGTTCTAGAATATCAACCGGC</genome_strand>
        <mrna_strand>TTCGTATAAGGATTGAAGAAGAACACACGCAAAGTTCTGGGCTTGTTATAGCAGCAGCCAGCCATCCTCTGCATAACAAAGCCTTGAGCCACGTAACTCTGGTAACTCAACAGAATAAGTTTGCCTCACTGAAGGGTCATAGAATTCAACCAAGTCACCGAATTTCGGGAAAAACATAAGCCAAGGTGGTTTATTCGCAACTCTTACAGAAATGGCAGCAGCAAGCCATTGCTTGCAAACAGCAGAAGCAAGGATATTTTCCTTCAAGTTTAACCGGCTGAGAATCTGTTCTAGAATATCAACCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208907" ref_strand="+" ref_description="SGN-E208907 [cLEC-51-F10]">
      <seq>tagaacagattctcagccggttaaacttgaaggaaaatatccttgcttctgctgtttgcaagcaatggcttgctgctgccatttctgtaagagttgcgaataaaccaccttggcttatgtttttcccgaaattcggtgacttggttgaattctatgacccttcagtgaggcaaacttattctgttgagttaccagagttacgtggctcaaggctttgatatgcaaaggatggctggttgctgctatacaagcccagaactttgcgtgtgttcttcttcaatccttataccaaggaggtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagccccaacatcccctgactgtattgttttcacaggtaagcatgtcagccccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="56358" stop="57360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56658" g_stop="57060" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E208907" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56658" e_stop="57060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCAC</genome_strand>
        <mrna_strand>TAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGATATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACCAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGGTAAGCATGTCAGCCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484397" ref_strand="+" ref_description="SGN-E484397 [cSTE-13-O13]">
      <seq>ggctggttgctgctatacaagcccagaagtttgcgtgtgttcttcttcaatccttatacgaaggacgtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagctccaacatcccccgactgtattgttttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccaggggcaactgagtggacaactgccaattaccaaaaccgtttgccatttgttagcagcatttggaataagttagttttctgcaatggtctcttttattgtctgagtcttactggctggttgggagtctatgatccagaagaacatacttggcttgttcgtgtggttccaccttcgagatgccccgagaactttttcgtcaaaaattggtggaaaggaaaattcatggcagagcacaatggagatatctatgtgatatacacttgctctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="56588" stop="57659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56888" g_stop="57359" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E484397" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56888" e_stop="57359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTG</genome_strand>
        <mrna_strand>GGCTGGTTGCTGCTATACAAGCCCAGAAGTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGACGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCTCCAACATCCCCCGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGGGCAACTGAGTGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTTCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACAATGGAGATATCTATGTGATATACACTTGCTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612243" ref_strand="+" ref_description="SGN-E612243 [62003]">
      <seq>tgcgtgtgttcttcttcaatccttatacgaaggacgtgatcaatttgccaggactagaattaacataccagatagttgctttttcggcagctccaacatcccccgactgtattgttttcacagttaagcatgtcagccccactttggttgcaattagcacatgtaaaccaggggcaactgaatggacaactgccaattaccaaaaccgtttgccatttgttagcagcatttggaataagttagttttctgcaatggtctcttttattgtctgagtcttactggctggttgggagtctatgatccagaagaacatacttggcttgttcgtgtggttccacctccgagatgccccgagaactttttcgtcaaaaattggtggaaaggaaaattcatggcagagcacaatggagatatctatgtgatatacacttgctctactgcaaatccggtggtatataagttggaccaaataaataaaatttgggtggagatgcaaactttaggtggtttgactctttttgctagtttcctttcatcccaagcaaggacagacattcttggtgtgatgagaaatagtatttatttctctaaggttcgtttttacggaaggcgttgcatatcctattccctcgataaaaaccagatactacccgcgaaaagcagtgttacgattgggggagaacaagatcctttcgagagcatttggattgatgcaccgcggacctttcagccttttgctgaaaagaattgtgacaaagggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="56619" stop="57976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56919" g_stop="57675" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E612243" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56919" e_stop="57675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAA-CAGATACTACCCGCG-AAAGCAGTGTTACGATT-GGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAG</genome_strand>
        <mrna_strand>TGCGTGTGTTCTTCTTCAATCCTTATACGAAGGACGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCTCCAACATCCCCCGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGGGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACAATGGAGATATCTATGTGATATACACTTGCTCTACTGCAAATCCGGTGGTATATAAGTTGGACCAAATAAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTACGGAAGGCGTTGCATATCCTATTCCCTCGATAAAAACCAGATACTACCCGCGAAAAGCAGTGTTACGATTGGGGGAGAACAAGATCCTTTCGAGAGCATTTGGATTGATGCACC-GCGGACCTTTCAGCCTTTTGCTGAAAAGAATTGTGACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537854" ref_strand="-" ref_description="SGN-E537854 [TUS-56-K18]">
      <seq>acatactggctgtttcgtgtgttccacttccgagatgccccgagaacttttcgtcaaaaattggtgaaaggaaaattcatggcagagcacgatggagatatctatgtgatatatacttgctctactgcaaaccccgtggtatataagttggaccaaattaataaaatttgggtggagatgcaaactttaggtggtttgactctttttgctagtttcctttcatcccaagcaaggacagacattcttggtgtgatgagaaatagtatttatttctctaaggttcgtttttatggaaggcgctgcatatcctattctctcgataaaaacagatactacccgcgaaagcagtgttacgattggggagaacaagatccttttgagagcatttggattgatgcaccggcggacctttcagcctttacctgaaaagatttgtgacagagggcctcaaatacaaggtccctcttcaaacggcttcatcgagagctgcagatgtagtcaagtagccaccttgctgcggaaaaagtgaaagcgaaccgatggttcagatgtatcagtaaatgttgtcaaaagacctggaaggcatgataaaggacagggttctaatcatgtcatctctcaatttatagtactttataagttgtcattaaacaatttccttcagtgtagataacattttagggtaatggtgtagttgaatctgttgaagtttaatttaagctgactaaataagagctttaggtacttctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="56929" stop="59457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57229" g_stop="57675" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57676" i_stop="58850" i_length="1175">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58851" g_stop="59162" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="755" r_length="312" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E537854" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537854" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57229" e_stop="57675"/>
          <exon e_start="58851" e_stop="59162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAGGTACTATTCTTTTCTGTTAGATTTTTACTTCTTCTAGTCATGAGGTTGAATATAAGAATTATCTTTGCTTGACTGAAATCATAAACTGTTTATAACAGCATGCATGTCCTAGAAAGTACGTGTGTGTTACGGATATGTACTCGATCTTTAACAATGCTCGATGAAGTTGTTGATTTTAAGATTACTATGATAGCTAAGTGCATTTTTGTTGGTTACATTTCTATTTCACTAGTTGCTTTGACCCTCCAAAATTGTTGCTGCACCCGTATCGGATCCTCAATAAGTGCATAGATTTTGGAGGATCCGACACACAGCGGGAAGTACTTTTGAATAGTCTATGCAACTTGGCCTACAAGATCTCTTATCTTTTGAAGGCTGAAACTTCACATCTTACAAGTCACCTTGGGAAGTGTTTTTCTCAAGGATAAAGTGTTCCTGGCTTAACCAAATGACATCTCATTTGGCAAAGTTCATAGTTTTAAAAGTATGAAACATTTTATCATAAACCCCCCTGGTTTCTAATCGAGAAGTTCCAAGGCAAGATCATGTTTATGTTATTTAAATTGCTATAGCACTAGCCTTTAAGAGGACCCTATAGCTCTAATTGATTGTGGATCCTTCTGCTATGTCTTTCTTTCTTCCTCGACTTTGCAAATGGTAGACTATGTTTGGCATCTGTAGACTCTTAAATTAGGCAATGATAAGGACACAACAGCAGCGTGTAAGTGTGTTTGTAGTTCAGAGAAGGTATTGACATGTTGGATTGAGAGATCCAGCTGAACAGTATGGAAGATTGTGTTTCAATGACTAAGAGGCTCGGAGCTCTGTGTTACTATGTAACATCAGATCCTTCATGTGACCTGACGTGCAACGTCAAATGGATGTGGAATAAGTATGGGTACCTAGTTCAAATTCTTCAAACTATCTAGTTCTTTTTTCTGAATGCGCTTTACTGCTTTTCCTTACTAATGACATGTTTTCTTCACTGCATATTTCCTTCTTCATAACTACTTTGATTTTCTGCGTACACTCTACACTGGATATGTTGTTGTTGCATCGCAGATCGTCTTTTGGGACTACACTGGGTTTGTTGTAGTTGTCGTATGTCTTTAGTCAACTATTTCTTCATATTCAAAATTACTATATACTAACTTCTGGCTAATCATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTATGCTG</genome_strand>
        <mrna_strand>ACATAC-TGGCTGTTTCGTGT-GTTCCACTTCCGAGATGCCCCGAGAACTTTT-CGTCAAAAATTGGT-GAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391455" ref_strand="+" ref_description="SGN-E391455 [TUS-16-A9](-)">
      <seq>agttggaccaaattaataaaatttgggtggagatgcaaactttaggtggtttgactctttttgctagtttcctttcatcccaagcaaggacagacattcttggtgtgatgagaaatagtatttatttctctaaggttcgcctttatggaaggcgctgcatatcctattctctcgataaaaacagatactacccgcgaaagcagtgttacgattggggagaacaagatccttttgagagcatttggattgatgcaccggcggacctttcagcctttacctgaaaagatttgtgacagagggcctcaaatacaaggtccctcttcaaacggcttcatcgagagctgcagatgtagtcaagtagccaccttgctgcggaaaaagtgaaagcgaaccgatggttcagatgtatcagtaaatgttgtcaaaagacctggaaggcatgataaaggacagggttctaatcatgtcatctctcaatttatagtactttataagttgtcattaaacaatttccttcagtgtagataacattttagggtaatggtgtagttgaatctgttgaagtttaatttaagctgactaaataagagcgttaggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="57078" stop="59451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57378" g_stop="57675" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57676" i_stop="58850" i_length="1175">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58851" g_stop="59148" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="596" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="608"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E391455" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57378" e_stop="57675"/>
          <exon e_start="58851" e_stop="59148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAGGTACTATTCTTTTCTGTTAGATTTTTACTTCTTCTAGTCATGAGGTTGAATATAAGAATTATCTTTGCTTGACTGAAATCATAAACTGTTTATAACAGCATGCATGTCCTAGAAAGTACGTGTGTGTTACGGATATGTACTCGATCTTTAACAATGCTCGATGAAGTTGTTGATTTTAAGATTACTATGATAGCTAAGTGCATTTTTGTTGGTTACATTTCTATTTCACTAGTTGCTTTGACCCTCCAAAATTGTTGCTGCACCCGTATCGGATCCTCAATAAGTGCATAGATTTTGGAGGATCCGACACACAGCGGGAAGTACTTTTGAATAGTCTATGCAACTTGGCCTACAAGATCTCTTATCTTTTGAAGGCTGAAACTTCACATCTTACAAGTCACCTTGGGAAGTGTTTTTCTCAAGGATAAAGTGTTCCTGGCTTAACCAAATGACATCTCATTTGGCAAAGTTCATAGTTTTAAAAGTATGAAACATTTTATCATAAACCCCCCTGGTTTCTAATCGAGAAGTTCCAAGGCAAGATCATGTTTATGTTATTTAAATTGCTATAGCACTAGCCTTTAAGAGGACCCTATAGCTCTAATTGATTGTGGATCCTTCTGCTATGTCTTTCTTTCTTCCTCGACTTTGCAAATGGTAGACTATGTTTGGCATCTGTAGACTCTTAAATTAGGCAATGATAAGGACACAACAGCAGCGTGTAAGTGTGTTTGTAGTTCAGAGAAGGTATTGACATGTTGGATTGAGAGATCCAGCTGAACAGTATGGAAGATTGTGTTTCAATGACTAAGAGGCTCGGAGCTCTGTGTTACTATGTAACATCAGATCCTTCATGTGACCTGACGTGCAACGTCAAATGGATGTGGAATAAGTATGGGTACCTAGTTCAAATTCTTCAAACTATCTAGTTCTTTTTTCTGAATGCGCTTTACTGCTTTTCCTTACTAATGACATGTTTTCTTCACTGCATATTTCCTTCTTCATAACTACTTTGATTTTCTGCGTACACTCTACACTGGATATGTTGTTGTTGCATCGCAGATCGTCTTTTGGGACTACACTGGGTTTGTTGTAGTTGTCGTATGTCTTTAGTCAACTATTTCTTCATATTCAAAATTACTATATACTAACTTCTGGCTAATCATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAG</genome_strand>
        <mrna_strand>AGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGCCTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537861" ref_strand="-" ref_description="SGN-E537861 [TUS-56-K22]">
      <seq>taaaaacagatactacccgcgaaagcagtgttaagattggggagaacaagatccttttgagagcatttggattgatgcaccggcggacctttcagcctttacatgaaaagatttgtgacagagggcctcaaatacaaggtccctcttcaaacggcttcatcgagagctgcagatgtagtcaagtagccaccttgctgcggaaaaagtgaaagcgaaccgatggttcagatgtatcagtaaatgttgtcaaaagacctggaaggcatgataaaggacagggttctaatcatgtcatctctcaatttatagtactttataagttgtcattaaacaatttccttcagtgtagataacattttagggtaatggtgtagttgaatctgttgaagtttaatttaagctgactaaataagagctttaggtacttctaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="57253" stop="59459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57553" g_stop="57675" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57676" i_stop="58850" i_length="1175">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58851" g_stop="59162" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="435" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E537861" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57553" e_stop="57675"/>
          <exon e_start="58851" e_stop="59162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAGGTACTATTCTTTTCTGTTAGATTTTTACTTCTTCTAGTCATGAGGTTGAATATAAGAATTATCTTTGCTTGACTGAAATCATAAACTGTTTATAACAGCATGCATGTCCTAGAAAGTACGTGTGTGTTACGGATATGTACTCGATCTTTAACAATGCTCGATGAAGTTGTTGATTTTAAGATTACTATGATAGCTAAGTGCATTTTTGTTGGTTACATTTCTATTTCACTAGTTGCTTTGACCCTCCAAAATTGTTGCTGCACCCGTATCGGATCCTCAATAAGTGCATAGATTTTGGAGGATCCGACACACAGCGGGAAGTACTTTTGAATAGTCTATGCAACTTGGCCTACAAGATCTCTTATCTTTTGAAGGCTGAAACTTCACATCTTACAAGTCACCTTGGGAAGTGTTTTTCTCAAGGATAAAGTGTTCCTGGCTTAACCAAATGACATCTCATTTGGCAAAGTTCATAGTTTTAAAAGTATGAAACATTTTATCATAAACCCCCCTGGTTTCTAATCGAGAAGTTCCAAGGCAAGATCATGTTTATGTTATTTAAATTGCTATAGCACTAGCCTTTAAGAGGACCCTATAGCTCTAATTGATTGTGGATCCTTCTGCTATGTCTTTCTTTCTTCCTCGACTTTGCAAATGGTAGACTATGTTTGGCATCTGTAGACTCTTAAATTAGGCAATGATAAGGACACAACAGCAGCGTGTAAGTGTGTTTGTAGTTCAGAGAAGGTATTGACATGTTGGATTGAGAGATCCAGCTGAACAGTATGGAAGATTGTGTTTCAATGACTAAGAGGCTCGGAGCTCTGTGTTACTATGTAACATCAGATCCTTCATGTGACCTGACGTGCAACGTCAAATGGATGTGGAATAAGTATGGGTACCTAGTTCAAATTCTTCAAACTATCTAGTTCTTTTTTCTGAATGCGCTTTACTGCTTTTCCTTACTAATGACATGTTTTCTTCACTGCATATTTCCTTCTTCATAACTACTTTGATTTTCTGCGTACACTCTACACTGGATATGTTGTTGTTGCATCGCAGATCGTCTTTTGGGACTACACTGGGTTTGTTGTAGTTGTCGTATGTCTTTAGTCAACTATTTCTTCATATTCAAAATTACTATATACTAACTTCTGGCTAATCATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTATGCTG</genome_strand>
        <mrna_strand>TAAAAACAGATACTACCCGCGAAAGCAGTGTTAAGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACATGAAAAGATTTGTGACAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265397" ref_strand="-" ref_description="SGN-E265397 [cLEI-9-A10]">
      <seq>tactacccgcgaaagcagtgttacgattggggagaacaagatccttttgagagcatttggattgatgcaccggcggacctttcagcctttacctgaaaagatttgtgacagagggcctcaaatacaaggtccctcttcaaacggcttcatcgagagctgcagatgtagtcaagtagccaccttgctgcggaaaaagtgaaagcgaaccgatggttcagatgtatcagtaaatgttgtcaaaagacctggaaggcatgataaaggacagggttctaatcatgtcatctctcaatttatagtactttataagttgtcattaaacaatttccttcagtgtagataacattttagggtaatggtgtagttgaatctgttgaagtttaatttaagctgactaaataagagctttaggtacttctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="57263" stop="59457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57563" g_stop="57675" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57676" i_stop="58850" i_length="1175">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58851" g_stop="59161" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="424" r_length="311" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E265397" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57563" e_stop="57675"/>
          <exon e_start="58851" e_stop="59161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAGGTACTATTCTTTTCTGTTAGATTTTTACTTCTTCTAGTCATGAGGTTGAATATAAGAATTATCTTTGCTTGACTGAAATCATAAACTGTTTATAACAGCATGCATGTCCTAGAAAGTACGTGTGTGTTACGGATATGTACTCGATCTTTAACAATGCTCGATGAAGTTGTTGATTTTAAGATTACTATGATAGCTAAGTGCATTTTTGTTGGTTACATTTCTATTTCACTAGTTGCTTTGACCCTCCAAAATTGTTGCTGCACCCGTATCGGATCCTCAATAAGTGCATAGATTTTGGAGGATCCGACACACAGCGGGAAGTACTTTTGAATAGTCTATGCAACTTGGCCTACAAGATCTCTTATCTTTTGAAGGCTGAAACTTCACATCTTACAAGTCACCTTGGGAAGTGTTTTTCTCAAGGATAAAGTGTTCCTGGCTTAACCAAATGACATCTCATTTGGCAAAGTTCATAGTTTTAAAAGTATGAAACATTTTATCATAAACCCCCCTGGTTTCTAATCGAGAAGTTCCAAGGCAAGATCATGTTTATGTTATTTAAATTGCTATAGCACTAGCCTTTAAGAGGACCCTATAGCTCTAATTGATTGTGGATCCTTCTGCTATGTCTTTCTTTCTTCCTCGACTTTGCAAATGGTAGACTATGTTTGGCATCTGTAGACTCTTAAATTAGGCAATGATAAGGACACAACAGCAGCGTGTAAGTGTGTTTGTAGTTCAGAGAAGGTATTGACATGTTGGATTGAGAGATCCAGCTGAACAGTATGGAAGATTGTGTTTCAATGACTAAGAGGCTCGGAGCTCTGTGTTACTATGTAACATCAGATCCTTCATGTGACCTGACGTGCAACGTCAAATGGATGTGGAATAAGTATGGGTACCTAGTTCAAATTCTTCAAACTATCTAGTTCTTTTTTCTGAATGCGCTTTACTGCTTTTCCTTACTAATGACATGTTTTCTTCACTGCATATTTCCTTCTTCATAACTACTTTGATTTTCTGCGTACACTCTACACTGGATATGTTGTTGTTGCATCGCAGATCGTCTTTTGGGACTACACTGGGTTTGTTGTAGTTGTCGTATGTCTTTAGTCAACTATTTCTTCATATTCAAAATTACTATATACTAACTTCTGGCTAATCATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTATGCT</genome_strand>
        <mrna_strand>TACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555224" ref_strand="+" ref_description="SGN-E555224 [cTSC-6-M7]">
      <seq>catttcttccagggcctcaaatacaaggtccctcttcaaacggcttcatcgagagctgcagatgtagtcaagtagccaccttgctgcggaaaaagtgaaagcgaaccgatggttcagatgtatcagtaaatgttgtcaaaagacctggaaggcatgataaaggacagggttctaatcatgtcatctctcaatttatagtactttataagttgtcattaaacaatttccttcagtgtagataacattttagggtaatggtgtagttgaatctgttgaagtttaatttaagctgactaaataagagctttaggtaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="58539" stop="59451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58839" g_stop="59148" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="340"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E555224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58839" e_stop="59148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAG</genome_strand>
        <mrna_strand>CATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234339" ref_strand="+" ref_description="SGN-E234339 [cLEL-8-C9](-)">
      <seq>ctcttcaaacggcttcatcaagagatgcaaatgtagtcaagtaaccaccctgctgcggaaaaagtgaaagcgaaccgatggttcaaatgtatcagtaaatgttgtcaaaaaacctggaaggcatgataaaggacagggttctaatcatgtcatctctcaatttatagtactttataagttgtcatttaacaatttccttcagtgtagataaccatttagggtaatggtgtagttgaatctgttaaagtttaatttaagctgactaaataaaagccttaggtgcttctatgctgtgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="58570" stop="59464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58870" g_stop="59163" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="319"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E234339" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58870" e_stop="59163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTATGCTGT</genome_strand>
        <mrna_strand>CTCTTCAAACGGCTTCATCAAGAGATGCAAATGTAGTCAAGTAACCACCCTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAAATGTATCAGTAAATGTTGTCAAAAAACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTTAACAATTTCCTTCAGTGTAGATAACCATTTAGGGTAATGGTGTAGTTGAATCTGTTAAAGTTTAATTTAAGCTGACTAAATAAAAGCCTTAGGTGCTTCTATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239141" ref_strand="+" ref_description="SGN-E239141 [cLEL-9-F15](-)">
      <seq>aagtgcagatattgtggaatatatacaggcaacttatgctcgttaagataatttcacaggagaatacatgctatgaggctcaaagttacttctcttatgaatgaactgaagataaatttttatatggagatgagtatataaaaggaaagatgttctggagtacattgatgttccatctacctacatcctcaccaaatctgtgttttcagtctgtaaaagtaaatggctttgacactgtccaaaagattggcctatgttactaaaaaccaactggaaacttcatccattgcccactcttcacattattattaattcaatatgttattatttcatgtcgtgttgtttgtattaacagtcaacttatgttaaatattttatgttagaccgtagcttggctatataggtgattaactttgtaaatatcaactctccagagaaaaaattatggttcagaatgtatgacttgtatatctagtcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="63779" stop="64948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64079" g_stop="64125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64126" i_stop="64211" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64212" g_stop="64654" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="490" r_length="443" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E239141" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64079" e_stop="64125"/>
          <exon e_start="64212" e_stop="64654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCAGATATTGTGGAATATATACAGGCAACTTATGCTCGTTAAGGTGTGAGGCCTTCTTTTTTCTGTAGTTCAATTTCTTAATGTCTCTGTAACAAGAGGTCAGATTTGTCTGAGCTGCTTTCTTTCTAGATAATTTCACAGGAGAATACATGCTATGAGGCTCAAAGTTACTTCTTTTATGAATGAACTGAAGATAAATTTTTATATGGAGATGAGTATATAAAAGGAAAGATGTTCTGGAGTACATTGATGTTCCATCTACCTACATCCTCACCAAATCTGTGTTTTCAGTCTGTAAAAGTAAATGGCTTTGACACTGTCCAAAAGATTGGCCTATGTTACTAAAAACCAACTGGAAACTTCATCCATTGCCCACTCTTCACATTATTATTAATTCAATATGTTATTATTTCATGTCGTGTTGTTTGTATTAACAGTCAACTTATGTTAAATATTTTATGTTAGACCGTAGCTTGGCTATATAGGTGATTAACTTTGTAAATATCAACTCTCCAGAGAAAAAATTATGGTTCAGAATGTATGACTTGTATATCTAGTCCAACAAACTGTGA</genome_strand>
        <mrna_strand>AAGTGCAGATATTGTGGAATATATACAGGCAACTTATGCTCGTTAAG......................................................................................ATAATTTCACAGGAGAATACATGCTATGAGGCTCAAAGTTACTTCTCTTATGAATGAACTGAAGATAAATTTTTATATGGAGATGAGTATATAAAAGGAAAGATGTTCTGGAGTACATTGATGTTCCATCTACCTACATCCTCACCAAATCTGTGTTTTCAGTCTGTAAAAGTAAATGGCTTTGACACTGTCCAAAAGATTGGCCTATGTTACTAAAAACCAACTGGAAACTTCATCCATTGCCCACTCTTCACATTATTATTAATTCAATATGTTATTATTTCATGTCGTGTTGTTTGTATTAACAGTCAACTTATGTTAAATATTTTATGTTAGACCGTAGCTTGGCTATATAGGTGATTAACTTTGTAAATATCAACTCTCCAGAGAAAAAATTATGGTTCAGAATGTATGACTTGTATATCTAGTCCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238643" ref_strand="+" ref_description="SGN-E238643 [cLEL-9-F15](-)">
      <seq>atgctcgttaagatattttcacaggagaatacatgctatgaggctcaaagttacttctcttatgaatgaactgaagataaatttttatatggagatgagtatataaaaggaaagatgttctggagtacattgatgttccatctacctacatcctcaccaaatctgtgttttcagtctgtaaaagtaaatggctttgacactgtccaaaagattggcctatgttactaaaaaccaactggaaacttcatccattgcccactcttcacattattattaattcaatatgttattatttcatgtcgtgttgtttgtattaacagtcaacttatgttaaatattttatgttagaccgtagcttggctatataggtgattaactttgtaaatatcaactctccagagaaaaaattatggttcagcccgtatgacttgtatatctagtccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="63910" stop="83180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64114" g_stop="64125" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64126" i_stop="64211" i_length="86">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64212" g_stop="64654" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="455" r_length="443" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64655" i_stop="65085" i_length="431">
            <donor d_prob="0.900" d_score="0.82"/>
            <acceptor a_prob="0.522" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65086" g_stop="65091" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="461" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E238643" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64114" e_stop="64125"/>
          <exon e_start="64212" e_stop="64654"/>
          <exon e_start="65086" e_stop="65091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCGTTAAGGTGTGAGGCCTTCTTTTTTCTGTAGTTCAATTTCTTAATGTCTCTGTAACAAGAGGTCAGATTTGTCTGAGCTGCTTTCTTTCTAGATAATTTCACAGGAGAATACATGCTATGAGGCTCAAAGTTACTTCTTTTATGAATGAACTGAAGATAAATTTTTATATGGAGATGAGTATATAAAAGGAAAGATGTTCTGGAGTACATTGATGTTCCATCTACCTACATCCTCACCAAATCTGTGTTTTCAGTCTGTAAAAGTAAATGGCTTTGACACTGTCCAAAAGATTGGCCTATGTTACTAAAAACCAACTGGAAACTTCATCCATTGCCCACTCTTCACATTATTATTAATTCAATATGTTATTATTTCATGTCGTGTTGTTTGTATTAACAGTCAACTTATGTTAAATATTTTATGTTAGACCGTAGCTTGGCTATATAGGTGATTAACTTTGTAAATATCAACTCTCCAGAGAAAAAATTATGGTTCAGAATGTATGACTTGTATATCTAGTCCAACAAACTGTGAGTAGCCTTTGGTGTTTATATTTTTCATTTTGGTAGAAAAGATGCTCCATCTCTTCACTTATGCAACTCGTTGACTTATAATATCAATTACGAGTGGTGCTAATGAGATGTTAAGGTTAATTTTCCCATTATTGGCTAATTCAACTTCTTAAATTGTTAAAGCTTATTCTGGAGTAACATGCCTTATAAACCACTTCATCACCCTTCCATTTGCACGGTATAGCAGGTATGGCCATCAGGTCTGTCATCCTCAAGTTTCTCTCGTTCATGTTGTTAGTTCTTCTTTTGATTACAATCAGCTGAGATATGTCCACGAATTGTAATTATTCTACCTAACTGATGCAACATGTATTTTCGTGTTCTGTAATTCTGTTGACCGTTTATGTGCTCCATCTACTTTATTCATCTTTTGGTGCCTACCTATACTTGAAGGAAAAT</genome_strand>
        <mrna_strand>ATGCTCGTTAAG......................................................................................ATATTTTCACAGGAGAATACATGCTATGAGGCTCAAAGTTACTTCTCTTATGAATGAACTGAAGATAAATTTTTATATGGAGATGAGTATATAAAAGGAAAGATGTTCTGGAGTACATTGATGTTCCATCTACCTACATCCTCACCAAATCTGTGTTTTCAGTCTGTAAAAGTAAATGGCTTTGACACTGTCCAAAAGATTGGCCTATGTTACTAAAAACCAACTGGAAACTTCATCCATTGCCCACTCTTCACATTATTATTAATTCAATATGTTATTATTTCATGTCGTGTTGTTTGTATTAACAGTCAACTTATGTTAAATATTTTATGTTAGACCGTAGCTTGGCTATATAGGTGATTAACTTTGTAAATATCAACTCTCCAGAGAAAAAATTATGGTTCAGCCCGTATGACTTGTATATCTAGTCCAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400897" ref_strand="+" ref_description="SGN-E400897 [PPC-2-O20]">
      <seq>tctctttggcctttcagttctaaaataatcttcaagaatcaactcatcatatacatgtaatcatactcttttttcaggggtcgtttgattgggtataaattattacgagactataacgaattatagatcagcaatggctgatgttggtggaatttcagtttgggtgatcaatatatgtgtagttcttctactcaatctaatttctactgcatttggtgatgctttgggagtcaaatttggttacacaggcccagtaggcccaaatggttggggaaggttgagcccaacatattcagtctgctcaaatggcaaatcacagtccccaattaacataattagtcataattgtgctgttaacaagaagttaaagcccttgattatgcaatataatcattctgaagttgctactttggttgataatggctttaatgttgggataaaatatggtgaaaatgcaggaagtttaattgtggatggtaaagcttataactttaagcaaatgcattggcattccccttctgaacatacaattgatggcaatcgatatgcagcagagcttcatctagttcattttgctcaagacaatactatagcaggtttatcaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="67774" stop="72115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68070" g_stop="68193" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68194" i_stop="69533" i_length="1340">
            <donor d_prob="0.967" d_score="0.76"/>
            <acceptor a_prob="0.951" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69534" g_stop="69630" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="215" r_length="97" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69631" i_stop="71166" i_length="1536">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71167" g_stop="71387" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="436" r_length="221" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71388" i_stop="71490" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71491" g_stop="71597" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="543" r_length="107" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71598" i_stop="71749" i_length="152">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71750" g_stop="71815" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="609" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E400897" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68070" e_stop="68193"/>
          <exon e_start="69534" e_stop="69630"/>
          <exon e_start="71167" e_stop="71387"/>
          <exon e_start="71491" e_stop="71597"/>
          <exon e_start="71750" e_stop="71815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTGGCCTTTCAGTTCTAAAATAATCTTCAAGAATCAACTCATAAATATACATGTAATCATACT-TTTTTTCGAGGGTCATTTGATTGGGTACAAGTTATTACGAGATTATTGTAGATCAGGTATTTATTCTTTTTCTTCAAATTGAAGATCCTATTGTAGTACCTTTTGATCAAGTAAATCAAGCTTACAAAAAATAATTGTATTGATGTATCGTATTCTCTCAATAGAATCATCACAAGAAAATAATATTAAGAAAATTTTGTTACGACTAATTTATCTATACGTTCCATAAAAATGGAATCGATATCCTAAAATACAATAAAATAAATTACATGTTACAACTTGTTAAAACATACTTACAAAATTTACTGGCTCGATGTCACGGGTCACGTAATAACACATTTTCAGAAAAACAATATTAGTACTCTAAAAAAATAACTATATTTATATTCCTTCTAACAATATATCATAGTAATAGTAATAAAAAATGCACCTCTCAAAAATTTCCTAATATTCCTTGAAAATTGTGATGCCTACATTGGTTTGATGACCCTCATATTAAGGTTATCTGTTTTGAACATCGATTAATTTAAATTTATAACTATTTTTACTAAAAATAATTATAGTTTTAGAATTTACATATAGGAATTTTGATTAAGAATAAAGAAATCACTCTTGCTAAAATTCTTAAATGAGATTCTACTCTTAGTAAATAACTTTCATCGCAAGAACTAAATATTACAACCAAAAAAATAAAATAAAGAGTTAAGATCTTGCTTAGTTTTTAAGCATCTCATATGAACCATATTATAAAAATAAAAAGTTCAAAACTATATAGTACAACAAAGTTAAATAAATTGTTCTTTCAGAAGAAGGAAAAAAAATTGTTTGTAAAACAAACTTTTCTATTAAAAGCGATTTTATTTTTAAGTTCAGATCTAAAATCTCTGATTAAAAATAAAAAGGTTTATCTTTTTTGATGGTCACAATTAGTAACTAAGACGATAAGAATTCATGTCCATGTAAAATTAAAGTAAAAAAAAAAAAGTCATTGATCGAAATTTTCACGCGTGACATAAAATTGAGAATGCATAATTATATGAGTTTAATTTATATACACCGTCAATATTTTTAAAAAATATATATATATATTTTTACTTGTTAAATTAGAAAAGAACTATATCCTCAAACAAAAAAAAGCAAAAGCAAATAATGGACAACTGCTGATATTATATAGTAAAAAGGTTTGTCCAAAAAGCTTATAAATAAAGGACAAAAATTGAGTTAATGTTCCAACAAAAAATAAAATAAAAAATTCTCATACATTGAGTTGTTTTTGCTTCAGATATCCTCTGTAAGTCATCAATAATACAAATTGTTTTTCAAATTTTTTGTTTCATTTAAATATTTGATTTTTGGTTTTTGCAAGAAAATTGATACATTGGATTTTATTTTTTAGTTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTGGTAAGTCCACATATCTTTCTTTCGTATTACGGCTTTATCTGAACTCAATATTTTTTTACGTTGTAAAGCTAGTATGTCCAACAATATCGAAATATTCTACGGATATGAGTTATAGTGGGATGGTTGAGAACTGTAATCTTTTATCCTTCCTGAAAGGTCTTGGGCTCAAGTTTTTTAATGTGTGAGAATTCAGATTAGTTTTTGAATGGGCCCTACAATGTGTGAATTCAGATTAGTCGAACTCTAATATAGATATTGAATATCGAATGACAAAACAATGTGTTTTACCTTATTTTGAATATGGAAATCAATTAAGTGGCTTTGGGACCATGTATAGCAAATGTGATAGATGAAATTCCTTCACCCTTTGGACCGATGTGCAGTTTAGTTTACGGATTCAACAAAGCGCATAAAGTTTGGTTAAACTTTGTATTTGTCTTGAAAAAACCTAACATGTTTTAGAACCCTATAACTTAGTATGGTTAAAATATTAAACCCTGAATTTCCGATTGCCCATTCTTAAATAGATGTCTCGAATGAATTTGAATCATGTAAATTGAAAACCTATGATAAGAAGTACCTCCTCCCTTAATTGTTCCTACGTAATACAAATCAAAATTAATCTAGCTAATAGATTTAAAATATTAAATAATTAATAACTTTTTTTAAAAAAAGTATACGCAATAAAACCATCCTAGTTTGAAGCTTTGCTTTAATTGTTGAAAAATCTTTGACGTATTTGTAATGAGAATATGCTTTTAAAAGAACAAAACATCATGGTCATGATTTTTAATTAGTTGTCTAAAGTTCTTACTGTTTGTGTAGCTTTTTTGATTTTTTTATATACTATGATTTTAAAAAGTGTACATAAAATCTTTGGAAATTGTTTCTTTTATTTAATTTAACTTATATGTATTATTATGTCATCTTTAATTTACTTGTTATAACCGATAATTTATATTATTTTAAAAAAAAATTGTAGCTGTAGATATCATCTGACTAAATAGATGTCTGAAAAAGTCCACTAGTGAAATTTTTTGTATTATATCTATCTAAATATACAAATATTTCTACCATAAATACCGTTTCACTCTATAGTTTGAAAAAATTAAGTACATATTATCTCACTAATAATGACTTTGCATCATATATCAAGTTGGATACATGTATTAAAGATACTAGGTATATACTGAAACACAGATAAATAGGAGAAAAAGCGAGCGACAGAATCATTGTATCCTAGATATATATATCTTTGATACTATACATTCTAAAATGAAGATCCACAGAGAGCAAGAAGCGAGCGAGAGGGTTTAGAGAAGAGAGAGCGGGAGAGTTATTGTATCCTAGATACGTAAGAATCACGTTTGGATACAAGGAACAAACTACACTTAATTTGAAATACATGTATGTGGCAAAGTAAATATGGTATAGAACATAATTTTGAAAAACTAAATTGAAGGCGCGATATTATTAAGCCCTAAACTAGTGTGATTTGTATTATTTTCTCTAACTTAAAAACTCTTTTTGGGTTAGGTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGGGTTAGTTTTCTTAATCTTTTTTATCCTCCAAATTACTTACATATTTTTTCCATTTATTATTAAATTTTCATGAGATTAATTTAATAATTACCAATATTTGCAGATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACAGTATGATTATTCTTTACTTTTCTTTCATTTGTATATAATTTAATAAAATAAATATATTTTACTTTATCAATTATAATGAATTTAATGTGTTTTACTAATGAAAGAAAAATTATATTATATTTTAATAAATATTTTGTTATTTTATTTTTCAGATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCT</genome_strand>
        <mrna_strand>TCTCTTTGGCCTTTCAGTTCTAAAATAATCTTCAAGAATCAACTCAT-CATATACATGTAATCATACTCTTTTTTCAGGGGTCGTTTGATTGGGTATAAATTATTACGAGACTA---TA-A-C-G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATAGATCAGCAATGGCTGATGTTGGTGGAATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTACTCAATCTAATTTCTACTGCATTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTGAGCCCAACATATTCAGTCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGTCATAATTGTGCTGTTAACAAGAAGTTAAAGCCCTTGATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGG.......................................................................................................ATAAAATATGGTGAAAATGCAGGAAGTTTAATTGTGGATGGTAAAGCTTATAACTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAATCG........................................................................................................................................................ATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGACAATACTATAGCAGGTTTATCAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548314" ref_strand="+" ref_description="SGN-E548314 [TUS-60-A23]">
      <seq>ttcagatatcctctttttttggaatagcaatggctgatgttggtgggatttcagtttgggtgatcaatatatgtgtagttcttctgctcaatctattttctactgcatctggtgatgctttgggagtcaaatttggttacacaggcccagtaggcccaaatggttggggaaggttaagcccaacatattcagcctgctcaaatggcaaatcacagtccccaattaacataattagccataattgtgttgttaacaagaatttaaagcccttaattatgcaatataatcattctgaagttgctactttggttgataatggctttaatgttgggataaaatatggtgataatgcaggaagtttaattgtggatggtaaaacttacaattttaagcaaatgcattggcattccccttctgaacatacaattgatggcaaacaatatgcagcagagcttcatctagttcattttgctcaagataatactatagcagttttatcaattctcttccatttgggccatcctgatcctctaatgaccaagcttcaaaacaaactgaatgagctagcaagggatgtagcaacacataaagaaacacaagtgcagcttggagtaattgatacacatgaaataaggaaacattctcacaaatattactcatacactggttctttaacaactccaccatgcactgaaattgtctcttggtacattcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="69225" stop="73120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69415" g_stop="69428" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69429" i_stop="69533" i_length="105">
            <donor d_prob="0.736" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69534" g_stop="69630" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="111" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69631" i_stop="71166" i_length="1536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71167" g_stop="71387" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="332" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71388" i_stop="71490" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71491" g_stop="71597" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="439" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71598" i_stop="71749" i_length="152">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71750" g_stop="71852" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="542" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71853" i_stop="72644" i_length="792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72645" g_stop="72819" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="717" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E548314" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69415" e_stop="69428"/>
          <exon e_start="69534" e_stop="69630"/>
          <exon e_start="71167" e_stop="71387"/>
          <exon e_start="71491" e_stop="71597"/>
          <exon e_start="71750" e_stop="71852"/>
          <exon e_start="72645" e_stop="72819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATATCCTCTGTAAGTCATCAATAATACAAATTGTTTTTCAAATTTTTTGTTTCATTTAAATATTTGATTTTTGGTTTTTGCAAGAAAATTGATACATTGGATTTTATTTTTTAGTTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTGGTAAGTCCACATATCTTTCTTTCGTATTACGGCTTTATCTGAACTCAATATTTTTTTACGTTGTAAAGCTAGTATGTCCAACAATATCGAAATATTCTACGGATATGAGTTATAGTGGGATGGTTGAGAACTGTAATCTTTTATCCTTCCTGAAAGGTCTTGGGCTCAAGTTTTTTAATGTGTGAGAATTCAGATTAGTTTTTGAATGGGCCCTACAATGTGTGAATTCAGATTAGTCGAACTCTAATATAGATATTGAATATCGAATGACAAAACAATGTGTTTTACCTTATTTTGAATATGGAAATCAATTAAGTGGCTTTGGGACCATGTATAGCAAATGTGATAGATGAAATTCCTTCACCCTTTGGACCGATGTGCAGTTTAGTTTACGGATTCAACAAAGCGCATAAAGTTTGGTTAAACTTTGTATTTGTCTTGAAAAAACCTAACATGTTTTAGAACCCTATAACTTAGTATGGTTAAAATATTAAACCCTGAATTTCCGATTGCCCATTCTTAAATAGATGTCTCGAATGAATTTGAATCATGTAAATTGAAAACCTATGATAAGAAGTACCTCCTCCCTTAATTGTTCCTACGTAATACAAATCAAAATTAATCTAGCTAATAGATTTAAAATATTAAATAATTAATAACTTTTTTTAAAAAAAGTATACGCAATAAAACCATCCTAGTTTGAAGCTTTGCTTTAATTGTTGAAAAATCTTTGACGTATTTGTAATGAGAATATGCTTTTAAAAGAACAAAACATCATGGTCATGATTTTTAATTAGTTGTCTAAAGTTCTTACTGTTTGTGTAGCTTTTTTGATTTTTTTATATACTATGATTTTAAAAAGTGTACATAAAATCTTTGGAAATTGTTTCTTTTATTTAATTTAACTTATATGTATTATTATGTCATCTTTAATTTACTTGTTATAACCGATAATTTATATTATTTTAAAAAAAAATTGTAGCTGTAGATATCATCTGACTAAATAGATGTCTGAAAAAGTCCACTAGTGAAATTTTTTGTATTATATCTATCTAAATATACAAATATTTCTACCATAAATACCGTTTCACTCTATAGTTTGAAAAAATTAAGTACATATTATCTCACTAATAATGACTTTGCATCATATATCAAGTTGGATACATGTATTAAAGATACTAGGTATATACTGAAACACAGATAAATAGGAGAAAAAGCGAGCGACAGAATCATTGTATCCTAGATATATATATCTTTGATACTATACATTCTAAAATGAAGATCCACAGAGAGCAAGAAGCGAGCGAGAGGGTTTAGAGAAGAGAGAGCGGGAGAGTTATTGTATCCTAGATACGTAAGAATCACGTTTGGATACAAGGAACAAACTACACTTAATTTGAAATACATGTATGTGGCAAAGTAAATATGGTATAGAACATAATTTTGAAAAACTAAATTGAAGGCGCGATATTATTAAGCCCTAAACTAGTGTGATTTGTATTATTTTCTCTAACTTAAAAACTCTTTTTGGGTTAGGTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGGGTTAGTTTTCTTAATCTTTTTTATCCTCCAAATTACTTACATATTTTTTCCATTTATTATTAAATTTTCATGAGATTAATTTAATAATTACCAATATTTGCAGATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACAGTATGATTATTCTTTACTTTTCTTTCATTTGTATATAATTTAATAAAATAAATATATTTTACTTTATCAATTATAATGAATTTAATGTGTTTTACTAATGAAAGAAAAATTATATTATATTTTAATAAATATTTTGTTATTTTATTTTTCAGATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAGGTATTTTCACTTTATTTTTAAAGCTCAAACTCGATACTTCTTATACGGATAGAAATAAGTTTGCCTGGCCCGATCACAACTTTGGTGGTACTTGAAATTTTATTAATTATTAGTCATTGATTCTCCTTAGAGGTTACAATTGCCGCGAGCAAATATATTAATAACGAGGAAGACTTTTTTGTTATGCTACTAATACTAGCTCTGTGTTCAAATTCTCTTTCTTGGTTTGAAGTCCAGTCGTTTAATTGAAATATGATCAATTGACCTGAACCCTACTTCTTTTTCACTGCTCCTGAAGCTGCTAACCTATCCCCTTCAATTGAACGAAAAAATTCTTTCATCGTGCTCTACTTCATAAGGGGGATGAGAAGGGTGGTCAATCCTCTCTCATATGTGTGTGTGAATATATAAATAATAGACTTCGAACTTAATTAGTAAATTAAATGTGTTTTGTATATATAATCATGATTTGAATTTATAAAATTTAAATTTTAGATTCATCTGTCAGTGTCATAGGTTGAGGCATAGGAGGGTTCATATAATCTCCATGCCCAAAAATTATACGAAATCTCCTCGACACAATTAAGAGTTCTTATATGTTCACTTCTTTATATTTTTGGTATACAATCGACAAATCAAATTTTAATTAAAAAACTTCATATTTTAAATTTCTTTTAATTAAAATTCTAACTCTGCTACGATACTCTATGATGTTAATAACAATGTGGGACATATCTATGATGTTAATATCAATCTCTAATTATTATTTTATTGGTTTTTAATGTTGATCAGCTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTG</genome_strand>
        <mrna_strand>TTCAGATATCCTCT.........................................................................................................TTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGG.......................................................................................................ATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACA........................................................................................................................................................ATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288632" ref_strand="+" ref_description="SGN-E288632 [cLES-8-M12]">
      <seq>tcagatattctctatttttggaatagcaatggctgatgttggtgggattacaatttgggtgatcaatatatgtgtagttcttcagctcaatctattttctactgcatatggtgatgctttgggagtcaaatttggttacacaggcccagtaggcccaaatggtcggggaaggttaagcccaacatattcagcctgctcaaaaggcaaatcacaggccccaattaacataattagccataattgtgttgataacaagaatttaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="69235" stop="71622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69416" g_stop="69428" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69429" i_stop="69533" i_length="105">
            <donor d_prob="0.736" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69534" g_stop="69630" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="110" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69631" i_stop="71166" i_length="1536">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71167" g_stop="71322" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="266" r_length="156" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E288632" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69416" e_stop="69428"/>
          <exon e_start="69534" e_stop="69630"/>
          <exon e_start="71167" e_stop="71322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATATCCTCTGTAAGTCATCAATAATACAAATTGTTTTTCAAATTTTTTGTTTCATTTAAATATTTGATTTTTGGTTTTTGCAAGAAAATTGATACATTGGATTTTATTTTTTAGTTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTGGTAAGTCCACATATCTTTCTTTCGTATTACGGCTTTATCTGAACTCAATATTTTTTTACGTTGTAAAGCTAGTATGTCCAACAATATCGAAATATTCTACGGATATGAGTTATAGTGGGATGGTTGAGAACTGTAATCTTTTATCCTTCCTGAAAGGTCTTGGGCTCAAGTTTTTTAATGTGTGAGAATTCAGATTAGTTTTTGAATGGGCCCTACAATGTGTGAATTCAGATTAGTCGAACTCTAATATAGATATTGAATATCGAATGACAAAACAATGTGTTTTACCTTATTTTGAATATGGAAATCAATTAAGTGGCTTTGGGACCATGTATAGCAAATGTGATAGATGAAATTCCTTCACCCTTTGGACCGATGTGCAGTTTAGTTTACGGATTCAACAAAGCGCATAAAGTTTGGTTAAACTTTGTATTTGTCTTGAAAAAACCTAACATGTTTTAGAACCCTATAACTTAGTATGGTTAAAATATTAAACCCTGAATTTCCGATTGCCCATTCTTAAATAGATGTCTCGAATGAATTTGAATCATGTAAATTGAAAACCTATGATAAGAAGTACCTCCTCCCTTAATTGTTCCTACGTAATACAAATCAAAATTAATCTAGCTAATAGATTTAAAATATTAAATAATTAATAACTTTTTTTAAAAAAAGTATACGCAATAAAACCATCCTAGTTTGAAGCTTTGCTTTAATTGTTGAAAAATCTTTGACGTATTTGTAATGAGAATATGCTTTTAAAAGAACAAAACATCATGGTCATGATTTTTAATTAGTTGTCTAAAGTTCTTACTGTTTGTGTAGCTTTTTTGATTTTTTTATATACTATGATTTTAAAAAGTGTACATAAAATCTTTGGAAATTGTTTCTTTTATTTAATTTAACTTATATGTATTATTATGTCATCTTTAATTTACTTGTTATAACCGATAATTTATATTATTTTAAAAAAAAATTGTAGCTGTAGATATCATCTGACTAAATAGATGTCTGAAAAAGTCCACTAGTGAAATTTTTTGTATTATATCTATCTAAATATACAAATATTTCTACCATAAATACCGTTTCACTCTATAGTTTGAAAAAATTAAGTACATATTATCTCACTAATAATGACTTTGCATCATATATCAAGTTGGATACATGTATTAAAGATACTAGGTATATACTGAAACACAGATAAATAGGAGAAAAAGCGAGCGACAGAATCATTGTATCCTAGATATATATATCTTTGATACTATACATTCTAAAATGAAGATCCACAGAGAGCAAGAAGCGAGCGAGAGGGTTTAGAGAAGAGAGAGCGGGAGAGTTATTGTATCCTAGATACGTAAGAATCACGTTTGGATACAAGGAACAAACTACACTTAATTTGAAATACATGTATGTGGCAAAGTAAATATGGTATAGAACATAATTTTGAAAAACTAAATTGAAGGCGCGATATTATTAAGCCCTAAACTAGTGTGATTTGTATTATTTTCTCTAACTTAAAAACTCTTTTTGGGTTAGGTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGC</genome_strand>
        <mrna_strand>TCAGATATTCTCT.........................................................................................................ATTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTACAATTTGGGTGATCAATATATGTGTAGTTCTTCAGCTCAATCTATTTTCTACTGCATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTCGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAAAGGCAAATCACAGGCCCCAATTAACATAATTAGCCATAATTGTGTTGATAACAAGAATTTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540004" ref_strand="+" ref_description="SGN-E540004 [TUS-60-A23](-)">
      <seq>tccccaattaacataattagccataattgtgttgttaacaagaatttaaagcctttaattatgcaatataatcattctgaagttgctactttggttgataatggctttaatgttgggataaaatatggtgataatgcaggaagtttaattgtggatggtaaaacttacaattttaagcaaatgcattggcattccccttctgaacatacaattgatggcaaacaatatgcagcagagcttcatctagttcattttgctcaagataatactatagcagttttatcaattctcttccatttgggccatcctgatcctctaatgaccaagcttcaaaacaaactgaatgagctagcaagggatgtagcaacacataaagaaacacaagtgcagcttggagtaattgatacacatgaaataaggaaacattctcacaaatattactcatacactggttctttaacaactccaccatgcactgaaattgtctcttggtacattcttggcaaggtgagatcaatatcaagagaacaagtagaagaattgagagctccattggatccaacatgcaagagaaatgcaagaccaactcaacccttaaatggaagacaaatccaaatgtatgaagcccaacccaccccttaattatcaaatggaagacaaataaatatgttatatgtgtacaaaaattcccctaataaaagactcctacgaaagaaagaaaaaaaaaaaacaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="70971" stop="74251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71271" g_stop="71387" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71388" i_stop="71490" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71491" g_stop="71597" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="224" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71598" i_stop="71749" i_length="152">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71750" g_stop="71852" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="327" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71853" i_stop="72644" i_length="792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72645" g_stop="72824" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="507" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72825" i_stop="73730" i_length="906">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73731" g_stop="73948" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="725" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="745"/>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E540004" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71271" e_stop="71387"/>
          <exon e_start="71491" e_stop="71597"/>
          <exon e_start="71750" e_stop="71852"/>
          <exon e_start="72645" e_stop="72824"/>
          <exon e_start="73731" e_stop="73948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGGGTTAGTTTTCTTAATCTTTTTTATCCTCCAAATTACTTACATATTTTTTCCATTTATTATTAAATTTTCATGAGATTAATTTAATAATTACCAATATTTGCAGATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACAGTATGATTATTCTTTACTTTTCTTTCATTTGTATATAATTTAATAAAATAAATATATTTTACTTTATCAATTATAATGAATTTAATGTGTTTTACTAATGAAAGAAAAATTATATTATATTTTAATAAATATTTTGTTATTTTATTTTTCAGATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAGGTATTTTCACTTTATTTTTAAAGCTCAAACTCGATACTTCTTATACGGATAGAAATAAGTTTGCCTGGCCCGATCACAACTTTGGTGGTACTTGAAATTTTATTAATTATTAGTCATTGATTCTCCTTAGAGGTTACAATTGCCGCGAGCAAATATATTAATAACGAGGAAGACTTTTTTGTTATGCTACTAATACTAGCTCTGTGTTCAAATTCTCTTTCTTGGTTTGAAGTCCAGTCGTTTAATTGAAATATGATCAATTGACCTGAACCCTACTTCTTTTTCACTGCTCCTGAAGCTGCTAACCTATCCCCTTCAATTGAACGAAAAAATTCTTTCATCGTGCTCTACTTCATAAGGGGGATGAGAAGGGTGGTCAATCCTCTCTCATATGTGTGTGTGAATATATAAATAATAGACTTCGAACTTAATTAGTAAATTAAATGTGTTTTGTATATATAATCATGATTTGAATTTATAAAATTTAAATTTTAGATTCATCTGTCAGTGTCATAGGTTGAGGCATAGGAGGGTTCATATAATCTCCATGCCCAAAAATTATACGAAATCTCCTCGACACAATTAAGAGTTCTTATATGTTCACTTCTTTATATTTTTGGTATACAATCGACAAATCAAATTTTAATTAAAAAACTTCATATTTTAAATTTCTTTTAATTAAAATTCTAACTCTGCTACGATACTCTATGATGTTAATAACAATGTGGGACATATCTATGATGTTAATATCAATCTCTAATTATTATTTTATTGGTTTTTAATGTTGATCAGCTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTGGCAAGGTATGCAAATCTTTCTCCTTTATTTTCTTCTTGTATTTTGAGTTTAATTTGTTGGTTTATAGGAATGTTACACGCACGTATCTCGATTAATTCTACGTGTACCTAATAATGTCTCTAATCGGCACGTGCACCAGGTAACTCTACTATTTTGCCTAGCTAAGAAATTTGAACATGAGACTTCATAGTTCTCAACTCACTTCAATAATCACTAAACAACACGTCAACACCATTAAGGATGGCAATGGGGTGGAGCGGATGCGGGATGGGTCGGGTTTAAGGCTGTGCAAGACGGGTTGGAATGGGTTTTTTCAAATTAAGGATGGGGGAGGGGTTGGATTGCGGTATATGTGATTTCATGTGGGTTTAAACTTAATTTCAATCTTTGACATGTTACAAGAGTGATATAACATTATTTATTAAGATAATTTCTTTAAAGCTACTAAATATTCATGATAGTAAATGAAAATGGTTCAATAAAAATAATTCAATCTTTTTCACATGCTTCCCAATTGACCTCTAAAAAATAAAAATTTAAGTCATTATCCTAATACAACTTAATGAAAAAATGATTTTTTTTTTTTATAAAACTTAACTAGAAAAAAAATACTAAAAAAATTATGCGGAGCGGGTCTATGTAGGAAGGGGTGGGAAAGGTTGAAATTGAAAAAAAAAATGTTATGCGAGACAGGGCGAATAAAAATTTTGTGAATTAAGTTCAACCTACCTCATCCCACACTGCTTCATTTCCATCCCTAAACACCATTAGGTGCTAATGTCATAACTAGTACTCCCTCCGTTTCAATTTACGCATGTCGTTGTCTGATTGGGCACGGAAGTATTATGAAATTTCATAGATAATTGAATAATGAATAATTATTTTTTTTAAAAAAATTGTGAATATTATAGGTGAGATCAATATCAAGAGAACAAGTAGAAGAATTGAGAGCTCCATTGGATCCAACATGCAAGAGAAATGCAAGACCAACTCAACCCTTAAATGGAAGACAAATCCAAATGTATGAAGCCCAACCCACCCCTTAATTATCAAATGGAAGACAAATAAATATGTTATATGTGTACAAAAATTCCCCTAATAAAAGACTCCTACGAAAGAAAGAAAAAAA</genome_strand>
        <mrna_strand>TCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCTTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGG.......................................................................................................ATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACA........................................................................................................................................................ATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCAATATCAAGAGAACAAGTAGAAGAATTGAGAGCTCCATTGGATCCAACATGCAAGAGAAATGCAAGACCAACTCAACCCTTAAATGGAAGACAAATCCAAATGTATGAAGCCCAACCCACCCCTTAATTATCAAATGGAAGACAAATAAATATGTTATATGTGTACAAAAATTCCCCTAATAAAAGACTCCTACGAAAGAAAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397694" ref_strand="+" ref_description="SGN-E397694 [TUS-46-D9](-)">
      <seq>tgaacccggttgggtttggaggaatgaaacggttttcctccggccggcgattggaatcatggggaggggatgaaatcaacgcagttgtttaagtgggtcccaatgaaagtggaaaaaacaaaaagcaaagcacaaaaagttttgatggtagttggaattttggcaggaaaatttaacggcctttgttcacatattcggttaaaatttcgaggtaaaaaaaaaatgatacgtactttttttggagtttattttttttttataaaaatgttttttttttaacttttcaataatataatgataacgaataggtttttatatatatatatatatattgtaaatatattttggtttttggagtgaaggtttgtaaatttttactattttttattagtagtttagaatattataatgaaaattatttggaaataatgtttttttgtcttttattatttagtgttttgtatttttttggagaatcccgagatttcaggtatataaaatgtaatagaaattgaattaatagatttacatagatttactgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="77185" stop="36749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76885" g_stop="76321" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E397694" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76885" e_stop="76321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAA-CCGGTTGGGTTAGGAGGAATGAAACGGTTCTCCTCCGGCCGGCGATCGGAATCATGGGGAGGCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAGCAAAGCACAAAAAGTCTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTCTTTTGGAGTTTATTTTTCTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTCTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATCTAGTGTCTTGTATTTTTTTTGGAGAATCACGAGATTTCAGGTATATAAAATGTAATATAAATTGAATTAATAGATTTACATAGATTTACTGATTCGGCAGTACAGAGTTTAAGAA</genome_strand>
        <mrna_strand>TGAACCCGGTTGGGTTTGGAGGAATGAAACGGTTTTCCTCCGGCCGGCGATTGGAATCATGGGGAGGGGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAGCAAAGCACAAAAAGTTTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTTTTTTGGAGTTTATTTTTTTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTTTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATTTAGTGTTTTGTA-TTTTTTTGGAGAATCCCGAGATTTCAGGTATATAAAATGTAATAGAAATTGAATTAATAGATTTACATAGATTTACTGAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397692" ref_strand="+" ref_description="SGN-E397692 [TUS-46-D7](-)">
      <seq>gcgatgaaattaacccagttgtttaagtgggtcccaatgaaaggggaaaaaacaaaaagcaaagcacaaaaagtcttgatggtagttggaattttggcaggaaaatttaacggcctttgttcacatattcggttaaaatttcgaggtaaaaaaaaaatgatacgtactttttttggagtttattttttttttataaaaatgttttttttttaacttttcaataatataatgataacgaataggtttttatatatatatatatatattgtaaatatattttggtttttggagtgaaggtttgtaaatttttactattttttattagtagtttagaatattataatgaaaattatttggaaataatgtttttttgtcttttattatttagtgtcttgtatttttttggagaatcccgagatttcaggtatataaaatgtaatataaattgaattaatagatttacatagatttactgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="77120" stop="36749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76820" g_stop="76321" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E397692" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76820" e_stop="76321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAGCAAAGCACAAAAAGTCTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTCTTTTGGAGTTTATTTTTCTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTCTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATCTAGTGTCTTGTATTTTTTTTGGAGAATCACGAGATTTCAGGTATATAAAATGTAATATAAATTGAATTAATAGATTTACATAGATTTACTGATTCGGCAGTACAGAGTTTAAGAA</genome_strand>
        <mrna_strand>GCGATGAAATTAACCCAGTTGTTTAAGTGGGTCCCAATGAAAGGGGAAAAAACAAAAAGCAAAGCACAAAAAGTCTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTTTTTTGGAGTTTATTTTTTTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTTTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATTTAGTGTCTTGTA-TTTTTTTGGAGAATCCCGAGATTTCAGGTATATAAAATGTAATATAAATTGAATTAATAGATTTACATAGATTTACTGAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267827" ref_strand="+" ref_description="SGN-E267827 [cLEI-12-K5]">
      <seq>ccaaataattttcattataatattctaaactactaatagaaaatagtgaaaatttacaaaccttcactccaaaaaccaaaatatatttacaatatatatatatatatataaaaacctattcgttatcattatattattgaaaagttaaaaaaaaaacatttttataaaagaaaaataaactccaaaagaagtacgtatcattttttttttacctcgaaattttaaccgaatatgtgaacaaaggccgttaaattttcctgccaaaattccaactaccatcaagactttttgtgctttgctttttgttttttccactttcattgggacccacttaaacaactgcgttgatttcatcgcctccccatgattccgatcgccggccggaggagaaccgtttcattcctcctaacccaaccggttcaacgctaaccggagctcctccgcgagttttccctacggtcacacttttgctctttctcagcggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="76164" stop="77252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76464" g_stop="76952" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E267827" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76464" e_stop="76952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATAATTTTCATTATAATATTCTAAACTACTAATAGAAAATAGTAAAAATTTACAAACCTTCACTCCAAAAACCAAAATATATTTACAATATATATATATATATATAAAAACCTATTCGTTATCATTATATTATTGAAAAGTTAAAAAAAAAACATTTTTATAAAAGAAAAATAAACTCCAAAAGAAGTACGTATCATTTTTTTTTTACCTCGAAATTTTAACCGAATATGTGAACAAAGGCCGTTAAATTTTCCTGCCAAAATTCCAACTACCATCAAGACTTTTTGTGCTTTGCTTTTTGTTTTTTCCACTTTCATTGGGACCCACTTAAACAACTGCGTTGATTTCATCGCCTCCCCATGATTCCGATCGCCGGCCGGAGGAGAACCGTTTCATTCCTCCTAACCCAACCGGTTCAACGCTAACCGGAGCTCCTCCGCGAGTTTTCCCTACGGTCACACTTTTGCTCTTTCTCAGCGGATTTA</genome_strand>
        <mrna_strand>CCAAATAATTTTCATTATAATATTCTAAACTACTAATAGAAAATAGTGAAAATTTACAAACCTTCACTCCAAAAACCAAAATATATTTACAATATATATATATATATATAAAAACCTATTCGTTATCATTATATTATTGAAAAGTTAAAAAAAAAACATTTTTATAAAAGAAAAATAAACTCCAAAAGAAGTACGTATCATTTTTTTTTTACCTCGAAATTTTAACCGAATATGTGAACAAAGGCCGTTAAATTTTCCTGCCAAAATTCCAACTACCATCAAGACTTTTTGTGCTTTGCTTTTTGTTTTTTCCACTTTCATTGGGACCCACTTAAACAACTGCGTTGATTTCATCGCCTCCCCATGATTCCGATCGCCGGCCGGAGGAGAACCGTTTCATTCCTCCTAACCCAACCGGTTCAACGCTAACCGGAGCTCCTCCGCGAGTTTTCCCTACGGTCACACTTTTGCTCTTTCTCAGCGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275995" ref_strand="+" ref_description="SGN-E275995 [cLEN-12-L20]">
      <seq>gattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattcactcgagagatcacgaagcaacaatggagagaaacgcaaatccggattctgttcacgattactatcaatattccgatctaatcggagtaacaaaaaaccgtcaaggtccagtactgataaaacgctaggttcaaagtcgacgacggagccgataaatccgctgagaaagagcaaaagtgtgaccgtagggaaaactcgcggaggagctccggttagcgttgaaccggttgggttaggaggaatgaaacggttctcctccggccggcgatcggaatcatggggaggcgatgaaatcaacgcagttgtttaagtgggtcccaatgaaagtggaaaaaacaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="77669" stop="76462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77369" g_stop="76762" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E275995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77369" e_stop="76762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGTAACAAAAAACCGTCAAGGTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGACGACGGAGCCGATAAATCCGCTGAGAAAGAGCAAAAGTGTGACCGTAGGGAAAACTCGCGGAGGAGCTCCGGTTAGCGTTGAACCGGTTGGGTTAGGAGGAATGAAACGGTTCTCCTCCGGCCGGCGATCGGAATCATGGGGAGGCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAG</genome_strand>
        <mrna_strand>GATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGTAACAAAAAACCGTCAAGGTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGACGACGGAGCCGATAAATCCGCTGAGAAAGAGCAAAAGTGTGACCGTAGGGAAAACTCGCGGAGGAGCTCCGGTTAGCGTTGAACCGGTTGGGTTAGGAGGAATGAAACGGTTCTCCTCCGGCCGGCGATCGGAATCATGGGGAGGCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363112" ref_strand="+" ref_description="SGN-E363112 [cLPP-19-O7]">
      <seq>atgagtccgatcgccggccggaggagaaccgtttcattcctcctaaaccaaccggttcaacgctaaccggagctcctccgcgagttttccctacgctcacacttttgctctttctcagcggatttatcggctccgtcgacgactttgaacctagcgttttatcagtactggacctagccggttttttgttgctccgattagatcggaatattgatagtaatcgtgaacagaatccggatttgcgtttctctccattgttgcttcgtgatctctcgggtgaattgttttcacatttttttgatttctccgatgatcgtcggcttcgtgatctacgtttcgatcttactcttcccatacaagataccttcggtgacgacggttccgtaaccgaagccgatttcaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="76527" stop="77532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76827" g_stop="77232" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E363112" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76827" e_stop="77232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCCGATCGCCGGCCGGAGGAGAACCGTTTCATTCCTCCTAACCCAACCGGTTCAACGCTAACCGGAGCTCCTCCGCGAGTTTTCCCTACGGTCACACTTTTGCTCTTTCTCAGCGGATTTATCGGCTCCGTCGTCGACTTTGAACCTAGCGTTTTATCAGTACTGGACCTTGACGGTTTTTTGTTACTCCGATTAGATCGGAATATTGATAGTAATCGTGAACAGAATCCGGATTTGCGTTTCTCTCCATTGTTGCTTCGTGATCTCTCGAGTGAATTTTTTTCACATTTTTTTGATTTCTCCGATGATCGTCGGCTTCGTGATCTACGTTTCGATCTTACTCTTCCCATACAAGATACCTTCGGTGACGACGGTTCCGTAACCGAAGCCGATTTCAACGT</genome_strand>
        <mrna_strand>ATGAGTCCGATCGCCGGCCGGAGGAGAACCGTTTCATTCCTCCTAAACCAACCGGTTCAACGCTAACCGGAGCTCCTCCGCGAGTTTTCCCTACGCTCACACTTTTGCTCTTTCTCAGCGGATTTATCGGCTCCGTCGACGACTTTGAACCTAGCGTTTTATCAGTACTGGACCTAGCCGGTTTTTTGTTGCTCCGATTAGATCGGAATATTGATAGTAATCGTGAACAGAATCCGGATTTGCGTTTCTCTCCATTGTTGCTTCGTGATCTCTCGGGTGAATTGTTTTCACATTTTTTTGATTTCTCCGATGATCGTCGGCTTCGTGATCTACGTTTCGATCTTACTCTTCCCATACAAGATACCTTCGGTGACGACGGTTCCGTAACCGAAGCCGATTTCAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461156" ref_strand="+" ref_description="SGN-E461156 [cPRO-34-O18]">
      <seq>catttatattttctctctctatatatttcttctttctctctctctctctagaatgcctcaagttgatttggaaactctagtttcggcctgtgccggcggcggaagtgaccggaaagttgcatgtgagactttggctgacagcgacgacggcgaaaaacgtgtgaaagacgatgagaagcaatcggaacatccgcctgattttccgccggaatcgttctggctttcgaaagatgctgagttcgattggttcgatcggaacgcctttttggaccgtaaacagtctacgaaaggtatcggtccaggttcaaattcgagttcgcagagattttcgtcgactttgaaaagtaaggcttcgattattggatttccgaagactagttacgtcgattcgaaacggagaacatgtaaaccggcgaacattaggctttttccggcgaaaaggtctgaatccacgttgaaatcggcttcgggtacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattcactcgagagatcacgaagcaacaatggagagaaacgcaaatccggattctgttcacgattactatcaatattccgatcntatcggagtaacaaaagccggcaagttccagtactgataaaacgctaggttcaaagtcgacgacggagccgataaaccgctgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="78012" stop="76637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77712" g_stop="76937" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E461156" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77712" e_stop="76937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATATTTTTTCTCTCTCTA-AGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGTAACAAAAAACCGTCAAGGTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGACGACGGAGCCGATAAATCCGCTGAGAAA</genome_strand>
        <mrna_strand>CATTTATATTTTCTCTCTCTATATATTTCTTCTTTCTCTCTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCCTGTGCCGGCGGCGGAAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACA--G-CGACGACGGCGAAAAACGTGTGAAAGAC---------GAT---GAGAAGCAATCGGAACATCCGCCTGATTTTCCGCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTCGATCGGAACGCCTTTTTGGACCGTAAACAGTCTACGAAAGGTATCGG------TCCAGGTTCAAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATTGGATTT-------C-C-GAAGACTAGTTACGTCGATTCGAAACGGAGAACATGTAAACCGGCGAACATTAGGCTTTTTCCGGCGAAAAGGTCTGAATCCACGTTGAAATCGGCTTCGGGTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCNTATCGGAGTAAC-AAAAGCCGGCAAGTTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGACGACGGAGCCGATAAA-CCGCTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436593" ref_strand="+" ref_description="SGN-E436593 [STM-63-A6]">
      <seq>catttatattttctctctctatatatttcttctttctctctctctctctagaatgcctcaagttgatttggaaactctagtttcggcctgtgccggcggcggaagtgaccggaaagttgcatgtgagactttggctgacagcgacgacggcgaaaaacgtgtgaaagacgatgagaagcaatcggaacatccgcctgattttccgccggaatcgttctggctttcgaaagatgctgagttcgattggttcgatcggaacgcctttttggaccgtaaacagtctacgaaaggtatcggtccaggttcaaattcgagttcgcagagattttcgtcgactttgaaaagtaaggcttcgattattggatttccgaagactagttacgtcgattcgaaacggagaacatgtaaaccggcgaacattaagctttttccggcgaaaaggtctgaatccacgttgaaatcggcttcgggtacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaatgtgaaaaaattcactcgagagatcacgaaagcacaatggagagaaacgcaaatccggattctgttcacgattactatcaatattccgatcntatcggagtaacaaaaagccggcaagttccagtactgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="78012" stop="76684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77712" g_stop="76984" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E436593" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.044" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77712" e_stop="76984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATATTTTTTCTCTCTCTA-AGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGTAACAAAAAACCGTCAAGGTCCAGTACTGATAAA</genome_strand>
        <mrna_strand>CATTTATATTTTCTCTCTCTATATATTTCTTCTTTCTCTCTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCCTGTGCCGGCGGCGGAAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACA--G-CGACGACGGCGAAAAACGTGTGAAAGAC---------GAT---GAGAAGCAATCGGAACATCCGCCTGATTTTCCGCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTCGATCGGAACGCCTTTTTGGACCGTAAACAGTCTACGAAAGGTATCGG------TCCAGGTTCAAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATTGGATTT-------C-C-GAAGACTAGTTACGTCGATTCGAAACGGAGAACATGTAAACCGGCGAACATTAAGCTTTTTCCGGCGAAAAGGTCTGAATCCACGTTGAAATCGGCTTCGGGTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATC-AAAAAATGTG-AAAAAATTCACTCGAGAGATCACGAAAGCACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCNTATCGGAGTAACAAAAAGCCGGCAAGTTCCAGTACTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310148" ref_strand="+" ref_description="SGN-E310148 [cLEZ-8-K21]">
      <seq>atcggaatgcctttttggaccggaaacagtctacgaaaggtatcggtcataatccaggttcgaattcgagttcgcagagattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattcactcgagagatcacgaagcaacaatggagagaaacgcaaatccggattctgttcacgattactatcaatattccgatctaatcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="77747" stop="76718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77447" g_stop="77018" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E310148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77447" e_stop="77018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAG</genome_strand>
        <mrna_strand>ATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397693" ref_strand="+" ref_description="SGN-E397693 [TUS-46-D7]">
      <seq>agattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattcactcgagagatcacgaagcaacaatggatattttctcaaatccggattctgttcacgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="77670" stop="76744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77370" g_stop="77044" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E397693" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77370" e_stop="77044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTA</genome_strand>
        <mrna_strand>AGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGATATTTTCTCAAATCCGGATTCTGTTCACGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287530" ref_strand="+" ref_description="SGN-E287530 [cLES-9-F1]">
      <seq>gacggcgaaaaacgtgtgaaagacgatttggatgatgaggagaagcaatcggagcatccgcctgatttccccccggaatcgttctggctttcgaaagatgctgagttcgattggtttgatcggaatgcctttttggaccggaaacagtctacgaaaggtatcggtcataatccaggttcgaattcgagttcgcagagattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattcactcgagagatcacgaagcaacaatggagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="77865" stop="76771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77565" g_stop="77071" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E287530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77565" e_stop="77071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAA</genome_strand>
        <mrna_strand>GACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397695" ref_strand="+" ref_description="SGN-E397695 [TUS-46-D9]">
      <seq>agattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattccctctagagatcacgaagcaacaatggatttttttttcaaatatggattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="77670" stop="76777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77370" g_stop="77077" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E397695" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77370" e_stop="77077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGA</genome_strand>
        <mrna_strand>AGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCCCTCTAGAGATCACGAAGCAACAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336040" ref_strand="+" ref_description="SGN-E336040 [cTOE-12-A17]">
      <seq>ttttctctctctaagattttcttcttctttctctctctagaatgcctcaagttgatttggaaactctagtttcggcatgtgccggcggcgggagtgaccggaaagttgcatgtgagactttggctgacagtgacggcgacggcgaaaaacgtgtgaaagacgatttggatgatgaggagaagcaatcggagcatccgcctgatttccccccggaatcgttctggctttcgaaagatgctgagttcgattggtttgatcggaatgcctttttggaccggaaacagtctacgaaaggtatcggtcataatccaggttcgaattcgagttcgcagagattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaaatcaaaaaaatgtgaaaaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="78002" stop="76805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77702" g_stop="77105" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E336040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77702" e_stop="77105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTC</genome_strand>
        <mrna_strand>TTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201777" ref_strand="+" ref_description="SGN-E201777 [cLEC-11-D9]">
      <seq>acatttatattttttctctctctaagattttcttcttctttctctctctagaatgcctcaagttgatttggaaactctagtttcggcatgtgccggcggcgggagtgaccggaaagttgcatgtgagactttggctgacagtgacggcgacggcgaaaaacgtgtgaaagacgatttggatgatgaggagaagcaatcggagcatccgcctgatttccccccggaatcgttctggctttcgaaagatgctgagttcgattggtttgatcggaatgcctttttggaccggaaacagtctacgaaaggtatcggtcataatccaggttcgaattcgagttcgcagagattttcgtcgactttgaaaagtaaggcttcgattatcggatttccgaagactcagaagactagtttcatcgattcgaaacggcgaacttgtaaaccggcgaacattaggcttttcccggcgaaaaggtctgaatctacgttgaaatcggcttcggttacggaaccgtcgtcaccgaaggtatcttgtatgggaagagtaagatcgaaacgtagatcacgaagccgacgatcatcggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="-" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="78013" stop="76829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77713" g_stop="77129" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="-" ref_id="SGN-E201777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77713" e_stop="77129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTATATTTTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAA</genome_strand>
        <mrna_strand>ACATTTATATTTTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279819" ref_strand="+" ref_description="SGN-E279819 [cLER-8-B3]">
      <seq>ctctctagaaacaacagagttttgtttgttaagtcaatggcgcaatcttcagacagttccaatggttccacttctgtgagcactcaagcggaacctaattcttcattttcgccgccgccgaacttcaaaccgccgaaacctaagccatttacaccgagaggtgataagattttggacatattgggtgcttctcttgctttggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0004D19-8gOjI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0004D19.3" temp_strand="+" temp_description="C09SLe0004D19.3  EF576815.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576815| upload_account_name:spain (1 - 92010)">
        <position start="83726" stop="84532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84026" g_stop="84232" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0004D19.3" gen_strand="+" ref_id="SGN-E279819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0004D19.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84026" e_stop="84232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAGAAACAACAGAGTTTTGTTTGTTAAGTCAATGGCGCAATCTTCAGACAGTTCCAATGGTTCCACTTCTGTGAGCACTCAAGCGGAACCTAATTCTTCATTTTCGCCGCCGCCGAACTTCAAACCGCCGAAACCTAAGCCATTTACACCGAGAGGTGATAAGATTTTGGACATATTGGGTGCTTCTCTTGCTTTGGTTTTT</genome_strand>
        <mrna_strand>CTCTCTAGAAACAACAGAGTTTTGTTTGTTAAGTCAATGGCGCAATCTTCAGACAGTTCCAATGGTTCCACTTCTGTGAGCACTCAAGCGGAACCTAATTCTTCATTTTCGCCGCCGCCGAACTTCAAACCGCCGAAACCTAAGCCATTTACACCGAGAGGTGATAAGATTTTGGACATATTGGGTGCTTCTCTTGCTTTGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>135</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1350" PGL_stop="85"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1350" e_stop="1314"/>
            <exon e_start="1240" e_stop="1139"/>
            <exon e_start="996" e_stop="844"/>
            <exon e_start="642" e_stop="565"/>
            <exon e_start="392" e_stop="338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1350" e_stop="1314" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.920">
            <gDNA_intron_boundary i_start="1313" i_stop="1241" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1240" e_stop="1139" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1138" i_stop="997" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="996" e_stop="844" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.771" acc_prob="0.997">
            <gDNA_intron_boundary i_start="843" i_stop="643" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="642" e_stop="565" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.977">
            <gDNA_intron_boundary i_start="564" i_stop="393" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="392" e_stop="338" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1350" stop="1314"/>
              <exon start="1240" stop="1139"/>
              <exon start="996" stop="844"/>
              <exon start="642" stop="565"/>
              <exon start="392" stop="338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="951" stop="844"/>
              <exon start="642" stop="565"/>
              <exon start="392" stop="380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT : GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG : ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG : GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG : GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCC</gDNA_template>
            <first_frame> Y  E  G  H  Q  E  G  S  F  R  S  *   : C  *  S  P  S  C  Q  K  V  C  S  V  C  *  *  R  S  R  W  H  W  F  D  S  R  C  K  T  R  S  A  T  S  *   : D  C  T  *  R  A  C  E  T  D  G  W  R  G  F  *  T  G  F  C  *  I  *  A  H  R  N  T  I  G  R  S  T  R  C  W  E  D  N  C  *  C  K  V  S  F  I  S  K  E  A   : G  *  E  L  H  A  D  C  W  R  R  V  Q  T  C  C  Y  *  P  T  C  Y  F  G  *  T   : G  *  C  T  C  L  C  S  R  N  R  C  K  T  C  R  N  S   </first_frame>
            <second_frame>  M  R  D  I  R  R  A  L  L  E  A  D  :  V  S  L  P  V  V  R  R  F  V  Q  S  V  S  E  E  A  V  G  T  G  L  I  R  G  V  K  P  D  Q  Q  L  V  K  :  T  V  R  D  E  L  V  K  L  M  G  G  E  V  S  E  L  V  F  A  K  S  K  P  T  V  I  L  L  A  G  L  Q  G  V  G  K  T  T  V  S  A  K  L  A  L  Y  L  K  K  Q  :  G  K  S  C  M  L  I  A  G  D  V  Y  R  P  A  A  I  D  Q  L  V  I  L  G  K  Q  :  V  D  V  P  V  Y  A  A  G  T  D  V  K  P  A  E  I  A  </second_frame>
            <third_frame>   *  G  T  S  G  G  L  F  *  K  L  M :   L  V  S  Q  L  S  E  G  L  F  S  L  L  V  K  K  P  L  A  L  V  *  F  E  V  *  N  Q  I  S  N  *  L  R :   L  Y  V  T  S  L  *  N  *  W  V  E  R  F  L  N  W  F  L  L  N  L  S  P  P  *  Y  Y  W  P  V  Y  K  V  L  G  R  Q  L  L  V  Q  S  *  L  Y  I  *  R  S  R :   V  R  V  A  C  *  L  L  E  T  C  T  D  L  L  L  L  T  N  L  L  F  W  V  N  R :   L  M  Y  L  F  M  Q  Q  E  Q  M  *  N  L  Q  K  *  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1349" stop="1314"/>
                    <exon start="1240" stop="1139"/>
                    <exon start="996" stop="844"/>
                    <exon start="642" stop="565"/>
                    <exon start="392" stop="339"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRDIRRALLEADVSLPVVRRFVQSVSEEAVGTGLIRGVKPDQQLVKTVRDELVKLMGGEVSELVFAKSKPTVILLAGLQGVGKTTVSAKLALYLKKQGKSCMLIAGDVYRPAAIDQLVILGKQVDVPVYAAGTDVKPAEIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="892" e_stop="844"/>
            <exon e_start="642" e_stop="565"/>
            <exon e_start="403" e_stop="267"/>
            <exon e_start="187" e_stop="85"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.771" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.515" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="892" e_stop="844" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.771" acc_prob="0.997">
            <gDNA_intron_boundary i_start="843" i_stop="643" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="642" e_stop="565" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.515">
            <gDNA_intron_boundary i_start="564" i_stop="404" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="403" e_stop="267" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="266" i_stop="188" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="187" e_stop="85" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="892" stop="844"/>
              <exon start="642" stop="565"/>
              <exon start="403" stop="267"/>
              <exon start="187" stop="85"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG : GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG : TGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG</gDNA_template>
            <first_frame> W  E  D  N  C  *  C  K  V  S  F  I  S  K  E  A   : G  *  E  L  H  A  D  C  W  R  R  V  Q  T  C  C  Y  *  P  T  C  Y  F  G  *  T   : V  G  E  Q  V  D  V  P  V  Y  A  A  G  T  D  V  K  P  A  E  I  A  R  Q  G  L  Q  E  A  K  K  K  N  V  D  V  V  I  M  D  T  A  G  R  L  Q  :  I  D  K  T  M  M  D  E  L  K  D  V  K  R  V  L  N  P  T  E  V  L  L  V  V  D  A  M  T  G  Q  E  A  A  </first_frame>
            <second_frame>  G  K  T  T  V  S  A  K  L  A  L  Y  L  K  K  Q  :  G  K  S  C  M  L  I  A  G  D  V  Y  R  P  A  A  I  D  Q  L  V  I  L  G  K  Q  :  W  G  N  R  L  M  Y  L  F  M  Q  Q  E  Q  M  *  N  L  Q  K  *  P  D  K  D  Y  K  R  P  K  R  R  M  *  M  *  S  *  W  I  Q  L  E  D  F  R :   *  I  K  L  *  W  M  N  *  K  T  *  N  G  Y  *  T  P  Q  R  F  Y  L  L  W  M  Q  *  L  A  K  K  L  Q </second_frame>
            <third_frame>   G  R  Q  L  L  V  Q  S  *  L  Y  I  *  R  S  R :   V  R  V  A  C  *  L  L  E  T  C  T  D  L  L  L  L  T  N  L  L  F  W  V  N  S :   G  G  T  G  *  C  T  C  L  C  S  R  N  R  C  K  T  C  R  N  S  P  T  R  I  T  R  G  Q  K  E  E  C  R  C  S  H  N  G  Y  S  W  K  T  S   : D  R  *  N  Y  D  G  *  I  K  R  R  E  T  G  T  E  P  H  R  G  F  T  C  C  G  C  N  D  W  P  R  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="568" stop="565"/>
                    <exon start="403" stop="267"/>
                    <exon start="187" stop="86"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVGEQVDVPVYAAGTDVKPAEIARQGLQEAKKKNVDVVIMDTAGRLQIDKTMMDELKDVKRVLNPTEVLLVVDAMTGQEAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5009" PGL_stop="3289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5009" e_stop="4748"/>
            <exon e_start="3652" e_stop="3289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5009" e_stop="4748" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.989">
            <gDNA_intron_boundary i_start="4747" i_stop="3653" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3652" e_stop="3289" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5009" stop="4748"/>
              <exon start="3652" stop="3377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5007" stop="4748"/>
              <exon start="3652" stop="3341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5005" stop="4748"/>
              <exon start="3652" stop="3289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5005" stop="4748"/>
              <exon start="3652" stop="3292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4997" stop="4748"/>
              <exon start="3652" stop="3326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4996" stop="4748"/>
              <exon start="3652" stop="3391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG : ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAGTTC</gDNA_template>
            <first_frame> V  D  M  D  M  S  N  P  A  V  F  V  N  A  E  F  L  K  E  H  V  G  R  K  V  R  T  V  V  Q  V  M  Q  S  D  G  D  K  V  I  G  K  S  T  D  E  K  E  L  V  V  K  G  N  P  P  N  A  L  S  T  F  V  E  V  I  G  I  A  D  T  I  Q  S  I  E  A  E  I  W  T  N  F  G  D  T  F   : D  V  N  S  Y  D  K  V  C  R  L  A  N  G  D  S  K  H  L  F  I  *  E  M  I  Y  K  R  G  H  I  S  S  Y  F  C  C  I  V  P  E  F  Q  C  I  I  S  S  L  K  Y  S  *  K  L  W  I  F  S  F  Y  L  G  F  H  Q  Q  K  L  S  S  V  L  R  C  K  L  V  F  L  Q  L  M  L  F  G  I  L  N  T  N  I  C  G  S  T  S  *  S  T  W  H  *  T  S  C  V  T  Y  I  S  C  N  L  *  V  *  T  M  S  S   </first_frame>
            <second_frame>  *  T  W  T  C  Q  I  L  P  S  L  S  M  L  S  S  S  R  S  M  *  D  G  R  F  E  Q  W  F  R  L  C  N  L  M  V  I  K  S  L  E  N  P  R  M  K  K  N  *  L  *  K  E  I  H  L  M  L  F  Q  L  L  L  K  *  L  V  *  L  T  L  S  S  L  L  K  Q  K  F  G  P  I  L  V  I  H  L  :  M  L  I  A  M  T  R  C  A  D  *  Q  M  V  T  V  S  T  C  L  S  E  K  *  F  I  K  E  D  I  Y  P  L  I  S  A  A  L  F  Q  S  F  N  V  L  *  V  V  *  S  T  P  E  N  F  G  F  S  A  S  I  *  G  F  I  N  R  S  *  A  L  C  L  D  V  N  L  F  F  F  N  L  C  Y  L  V  F  *  T  L  I  F  V  V  P  L  V  S  Q  L  G  I  K  L  A  V  L  H  T  *  V  V  T  C  K  Y  E  L  C  L  V  </second_frame>
            <third_frame>   R  H  G  H  V  K  S  C  R  L  C  Q  C  *  V  P  Q  G  A  C  R  T  E  G  S  N  S  G  S  G  Y  A  I  *  W  *  *  S  H  W  K  I  H  G  *  K  R  I  S  C  E  R  K  S  T  *  C  S  F  N  F  C  *  S  N  W  Y  S  *  H  Y  P  V  Y  *  S  R  N  L  D  Q  F  W  *  Y  I  * :   C  *  *  L  *  Q  G  V  Q  T  S  K  W  *  Q  *  A  L  V  Y  L  R  N  D  L  *  K  R  T  Y  I  L  L  F  L  L  H  C  S  R  V  S  M  Y  Y  K  *  F  E  V  L  L  K  T  L  D  F  Q  L  L  F  R  V  S  S  T  E  V  K  L  C  A  *  M  *  T  C  F  S  S  T  Y  A  I  W  Y  F  E  H  *  Y  L  W  F  H  *  L  V  N  L  A  L  N  *  L  C  Y  I  H  K  L  *  L  V  S  M  N  Y  V  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5009" stop="4748"/>
                    <exon start="3652" stop="3588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDMDMSNPAVFVNAEFLKEHVGRKVRTVVQVMQSDGDKVIGKSTDEKELVVKGNPPNALSTFVEVIGIADTIQSIEAEIWTNFGDTFDVNSYDKVCRLANGDSKHLFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="5943" PGL_stop="5170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5943" e_stop="5170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5943" e_stop="5170" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5943" stop="5170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5942" stop="5354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</gDNA_template>
            <first_frame> S  L  C  V  Y  W  F  *  F  *  T  L  Q  F  C  F  N  N  E  F  L  F  P  G  V  Y  P  *  F  S  V  *  R  F  P  *  F  T  F  N  S  V  S  S  C  Y  T  K  L  *  *  I  D  L  F  F  F  L  M  I  W  V  V  T  L  C  S  F  V  *  L  V  L  Y  F  L  *  L  W  V  M  K  N  Q  G  S  W  K  C  F  A  I  F  F  K  K  K  I  L  E  K  N  A  V  N  G  K  L  *  F  P  N  D  I  Y  V  I  L  *  T  M  E  S  I  E  V  M  V  *  C  K  I  *  C  *  K  F  *  R  V  R  I  V  *  S  C  L  V  D  A  Y  C  A  C  S  M  M  D  V  I  V  F  I  *  A  T  V  N  S  I  V  V  F  *  F  S  M  V  *  E  T  L  T  H  R  L  L  I  C  C  L  L  K  F  *  L  Q  E  L  V  K  V  Y  K  V  Y  Y  L  F  T  R  A  L  E  P  E  A  *  Y  W  K  E  M  E  R  F  L  S  I  Y  E  F  *  I  *  F  S  S  L  V  Q  L  V  V  E  M  L  V  D  V  I  Y  H  S  K  S  *  I </first_frame>
            <second_frame>  V  C  V  F  T  G  F  D  F  E  P  F  S  F  V  L  I  M  S  F  C  F  P  V  S  T  H  N  F  L  C  R  D  F  P  D  L  H  L  I  V  Y  Q  V  A  T  Q  N  C  D  K  *  I  F  S  F  F  *  *  F  G  L  L  H  F  V  H  L  C  N  W  F  C  T  F  C  N  Y  G  *  *  K  I  K  V  L  G  S  V  L  Q  F  F  L  K  K  K  S  L  K  K  M  Q  S  M  V  N  Y  D  S  Q  M  I  S  M  S  F  F  E  Q  W  N  L  L  R  *  W  F  D  V  K  Y  D  V  R  S  F  S  G  L  E  L  F  N  L  V  *  *  M  R  T  V  H  V  R  *  W  M  *  L  F  L  Y  K  Q  L  L  I  V  L  S  Y  S  D  F  R  W  C  K  K  L  *  L  T  G  F  *  F  V  V  F  *  S  F  N  C  K  S  L  *  K  C  I  R  F  T  I  C  L  L  E  L  L  N  Q  K  L  N  I  G  K  R  W  K  G  F  *  A  F  M  S  S  E  F  D  F  L  H  W  Y  S  *  S  L  K  C  L  *  M  *  Y  I  T  Q  N  P  K   </second_frame>
            <third_frame>   F  V  C  L  L  V  L  I  L  N  P  S  V  L  F  *  *  *  V  F  V  S  R  C  L  P  I  I  F  C  V  E  I  S  L  I  Y  I  *  *  C  I  K  L  L  H  K  I  V  I  N  R  S  F  L  F  F  N  D  L  G  C  Y  T  L  F  I  C  V  I  G  F  V  L  S  V  I  M  G  N  E  K  S  R  F  L  E  V  F  C  N  F  F  *  K  K  N  P  *  K  K  C  S  Q  W  *  I  M  I  P  K  *  Y  L  C  H  S  L  N  N  G  I  Y  *  G  N  G  L  M  *  N  M  M  L  E  V  L  A  G  *  N  C  L  I  L  F  S  R  C  V  L  C  M  F  D  D  G  C  D  C  F  Y  I  S  N  C  *  *  Y  C  R  I  L  I  F  D  G  V  R  N  F  N  S  Q  A  S  D  L  L  S  F  K  V  L  I  A  R  A  C  E  S  V  *  G  L  L  F  V  Y  *  S  S  *  T  R  S  L  I  L  E  R  D  G  K  V  F  K  H  L  *  V  L  N  L  I  F  F  I  G  T  A  S  R  *  N  A  C  R  C  D  I  S  L  K  I  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="10783" PGL_stop="6751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10783" e_stop="10730"/>
            <exon e_start="8791" e_stop="8604"/>
            <exon e_start="8022" e_stop="7893"/>
            <exon e_start="7198" e_stop="6751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.521" e_score="0.963"/>
          <exon-intron don_prob="0.999" acc_prob="0.756" e_score="0.973"/>
          <exon-intron don_prob="0.981" acc_prob="0.982" e_score="0.985"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="10783" e_stop="10730" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.521">
            <gDNA_intron_boundary i_start="10729" i_stop="8792" i_length="1938"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="8791" e_stop="8604" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.756">
            <gDNA_intron_boundary i_start="8603" i_stop="8023" i_length="581"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="8022" e_stop="7893" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.982">
            <gDNA_intron_boundary i_start="7892" i_stop="7199" i_length="694"/>
          </intron>
          <exon e_serial="4" e_score="0.929">
            <gDNA_exon_boundary e_start="7198" e_stop="6751" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10783" stop="10730"/>
              <exon start="8791" stop="8604"/>
              <exon start="8022" stop="7893"/>
              <exon start="7198" stop="6828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10783" stop="10730"/>
              <exon start="8791" stop="8604"/>
              <exon start="8022" stop="7893"/>
              <exon start="7198" stop="6873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7949" stop="7893"/>
              <exon start="7198" stop="6751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431511" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCATACGAATCAAGAGTTTAAGGAGAAACATTGGCTTGGTCTCTCAAGATACA : ACATTATTTTCTGGAAGTGTTGCCGAGAACATTGGATATAGGGATAGAATGGCTGGTATTGATATGGAGAGGGTGAAGCTTGCTGCCAGAAATGCAAGTGCGGAAGAATTTATTGAAGCGCTGCCTCTTAGCTATGAGACAAATGTTGGACCTAGGGGCTCAATTTTCAGTGGAGGGCAGAAGCAAAG : AATAGCTATTGCTCGGGCTCTTTATCAGGATCCATCTATTCTAATATTGGATGAAGCTACTTCAGCATTAGACAGCAAGTCAGAGCTGTTGGTAAGACAAGCTCTGCAGCACCTGATGCAAAATCGTACT : GTACTAGTGATTGCTCACCGCTTGGAAACAGTTTTAATGGCTGAACGAGTTTTCCTTTTAGAAGATGGATACTTGCAGGAGGTTCCTCGCGCCTCTCTTTTAGACAGTCGAAGTGGCTCACTGGCATCGATGAGTTTAACAATATGATGTTTATATGAAGCTAAAGGTCTGCTTCTTGGAAATGAATATGCATTTGTTGCTCTAGTATGGAAGTATGTCCTACAACTTCCTTATCCTTCCCATGTAAGCTGCTCGTCGCGTCAAATGCCCCTTTATATGAAGCTAAAGGTCTGTAAAGTGTTGTAAACTGCTTGTACAAGTACTTACAGAGTGATGTATATCATTGAATATCTTTACATACGTTAGAAAATGCACCAGAGGCAACACAATAATGTTTTTTTTTTGGGCCTCGTATATTCTAGTGGTAAATGATCAATTGAATTTAAGT</gDNA_template>
            <first_frame> G  I  R  I  K  S  L  R  R  N  I  G  L  V  S  Q  D  T  :  T  L  F  S  G  S  V  A  E  N  I  G  Y  R  D  R  M  A  G  I  D  M  E  R  V  K  L  A  A  R  N  A  S  A  E  E  F  I  E  A  L  P  L  S  Y  E  T  N  V  G  P  R  G  S  I  F  S  G  G  Q  K  Q  R :   I  A  I  A  R  A  L  Y  Q  D  P  S  I  L  I  L  D  E  A  T  S  A  L  D  S  K  S  E  L  L  V  R  Q  A  L  Q  H  L  M  Q  N  R  T  :  V  L  V  I  A  H  R  L  E  T  V  L  M  A  E  R  V  F  L  L  E  D  G  Y  L  Q  E  V  P  R  A  S  L  L  D  S  R  S  G  S  L  A  S  M  S  L  T  I  *  C  L  Y  E  A  K  G  L  L  L  G  N  E  Y  A  F  V  A  L  V  W  K  Y  V  L  Q  L  P  Y  P  S  H  V  S  C  S  S  R  Q  M  P  L  Y  M  K  L  K  V  C  K  V  L  *  T  A  C  T  S  T  Y  R  V  M  Y  I  I  E  Y  L  Y  I  R  *  K  M  H  Q  R  Q  H  N  N  V  F  F  L  G  L  V  Y  S  S  G  K  *  S  I  E  F  K  </first_frame>
            <second_frame>  A  Y  E  S  R  V  *  G  E  T  L  A  W  S  L  K  I  Q :   H  Y  F  L  E  V  L  P  R  T  L  D  I  G  I  E  W  L  V  L  I  W  R  G  *  S  L  L  P  E  M  Q  V  R  K  N  L  L  K  R  C  L  L  A  M  R  Q  M  L  D  L  G  A  Q  F  S  V  E  G  R  S  K   : E  *  L  L  L  G  L  F  I  R  I  H  L  F  *  Y  W  M  K  L  L  Q  H  *  T  A  S  Q  S  C  W  *  D  K  L  C  S  T  *  C  K  I  V  L :   Y  *  *  L  L  T  A  W  K  Q  F  *  W  L  N  E  F  S  F  *  K  M  D  T  C  R  R  F  L  A  P  L  F  *  T  V  E  V  A  H  W  H  R  *  V  *  Q  Y  D  V  Y  M  K  L  K  V  C  F  L  E  M  N  M  H  L  L  L  *  Y  G  S  M  S  Y  N  F  L  I  L  P  M  *  A  A  R  R  V  K  C  P  F  I  *  S  *  R  S  V  K  C  C  K  L  L  V  Q  V  L  T  E  *  C  I  S  L  N  I  F  T  Y  V  R  K  C  T  R  G  N  T  I  M  F  F  F  W  A  S  Y  I  L  V  V  N  D  Q  L  N  L  S </second_frame>
            <third_frame>   H  T  N  Q  E  F  K  E  K  H  W  L  G  L  S  R  Y   : N  I  I  F  W  K  C  C  R  E  H  W  I  *  G  *  N  G  W  Y  *  Y  G  E  G  E  A  C  C  Q  K  C  K  C  G  R  I  Y  *  S  A  A  S  *  L  *  D  K  C  W  T  *  G  L  N  F  Q  W  R  A  E  A  K  :  N  S  Y  C  S  G  S  L  S  G  S  I  Y  S  N  I  G  *  S  Y  F  S  I  R  Q  Q  V  R  A  V  G  K  T  S  S  A  A  P  D  A  K  S  Y   : C  T  S  D  C  S  P  L  G  N  S  F  N  G  *  T  S  F  P  F  R  R  W  I  L  A  G  G  S  S  R  L  S  F  R  Q  S  K  W  L  T  G  I  D  E  F  N  N  M  M  F  I  *  S  *  R  S  A  S  W  K  *  I  C  I  C  C  S  S  M  E  V  C  P  T  T  S  L  S  F  P  C  K  L  L  V  A  S  N  A  P  L  Y  E  A  K  G  L  *  S  V  V  N  C  L  Y  K  Y  L  Q  S  D  V  Y  H  *  I  S  L  H  T  L  E  N  A  P  E  A  T  Q  *  C  F  F  F  G  P  R  I  F  *  W  *  M  I  N  *  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10783" stop="10730"/>
                    <exon start="8791" stop="8604"/>
                    <exon start="8022" stop="7893"/>
                    <exon start="7198" stop="7052"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIRIKSLRRNIGLVSQDTTLFSGSVAENIGYRDRMAGIDMERVKLAARNASAEEFIEALPLSYETNVGPRGSIFSGGQKQRIAIARALYQDPSILILDEATSALDSKSELLVRQALQHLMQNRTVLVIAHRLETVLMAERVFLLEDGYLQEVPRASLLDSRSGSLASMSLTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15891" PGL_stop="15220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15891" e_stop="15220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="15891" e_stop="15220" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15891" stop="15358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15886" stop="15220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15886" stop="15344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGACCAAAATTAGAGTGGATGGATGTTAAGGGACCAAAAACGTAAATACCTAAATTAATCACCGGGAAATGTCCGTAATTCACCTGAAACTGCCGTCTCACGGCCGTTCGCCGTCCCTTCGCCACCACAAACTCACAGTCCCCCGCCAGGTAACCAAACCAATCACTAACATCATCTTCAATTTCTCCATTTCCACCTCTGCCTTAAAAGTAAAATCATCATCTACACGCGCCGCTGCGAACTCCGGCAAGTTCATTTCTCCGTTCACCTCTATAGCTCCTCTTAAACCTTATCTCCTTTCGGAATGGAAATCTATTCTCTGTGGATGGCTCTGTAGTGTAATATCTGTTTACTCTCTGTCCAAAATTGTTCCCAAAGTGGGAAAATTCTCGTCTCTCATGAATCCGTTGGATGTTGTGAGGCTGAGAGAGGAGTGTTTGGTTTTGGGAGGTTTGTTTTTCGTTCGACTCGTTGGTAATTATCTGCAACAAGCGTTTCTATGGGAAGCTGCGTTGAATTGCGTGTATAAGATGAGGATTTGTGTTTTCCATAAGGTTTTGCAGAGAGATTTAGGATTTTTTGAGGGAGAAAAAGGGATTGCTGCTGGAGATGTTGCTTATAGGATTACTGCTGAAGCTTCTGATGTTGCTGATACTGTTTATTCTCTCTTG</gDNA_template>
            <first_frame> R  T  K  I  R  V  D  G  C  *  G  T  K  N  V  N  T  *  I  N  H  R  E  M  S  V  I  H  L  K  L  P  S  H  G  R  S  P  S  L  R  H  H  K  L  T  V  P  R  Q  V  T  K  P  I  T  N  I  I  F  N  F  S  I  S  T  S  A  L  K  V  K  S  S  S  T  R  A  A  A  N  S  G  K  F  I  S  P  F  T  S  I  A  P  L  K  P  Y  L  L  S  E  W  K  S  I  L  C  G  W  L  C  S  V  I  S  V  Y  S  L  S  K  I  V  P  K  V  G  K  F  S  S  L  M  N  P  L  D  V  V  R  L  R  E  E  C  L  V  L  G  G  L  F  F  V  R  L  V  G  N  Y  L  Q  Q  A  F  L  W  E  A  A  L  N  C  V  Y  K  M  R  I  C  V  F  H  K  V  L  Q  R  D  L  G  F  F  E  G  E  K  G  I  A  A  G  D  V  A  Y  R  I  T  A  E  A  S  D  V  A  D  T  V  Y  S  L  L </first_frame>
            <second_frame>  G  P  K  L  E  W  M  D  V  K  G  P  K  T  *  I  P  K  L  I  T  G  K  C  P  *  F  T  *  N  C  R  L  T  A  V  R  R  P  F  A  T  T  N  S  Q  S  P  A  R  *  P  N  Q  S  L  T  S  S  S  I  S  P  F  P  P  L  P  *  K  *  N  H  H  L  H  A  P  L  R  T  P  A  S  S  F  L  R  S  P  L  *  L  L  L  N  L  I  S  F  R  N  G  N  L  F  S  V  D  G  S  V  V  *  Y  L  F  T  L  C  P  K  L  F  P  K  W  E  N  S  R  L  S  *  I  R  W  M  L  *  G  *  E  R  S  V  W  F  W  E  V  C  F  S  F  D  S  L  V  I  I  C  N  K  R  F  Y  G  K  L  R  *  I  A  C  I  R  *  G  F  V  F  S  I  R  F  C  R  E  I  *  D  F  L  R  E  K  K  G  L  L  L  E  M  L  L  I  G  L  L  L  K  L  L  M  L  L  I  L  F  I  L  S   </second_frame>
            <third_frame>   D  Q  N  *  S  G  W  M  L  R  D  Q  K  R  K  Y  L  N  *  S  P  G  N  V  R  N  S  P  E  T  A  V  S  R  P  F  A  V  P  S  P  P  Q  T  H  S  P  P  P  G  N  Q  T  N  H  *  H  H  L  Q  F  L  H  F  H  L  C  L  K  S  K  I  I  I  Y  T  R  R  C  E  L  R  Q  V  H  F  S  V  H  L  Y  S  S  S  *  T  L  S  P  F  G  M  E  I  Y  S  L  W  M  A  L  *  C  N  I  C  L  L  S  V  Q  N  C  S  Q  S  G  K  I  L  V  S  H  E  S  V  G  C  C  E  A  E  R  G  V  F  G  F  G  R  F  V  F  R  S  T  R  W  *  L  S  A  T  S  V  S  M  G  S  C  V  E  L  R  V  *  D  E  D  L  C  F  P  *  G  F  A  E  R  F  R  I  F  *  G  R  K  R  D  C  C  W  R  C  C  L  *  D  Y  C  *  S  F  *  C  C  *  Y  C  L  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15837" stop="15220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INHREMSVIHLKLPSHGRSPSLRHHKLTVPRQVTKPITNIIFNFSISTSALKVKSSSTRAAANSGKFISPFTSIAPLKPYLLSEWKSILCGWLCSVISVYSLSKIVPKVGKFSSLMNPLDVVRLREECLVLGGLFFVRLVGNYLQQAFLWEAALNCVYKMRICVFHKVLQRDLGFFEGEKGIAAGDVAYRITAEASDVADTVYSLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="16049" PGL_stop="16340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16049" e_stop="16340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="16049" e_stop="16340" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16049" stop="16340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16050" stop="16224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  I  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  R  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  G  Q  R  Q  R  Q  F  T  R  N  C  R  N  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  T  W  A  L  V  L  A  W  M  M  A  K  Q  Y  N  T  S  S  R  C  L  G  V  G  K  A  A  *  T  C  M  D  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  V  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  Y  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  W  H  G  *  W  Q  N  S  T  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  I  T  C  G  L  K  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  P  K  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="19563" PGL_stop="17335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19563" e_stop="17335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="19563" e_stop="17335" e_length="2229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19563" stop="17335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19489" stop="18735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19489" stop="18803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19312" stop="18786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19310" stop="18812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18604" stop="18135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18582" stop="18231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18376" stop="17774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17579" stop="17338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGATACT</gDNA_template>
            <first_frame> *  *  L  L  I  S  L  L  E  D  R  K  T  L  K  M  A  D  R  A  L  C  S  L  S  F  D  *  *  I  C  G  C  E  V  I  S  L  Y  I  C  N  Q  Y  C  F  L  L  L  N  P  S  K  N  G  *  F  D  A  K  I  T  E  N  P  R  F  F  S  C  I  Y  *  Q  Y  K  *  R  N  *  *  N  *  L  F  A  G  *  Y  T  A  Q  Y  T  F  I  S  V  H  L  *  C  C  S  A  K  H  F  I  E  K  M  E  L  Y  M  E  D  N  A  L  L  E  F  *  Y  *  *  L  W  L  *  K  D  *  *  A  L  G  Y  G  Y  G  *  E  I  Q  R  F  Y  Q  L  G  V  D  *  P  M  W  G  *  P  C  L  F  *  A  L  L  W  G  Y  F  W  *  K  G  Y  F  S  M  G  S  C  C  D  S  S  K  C  S  R  T  R  V  R  F  L  S  C  *  A  I  *  V  A  I  L  C  C  D  L  *  I  L  A  S  F  E  I  T  A  *  W  V  C  T  *  V  V  *  S  F  W  I  S  S  A  *  I  S  S  S  *  K  S  *  V  I  K  R  A  F  D  E  L  L  V  L  K  T  R  E  T  G  I  G  W  L  Y  F  W  N  Y  D  Y  A  *  Y  C  F  N  V  S  G  L  C  V  S  T  E  L  C  Q  *  R  R  S  L  Q  Q  L  Y  R  Q  D  F  L  P  E  S  Q  G  L  E  I  W  C  S  I  G  K  G  Y  D  H  R  E  S  L  V  Y  R  S  C  S  H  L  I  F  L  F  R  R  C  N  K  R  N  W  N  A  F  A  *  G  V  Q  E  C  R  F  Y  I  S  F  E  I  M  Q  R  F  C  C  W  F  V  *  C  I  S  W  S  K  K  L  P  G  H  V  L  *  A  Q  V  L  K  I  G  S  G  N  *  R  I  L  H  G  N  H  D  A  I  A  Q  A  F  S  *  F  R  G  S  *  F  V  F  *  *  E  L  R  L  G  *  K  L  E  V  P  *  S  *  *  K  R  F  V  P  G  V  S  S  K  V  D  S  V  G  W  F  Q  K  *  R  *  R  D  R  A  T  E  V  F  P  Q  E  C  T  S  I  R  R  T  D  N  C  L  G  *  L  *  W  H  I  R  R  G  N  R  G  G  F  Q  L  S  *  S  F  F  T  C  C  C  L  I  S  *  F  Q  T  Q  I  K  I  S  L  P  G  Q  F  S  L  K  E  V  L  I  V  R  R  Y  V  A  W  T  W  T  L  Q  K  C  C  T  T  F  G  R  S  D  I  H  L  K  C  P  S  N  I  G  *  K  Y  P  F  W  E  L  V  H  E  Q  A  H  E  A  L  T  N  F  Y  Y  C  F  A  F  S  K  S  T  G  Q  T  S  M  K  H  I  *  L  R  T  K  K  H  S  T  C  R  Q  M  L  H  A  Y  T  R  F  R  K  Y  Q  S  S  L  S  A  L  Y  G  C  C  *  P  L  K  R  V  L  L  C  F  R  T  R  V  G  H  A  I  H  S  *  R  C  I  *  M  L  *  S  *  R  R  S  G  C  P  C  K  Y  *  C  F  W  C  I  S  T  P  N  Y  S  S  Q  L  *  A  R  C  L  C  N  L  F  R  L  M  N  N  L  S  H  V  N  Y  L  I  S  F  V  T  F  A  S  S  *  C  F  S  Q  *  N  L  L  I  S  S  K  R  M  D  T </first_frame>
            <second_frame>  N  D  Y  *  L  A  F  *  K  I  G  K  P  *  K  W  L  I  E  L  S  V  H  S  H  L  T  D  K  S  A  D  A  R  *  S  H  Y  I  F  V  I  S  T  V  F  C  F  *  I  L  Q  K  M  D  D  L  M  Q  K  S  L  K  T  P  D  F  L  A  V  F  T  N  S  T  S  E  G  I  D  R  I  S  Y  L  P  D  D  I  L  H  N  I  L  S  Y  L  Y  I  F  D  V  V  Q  L  S  I  L  S  K  R  W  N  Y  I  W  R  T  M  P  Y  L  N  F  D  I  N  S  F  G  C  E  R  I  D  R  L  W  D  M  G  M  A  E  K  F  K  D  F  I  N  W  V  L  I  N  R  C  G  D  S  L  V  C  F  K  L  C  C  G  D  I  F  G  K  R  A  I  F  R  W  V  R  V  V  T  A  R  N  V  Q  E  L  V  L  D  F  C  P  A  E  P  F  E  L  P  Y  C  V  V  T  C  E  S  L  R  V  L  K  L  R  L  D  G  S  V  L  K  L  S  N  H  F  G  F  H  Q  L  K  F  L  H  L  E  K  V  E  L  S  N  E  H  L  T  S  C  L  F  S  R  L  E  K  L  V  L  D  G  C  T  F  G  T  M  T  M  L  D  I  V  S  T  S  L  V  Y  V  S  L  L  N  Y  V  N  N  V  E  A  Y  N  N  C  I  V  K  I  S  C  P  N  L  K  V  L  K  Y  G  A  P  L  A  K  D  M  I  I  E  N  L  L  S  I  E  V  V  H  I  L  F  F  Y  S  D  D  V  I  K  E  I  G  M  R  L  H  K  V  F  K  N  V  A  S  T  S  A  L  K  L  C  K  G  S  V  V  G  L  Y  S  V  F  H  G  V  R  N  F  P  V  T  F  Y  K  L  K  S  L  K  L  A  V  A  I  D  E  S  C  M  E  I  M  M  L  L  L  K  H  S  P  N  L  E  V  L  N  L  F  S  D  E  N  Y  G  W  D  E  N  W  K  F  H  D  P  S  E  S  V  L  C  L  E  S  H  L  K  L  I  Q  L  A  G  F  K  N  E  D  K  E  I  E  L  L  R  F  F  L  K  N  A  Q  V  L  E  E  L  I  I  V  W  D  S  C  S  G  I  S  E  E  A  I  E  E  V  S  N  F  P  R  A  S  S  H  V  V  V  S  F  L  N  F  K  P  K  S  R  S  R  Y  R  D  N  S  V  *  K  R  F  *  L  *  D  A  M  L  L  G  L  G  L  S  K  N  V  V  L  L  L  E  G  P  T  Y  I  *  S  V  Q  V  T  *  V  R  S  T  L  F  G  N  *  C  M  S  K  H  M  K  P  *  R  I  S  T  T  V  S  P  F  Q  R  A  L  D  R  L  Q  *  S  I  F  D  S  G  Q  R  S  I  Q  L  V  D  R  C  Y  M  R  I  Q  D  L  G  S  I  S  H  L  F  L  H  Y  M  V  V  V  D  L  *  N  V  F  Y  Y  V  F  G  L  A  *  V  M  P  Y  T  V  K  D  A  Y  E  C  F  N  H  E  E  D  L  D  V  P  A  S  I  D  V  F  G  V  F  Q  L  Q  I  T  P  P  N  Y  K  L  D  V  C  V  T  Y  L  G  *  *  T  T  *  V  M  *  I  T  *  S  L  L  *  L  L  H  L  H  D  V  F  L  N  K  T  Y  L  F  H  Q  R  E  W  I   </second_frame>
            <third_frame>   M  I  T  D  *  P  F  R  R  S  E  N  P  K  N  G  *  S  S  S  L  F  T  L  I  *  L  I  N  L  R  M  R  G  N  L  T  I  Y  L  *  S  V  L  F  S  A  F  K  S  F  K  K  W  M  I  *  C  K  N  H  *  K  P  P  I  F  *  L  Y  L  L  T  V  Q  V  K  E  L  I  E  L  A  I  C  R  M  I  Y  C  T  I  Y  F  H  I  C  T  S  L  M  L  F  S  *  A  F  Y  R  K  D  G  T  I  Y  G  G  Q  C  L  T  *  I  L  I  L  I  A  L  V  V  K  G  L  I  G  F  G  I  W  V  W  L  R  N  S  K  I  L  S  I  G  C  *  L  T  D  V  G  I  A  L  F  V  L  S  F  V  V  G  I  F  L  V  K  G  L  F  F  D  G  F  V  L  *  Q  L  E  M  F  K  N  S  C  *  I  F  V  L  L  S  H  L  S  C  H  I  V  L  *  L  V  N  P  C  E  F  *  N  Y  G  L  M  G  L  Y  L  S  C  L  I  I  L  D  F  I  S  L  N  F  F  I  L  K  K  L  S  Y  Q  T  S  I  *  R  V  A  C  S  Q  D  *  R  N  W  Y  W  M  V  V  L  L  E  L  *  L  C  L  I  L  F  Q  R  L  W  F  M  C  L  Y  *  T  M  S  I  T  *  K  L  T  T  I  V  S  S  R  F  L  A  R  I  S  R  S  *  N  M  V  L  H  W  Q  R  I  *  S  *  R  I  S  C  L  *  K  L  F  T  S  Y  F  F  I  Q  T  M  *  *  K  K  L  E  C  V  C  I  R  C  S  R  M  S  L  L  H  Q  L  *  N  Y  A  K  V  L  L  L  V  C  I  V  Y  F  M  E  *  E  T  S  R  S  R  F  I  S  S  S  P  *  N  W  Q  W  Q  L  T  N  L  A  W  K  S  *  C  Y  C  S  S  I  L  L  I  *  R  F  L  I  C  F  L  M  R  I  T  V  G  M  K  T  G  S  S  M  I  L  V  K  A  F  C  A  W  S  L  I  *  S  *  F  S  W  L  V  S  K  M  K  I  K  R  *  S  Y  *  G  F  S  S  R  M  H  K  Y  *  K  N  *  *  L  F  G  I  A  V  V  A  Y  Q  K  R  Q  *  R  R  F  P  T  F  L  E  L  L  H  M  L  L  S  H  F  L  I  S  N  P  N  Q  D  L  V  T  G  T  I  Q  F  K  R  G  S  D  C  E  T  L  C  C  L  D  L  D  S  P  K  M  L  Y  Y  F  W  K  V  R  H  T  F  E  V  S  K  *  H  R  L  E  V  P  F  L  G  T  S  A  *  A  S  T  *  S  L  N  E  F  L  L  L  F  R  L  F  K  E  H  W  T  D  F  N  E  A  Y  L  T  P  D  K  E  A  F  N  L  S  T  D  V  T  C  V  Y  K  I  *  E  V  S  V  I  S  F  C  T  I  W  L  L  L  T  S  E  T  C  F  I  M  F  S  D  S  R  R  S  C  H  T  Q  L  K  M  H  M  N  A  L  I  M  K  K  I  W  M  S  L  Q  V  L  M  F  L  V  Y  F  N  S  K  L  L  L  P  T  I  S  *  M  F  V  *  L  I  *  V  D  E  Q  L  K  S  C  K  L  L  D  L  F  C  N  F  C  I  F  M  M  F  F  S  I  K  L  T  Y  F  I  K  E  N  G  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19415" stop="17964"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILQKMDDLMQKSLKTPDFLAVFTNSTSEGIDRISYLPDDILHNILSYLYIFDVVQLSILSKRWNYIWRTMPYLNFDINSFGCERIDRLWDMGMAEKFKDFINWVLINRCGDSLVCFKLCCGDIFGKRAIFRWVRVVTARNVQELVLDFCPAEPFELPYCVVTCESLRVLKLRLDGSVLKLSNHFGFHQLKFLHLEKVELSNEHLTSCLFSRLEKLVLDGCTFGTMTMLDIVSTSLVYVSLLNYVNNVEAYNNCIVKISCPNLKVLKYGAPLAKDMIIENLLSIEVVHILFFYSDDVIKEIGMRLHKVFKNVASTSALKLCKGSVVGLYSVFHGVRNFPVTFYKLKSLKLAVAIDESCMEIMMLLLKHSPNLEVLNLFSDENYGWDENWKFHDPSESVLCLESHLKLIQLAGFKNEDKEIELLRFFLKNAQVLEELIIVWDSCSGISEEAIEEVSNFPRASSHVVVSFLNFKPKSRSRYRDNSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17677" stop="17468"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSVISFCTIWLLLTSETCFIMFSDSRRSCHTQLKMHMNALIMKKIWMSLQVLMFLVYFNSKLLLPTIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25248" PGL_stop="22392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25248" e_stop="25148"/>
            <exon e_start="24526" e_stop="24389"/>
            <exon e_start="24299" e_stop="24156"/>
            <exon e_start="23890" e_stop="23815"/>
            <exon e_start="23545" e_stop="23460"/>
            <exon e_start="23349" e_stop="23224"/>
            <exon e_start="22756" e_stop="22392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25248" e_stop="25148" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25147" i_stop="24527" i_length="621"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24526" e_stop="24389" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24388" i_stop="24300" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24299" e_stop="24156" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="24155" i_stop="23891" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23890" e_stop="23815" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.881" acc_prob="0.948">
            <gDNA_intron_boundary i_start="23814" i_stop="23546" i_length="269"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23545" e_stop="23460" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="23459" i_stop="23350" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23349" e_stop="23224" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.868">
            <gDNA_intron_boundary i_start="23223" i_stop="22757" i_length="467"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="22756" e_stop="22392" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25248" stop="25148"/>
              <exon start="24526" stop="24389"/>
              <exon start="24299" stop="24156"/>
              <exon start="23890" stop="23815"/>
              <exon start="23545" stop="23460"/>
              <exon start="23349" stop="23224"/>
              <exon start="22756" stop="22659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25248" stop="25148"/>
              <exon start="24526" stop="24389"/>
              <exon start="24299" stop="24156"/>
              <exon start="23890" stop="23815"/>
              <exon start="23545" stop="23460"/>
              <exon start="23349" stop="23224"/>
              <exon start="22756" stop="22661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25248" stop="25148"/>
              <exon start="24526" stop="24389"/>
              <exon start="24299" stop="24156"/>
              <exon start="23890" stop="23815"/>
              <exon start="23545" stop="23460"/>
              <exon start="23349" stop="23258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24463" stop="24389"/>
              <exon start="24299" stop="24156"/>
              <exon start="23890" stop="23815"/>
              <exon start="23545" stop="23460"/>
              <exon start="23349" stop="23228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24436" stop="24389"/>
              <exon start="24299" stop="24156"/>
              <exon start="23890" stop="23815"/>
              <exon start="23545" stop="23460"/>
              <exon start="23349" stop="23228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23539" stop="23460"/>
              <exon start="23349" stop="23224"/>
              <exon start="22756" stop="22392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG : GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG : AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG : GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG : GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</gDNA_template>
            <first_frame> L  W  S  Q  H  S  I  S  K  L  E  L  L  V  P  S  *  R  S  *  M  E  I  L  G  V  E  Q  L  *  V  S  R  R :   Y  Q  E  S  Q  S  S  S  *  E  G  V  N  V  W  R  T  L  N  L  S  I  L  T  A  W  L  D  V  F  *  E  W  E  M  F  Y  R  L  L  R  K  P  K  K  L :   C  V  K  K  M  L  K  I  C  R  R  R  S  *  V  Q  N  L  I  S  M  T  S  *  S  K  L  G  Q  L  L  G  W  V  P  C  R  V  L  L  V  *  C  L  A  W  E  R :   L  L  L  H  K  F  E  R  Q  R  R  A  *  R  *  W  S  Q  *  *  M  S  *  H  Q  :  R  R  G  S  N  Q  N  C  *  Q  N  L  L  L  E  G  N  V  S  L  K  N  L  G  K  L  S  N  R :   *  V  N  L  L  L  N  F  F  K  C  V  Y  V  *  R  I  *  W  A  L  W  K  V  V  R  F  L  H  *  V  I  *  R  R  H  *  N  L  N  S  R :   L  L  P  V  L  Q  G  G  S  E  G  Q  N  Q  G  N  N  L  Q  T  R  D  Q  L  G  L  A  L  V  V  S  G  P  R  T  E  V  *  D  *  Y  V  K  Q  I  F  E  S  L  T  S  Y  L  *  V  S  T  R  K  R  N  C  E  Q  K  R  K  *  S  T  R  K  G  K  F  L  T  R  *  Y  I  V  H  C  M  Y  S  Q  L  Y  S  F  V  P  L  L  V  *  L  L  S  S  *  Y  I  L  L  S  C  N  L  E  N  F  I  V  F  P  T  P  L  </first_frame>
            <second_frame>  F  G  H  N  I  Q  S  R  N  W  N  Y  W  C  H  L  D  E  A  R  W  R  F  *  G  W  S  S  F  K  C  Q  G   : G  I  R  K  A  N  Q  A  R  R  K  G  *  T  Y  G  G  P  *  T  F  L  S  *  P  H  G  W  T  Y  F  R  N  G  R  C  S  I  V  C  *  E  S  P  R  S   : Y  A  S  R  R  C  *  R  F  A  E  E  D  H  E  C  K  I  *  F  Q  *  L  P  E  A  N  S  G  S  C  *  D  G  Y  H  V  A  C  Y  W  Y  D  A  W  H  G  K   : G  Y  S  C  T  N  S  R  G  R  E  E  L  K  D  N  G  V  N  D  R  C  H  D  T  R :   G  E  G  A  T  R  I  V  S  R  I  S  C  *  K  E  T  Y  R  S  R  I  W  E  N  *  A  T   : G  E  S  T  C  C  S  T  F  S  N  A  C  T  Y  E  E  F  D  G  R  Y  G  R  W  F  D  S  C  T  E  *  S  R  G  G  T  K  I  *  T  A   : G  S  S  R  Y  C  K  E  E  A  K  V  R  T  K  E  T  I  C  R  L  G  I  S  *  A  *  P  S  W  F  R  G  Q  E  L  K  Y  K  T  S  M  S  N  K  F  L  N  L  *  L  A  I  Y  E  Y  Q  L  E  K  G  I  V  S  K  K  G  N  D  Q  L  E  K  G  S  S  *  Q  D  N  I  *  Y  I  V  C  T  L  N  Y  I  V  L  S  L  F  L  C  N  Y  C  L  L  D  I  S  Y  Y  L  V  I  L  K  I  S  L  F  F  P  L  L  * </second_frame>
            <third_frame>   L  V  T  T  F  N  L  E  I  G  I  T  G  A  I  L  T  K  L  D  G  D  S  R  G  G  A  A  L  S  V  K  E  :  V  S  G  K  P  I  K  L  V  G  R  G  E  R  M  E  D  L  E  P  F  Y  P  D  R  M  A  G  R  I  L  G  M  G  D  V  L  S  F  V  E  K  A  Q  E  V  :  M  R  Q  E  D  A  E  D  L  Q  K  K  I  M  S  A  K  F  D  F  N  D  F  L  K  Q  T  R  A  V  A  R  M  G  T  M  S  R  V  I  G  M  M  P  G  M  G  K  :  V  T  P  A  Q  I  R  E  A  E  K  S  L  K  I  M  E  S  M  I  D  V  M  T  P   : E  E  R  E  Q  P  E  L  L  A  E  S  P  A  R  R  K  R  I  A  Q  E  S  G  K  T  E  Q  Q  :  V  S  Q  L  V  A  Q  L  F  Q  M  R  V  R  M  K  N  L  M  G  V  M  E  G  G  S  I  P  A  L  S  N  L  E  E  A  L  K  S  E  Q  Q  :  A  P  P  G  T  A  R  R  K  R  R  S  E  P  R  K  Q  F  A  D  S  G  S  A  R  P  S  P  R  G  F  G  A  K  N  *  S  I  R  L  V  C  Q  T  N  F  *  I  F  D  *  L  S  M  S  I  N  *  K  K  E  L  *  A  K  K  E  M  I  N  *  K  R  E  V  L  D  K  I  I  Y  S  T  L  Y  V  L  S  T  I  *  F  C  P  S  S  C  V  T  I  V  F  L  I  Y  L  I  I  L  *  S  *  K  F  H  C  F  S  H  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25246" stop="25148"/>
                    <exon start="24526" stop="24389"/>
                    <exon start="24299" stop="24156"/>
                    <exon start="23890" stop="23815"/>
                    <exon start="23545" stop="23460"/>
                    <exon start="23349" stop="23224"/>
                    <exon start="22756" stop="22649"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVARMGTMSRVIGMMPGMGKVTPAQIREAEKSLKIMESMIDVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLEEALKSEQQAPPGTARRKRRSEPRKQFADSGSARPSPRGFGAKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="36939" PGL_stop="29565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36866" e_stop="36746"/>
            <exon e_start="33791" e_stop="33336"/>
            <exon e_start="33256" e_stop="33140"/>
            <exon e_start="32978" e_stop="32838"/>
            <exon e_start="32614" e_stop="32444"/>
            <exon e_start="31964" e_stop="31757"/>
            <exon e_start="31661" e_stop="31474"/>
            <exon e_start="30264" e_stop="30179"/>
            <exon e_start="29827" e_stop="29565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.160" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.610" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.743" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36866" e_stop="36746" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.160">
            <gDNA_intron_boundary i_start="36745" i_stop="33792" i_length="2954"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33791" e_stop="33336" e_length="456"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="33335" i_stop="33257" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33256" e_stop="33140" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.610">
            <gDNA_intron_boundary i_start="33139" i_stop="32979" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32978" e_stop="32838" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="32837" i_stop="32615" i_length="223"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32614" e_stop="32444" e_length="171"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32443" i_stop="31965" i_length="479"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31964" e_stop="31757" e_length="208"/>
          </exon>
          <intron i_serial="6" don_prob="0.916" acc_prob="0.942">
            <gDNA_intron_boundary i_start="31756" i_stop="31662" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31661" e_stop="31474" e_length="188"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31473" i_stop="30265" i_length="1209"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30264" e_stop="30179" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.932" acc_prob="0.743">
            <gDNA_intron_boundary i_start="30178" i_stop="29828" i_length="351"/>
          </intron>
          <exon e_serial="9" e_score="0.971">
            <gDNA_exon_boundary e_start="29827" e_stop="29565" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36866" stop="36746"/>
              <exon start="33791" stop="33595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36852" stop="36746"/>
              <exon start="33791" stop="33562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36845" stop="36746"/>
              <exon start="33791" stop="33336"/>
              <exon start="33256" stop="33140"/>
              <exon start="32978" stop="32838"/>
              <exon start="32614" stop="32590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36821" stop="36746"/>
              <exon start="33791" stop="33336"/>
              <exon start="33256" stop="33198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36821" stop="36746"/>
              <exon start="33791" stop="33383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33784" stop="33336"/>
              <exon start="33256" stop="33242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33545" stop="33336"/>
              <exon start="33256" stop="33140"/>
              <exon start="32978" stop="32902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33422" stop="33336"/>
              <exon start="33256" stop="33140"/>
              <exon start="32978" stop="32838"/>
              <exon start="32614" stop="32603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33391" stop="33336"/>
              <exon start="33256" stop="33140"/>
              <exon start="32978" stop="32838"/>
              <exon start="32614" stop="32444"/>
              <exon start="31964" stop="31784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33183" stop="33140"/>
              <exon start="32978" stop="32838"/>
              <exon start="32614" stop="32444"/>
              <exon start="31964" stop="31757"/>
              <exon start="31661" stop="31590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33183" stop="33140"/>
              <exon start="32978" stop="32838"/>
              <exon start="32614" stop="32444"/>
              <exon start="31964" stop="31757"/>
              <exon start="31661" stop="31657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33168" stop="33140"/>
              <exon start="32978" stop="32838"/>
              <exon start="32614" stop="32444"/>
              <exon start="31964" stop="31757"/>
              <exon start="31661" stop="31474"/>
              <exon start="30264" stop="30227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33164" stop="33140"/>
              <exon start="32978" stop="32838"/>
              <exon start="32614" stop="32456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32607" stop="32444"/>
              <exon start="31964" stop="31757"/>
              <exon start="31661" stop="31474"/>
              <exon start="30264" stop="30198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31961" stop="31757"/>
              <exon start="31661" stop="31474"/>
              <exon start="30264" stop="30179"/>
              <exon start="29827" stop="29565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424837" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31905" stop="31757"/>
              <exon start="31661" stop="31474"/>
              <exon start="30264" stop="30179"/>
              <exon start="29827" stop="29588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30264" stop="30179"/>
              <exon start="29827" stop="29641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACAAAGCGAGAGAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGG : AGTTGCAGCGCCAGATTATCTTCCTAGAAATATAAGATGCCGAGAACAAGGGCCAGTGCTGCAGCTATTAAATCTGAACCCGAGAAACCTGTTGAGACTGAAGAGCATGTTGACTTTGAAGGTGATAATGAAGAAGAGGAAGAGATTGAGTATGAAGAGGTAGAAGAAGAGGTGGAAATGGAAGAGGAAGAAGAAGAGGAGGTCGAAGAGGAGGTGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAGGAAAATGGAAGTGATGGAGCTGGTGAAGGAAAGGGGTCAGAGGATGTAAAAATGAAAGTTGATGTAGATGCTGAGGATATGGAGAAAAAGCATGCTGAGCTCCTCGCCCTTCCTCCTCATGGTTCAGAAGTGTACATAGGTGGTATTACTCATGATATATCTGAGGCAGATGTGAGGGAATTTTGTGAGACAATTGGGGAAGTTACAGAG : GTAAGAATAATGAAAGGGAAGGACTCAACTCAGAACAAAGGATATGCATTTGTTACCTATAGAAACAAGGAATTGGCAACCAAGGCTATTAAAGAGCTCAACAACACTGAACTGAAG : GGAAAAAGGGTCAAATGTTCTCCAGCTCAAGCTAAACATAAGTTATTCATTGGTAATGTTCCTAGATCCTGGGGCGAGGAAGATATGAGGACGGCTGTAACAAATGTAGGGCCTGGGGTTATTACTATTGAGTTAGTGAAG : GATCCTCTGAATTCCGGTAAAAATCGTGGATTCGCTTTTATAGAGTATTACAATCATGCATGTGCAGAGTATTCTAGACAAGAGATGTCAAATTCAGATTTTAAGCTTGATGATAATGCACCAACTGTTAGCTGGGCAGATCCCAAAAATGCTGAAACTGCTTCTTCACAG : GTTAAGGCAGTGTATGTGAAGAACTTGCCCCAACACATTAACCAAGACAAGCTAAGAGAGTTGTTTGAACATCATGGGAAAATTACAAAAGTAGTTCTTCCTCCAGCTAAACCAGGGCAAGAACAGAGCAGATATGGCTTTGTTCACTTTGCTGATAGGTCAAGTGCTATGAGGGCCCTGAAGAACACTGAAAAATATGAGATAGATG : GGAAAATTCTGGAGTGTTCACTTGCAAAGCCTCAGGTAGATCAAAAATCTTCAGGAGGATCAAGCTCACAAAAGGGAGCCACTCTTCCAATTTACCCTCCTCGTATTGGATATGGCATGATGGGAGCCCCTTATGGTGCTCTAGGTGCAGGTTTTGGTGCAGGATTTGGTGGTCCAGGTGTAGCCCAA : CCAATGGTTTATGGAAGAGGAGCTACACCTGGTGGTTTGGCAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTCCT : GCAACAACCAGGAGTTATGCATTCTCCTCCTCCAACATCACGAGGTGGACGTAGTGGAGGCAGTTCAAGTGACGGAAGGCGGGGTGACAGTGGTGGACGAGGGCGTCCCCGTTACAACCCATACTAGGTGTAAATGAACGCCATTGATGTTATAAAGCACAATGTTTGCTGTCAGTTTGACAATATTTGACTGATGTATCTGTAGCCTGTTTAAAGAATAGACTCTCATCTCTACTCTCTTCGACAAGTCTTTTTTTTTTTTT</gDNA_template>
            <first_frame> P  T  K  R  E  R  E  R  R  N  L  L  S  E  K  L  K  L  A  V  D  Y  R  F  C  F  N  S  *  R  R  K  K  G  S  Q  F  L  S  Q   : E  L  Q  R  Q  I  I  F  L  E  I  *  D  A  E  N  K  G  Q  C  C  S  Y  *  I  *  T  R  E  T  C  *  D  *  R  A  C  *  L  *  R  *  *  *  R  R  G  R  D  *  V  *  R  G  R  R  R  G  G  N  G  R  G  R  R  R  G  G  R  R  G  G  G  R  R  R  R  G  G  G  R  G  G  K  W  K  *  W  S  W  *  R  K  G  V  R  G  C  K  N  E  S  *  C  R  C  *  G  Y  G  E  K  A  C  *  A  P  R  P  S  S  S  W  F  R  S  V  H  R  W  Y  Y  S  *  Y  I  *  G  R  C  E  G  I  L  *  D  N  W  G  S  Y  R   : G  K  N  N  E  R  E  G  L  N  S  E  Q  R  I  C  I  C  Y  L  *  K  Q  G  I  G  N  Q  G  Y  *  R  A  Q  Q  H  *  T  E   : G  K  K  G  Q  M  F  S  S  S  S  *  T  *  V  I  H  W  *  C  S  *  I  L  G  R  G  R  Y  E  D  G  C  N  K  C  R  A  W  G  Y  Y  Y  *  V  S  E   : G  S  S  E  F  R  *  K  S  W  I  R  F  Y  R  V  L  Q  S  C  M  C  R  V  F  *  T  R  D  V  K  F  R  F  *  A  *  *  *  C  T  N  C  *  L  G  R  S  Q  K  C  *  N  C  F  F  T   : G  *  G  S  V  C  E  E  L  A  P  T  H  *  P  R  Q  A  K  R  V  V  *  T  S  W  E  N  Y  K  S  S  S  S  S  S  *  T  R  A  R  T  E  Q  I  W  L  C  S  L  C  *  *  V  K  C  Y  E  G  P  E  E  H  *  K  I  *  D  R  W :   E  N  S  G  V  F  T  C  K  A  S  G  R  S  K  I  F  R  R  I  K  L  T  K  G  S  H  S  S  N  L  P  S  S  Y  W  I  W  H  D  G  S  P  L  W  C  S  R  C  R  F  W  C  R  I  W  W  S  R  C  S  P   : T  N  G  L  W  K  R  S  Y  T  W  W  F  G  N  D  A  D  A  F  T  *  W  K  D  W  I  C  P  :  A  T  T  R  S  Y  A  F  S  S  S  N  I  T  R  W  T  *  W  R  Q  F  K  *  R  K  A  G  *  Q  W  W  T  R  A  S  P  L  Q  P  I  L  G  V  N  E  R  H  *  C  Y  K  A  Q  C  L  L  S  V  *  Q  Y  L  T  D  V  S  V  A  C  L  K  N  R  L  S  S  L  L  S  S  T  S  L  F  F  F   </first_frame>
            <second_frame>  P  Q  S  E  R  E  R  E  E  I  Y  F  Q  R  N  *  N  *  L  S  I  I  A  F  A  S  I  V  E  E  G  K  R  V  L  N  F  Y  L  R  :  S  C  S  A  R  L  S  S  *  K  Y  K  M  P  R  T  R  A  S  A  A  A  I  K  S  E  P  E  K  P  V  E  T  E  E  H  V  D  F  E  G  D  N  E  E  E  E  E  I  E  Y  E  E  V  E  E  E  V  E  M  E  E  E  E  E  E  E  V  E  E  E  V  E  E  E  E  E  E  E  E  E  E  E  N  G  S  D  G  A  G  E  G  K  G  S  E  D  V  K  M  K  V  D  V  D  A  E  D  M  E  K  K  H  A  E  L  L  A  L  P  P  H  G  S  E  V  Y  I  G  G  I  T  H  D  I  S  E  A  D  V  R  E  F  C  E  T  I  G  E  V  T  E  :  V  R  I  M  K  G  K  D  S  T  Q  N  K  G  Y  A  F  V  T  Y  R  N  K  E  L  A  T  K  A  I  K  E  L  N  N  T  E  L  K  :  G  K  R  V  K  C  S  P  A  Q  A  K  H  K  L  F  I  G  N  V  P  R  S  W  G  E  E  D  M  R  T  A  V  T  N  V  G  P  G  V  I  T  I  E  L  V  K  :  D  P  L  N  S  G  K  N  R  G  F  A  F  I  E  Y  Y  N  H  A  C  A  E  Y  S  R  Q  E  M  S  N  S  D  F  K  L  D  D  N  A  P  T  V  S  W  A  D  P  K  N  A  E  T  A  S  S  Q  :  V  K  A  V  Y  V  K  N  L  P  Q  H  I  N  Q  D  K  L  R  E  L  F  E  H  H  G  K  I  T  K  V  V  L  P  P  A  K  P  G  Q  E  Q  S  R  Y  G  F  V  H  F  A  D  R  S  S  A  M  R  A  L  K  N  T  E  K  Y  E  I  D   : G  K  I  L  E  C  S  L  A  K  P  Q  V  D  Q  K  S  S  G  G  S  S  S  Q  K  G  A  T  L  P  I  Y  P  P  R  I  G  Y  G  M  M  G  A  P  Y  G  A  L  G  A  G  F  G  A  G  F  G  G  P  G  V  A  Q  :  P  M  V  Y  G  R  G  A  T  P  G  G  L  A  M  M  P  M  L  L  P  D  G  R  I  G  Y  V  L :   Q  Q  P  G  V  M  H  S  P  P  P  T  S  R  G  G  R  S  G  G  S  S  S  D  G  R  R  G  D  S  G  G  R  G  R  P  R  Y  N  P  Y  *  V  *  M  N  A  I  D  V  I  K  H  N  V  C  C  Q  F  D  N  I  *  L  M  Y  L  *  P  V  *  R  I  D  S  H  L  Y  S  L  R  Q  V  F  F  F  F  </second_frame>
            <third_frame>   H  K  A  R  E  R  E  K  K  F  T  F  R  E  T  K  I  S  C  R  L  S  L  L  L  Q  *  L  K  K  E  K  G  F  S  I  S  I  S  G :   V  A  A  P  D  Y  L  P  R  N  I  R  C  R  E  Q  G  P  V  L  Q  L  L  N  L  N  P  R  N  L  L  R  L  K  S  M  L  T  L  K  V  I  M  K  K  R  K  R  L  S  M  K  R  *  K  K  R  W  K  W  K  R  K  K  K  R  R  S  K  R  R  W  K  K  K  K  R  R  R  K  R  R  K  M  E  V  M  E  L  V  K  E  R  G  Q  R  M  *  K  *  K  L  M  *  M  L  R  I  W  R  K  S  M  L  S  S  S  P  F  L  L  M  V  Q  K  C  T  *  V  V  L  L  M  I  Y  L  R  Q  M  *  G  N  F  V  R  Q  L  G  K  L  Q  R :   *  E  *  *  K  G  R  T  Q  L  R  T  K  D  M  H  L  L  P  I  E  T  R  N  W  Q  P  R  L  L  K  S  S  T  T  L  N  *  R :   E  K  G  S  N  V  L  Q  L  K  L  N  I  S  Y  S  L  V  M  F  L  D  P  G  A  R  K  I  *  G  R  L  *  Q  M  *  G  L  G  L  L  L  L  S  *  *  R :   I  L  *  I  P  V  K  I  V  D  S  L  L  *  S  I  T  I  M  H  V  Q  S  I  L  D  K  R  C  Q  I  Q  I  L  S  L  M  I  M  H  Q  L  L  A  G  Q  I  P  K  M  L  K  L  L  L  H  R :   L  R  Q  C  M  *  R  T  C  P  N  T  L  T  K  T  S  *  E  S  C  L  N  I  M  G  K  L  Q  K  *  F  F  L  Q  L  N  Q  G  K  N  R  A  D  M  A  L  F  T  L  L  I  G  Q  V  L  *  G  P  *  R  T  L  K  N  M  R  *  M  :  G  K  F  W  S  V  H  L  Q  S  L  R  *  I  K  N  L  Q  E  D  Q  A  H  K  R  E  P  L  F  Q  F  T  L  L  V  L  D  M  A  *  W  E  P  L  M  V  L  *  V  Q  V  L  V  Q  D  L  V  V  Q  V  *  P  N :   Q  W  F  M  E  E  E  L  H  L  V  V  W  Q  *  C  R  C  F  Y  L  M  E  G  L  D  M  S   : C  N  N  Q  E  L  C  I  L  L  L  Q  H  H  E  V  D  V  V  E  A  V  Q  V  T  E  G  G  V  T  V  V  D  E  G  V  P  V  T  T  H  T  R  C  K  *  T  P  L  M  L  *  S  T  M  F  A  V  S  L  T  I  F  D  *  C  I  C  S  L  F  K  E  *  T  L  I  S  T  L  F  D  K  S  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33764" stop="33336"/>
                    <exon start="33256" stop="33140"/>
                    <exon start="32978" stop="32838"/>
                    <exon start="32614" stop="32444"/>
                    <exon start="31964" stop="31757"/>
                    <exon start="31661" stop="31474"/>
                    <exon start="30264" stop="30179"/>
                    <exon start="29827" stop="29701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYKMPRTRASAAAIKSEPEKPVETEEHVDFEGDNEEEEEIEYEEVEEEVEMEEEEEEEVEEEVEEEEEEEEEEENGSDGAGEGKGSEDVKMKVDVDAEDMEKKHAELLALPPHGSEVYIGGITHDISEADVREFCETIGEVTEVRIMKGKDSTQNKGYAFVTYRNKELATKAIKELNNTELKGKRVKCSPAQAKHKLFIGNVPRSWGEEDMRTAVTNVGPGVITIELVKDPLNSGKNRGFAFIEYYNHACAEYSRQEMSNSDFKLDDNAPTVSWADPKNAETASSQVKAVYVKNLPQHINQDKLRELFEHHGKITKVVLPPAKPGQEQSRYGFVHFADRSSAMRALKNTEKYEIDGKILECSLAKPQVDQKSSGGSSSQKGATLPIYPPRIGYGMMGAPYGALGAGFGAGFGGPGVAQPMVYGRGATPGGLAMMPMLLPDGRIGYVLQQPGVMHSPPPTSRGGRSGGSSSDGRRGDSGGRGRPRYNPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36939" e_stop="36746"/>
            <exon e_start="34367" e_stop="33870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.931" e_score="0.826"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.826">
            <gDNA_exon_boundary e_start="36939" e_stop="36746" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.931">
            <gDNA_intron_boundary i_start="36745" i_stop="34368" i_length="2378"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="34367" e_stop="33870" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36939" stop="36746"/>
              <exon start="34367" stop="33897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36929" stop="36746"/>
              <exon start="34367" stop="33870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACAATAGCAAAAAAATAAAAATAAAATCCCCAAATCAAAACCCTAACCAATCTAGGGTTTATATAATACCCCCACAAAGCGAGAGAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTCGATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAGG : GGAGGTCTCACTTACAGAATGGGACATGTATTTTGGAACTGGAATTATGTTTTATGGGGAGGGGTCTGGTGGGATCTAAACCTTGATGAACATCCCATTTAAGCATTCTATTTTCCCTGCTATTGCCTGGGGATAGATTAAGCCTTTCATAATCTCCTCTCCTCTCTTTTTCTTTCCTTGTATTCTTTTATTTTTCTTTCTTTTCCTTGTTCCATTGTTATGAATGCATTGGTCCTAATTATAGTTTAAGCTAAAGGCTGACTTTCCTTCAGAAATCAATCAGTATCTACCTTTTATGGAATTCATTGGTTCATTGTTTTTGCACCTGATGGAGGATATTACCCTCTTGATAGTCATTCAGTATTCTTCTCTTGCCTGTCTTTGTTTGTACTGGTAAAATTTAGTCAGCCTTTTACTGAAAATGGACATTGGAACTCCTTGGCCATTTCTCATGGAACAAGTTCAATTGAGATATTCTTTACTCTGGAAATCCTCTTG</gDNA_template>
            <first_frame> Y  T  I  A  K  K  *  K  *  N  P  Q  I  K  T  L  T  N  L  G  F  I  *  Y  P  H  K  A  R  E  R  E  K  K  F  T  F  R  E  T  K  I  S  C  R  L  S  L  L  L  Q  *  L  K  K  E  K  G  F  S  I  S  I  S  G :   E  V  S  L  T  E  W  D  M  Y  F  G  T  G  I  M  F  Y  G  E  G  S  G  G  I  *  T  L  M  N  I  P  F  K  H  S  I  F  P  A  I  A  W  G  *  I  K  P  F  I  I  S  S  P  L  F  F  F  P  C  I  L  L  F  F  F  L  F  L  V  P  L  L  *  M  H  W  S  *  L  *  F  K  L  K  A  D  F  P  S  E  I  N  Q  Y  L  P  F  M  E  F  I  G  S  L  F  L  H  L  M  E  D  I  T  L  L  I  V  I  Q  Y  S  S  L  A  C  L  C  L  Y  W  *  N  L  V  S  L  L  L  K  M  D  I  G  T  P  W  P  F  L  M  E  Q  V  Q  L  R  Y  S  L  L  W  K  S  S   </first_frame>
            <second_frame>  I  Q  *  Q  K  N  K  N  K  I  P  K  S  K  P  *  P  I  *  G  L  Y  N  T  P  T  K  R  E  R  E  R  R  N  L  L  S  E  K  L  K  L  A  V  D  Y  R  F  C  F  N  S  *  R  R  K  K  G  S  Q  F  L  S  Q   : G  R  S  H  L  Q  N  G  T  C  I  L  E  L  E  L  C  F  M  G  R  G  L  V  G  S  K  P  *  *  T  S  H  L  S  I  L  F  S  L  L  L  P  G  D  R  L  S  L  S  *  S  P  L  L  S  F  S  F  L  V  F  F  Y  F  S  F  F  S  L  F  H  C  Y  E  C  I  G  P  N  Y  S  L  S  *  R  L  T  F  L  Q  K  S  I  S  I  Y  L  L  W  N  S  L  V  H  C  F  C  T  *  W  R  I  L  P  S  *  *  S  F  S  I  L  L  L  P  V  F  V  C  T  G  K  I  *  S  A  F  Y  *  K  W  T  L  E  L  L  G  H  F  S  W  N  K  F  N  *  D  I  L  Y  S  G  N  P  L  </second_frame>
            <third_frame>   Y  N  S  K  K  I  K  I  K  S  P  N  Q  N  P  N  Q  S  R  V  Y  I  I  P  P  Q  S  E  R  E  R  E  E  I  Y  F  Q  R  N  *  N  *  L  S  I  I  A  F  A  S  I  V  E  E  G  K  R  V  L  N  F  Y  L  R  :  G  G  L  T  Y  R  M  G  H  V  F  W  N  W  N  Y  V  L  W  G  G  V  W  W  D  L  N  L  D  E  H  P  I  *  A  F  Y  F  P  C  Y  C  L  G  I  D  *  A  F  H  N  L  L  S  S  L  F  L  S  L  Y  S  F  I  F  L  S  F  P  C  S  I  V  M  N  A  L  V  L  I  I  V  *  A  K  G  *  L  S  F  R  N  Q  S  V  S  T  F  Y  G  I  H  W  F  I  V  F  A  P  D  G  G  Y  Y  P  L  D  S  H  S  V  F  F  S  C  L  S  L  F  V  L  V  K  F  S  Q  P  F  T  E  N  G  H  W  N  S  L  A  I  S  H  G  T  S  S  I  E  I  F  F  T  L  E  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34106" stop="33870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFRNQSVSTFYGIHWFIVFAPDGGYYPLDSHSVFFSCLSLFVLVKFSQPFTENGHWNSLAISHGTSSIEIFFTLEILL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="40136" PGL_stop="43917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40136" e_stop="40301"/>
            <exon e_start="41255" e_stop="41436"/>
            <exon e_start="41767" e_stop="41845"/>
            <exon e_start="42038" e_stop="42121"/>
            <exon e_start="42631" e_stop="43216"/>
            <exon e_start="43885" e_stop="43917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.427" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.606"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40136" e_stop="40301" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.427" acc_prob="0.859">
            <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41255" e_stop="41436" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.817">
            <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41767" e_stop="41845" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42038" e_stop="42121" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="42631" e_stop="43216" e_length="586"/>
          </exon>
          <intron i_serial="5" don_prob="0.790" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43217" i_stop="43884" i_length="668"/>
          </intron>
          <exon e_serial="6" e_score="0.606">
            <gDNA_exon_boundary e_start="43885" e_stop="43917" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40137" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40137" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40145" stop="40301"/>
              <exon start="41255" stop="41368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40169" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40169" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40202" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40205" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40228" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41275" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="43071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42053" stop="42121"/>
              <exon start="42631" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42056" stop="42121"/>
              <exon start="42631" stop="43113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607727" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42665" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42774" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42799" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="43216"/>
              <exon start="43885" stop="43917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42893" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42895" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG : GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA : CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG : GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG : CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT : TTTAAAAAATATAACAAGATAATTGACTTGGAC</gDNA_template>
            <first_frame> V  F  G  A  L  N  Q  N  S  K  K  F  Y  S  S  V  H  F  F  H  P  H  R  A  A  T  V  G  D  Q  Q  N  S  G  A  A  T  V  G  D  H  Q  G  S  G  V  E  T  V  G  N  Q  K  G  S   : G  A  V  L  A  A  I  F  K  C  S  Y  *  I  Y  T  I  I  M  D  A  P  N  E  L  S  Y  K  P  P  S  E  F  E  E  V  K  K  D  S  L  V  N  L  N  I  S  D  S  T  E  L  W  L  I  Q  W  P  F  N  Q  :  H  P  G  L  D  G  Q  E  V  S  L  K  L  H  H  D  G  H  I  G  S  F  E  D  S  S   : G  K  S  Y  E  V  V  S  C  R  A  Q  D  P  D  A  L  V  F  L  S  S  D  S  E  P  K  I   : A  G  K  I  S  R  R  V  S  L  V  H  Y  P  E  P  S  E  L  K  Q  N  S  I  N  L  K  Q  M  M  A  Q  R  S  S  G  T  T  L  T  N  S  S  R  R  F  A  T  P  S  Q  S  T  R  T  R  S  I  M  R  S  E  S  S  S  K  S  T  K  R  K  H  S  D  G  G  P  A  K  S  N  N  Q  S  V  Q  D  S  G  K  S  G  R  S  A  L  T  S  S  G  S  F  D  H  S  Q  D  Q  K  S  K  K  K  R  K  I  D  G  *  S  A  S  S  *  V  F  *  I  E  F  F  L  V  K  E  S  L  S  S  C  A  S  T  N  *  A  L  *  P  F  S  H  E  L  E  H  V  L  I  F  S  L  I  L  L  L  E  Q  V  C  E  V  F  A  P  *  L  V  C  L  V  N  P  P  N  D  G  T  N  I  *  S  K  Y  Q  I :   L  K  N  I  T  R  *  L  T  W   </first_frame>
            <second_frame>  Y  L  V  P  *  I  K  I  Q  K  N  S  I  H  R  F  T  F  F  T  L  T  A  Q  L  P  S  A  T  N  R  T  A  A  Q  P  P  S  A  T  I  R  A  A  A  *  K  P  S  A  T  R  R  A  A  :  E  L  F  W  L  P  F  S  S  A  L  I  E  Y  I  P  S  L  W  M  L  R  M  N  *  A  T  N  H  H  Q  N  L  R  R  S  K  R  I  H  L  S  I  L  T  F  Q  T  Q  L  S  S  G  L  Y  S  G  P  L  I  N :   I  Q  V  L  M  G  K  K  F  H  *  S  S  I  M  M  G  I  S  A  V  L  R  I  H  L  :  V  N  H  M  R  W  S  V  V  E  R  R  T  P  M  R  W  S  F  Y  H  L  I  L  S  Q  K  L  :  L  A  K  F  R  G  V  F  P  L  S  I  I  R  N  Q  V  S  L  N  R  T  A  *  T  *  S  R  *  W  L  R  D  R  L  V  L  H  *  P  I  H  L  V  A  L  Q  L  L  V  K  V  L  G  H  G  V  L  C  D  R  R  V  H  P  N  L  P  R  E  N  T  V  M  A  A  L  Q  N  P  I  T  N  L  F  K  I  Q  A  K  V  V  V  V  H  *  P  L  Q  D  P  S  I  T  L  K  I  K  N  Q  R  R  S  G  K  L  M  V  E  V  L  P  L  K  C  S  E  S  N  S  F  W  L  K  N  L  F  L  V  A  L  V  Q  I  E  R  F  N  H  S  A  M  N  S  N  T  S  L  F  S  L  L  Y  Y  F  *  N  K  C  V  R  F  L  R  H  S  L  C  A  L  L  I  P  P  M  M  G  P  I  F  N  L  S  I  K   : F  *  K  I  *  Q  D  N  *  L  G  </second_frame>
            <third_frame>   I  W  C  P  K  S  K  F  K  K  I  L  F  I  G  S  L  F  S  P  S  P  R  S  Y  R  R  R  P  T  E  Q  R  R  S  H  R  R  R  P  S  G  Q  R  R  R  N  R  R  Q  P  E  G  Q  R :   S  C  F  G  C  H  F  Q  V  L  L  L  N  I  Y  H  H  Y  G  C  S  E  *  T  E  L  Q  T  T  I  R  I  *  G  G  Q  K  G  F  T  C  Q  S  *  H  F  R  L  N  *  A  L  A  Y  T  V  A  L  *  S   : T  S  R  S  *  W  A  R  S  F  I  E  A  P  S  *  W  A  Y  R  Q  F  *  G  F  I  W :   *  I  I  *  G  G  Q  L  *  S  A  G  P  R  C  V  G  L  S  I  I  *  F  *  A  K  N  C :   W  Q  N  F  A  A  C  F  P  C  P  L  S  G  T  K  *  A  *  T  E  Q  H  K  L  E  A  D  D  G  S  E  I  V  W  Y  Y  I  D  Q  F  I  S  S  L  C  N  S  *  S  K  Y  *  D  T  E  Y  Y  A  I  G  E  F  I  Q  I  Y  Q  E  K  T  Q  *  W  R  P  C  K  I  Q  *  P  I  C  S  R  F  R  Q  K  W  S  *  C  I  N  L  F  R  I  L  R  S  L  S  R  S  K  I  K  E  E  A  E  N  *  W  L  K  C  F  L  L  S  V  L  N  R  I  L  F  G  *  R  I  S  F  *  L  R  *  Y  K  L  S  A  L  T  I  Q  P  *  T  R  T  R  P  Y  F  L  S  Y  I  T  S  R  T  S  V  *  G  F  C  A  I  A  C  V  P  C  *  S  P  Q  *  W  D  Q  Y  L  I  *  V  S  N  :  F  K  K  Y  N  K  I  I  D  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41293" stop="41436"/>
                    <exon start="41767" stop="41845"/>
                    <exon start="42038" stop="42121"/>
                    <exon start="42631" stop="42986"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYTIIMDAPNELSYKPPSEFEEVKKDSLVNLNISDSTELWLIQWPFNQHPGLDGQEVSLKLHHDGHIGSFEDSSGKSYEVVSCRAQDPDALVFLSSDSEPKIAGKISRRVSLVHYPEPSELKQNSINLKQMMAQRSSGTTLTNSSRRFATPSQSTRTRSIMRSESSSKSTKRKHSDGGPAKSNNQSVQDSGKSGRSALTSSGSFDHSQDQKSKKKRKIDG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40138" stop="40301"/>
                    <exon start="41255" stop="41324"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWCPKSKFKKILFIGSLFSPSPRSYRRRPTEQRRSHRRRPSGQRRRNRRQPEGQRSCFGCHFQVLLLNIYHHYGCSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40136" e_stop="40301"/>
            <exon e_start="41255" e_stop="41436"/>
            <exon e_start="41767" e_stop="41845"/>
            <exon e_start="42038" e_stop="42121"/>
            <exon e_start="42631" e_stop="43242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.427" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40136" e_stop="40301" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.427" acc_prob="0.859">
            <gDNA_intron_boundary i_start="40302" i_stop="41254" i_length="953"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41255" e_stop="41436" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.817">
            <gDNA_intron_boundary i_start="41437" i_stop="41766" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41767" e_stop="41845" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41846" i_stop="42037" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42038" e_stop="42121" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42122" i_stop="42630" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="42631" e_stop="43242" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40136" stop="40301"/>
              <exon start="41255" stop="41424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40137" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40137" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40145" stop="40301"/>
              <exon start="41255" stop="41368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40169" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40169" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40202" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40205" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40209" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40228" stop="40301"/>
              <exon start="41255" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41275" stop="41436"/>
              <exon start="41767" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="43071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="41845"/>
              <exon start="42038" stop="42121"/>
              <exon start="42631" stop="42980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42053" stop="42121"/>
              <exon start="42631" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42056" stop="42121"/>
              <exon start="42631" stop="43113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607727" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42665" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42774" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42799" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42893" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42895" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42945" stop="43242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTGGTGCCCTAAATCAAAATTCAAAAAAATTCTATTCATCGGTTCACTTTTTTCACCCTCACCGCGCAGCTACCGTCGGCGACCAACAGAACAGCGGCGCAGCCACCGTCGGCGACCATCAGGGCAGCGGCGTAGAAACCGTCGGCAACCAGAAGGGCAGCG : GAGCTGTTTTGGCTGCCATTTTCAAGTGCTCTTATTGAATATATACCATCATTATGGATGCTCCGAATGAACTGAGCTACAAACCACCATCAGAATTTGAGGAGGTCAAAAAGGATTCACTTGTCAATCTTAACATTTCAGACTCAACTGAGCTCTGGCTTATACAGTGGCCCTTTAATCAA : CATCCAGGTCTTGATGGGCAAGAAGTTTCATTGAAGCTCCATCATGATGGGCATATCGGCAGTTTTGAGGATTCATCTG : GTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTG : CTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAATGTTATATACCTTTGTTTTAAAATTGT</gDNA_template>
            <first_frame> V  F  G  A  L  N  Q  N  S  K  K  F  Y  S  S  V  H  F  F  H  P  H  R  A  A  T  V  G  D  Q  Q  N  S  G  A  A  T  V  G  D  H  Q  G  S  G  V  E  T  V  G  N  Q  K  G  S   : G  A  V  L  A  A  I  F  K  C  S  Y  *  I  Y  T  I  I  M  D  A  P  N  E  L  S  Y  K  P  P  S  E  F  E  E  V  K  K  D  S  L  V  N  L  N  I  S  D  S  T  E  L  W  L  I  Q  W  P  F  N  Q  :  H  P  G  L  D  G  Q  E  V  S  L  K  L  H  H  D  G  H  I  G  S  F  E  D  S  S   : G  K  S  Y  E  V  V  S  C  R  A  Q  D  P  D  A  L  V  F  L  S  S  D  S  E  P  K  I   : A  G  K  I  S  R  R  V  S  L  V  H  Y  P  E  P  S  E  L  K  Q  N  S  I  N  L  K  Q  M  M  A  Q  R  S  S  G  T  T  L  T  N  S  S  R  R  F  A  T  P  S  Q  S  T  R  T  R  S  I  M  R  S  E  S  S  S  K  S  T  K  R  K  H  S  D  G  G  P  A  K  S  N  N  Q  S  V  Q  D  S  G  K  S  G  R  S  A  L  T  S  S  G  S  F  D  H  S  Q  D  Q  K  S  K  K  K  R  K  I  D  G  *  S  A  S  S  *  V  F  *  I  E  F  F  L  V  K  E  S  L  S  S  C  A  S  T  N  *  A  L  *  P  F  S  H  E  L  E  H  V  L  I  F  S  L  I  L  L  L  E  Q  V  C  E  V  F  A  P  *  L  V  C  L  V  N  P  P  N  D  G  T  N  I  *  S  K  Y  Q  M  L  Y  T  F  V  L  K  L  </first_frame>
            <second_frame>  Y  L  V  P  *  I  K  I  Q  K  N  S  I  H  R  F  T  F  F  T  L  T  A  Q  L  P  S  A  T  N  R  T  A  A  Q  P  P  S  A  T  I  R  A  A  A  *  K  P  S  A  T  R  R  A  A  :  E  L  F  W  L  P  F  S  S  A  L  I  E  Y  I  P  S  L  W  M  L  R  M  N  *  A  T  N  H  H  Q  N  L  R  R  S  K  R  I  H  L  S  I  L  T  F  Q  T  Q  L  S  S  G  L  Y  S  G  P  L  I  N :   I  Q  V  L  M  G  K  K  F  H  *  S  S  I  M  M  G  I  S  A  V  L  R  I  H  L  :  V  N  H  M  R  W  S  V  V  E  R  R  T  P  M  R  W  S  F  Y  H  L  I  L  S  Q  K  L  :  L  A  K  F  R  G  V  F  P  L  S  I  I  R  N  Q  V  S  L  N  R  T  A  *  T  *  S  R  *  W  L  R  D  R  L  V  L  H  *  P  I  H  L  V  A  L  Q  L  L  V  K  V  L  G  H  G  V  L  C  D  R  R  V  H  P  N  L  P  R  E  N  T  V  M  A  A  L  Q  N  P  I  T  N  L  F  K  I  Q  A  K  V  V  V  V  H  *  P  L  Q  D  P  S  I  T  L  K  I  K  N  Q  R  R  S  G  K  L  M  V  E  V  L  P  L  K  C  S  E  S  N  S  F  W  L  K  N  L  F  L  V  A  L  V  Q  I  E  R  F  N  H  S  A  M  N  S  N  T  S  L  F  S  L  L  Y  Y  F  *  N  K  C  V  R  F  L  R  H  S  L  C  A  L  L  I  P  P  M  M  G  P  I  F  N  L  S  I  K  C  Y  I  P  L  F  *  N  C </second_frame>
            <third_frame>   I  W  C  P  K  S  K  F  K  K  I  L  F  I  G  S  L  F  S  P  S  P  R  S  Y  R  R  R  P  T  E  Q  R  R  S  H  R  R  R  P  S  G  Q  R  R  R  N  R  R  Q  P  E  G  Q  R :   S  C  F  G  C  H  F  Q  V  L  L  L  N  I  Y  H  H  Y  G  C  S  E  *  T  E  L  Q  T  T  I  R  I  *  G  G  Q  K  G  F  T  C  Q  S  *  H  F  R  L  N  *  A  L  A  Y  T  V  A  L  *  S   : T  S  R  S  *  W  A  R  S  F  I  E  A  P  S  *  W  A  Y  R  Q  F  *  G  F  I  W :   *  I  I  *  G  G  Q  L  *  S  A  G  P  R  C  V  G  L  S  I  I  *  F  *  A  K  N  C :   W  Q  N  F  A  A  C  F  P  C  P  L  S  G  T  K  *  A  *  T  E  Q  H  K  L  E  A  D  D  G  S  E  I  V  W  Y  Y  I  D  Q  F  I  S  S  L  C  N  S  *  S  K  Y  *  D  T  E  Y  Y  A  I  G  E  F  I  Q  I  Y  Q  E  K  T  Q  *  W  R  P  C  K  I  Q  *  P  I  C  S  R  F  R  Q  K  W  S  *  C  I  N  L  F  R  I  L  R  S  L  S  R  S  K  I  K  E  E  A  E  N  *  W  L  K  C  F  L  L  S  V  L  N  R  I  L  F  G  *  R  I  S  F  *  L  R  *  Y  K  L  S  A  L  T  I  Q  P  *  T  R  T  R  P  Y  F  L  S  Y  I  T  S  R  T  S  V  *  G  F  C  A  I  A  C  V  P  C  *  S  P  Q  *  W  D  Q  Y  L  I  *  V  S  N  V  I  Y  L  C  F  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41293" stop="41436"/>
                    <exon start="41767" stop="41845"/>
                    <exon start="42038" stop="42121"/>
                    <exon start="42631" stop="42986"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYTIIMDAPNELSYKPPSEFEEVKKDSLVNLNISDSTELWLIQWPFNQHPGLDGQEVSLKLHHDGHIGSFEDSSGKSYEVVSCRAQDPDALVFLSSDSEPKIAGKISRRVSLVHYPEPSELKQNSINLKQMMAQRSSGTTLTNSSRRFATPSQSTRTRSIMRSESSSKSTKRKHSDGGPAKSNNQSVQDSGKSGRSALTSSGSFDHSQDQKSKKKRKIDG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40138" stop="40301"/>
                    <exon start="41255" stop="41324"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWCPKSKFKKILFIGSLFSPSPRSYRRRPTEQRRSHRRRPSGQRRRNRRQPEGQRSCFGCHFQVLLLNIYHHYGCSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41948" e_stop="43216"/>
            <exon e_start="43885" e_stop="43917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.606"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="41948" e_stop="43216" e_length="1269"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43217" i_stop="43884" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="0.606">
            <gDNA_exon_boundary e_start="43885" e_stop="43917" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41948" stop="42684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42665" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42774" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42799" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="43216"/>
              <exon start="43885" stop="43917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42893" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42895" stop="43216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACCTCTAATTTTCATAGCAGGCATTTTAAGATAATGAAAGATTCTTTTAATTTCTTAACGTCTTGCTCAACGATTGCTTTTGTAACAGGTAAATCATATGAGGTGGTCAGTTGTAGAGCGCAGGACCCCGATGCGTTGGTCTTTCTATCATCTGATTCTGAGCCAAAAATTGGTAACTCTTAGTTCCTTTGCATTTTACTGTACACTTGTCTGCTTATTCACTCATGATCTCGACACTCAAAACGTGCAATACTGCAATATCCTTTTGGGTATGTCATTTTTATCTCATATTTTGTGATGTTGGTGTCAAGTCAAAGCTATTCTGTTGACAGTTGAGACGTCGTGCTTCATAATTTTGTTGTACCAACCATTATGTTGTGTACCCACGCACTGTTGTAACATGTGTACTGAAGCTAATGTGACTCAATATCTTTGATGATTTCAATTTAATCTACTATGTCCACATATGACATGCTCGTTTTGTTTGCATATTGAAATTTTATTGCTCTCTCTTAGTTGAGCGGAACTTGCACATAATCCAACTACTAATGCTCTTCTGTTTATATTTTTGGTAGAACTTATTGTTATTCCTTGTGAACCTCTATATGATCCAAATGCTGCTAATTTTCCGTTCAAGCACAAAATTAAGGCGTTTGAGCAGAGTTTTGCATGTTTTGGCAGCTGGCAAAATTTCGCGGCGTGTTTCCCTTGTCCATTATCCGGAACCAAGTGAGCTTAAACAGAACAGCATAAACTTGAAGCAGATGATGGCTCAGAGATCGTCTGGTACTACATTGACCAATTCATCTCGTCGCTTTGCAACTCCTAGTCAAAGTACTAGGACACGGAGTATTATGCGATCGGAGAGTTCATCCAAATCTACCAAGAGAAAACACAGTGATGGCGGCCCTGCAAAATCCAATAACCAATCTGTTCAAGATTCAGGCAAAAGTGGTCGTAGTGCATTAACCTCTTCAGGATCCTTCGATCACTCTCAAGATCAAAAATCAAAGAAGAAGCGGAAAATTGATGGTTGAAGTGCTTCCTCTTAAGTGTTCTGAATCGAATTCTTTTTGGTTAAAGAATCTCTTTCTAGTTGCGCTAGTACAAATTGAGCGCTTTAACCATTCAGCCATGAACTCGAACACGTCCTTATTTTCTCTCTTATATTACTTCTAGAACAAGTGTGTGAGGTTTTTGCGCCATAGCTTGTGTGCCTTGTTAATCCCCCCAATGATGGGACCAATATTTAATCTAAGTATCAAAT : TTTAAAAAATATAACAAGATAATTGACTTGGAC</gDNA_template>
            <first_frame> A  P  L  I  F  I  A  G  I  L  R  *  *  K  I  L  L  I  S  *  R  L  A  Q  R  L  L  L  *  Q  V  N  H  M  R  W  S  V  V  E  R  R  T  P  M  R  W  S  F  Y  H  L  I  L  S  Q  K  L  V  T  L  S  S  F  A  F  Y  C  T  L  V  C  L  F  T  H  D  L  D  T  Q  N  V  Q  Y  C  N  I  L  L  G  M  S  F  L  S  H  I  L  *  C  W  C  Q  V  K  A  I  L  L  T  V  E  T  S  C  F  I  I  L  L  Y  Q  P  L  C  C  V  P  T  H  C  C  N  M  C  T  E  A  N  V  T  Q  Y  L  *  *  F  Q  F  N  L  L  C  P  H  M  T  C  S  F  C  L  H  I  E  I  L  L  L  S  L  S  *  A  E  L  A  H  N  P  T  T  N  A  L  L  F  I  F  L  V  E  L  I  V  I  P  C  E  P  L  Y  D  P  N  A  A  N  F  P  F  K  H  K  I  K  A  F  E  Q  S  F  A  C  F  G  S  W  Q  N  F  A  A  C  F  P  C  P  L  S  G  T  K  *  A  *  T  E  Q  H  K  L  E  A  D  D  G  S  E  I  V  W  Y  Y  I  D  Q  F  I  S  S  L  C  N  S  *  S  K  Y  *  D  T  E  Y  Y  A  I  G  E  F  I  Q  I  Y  Q  E  K  T  Q  *  W  R  P  C  K  I  Q  *  P  I  C  S  R  F  R  Q  K  W  S  *  C  I  N  L  F  R  I  L  R  S  L  S  R  S  K  I  K  E  E  A  E  N  *  W  L  K  C  F  L  L  S  V  L  N  R  I  L  F  G  *  R  I  S  F  *  L  R  *  Y  K  L  S  A  L  T  I  Q  P  *  T  R  T  R  P  Y  F  L  S  Y  I  T  S  R  T  S  V  *  G  F  C  A  I  A  C  V  P  C  *  S  P  Q  *  W  D  Q  Y  L  I  *  V  S  N  :  F  K  K  Y  N  K  I  I  D  L  D </first_frame>
            <second_frame>  H  L  *  F  S  *  Q  A  F  *  D  N  E  R  F  F  *  F  L  N  V  L  L  N  D  C  F  C  N  R  *  I  I  *  G  G  Q  L  *  S  A  G  P  R  C  V  G  L  S  I  I  *  F  *  A  K  N  W  *  L  L  V  P  L  H  F  T  V  H  L  S  A  Y  S  L  M  I  S  T  L  K  T  C  N  T  A  I  S  F  W  V  C  H  F  Y  L  I  F  C  D  V  G  V  K  S  K  L  F  C  *  Q  L  R  R  R  A  S  *  F  C  C  T  N  H  Y  V  V  Y  P  R  T  V  V  T  C  V  L  K  L  M  *  L  N  I  F  D  D  F  N  L  I  Y  Y  V  H  I  *  H  A  R  F  V  C  I  L  K  F  Y  C  S  L  L  V  E  R  N  L  H  I  I  Q  L  L  M  L  F  C  L  Y  F  W  *  N  L  L  L  F  L  V  N  L  Y  M  I  Q  M  L  L  I  F  R  S  S  T  K  L  R  R  L  S  R  V  L  H  V  L  A  A  G  K  I  S  R  R  V  S  L  V  H  Y  P  E  P  S  E  L  K  Q  N  S  I  N  L  K  Q  M  M  A  Q  R  S  S  G  T  T  L  T  N  S  S  R  R  F  A  T  P  S  Q  S  T  R  T  R  S  I  M  R  S  E  S  S  S  K  S  T  K  R  K  H  S  D  G  G  P  A  K  S  N  N  Q  S  V  Q  D  S  G  K  S  G  R  S  A  L  T  S  S  G  S  F  D  H  S  Q  D  Q  K  S  K  K  K  R  K  I  D  G  *  S  A  S  S  *  V  F  *  I  E  F  F  L  V  K  E  S  L  S  S  C  A  S  T  N  *  A  L  *  P  F  S  H  E  L  E  H  V  L  I  F  S  L  I  L  L  L  E  Q  V  C  E  V  F  A  P  *  L  V  C  L  V  N  P  P  N  D  G  T  N  I  *  S  K  Y  Q  I :   L  K  N  I  T  R  *  L  T  W   </second_frame>
            <third_frame>   T  S  N  F  H  S  R  H  F  K  I  M  K  D  S  F  N  F  L  T  S  C  S  T  I  A  F  V  T  G  K  S  Y  E  V  V  S  C  R  A  Q  D  P  D  A  L  V  F  L  S  S  D  S  E  P  K  I  G  N  S  *  F  L  C  I  L  L  Y  T  C  L  L  I  H  S  *  S  R  H  S  K  R  A  I  L  Q  Y  P  F  G  Y  V  I  F  I  S  Y  F  V  M  L  V  S  S  Q  S  Y  S  V  D  S  *  D  V  V  L  H  N  F  V  V  P  T  I  M  L  C  T  H  A  L  L  *  H  V  Y  *  S  *  C  D  S  I  S  L  M  I  S  I  *  S  T  M  S  T  Y  D  M  L  V  L  F  A  Y  *  N  F  I  A  L  S  *  L  S  G  T  C  T  *  S  N  Y  *  C  S  S  V  Y  I  F  G  R  T  Y  C  Y  S  L  *  T  S  I  *  S  K  C  C  *  F  S  V  Q  A  Q  N  *  G  V  *  A  E  F  C  M  F  W  Q  L  A  K  F  R  G  V  F  P  L  S  I  I  R  N  Q  V  S  L  N  R  T  A  *  T  *  S  R  *  W  L  R  D  R  L  V  L  H  *  P  I  H  L  V  A  L  Q  L  L  V  K  V  L  G  H  G  V  L  C  D  R  R  V  H  P  N  L  P  R  E  N  T  V  M  A  A  L  Q  N  P  I  T  N  L  F  K  I  Q  A  K  V  V  V  V  H  *  P  L  Q  D  P  S  I  T  L  K  I  K  N  Q  R  R  S  G  K  L  M  V  E  V  L  P  L  K  C  S  E  S  N  S  F  W  L  K  N  L  F  L  V  A  L  V  Q  I  E  R  F  N  H  S  A  M  N  S  N  T  S  L  F  S  L  L  Y  Y  F  *  N  K  C  V  R  F  L  R  H  S  L  C  A  L  L  I  P  P  M  M  G  P  I  F  N  L  S  I  K   : F  *  K  I  *  Q  D  N  *  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42525" stop="42986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLLFLVNLYMIQMLLIFRSSTKLRRLSRVLHVLAAGKISRRVSLVHYPEPSELKQNSINLKQMMAQRSSGTTLTNSSRRFATPSQSTRTRSIMRSESSSKSTKRKHSDGGPAKSNNQSVQDSGKSGRSALTSSGSFDHSQDQKSKKKRKIDG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42035" stop="42247"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVNHMRWSVVERRTPMRWSFYHLILSQKLVTLSSFAFYCTLVCLFTHDLDTQNVQYCNILLGMSFLSHIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="48315" PGL_stop="48940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48315" e_stop="48940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="48315" e_stop="48940" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48315" stop="48940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACTTTCATCTTCTTCAAAAACTCAACAAAAAATGCAAATTCTTGTCTGAAAAATTCACCCCCACCCCCCCAAATCAATGGGTTGTGTACCATCAAAACTCTTCAACAAAAAAAATTTGAGAAAAAATGGTGATGATTACCCTGACCATGTTGTTTCTTTAACTTCAAGTACTTATGGTGTGTTGAATCTTGAAAAAGATTCAAACTTTGTGCGAAACCCGCCTTTATCGATTAAGGAATGTGTTAAAGAGATCAAGAAATCACCACCCCATGAAGAATCTCATGAAGTTATTAATACTTGGGAGTTAATGGAAGATCTTGATGAAGAAGTTGTTGTAAAAAATTCCAAGATTAGTCCAAAATCTCGGGTTTTTCTTCGTGGATTTGGCGATATTGATGCTCGTAGTCCTTTGAAGTTCTTGAATCAAATGAGCTCTCCGCGTAAATTCAAGAAATTGAGTGGAAAGGAGAATCGAGGAAGGGGTAATGAAACTAATTTGGTTGATTTCAGCCCCAAAAATGTGTTGAAGGATTGTAAATTGATGCAGAGTCCATGGAAAATGCCACCAAGATTGAATTTTTCGAAGAAGGGGAGTCCGAATGAGGTGAAATGTGATAGTTTGA</gDNA_template>
            <first_frame> P  T  F  I  F  F  K  N  S  T  K  N  A  N  S  C  L  K  N  S  P  P  P  P  Q  I  N  G  L  C  T  I  K  T  L  Q  Q  K  K  F  E  K  K  W  *  *  L  P  *  P  C  C  F  F  N  F  K  Y  L  W  C  V  E  S  *  K  R  F  K  L  C  A  K  P  A  F  I  D  *  G  M  C  *  R  D  Q  E  I  T  T  P  *  R  I  S  *  S  Y  *  Y  L  G  V  N  G  R  S  *  *  R  S  C  C  K  K  F  Q  D  *  S  K  I  S  G  F  S  S  W  I  W  R  Y  *  C  S  *  S  F  E  V  L  E  S  N  E  L  S  A  *  I  Q  E  I  E  W  K  G  E  S  R  K  G  *  *  N  *  F  G  *  F  Q  P  Q  K  C  V  E  G  L  *  I  D  A  E  S  M  E  N  A  T  K  I  E  F  F  E  E  G  E  S  E  *  G  E  M  *  *  F   </first_frame>
            <second_frame>  P  L  S  S  S  S  K  T  Q  Q  K  M  Q  I  L  V  *  K  I  H  P  H  P  P  K  S  M  G  C  V  P  S  K  L  F  N  K  K  N  L  R  K  N  G  D  D  Y  P  D  H  V  V  S  L  T  S  S  T  Y  G  V  L  N  L  E  K  D  S  N  F  V  R  N  P  P  L  S  I  K  E  C  V  K  E  I  K  K  S  P  P  H  E  E  S  H  E  V  I  N  T  W  E  L  M  E  D  L  D  E  E  V  V  V  K  N  S  K  I  S  P  K  S  R  V  F  L  R  G  F  G  D  I  D  A  R  S  P  L  K  F  L  N  Q  M  S  S  P  R  K  F  K  K  L  S  G  K  E  N  R  G  R  G  N  E  T  N  L  V  D  F  S  P  K  N  V  L  K  D  C  K  L  M  Q  S  P  W  K  M  P  P  R  L  N  F  S  K  K  G  S  P  N  E  V  K  C  D  S  L  </second_frame>
            <third_frame>   H  F  H  L  L  Q  K  L  N  K  K  C  K  F  L  S  E  K  F  T  P  T  P  P  N  Q  W  V  V  Y  H  Q  N  S  S  T  K  K  I  *  E  K  M  V  M  I  T  L  T  M  L  F  L  *  L  Q  V  L  M  V  C  *  I  L  K  K  I  Q  T  L  C  E  T  R  L  Y  R  L  R  N  V  L  K  R  S  R  N  H  H  P  M  K  N  L  M  K  L  L  I  L  G  S  *  W  K  I  L  M  K  K  L  L  *  K  I  P  R  L  V  Q  N  L  G  F  F  F  V  D  L  A  I  L  M  L  V  V  L  *  S  S  *  I  K  *  A  L  R  V  N  S  R  N  *  V  E  R  R  I  E  E  G  V  M  K  L  I  W  L  I  S  A  P  K  M  C  *  R  I  V  N  *  C  R  V  H  G  K  C  H  Q  D  *  I  F  R  R  R  G  V  R  M  R  *  N  V  I  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48367" stop="48939"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIHPHPPKSMGCVPSKLFNKKNLRKNGDDYPDHVVSLTSSTYGVLNLEKDSNFVRNPPLSIKECVKEIKKSPPHEESHEVINTWELMEDLDEEVVVKNSKISPKSRVFLRGFGDIDARSPLKFLNQMSSPRKFKKLSGKENRGRGNETNLVDFSPKNVLKDCKLMQSPWKMPPRLNFSKKGSPNEVKCDSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="48955" PGL_stop="49597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48955" e_stop="49597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48955" e_stop="49597" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48955" stop="49597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGTTTCGCGGAGGAGAAGGAGTTTAAGTCCGTTGTTTGATCCACAGCTCGTGGAAGCTTTCGAGAAAGAGATGTCTGCAGAAGAAGAACAGATCAAGAAAATGGTGTCTGCTACGCCAATTTCTCGAAAAGCTAGGCATTCACAAGAAGCAGAGACAATGCTTGAGTTATTTGAGAAAAAATGCCCACCAGAAGGTGAAAATGCAGTTGTAATCTATACAACTACATTGAGGGGTATTAGAAAGACATTTGAGGATTGTAATACTGCTAGGGCTATACTCGAATCGAATGATGTTCGTGTGATTGAACGTGATATATCGATGGATTCGGGGTATAAGGAAGAACTAAGAGGACTAATGGGGACAAAAGAGGTGAAAGTTCCTTTAGTGTTTGTAAAAGGGAGGTTAATTGGTGGAGCTGATGAAATGTTGAAGTTGGAAGAGGAGGGTAAATTGGGAATTTTACTCGACGGGATCCCGAGGGCAGCTGCCACGTGTGATGGCTGCGCGGGGATCCGGTTCGTGATGTGTATGGACTGCAATGGGAGTAGAAAATTGTTGGCCAAGGATGGAAAGAGTACTGTGAAATGTGGAGACTGCAATGAGAATGGTTTGATTCAGTGTCCAATTTGTTGTTAACTAT</gDNA_template>
            <first_frame> L  V  S  R  R  R  R  S  L  S  P  L  F  D  P  Q  L  V  E  A  F  E  K  E  M  S  A  E  E  E  Q  I  K  K  M  V  S  A  T  P  I  S  R  K  A  R  H  S  Q  E  A  E  T  M  L  E  L  F  E  K  K  C  P  P  E  G  E  N  A  V  V  I  Y  T  T  T  L  R  G  I  R  K  T  F  E  D  C  N  T  A  R  A  I  L  E  S  N  D  V  R  V  I  E  R  D  I  S  M  D  S  G  Y  K  E  E  L  R  G  L  M  G  T  K  E  V  K  V  P  L  V  F  V  K  G  R  L  I  G  G  A  D  E  M  L  K  L  E  E  E  G  K  L  G  I  L  L  D  G  I  P  R  A  A  A  T  C  D  G  C  A  G  I  R  F  V  M  C  M  D  C  N  G  S  R  K  L  L  A  K  D  G  K  S  T  V  K  C  G  D  C  N  E  N  G  L  I  Q  C  P  I  C  C  *  L  </first_frame>
            <second_frame>  W  F  R  G  G  E  G  V  *  V  R  C  L  I  H  S  S  W  K  L  S  R  K  R  C  L  Q  K  K  N  R  S  R  K  W  C  L  L  R  Q  F  L  E  K  L  G  I  H  K  K  Q  R  Q  C  L  S  Y  L  R  K  N  A  H  Q  K  V  K  M  Q  L  *  S  I  Q  L  H  *  G  V  L  E  R  H  L  R  I  V  I  L  L  G  L  Y  S  N  R  M  M  F  V  *  L  N  V  I  Y  R  W  I  R  G  I  R  K  N  *  E  D  *  W  G  Q  K  R  *  K  F  L  *  C  L  *  K  G  G  *  L  V  E  L  M  K  C  *  S  W  K  R  R  V  N  W  E  F  Y  S  T  G  S  R  G  Q  L  P  R  V  M  A  A  R  G  S  G  S  *  C  V  W  T  A  M  G  V  E  N  C  W  P  R  M  E  R  V  L  *  N  V  E  T  A  M  R  M  V  *  F  S  V  Q  F  V  V  N  Y </second_frame>
            <third_frame>   G  F  A  E  E  K  E  F  K  S  V  V  *  S  T  A  R  G  S  F  R  E  R  D  V  C  R  R  R  T  D  Q  E  N  G  V  C  Y  A  N  F  S  K  S  *  A  F  T  R  S  R  D  N  A  *  V  I  *  E  K  M  P  T  R  R  *  K  C  S  C  N  L  Y  N  Y  I  E  G  Y  *  K  D  I  *  G  L  *  Y  C  *  G  Y  T  R  I  E  *  C  S  C  D  *  T  *  Y  I  D  G  F  G  V  *  G  R  T  K  R  T  N  G  D  K  R  G  E  S  S  F  S  V  C  K  R  E  V  N  W  W  S  *  *  N  V  E  V  G  R  G  G  *  I  G  N  F  T  R  R  D  P  E  G  S  C  H  V  *  W  L  R  G  D  P  V  R  D  V  Y  G  L  Q  W  E  *  K  I  V  G  Q  G  W  K  E  Y  C  E  M  W  R  L  Q  *  E  W  F  D  S  V  S  N  L  L  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48955" stop="49593"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRRRRSLSPLFDPQLVEAFEKEMSAEEEQIKKMVSATPISRKARHSQEAETMLELFEKKCPPEGENAVVIYTTTLRGIRKTFEDCNTARAILESNDVRVIERDISMDSGYKEELRGLMGTKEVKVPLVFVKGRLIGGADEMLKLEEEGKLGILLDGIPRAAATCDGCAGIRFVMCMDCNGSRKLLAKDGKSTVKCGDCNENGLIQCPICC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="54404" PGL_stop="59163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54404" e_stop="54520"/>
            <exon e_start="56560" e_stop="57675"/>
            <exon e_start="58851" e_stop="59163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.999"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54404" e_stop="54520" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54521" i_stop="56559" i_length="2039"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="56560" e_stop="57675" e_length="1116"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57676" i_stop="58850" i_length="1175"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="58851" e_stop="59163" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54404" stop="54520"/>
              <exon start="56560" stop="57003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54414" stop="54520"/>
              <exon start="56560" stop="57103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54415" stop="54520"/>
              <exon start="56560" stop="56890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54426" stop="54520"/>
              <exon start="56560" stop="56946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54426" stop="54520"/>
              <exon start="56560" stop="56946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54426" stop="54520"/>
              <exon start="56560" stop="56921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294739" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54426" stop="54520"/>
              <exon start="56560" stop="56921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54426" stop="54520"/>
              <exon start="56560" stop="56787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54427" stop="54520"/>
              <exon start="56560" stop="56946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="54520"/>
              <exon start="56560" stop="57104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="54520"/>
              <exon start="56560" stop="57026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54438" stop="54520"/>
              <exon start="56560" stop="57235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54453" stop="54520"/>
              <exon start="56560" stop="57210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54453" stop="54520"/>
              <exon start="56560" stop="57035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54456" stop="54520"/>
              <exon start="56560" stop="57149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54457" stop="54520"/>
              <exon start="56560" stop="57123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537687" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54457" stop="54520"/>
              <exon start="56560" stop="56911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56567" stop="57397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56658" stop="57060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56888" stop="57359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56919" stop="57675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57229" stop="57675"/>
              <exon start="58851" stop="59162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537854" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57378" stop="57675"/>
              <exon start="58851" stop="59148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57553" stop="57675"/>
              <exon start="58851" stop="59162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57563" stop="57675"/>
              <exon start="58851" stop="59161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265397" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58870" stop="59163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTCTTCGCACACTGAAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC : ATTGGCTGTGACAGCTCCAAATAATGGTGCTGCTTCAAGTGAGGAGCGTGAAGAATCTGATGAGCAAAACTCATTGTTTTGTGTGCCGGTTGATATTCTAGAACAGATTCTCAGCCGGTTAAACTTGAAGGAAAATATCCTTGCTTCTGCTGTTTGCAAGCAATGGCTTGCTGCTGCCATTTCTGTAAGAGTTGCGAATAAACCACCTTGGCTTATGTTTTTCCCGAAATTCGGTGACTTGGTTGAATTCTATGACCCTTCAGTGAGGCAAACTTATTCTGTTGAGTTACCAGAGTTACGTGGCTCAAGGCTTTGTTATGCAAAGGATGGCTGGTTGCTGCTATACAAGCCCAGAACTTTGCGTGTGTTCTTCTTCAATCCTTATACGAAGGAGGTGATCAATTTGCCAGGACTAGAATTAACATACCAGATAGTTGCTTTTTCGGCAGCCCCAACATCCCCTGACTGTATTGTTTTCACAGTTAAGCATGTCAGCCCCACTTTGGTTGCAATTAGCACATGTAAACCAGGAGCAACTGAATGGACAACTGCCAATTACCAAAACCGTTTGCCATTTGTTAGCAGCATTTGGAATAAGTTAGTTTTCTGCAATGGTCTCTTTTATTGTCTGAGTCTTACTGGCTGGTTGGGAGTCTATGATCCAGAAGAACATACTTGGCTTGTTCGTGTGGTTCCACCTCCGAGATGCCCCGAGAACTTTTTCGTCAAAAATTGGTGGAAAGGAAAATTCATGGCAGAGCACGATGGAGATATCTATGTGATATATACTTGCTCTACTGCAAACCCCGTGGTATATAAGTTGGACCAAATTAATAAAATTTGGGTGGAGATGCAAACTTTAGGTGGTTTGACTCTTTTTGCTAGTTTCCTTTCATCCCAAGCAAGGACAGACATTCTTGGTGTGATGAGAAATAGTATTTATTTCTCTAAGGTTCGTTTTTATGGAAGGCGCTGCATATCCTATTCTCTCGATAAAAACAGATACTACCCGCGAAAGCAGTGTTACGATTGGGGAGAACAAGATCCTTTTGAGAGCATTTGGATTGATGCACCGGCGGACCTTTCAGCCTTTACCTGAAAAGATTTGTGACAGAG : GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTATGCTGT</gDNA_template>
            <first_frame> S  V  F  A  H  *  K  K  K  T  Y  T  A  L  L  *  L  R  *  K  R  P  K  L  S  S  C  S  H  G  W  K  K  K  K  K  N  E  V  :  I  G  C  D  S  S  K  *  W  C  C  F  K  *  G  A  *  R  I  *  *  A  K  L  I  V  L  C  A  G  *  Y  S  R  T  D  S  Q  P  V  K  L  E  G  K  Y  P  C  F  C  C  L  Q  A  M  A  C  C  C  H  F  C  K  S  C  E  *  T  T  L  A  Y  V  F  P  E  I  R  *  L  G  *  I  L  *  P  F  S  E  A  N  L  F  C  *  V  T  R  V  T  W  L  K  A  L  L  C  K  G  W  L  V  A  A  I  Q  A  Q  N  F  A  C  V  L  L  Q  S  L  Y  E  G  G  D  Q  F  A  R  T  R  I  N  I  P  D  S  C  F  F  G  S  P  N  I  P  *  L  Y  C  F  H  S  *  A  C  Q  P  H  F  G  C  N  *  H  M  *  T  R  S  N  *  M  D  N  C  Q  L  P  K  P  F  A  I  C  *  Q  H  L  E  *  V  S  F  L  Q  W  S  L  L  L  S  E  S  Y  W  L  V  G  S  L  *  S  R  R  T  Y  L  A  C  S  C  G  S  T  S  E  M  P  R  E  L  F  R  Q  K  L  V  E  R  K  I  H  G  R  A  R  W  R  Y  L  C  D  I  Y  L  L  Y  C  K  P  R  G  I  *  V  G  P  N  *  *  N  L  G  G  D  A  N  F  R  W  F  D  S  F  C  *  F  P  F  I  P  S  K  D  R  H  S  W  C  D  E  K  *  Y  L  F  L  *  G  S  F  L  W  K  A  L  H  I  L  F  S  R  *  K  Q  I  L  P  A  K  A  V  L  R  L  G  R  T  R  S  F  *  E  H  L  D  *  C  T  G  G  P  F  S  L  Y  L  K  R  F  V  T  E  :  G  L  K  Y  K  V  P  L  Q  T  A  S  S  R  A  A  D  V  V  K  *  P  P  C  C  G  K  S  E  S  E  P  M  V  Q  M  Y  Q  *  M  L  S  K  D  L  E  G  M  I  K  D  R  V  L  I  M  S  S  L  N  L  *  Y  F  I  S  C  H  *  T  I  S  F  S  V  D  N  I  L  G  *  W  C  S  *  I  C  *  S  L  I  *  A  D  *  I  R  A  L  G  T  S  M  L  </first_frame>
            <second_frame>  L  S  S  H  T  E  K  K  K  H  I  L  L  C  F  N  L  D  R  N  A  Q  S  *  V  L  A  A  M  A  G  R  K  R  R  K  M  K  S :   L  A  V  T  A  P  N  N  G  A  A  S  S  E  E  R  E  E  S  D  E  Q  N  S  L  F  C  V  P  V  D  I  L  E  Q  I  L  S  R  L  N  L  K  E  N  I  L  A  S  A  V  C  K  Q  W  L  A  A  A  I  S  V  R  V  A  N  K  P  P  W  L  M  F  F  P  K  F  G  D  L  V  E  F  Y  D  P  S  V  R  Q  T  Y  S  V  E  L  P  E  L  R  G  S  R  L  C  Y  A  K  D  G  W  L  L  L  Y  K  P  R  T  L  R  V  F  F  F  N  P  Y  T  K  E  V  I  N  L  P  G  L  E  L  T  Y  Q  I  V  A  F  S  A  A  P  T  S  P  D  C  I  V  F  T  V  K  H  V  S  P  T  L  V  A  I  S  T  C  K  P  G  A  T  E  W  T  T  A  N  Y  Q  N  R  L  P  F  V  S  S  I  W  N  K  L  V  F  C  N  G  L  F  Y  C  L  S  L  T  G  W  L  G  V  Y  D  P  E  E  H  T  W  L  V  R  V  V  P  P  P  R  C  P  E  N  F  F  V  K  N  W  W  K  G  K  F  M  A  E  H  D  G  D  I  Y  V  I  Y  T  C  S  T  A  N  P  V  V  Y  K  L  D  Q  I  N  K  I  W  V  E  M  Q  T  L  G  G  L  T  L  F  A  S  F  L  S  S  Q  A  R  T  D  I  L  G  V  M  R  N  S  I  Y  F  S  K  V  R  F  Y  G  R  R  C  I  S  Y  S  L  D  K  N  R  Y  Y  P  R  K  Q  C  Y  D  W  G  E  Q  D  P  F  E  S  I  W  I  D  A  P  A  D  L  S  A  F  T  *  K  D  L  *  Q  R :   A  S  N  T  R  S  L  F  K  R  L  H  R  E  L  Q  M  *  S  S  S  H  L  A  A  E  K  V  K  A  N  R  W  F  R  C  I  S  K  C  C  Q  K  T  W  K  A  *  *  R  T  G  F  *  S  C  H  L  S  I  Y  S  T  L  *  V  V  I  K  Q  F  P  S  V  *  I  T  F  *  G  N  G  V  V  E  S  V  E  V  *  F  K  L  T  K  *  E  L  *  V  L  L  C  C </second_frame>
            <third_frame>   C  L  R  T  L  K  K  K  N  I  Y  C  F  A  L  T  *  I  E  T  P  K  A  E  F  L  Q  P  W  L  E  E  K  E  E  K  *  S   : H  W  L  *  Q  L  Q  I  M  V  L  L  Q  V  R  S  V  K  N  L  M  S  K  T  H  C  F  V  C  R  L  I  F  *  N  R  F  S  A  G  *  T  *  R  K  I  S  L  L  L  L  F  A  S  N  G  L  L  L  P  F  L  *  E  L  R  I  N  H  L  G  L  C  F  S  R  N  S  V  T  W  L  N  S  M  T  L  Q  *  G  K  L  I  L  L  S  Y  Q  S  Y  V  A  Q  G  F  V  M  Q  R  M  A  G  C  C  Y  T  S  P  E  L  C  V  C  S  S  S  I  L  I  R  R  R  *  S  I  C  Q  D  *  N  *  H  T  R  *  L  L  F  R  Q  P  Q  H  P  L  T  V  L  F  S  Q  L  S  M  S  A  P  L  W  L  Q  L  A  H  V  N  Q  E  Q  L  N  G  Q  L  P  I  T  K  T  V  C  H  L  L  A  A  F  G  I  S  *  F  S  A  M  V  S  F  I  V  *  V  L  L  A  G  W  E  S  M  I  Q  K  N  I  L  G  L  F  V  W  F  H  L  R  D  A  P  R  T  F  S  S  K  I  G  G  K  E  N  S  W  Q  S  T  M  E  I  S  M  *  Y  I  L  A  L  L  Q  T  P  W  Y  I  S  W  T  K  L  I  K  F  G  W  R  C  K  L  *  V  V  *  L  F  L  L  V  S  F  H  P  K  Q  G  Q  T  F  L  V  *  *  E  I  V  F  I  S  L  R  F  V  F  M  E  G  A  A  Y  P  I  L  S  I  K  T  D  T  T  R  E  S  S  V  T  I  G  E  N  K  I  L  L  R  A  F  G  L  M  H  R  R  T  F  Q  P  L  P  E  K  I  C  D  R   : G  P  Q  I  Q  G  P  S  S  N  G  F  I  E  S  C  R  C  S  Q  V  A  T  L  L  R  K  K  *  K  R  T  D  G  S  D  V  S  V  N  V  V  K  R  P  G  R  H  D  K  G  Q  G  S  N  H  V  I  S  Q  F  I  V  L  Y  K  L  S  L  N  N  F  L  Q  C  R  *  H  F  R  V  M  V  *  L  N  L  L  K  F  N  L  S  *  L  N  K  S  F  R  Y  F  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54477" stop="54520"/>
                    <exon start="56560" stop="57658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAAMAGRKRRKMKSLAVTAPNNGAASSEEREESDEQNSLFCVPVDILEQILSRLNLKENILASAVCKQWLAAAISVRVANKPPWLMFFPKFGDLVEFYDPSVRQTYSVELPELRGSRLCYAKDGWLLLYKPRTLRVFFFNPYTKEVINLPGLELTYQIVAFSAAPTSPDCIVFTVKHVSPTLVAISTCKPGATEWTTANYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVYDPEEHTWLVRVVPPPRCPENFFVKNWWKGKFMAEHDGDIYVIYTCSTANPVVYKLDQINKIWVEMQTLGGLTLFASFLSSQARTDILGVMRNSIYFSKVRFYGRRCISYSLDKNRYYPRKQCYDWGEQDPFESIWIDAPADLSAFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58839" e_stop="59163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58839" e_stop="59163" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58839" stop="59148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58870" stop="59163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTCTTCCAGGGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTATGCTGT</gDNA_template>
            <first_frame> H  F  F  Q  G  L  K  Y  K  V  P  L  Q  T  A  S  S  R  A  A  D  V  V  K  *  P  P  C  C  G  K  S  E  S  E  P  M  V  Q  M  Y  Q  *  M  L  S  K  D  L  E  G  M  I  K  D  R  V  L  I  M  S  S  L  N  L  *  Y  F  I  S  C  H  *  T  I  S  F  S  V  D  N  I  L  G  *  W  C  S  *  I  C  *  S  L  I  *  A  D  *  I  R  A  L  G  T  S  M  L  </first_frame>
            <second_frame>  I  S  S  R  A  S  N  T  R  S  L  F  K  R  L  H  R  E  L  Q  M  *  S  S  S  H  L  A  A  E  K  V  K  A  N  R  W  F  R  C  I  S  K  C  C  Q  K  T  W  K  A  *  *  R  T  G  F  *  S  C  H  L  S  I  Y  S  T  L  *  V  V  I  K  Q  F  P  S  V  *  I  T  F  *  G  N  G  V  V  E  S  V  E  V  *  F  K  L  T  K  *  E  L  *  V  L  L  C  C </second_frame>
            <third_frame>   F  L  P  G  P  Q  I  Q  G  P  S  S  N  G  F  I  E  S  C  R  C  S  Q  V  A  T  L  L  R  K  K  *  K  R  T  D  G  S  D  V  S  V  N  V  V  K  R  P  G  R  H  D  K  G  Q  G  S  N  H  V  I  S  Q  F  I  V  L  Y  K  L  S  L  N  N  F  L  Q  C  R  *  H  F  R  V  M  V  *  L  N  L  L  K  F  N  L  S  *  L  N  K  S  F  R  Y  F  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="54421" e_stop="54520"/>
            <exon e_start="58851" e_stop="59163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.996" e_score="0.960"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="54421" e_stop="54520" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54521" i_stop="58850" i_length="4330"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="58851" e_stop="59163" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54421" stop="54520"/>
              <exon start="58851" stop="59148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58870" stop="59163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAAACATATACTGCTTTGCTTTAACTTAGATAGAAACGCCCAAAGCTGAGTTCTTGCAGCCATGGCTGGAAGAAAAAGAAGAAAAATGAAGTC : GGCCTCAAATACAAGGTCCCTCTTCAAACGGCTTCATCGAGAGCTGCAGATGTAGTCAAGTAGCCACCTTGCTGCGGAAAAAGTGAAAGCGAACCGATGGTTCAGATGTATCAGTAAATGTTGTCAAAAGACCTGGAAGGCATGATAAAGGACAGGGTTCTAATCATGTCATCTCTCAATTTATAGTACTTTATAAGTTGTCATTAAACAATTTCCTTCAGTGTAGATAACATTTTAGGGTAATGGTGTAGTTGAATCTGTTGAAGTTTAATTTAAGCTGACTAAATAAGAGCTTTAGGTACTTCTATGCTGT</gDNA_template>
            <first_frame> K  K  K  N  I  Y  C  F  A  L  T  *  I  E  T  P  K  A  E  F  L  Q  P  W  L  E  E  K  E  E  K  *  S   : R  P  Q  I  Q  G  P  S  S  N  G  F  I  E  S  C  R  C  S  Q  V  A  T  L  L  R  K  K  *  K  R  T  D  G  S  D  V  S  V  N  V  V  K  R  P  G  R  H  D  K  G  Q  G  S  N  H  V  I  S  Q  F  I  V  L  Y  K  L  S  L  N  N  F  L  Q  C  R  *  H  F  R  V  M  V  *  L  N  L  L  K  F  N  L  S  *  L  N  K  S  F  R  Y  F  Y  A   </first_frame>
            <second_frame>  K  K  K  T  Y  T  A  L  L  *  L  R  *  K  R  P  K  L  S  S  C  S  H  G  W  K  K  K  K  K  N  E  V  :  G  L  K  Y  K  V  P  L  Q  T  A  S  S  R  A  A  D  V  V  K  *  P  P  C  C  G  K  S  E  S  E  P  M  V  Q  M  Y  Q  *  M  L  S  K  D  L  E  G  M  I  K  D  R  V  L  I  M  S  S  L  N  L  *  Y  F  I  S  C  H  *  T  I  S  F  S  V  D  N  I  L  G  *  W  C  S  *  I  C  *  S  L  I  *  A  D  *  I  R  A  L  G  T  S  M  L  </second_frame>
            <third_frame>   K  K  K  H  I  L  L  C  F  N  L  D  R  N  A  Q  S  *  V  L  A  A  M  A  G  R  K  R  R  K  M  K  S :   A  S  N  T  R  S  L  F  K  R  L  H  R  E  L  Q  M  *  S  S  S  H  L  A  A  E  K  V  K  A  N  R  W  F  R  C  I  S  K  C  C  Q  K  T  W  K  A  *  *  R  T  G  F  *  S  C  H  L  S  I  Y  S  T  L  *  V  V  I  K  Q  F  P  S  V  *  I  T  F  *  G  N  G  V  V  E  S  V  E  V  *  F  K  L  T  K  *  E  L  *  V  L  L  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="56949" PGL_stop="56644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56949" e_stop="56644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="56949" e_stop="56644" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56949" stop="56644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGTATAAGGATTGAAGAAGAACACACGCAAAGTTCTGGGCTTGTATAGCAGCAACCAGCCATCCTTTGCATAACAAAGCCTTGAGCCACGTAACTCTGGTAACTCAACAGAATAAGTTTGCCTCACTGAAGGGTCATAGAATTCAACCAAGTCACCGAATTTCGGGAAAAACATAAGCCAAGGTGGTTTATTCGCAACTCTTACAGAAATGGCAGCAGCAAGCCATTGCTTGCAAACAGCAGAAGCAAGGATATTTTCCTTCAAGTTTAACCGGCTGAGAATCTGTTCTAGAATATCAACCGGC</gDNA_template>
            <first_frame> F  V  *  G  L  K  K  N  T  R  K  V  L  G  L  Y  S  S  N  Q  P  S  F  A  *  Q  S  L  E  P  R  N  S  G  N  S  T  E  *  V  C  L  T  E  G  S  *  N  S  T  K  S  P  N  F  G  K  N  I  S  Q  G  G  L  F  A  T  L  T  E  M  A  A  A  S  H  C  L  Q  T  A  E  A  R  I  F  S  F  K  F  N  R  L  R  I  C  S  R  I  S  T  G </first_frame>
            <second_frame>  S  Y  K  D  *  R  R  T  H  A  K  F  W  A  C  I  A  A  T  S  H  P  L  H  N  K  A  L  S  H  V  T  L  V  T  Q  Q  N  K  F  A  S  L  K  G  H  R  I  Q  P  S  H  R  I  S  G  K  T  *  A  K  V  V  Y  S  Q  L  L  Q  K  W  Q  Q  Q  A  I  A  C  K  Q  Q  K  Q  G  Y  F  P  S  S  L  T  G  *  E  S  V  L  E  Y  Q  P   </second_frame>
            <third_frame>   R  I  R  I  E  E  E  H  T  Q  S  S  G  L  V  *  Q  Q  P  A  I  L  C  I  T  K  P  *  A  T  *  L  W  *  L  N  R  I  S  L  P  H  *  R  V  I  E  F  N  Q  V  T  E  F  R  E  K  H  K  P  R  W  F  I  R  N  S  Y  R  N  G  S  S  K  P  L  L  A  N  S  R  S  K  D  I  F  L  Q  V  *  P  A  E  N  L  F  *  N  I  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="64079" PGL_stop="65091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64079" e_stop="64125"/>
            <exon e_start="64212" e_stop="64654"/>
            <exon e_start="65086" e_stop="65091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.522" e_score="0.982"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64079" e_stop="64125" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64126" i_stop="64211" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="64212" e_stop="64654" e_length="443"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.522">
            <gDNA_intron_boundary i_start="64655" i_stop="65085" i_length="431"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="65086" e_stop="65091" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64079" stop="64125"/>
              <exon start="64212" stop="64654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64114" stop="64125"/>
              <exon start="64212" stop="64654"/>
              <exon start="65086" stop="65091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTGCAGATATTGTGGAATATATACAGGCAACTTATGCTCGTTAAG : ATAATTTCACAGGAGAATACATGCTATGAGGCTCAAAGTTACTTCTTTTATGAATGAACTGAAGATAAATTTTTATATGGAGATGAGTATATAAAAGGAAAGATGTTCTGGAGTACATTGATGTTCCATCTACCTACATCCTCACCAAATCTGTGTTTTCAGTCTGTAAAAGTAAATGGCTTTGACACTGTCCAAAAGATTGGCCTATGTTACTAAAAACCAACTGGAAACTTCATCCATTGCCCACTCTTCACATTATTATTAATTCAATATGTTATTATTTCATGTCGTGTTGTTTGTATTAACAGTCAACTTATGTTAAATATTTTATGTTAGACCGTAGCTTGGCTATATAGGTGATTAACTTTGTAAATATCAACTCTCCAGAGAAAAAATTATGGTTCAGAATGTATGACTTGTATATCTAGTCCAACAAACTGTGA : GAAAAT</gDNA_template>
            <first_frame> K  C  R  Y  C  G  I  Y  T  G  N  L  C  S  L  R :   *  F  H  R  R  I  H  A  M  R  L  K  V  T  S  F  M  N  E  L  K  I  N  F  Y  M  E  M  S  I  *  K  E  R  C  S  G  V  H  *  C  S  I  Y  L  H  P  H  Q  I  C  V  F  S  L  *  K  *  M  A  L  T  L  S  K  R  L  A  Y  V  T  K  N  Q  L  E  T  S  S  I  A  H  S  S  H  Y  Y  *  F  N  M  L  L  F  H  V  V  L  F  V  L  T  V  N  L  C  *  I  F  Y  V  R  P  *  L  G  Y  I  G  D  *  L  C  K  Y  Q  L  S  R  E  K  I  M  V  Q  N  V  *  L  V  Y  L  V  Q  Q  T  V   : R  K  </first_frame>
            <second_frame>  S  A  D  I  V  E  Y  I  Q  A  T  Y  A  R  *   : D  N  F  T  G  E  Y  M  L  *  G  S  K  L  L  L  L  *  M  N  *  R  *  I  F  I  W  R  *  V  Y  K  R  K  D  V  L  E  Y  I  D  V  P  S  T  Y  I  L  T  K  S  V  F  S  V  C  K  S  K  W  L  *  H  C  P  K  D  W  P  M  L  L  K  T  N  W  K  L  H  P  L  P  T  L  H  I  I  I  N  S  I  C  Y  Y  F  M  S  C  C  L  Y  *  Q  S  T  Y  V  K  Y  F  M  L  D  R  S  L  A  I  *  V  I  N  F  V  N  I  N  S  P  E  K  K  L  W  F  R  M  Y  D  L  Y  I  *  S  N  K  L  *  :  E  N </second_frame>
            <third_frame>   V  Q  I  L  W  N  I  Y  R  Q  L  M  L  V  K  :  I  I  S  Q  E  N  T  C  Y  E  A  Q  S  Y  F  F  Y  E  *  T  E  D  K  F  L  Y  G  D  E  Y  I  K  G  K  M  F  W  S  T  L  M  F  H  L  P  T  S  S  P  N  L  C  F  Q  S  V  K  V  N  G  F  D  T  V  Q  K  I  G  L  C  Y  *  K  P  T  G  N  F  I  H  C  P  L  F  T  L  L  L  I  Q  Y  V  I  I  S  C  R  V  V  C  I  N  S  Q  L  M  L  N  I  L  C  *  T  V  A  W  L  Y  R  *  L  T  L  *  I  S  T  L  Q  R  K  N  Y  G  S  E  C  M  T  C  I  S  S  P  T  N  C  E :   K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0004D19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="68070" PGL_stop="73948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69415" e_stop="69428"/>
            <exon e_start="69534" e_stop="69630"/>
            <exon e_start="71167" e_stop="71387"/>
            <exon e_start="71491" e_stop="71597"/>
            <exon e_start="71750" e_stop="71852"/>
            <exon e_start="72645" e_stop="72824"/>
            <exon e_start="73731" e_stop="73948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.736" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69415" e_stop="69428" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.736" acc_prob="0.951">
            <gDNA_intron_boundary i_start="69429" i_stop="69533" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69534" e_stop="69630" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69631" i_stop="71166" i_length="1536"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71167" e_stop="71387" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71388" i_stop="71490" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71491" e_stop="71597" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71598" i_stop="71749" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71750" e_stop="71852" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71853" i_stop="72644" i_length="792"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72645" e_stop="72824" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72825" i_stop="73730" i_length="906"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73731" e_stop="73948" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69415" stop="69428"/>
              <exon start="69534" stop="69630"/>
              <exon start="71167" stop="71387"/>
              <exon start="71491" stop="71597"/>
              <exon start="71750" stop="71852"/>
              <exon start="72645" stop="72819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69416" stop="69428"/>
              <exon start="69534" stop="69630"/>
              <exon start="71167" stop="71322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71271" stop="71387"/>
              <exon start="71491" stop="71597"/>
              <exon start="71750" stop="71852"/>
              <exon start="72645" stop="72824"/>
              <exon start="73731" stop="73948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGATATCCTCT : TTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTG : GTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGG : ATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACA : ATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAG : CTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTGGCAAG : GTGAGATCAATATCAAGAGAACAAGTAGAAGAATTGAGAGCTCCATTGGATCCAACATGCAAGAGAAATGCAAGACCAACTCAACCCTTAAATGGAAGACAAATCCAAATGTATGAAGCCCAACCCACCCCTTAATTATCAAATGGAAGACAAATAAATATGTTATATGTGTACAAAAATTCCCCTAATAAAAGACTCCTACGAAAGAAAGAAAAAAA</gDNA_template>
            <first_frame> F  R  Y  P  L :   F  L  E  *  Q  W  L  M  L  V  G  F  Q  F  G  *  S  I  Y  V  *  F  F  C  S  I  Y  F  L  L  H  L  :  V  M  L  W  E  S  N  L  V  T  Q  A  Q  *  A  Q  M  V  G  E  G  *  A  Q  H  I  Q  P  A  Q  M  A  N  H  S  P  Q  L  T  *  L  A  I  I  V  L  L  T  R  I  *  S  P  *  L  C  N  I  I  I  L  K  L  L  L  W  L  I  M  A  L  M  L  G :   *  N  M  V  I  M  Q  E  V  *  L  W  M  V  K  L  T  I  L  S  K  C  I  G  I  P  L  L  N  I  Q  L  M  A  N   : N  M  Q  Q  S  F  I  *  F  I  L  L  K  I  I  L  *  Q  F  Y  Q  F  S  S  I  W  A  I  L  I  L  *  *  P  S :   F  K  T  N  *  M  S  *  Q  G  M  *  Q  H  I  K  K  H  K  C  S  L  E  *  L  I  H  M  K  *  G  N  I  L  T  N  I  T  H  T  L  V  L  *  Q  L  H  H  A  L  K  L  S  L  G  T  F  L  A  R :   *  D  Q  Y  Q  E  N  K  *  K  N  *  E  L  H  W  I  Q  H  A  R  E  M  Q  D  Q  L  N  P  *  M  E  D  K  S  K  C  M  K  P  N  P  P  L  N  Y  Q  M  E  D  K  *  I  C  Y  M  C  T  K  I  P  L  I  K  D  S  Y  E  R  K  K  K  </first_frame>
            <second_frame>  S  D  I  L   : F  F  W  N  S  N  G  *  C  W  W  D  F  S  L  G  D  Q  Y  M  C  S  S  S  A  Q  S  I  F  Y  C  I  W :   *  C  F  G  S  Q  I  W  L  H  R  P  S  R  P  K  W  L  G  K  V  K  P  N  I  F  S  L  L  K  W  Q  I  T  V  P  N  *  H  N  *  P  *  L  C  C  *  Q  E  F  K  A  L  N  Y  A  I  *  S  F  *  S  C  Y  F  G  *  *  W  L  *  C  W   : D  K  I  W  *  *  C  R  K  F  N  C  G  W  *  N  L  Q  F  *  A  N  A  L  A  F  P  F  *  T  Y  N  *  W  Q  T  :  I  C  S  R  A  S  S  S  S  F  C  S  R  *  Y  Y  S  S  F  I  N  S  L  P  F  G  P  S  *  S  S  N  D  Q   : A  S  K  Q  T  E  *  A  S  K  G  C  S  N  T  *  R  N  T  S  A  A  W  S  N  *  Y  T  *  N  K  E  T  F  S  Q  I  L  L  I  H  W  F  F  N  N  S  T  M  H  *  N  C  L  L  V  H  S  W  Q   : G  E  I  N  I  K  R  T  S  R  R  I  E  S  S  I  G  S  N  M  Q  E  K  C  K  T  N  S  T  L  K  W  K  T  N  P  N  V  *  S  P  T  H  P  L  I  I  K  W  K  T  N  K  Y  V  I  C  V  Q  K  F  P  *  *  K  T  P  T  K  E  R  K  K </second_frame>
            <third_frame>   Q  I  S  S  :  F  F  G  I  A  M  A  D  V  G  G  I  S  V  W  V  I  N  I  C  V  V  L  L  L  N  L  F  S  T  A  S   : G  D  A  L  G  V  K  F  G  Y  T  G  P  V  G  P  N  G  W  G  R  L  S  P  T  Y  S  A  C  S  N  G  K  S  Q  S  P  I  N  I  I  S  H  N  C  V  V  N  K  N  L  K  P  L  I  M  Q  Y  N  H  S  E  V  A  T  L  V  D  N  G  F  N  V  G  :  I  K  Y  G  D  N  A  G  S  L  I  V  D  G  K  T  Y  N  F  K  Q  M  H  W  H  S  P  S  E  H  T  I  D  G  K  Q :   Y  A  A  E  L  H  L  V  H  F  A  Q  D  N  T  I  A  V  L  S  I  L  F  H  L  G  H  P  D  P  L  M  T  K  :  L  Q  N  K  L  N  E  L  A  R  D  V  A  T  H  K  E  T  Q  V  Q  L  G  V  I  D  T  H  E  I  R  K  H  S  H  K  Y  Y  S  Y  T  G  S  L  T  T  P  P  C  T  E  I  V  S  W  Y  I  L  G  K  :  V  R  S  I  S  R  E  Q  V  E  E  L  R  A  P  L  D  P  T  C  K  R  N  A  R  P  T  Q  P  L  N  G  R  Q  I  Q  M  Y  E  A  Q  P  T  P  *  L  S  N  G  R  Q  I  N  M  L  Y  V  Y  K  N  S  P  N  K  R  L  L  R  K  K  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69417" stop="69428"/>
                    <exon start="69534" stop="69630"/>
                    <exon start="71167" stop="71387"/>
                    <exon start="71491" stop="71597"/>
                    <exon start="71750" stop="71852"/>
                    <exon start="72645" stop="72824"/>
                    <exon start="73731" stop="73865"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISSFFGIAMADVGGISVWVINICVVLLLNLFSTASGDALGVKFGYTGPVGPNGWGRLSPTYSACSNGKSQSPINIISHNCVVNKNLKPLIMQYNHSEVATLVDNGFNVGIKYGDNAGSLIVDGKTYNFKQMHWHSPSEHTIDGKQYAAELHLVHFAQDNTIAVLSILFHLGHPDPLMTKLQNKLNELARDVATHKETQVQLGVIDTHEIRKHSHKYYSYTGSLTTPPCTEIVSWYILGKVRSISREQVEELRAPLDPTCKRNARPTQPLNGRQIQMYEAQPTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68070" e_stop="68193"/>
            <exon e_start="69534" e_stop="69630"/>
            <exon e_start="71167" e_stop="71387"/>
            <exon e_start="71491" e_stop="71597"/>
            <exon e_start="71750" e_stop="71852"/>
            <exon e_start="72645" e_stop="72824"/>
            <exon e_start="73731" e_stop="73948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.951" e_score="0.847"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.897"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="0.973"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.847">
            <gDNA_exon_boundary e_start="68070" e_stop="68193" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.951">
            <gDNA_intron_boundary i_start="68194" i_stop="69533" i_length="1340"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="69534" e_stop="69630" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69631" i_stop="71166" i_length="1536"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="71167" e_stop="71387" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71388" i_stop="71490" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71491" e_stop="71597" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71598" i_stop="71749" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71750" e_stop="71852" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71853" i_stop="72644" i_length="792"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72645" e_stop="72824" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72825" i_stop="73730" i_length="906"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73731" e_stop="73948" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68070" stop="68193"/>
              <exon start="69534" stop="69630"/>
              <exon start="71167" stop="71387"/>
              <exon start="71491" stop="71597"/>
              <exon start="71750" stop="71815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71271" stop="71387"/>
              <exon start="71491" stop="71597"/>
              <exon start="71750" stop="71852"/>
              <exon start="72645" stop="72824"/>
              <exon start="73731" stop="73948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTTTGGCCTTTCAGTTCTAAAATAATCTTCAAGAATCAACTCATAAATATACATGTAATCATACTTTTTTTCGAGGGTCATTTGATTGGGTACAAGTTATTACGAGATTATTGTAGATCAG : TTTTTTGGAATAGCAATGGCTGATGTTGGTGGGATTTCAGTTTGGGTGATCAATATATGTGTAGTTCTTCTGCTCAATCTATTTTCTACTGCATCTG : GTGATGCTTTGGGAGTCAAATTTGGTTACACAGGCCCAGTAGGCCCAAATGGTTGGGGAAGGTTAAGCCCAACATATTCAGCCTGCTCAAATGGCAAATCACAGTCCCCAATTAACATAATTAGCCATAATTGTGTTGTTAACAAGAATTTAAAGCCCTTAATTATGCAATATAATCATTCTGAAGTTGCTACTTTGGTTGATAATGGCTTTAATGTTGGG : ATAAAATATGGTGATAATGCAGGAAGTTTAATTGTGGATGGTAAAACTTACAATTTTAAGCAAATGCATTGGCATTCCCCTTCTGAACATACAATTGATGGCAAACA : ATATGCAGCAGAGCTTCATCTAGTTCATTTTGCTCAAGATAATACTATAGCAGTTTTATCAATTCTCTTCCATTTGGGCCATCCTGATCCTCTAATGACCAAG : CTTCAAAACAAACTGAATGAGCTAGCAAGGGATGTAGCAACACATAAAGAAACACAAGTGCAGCTTGGAGTAATTGATACACATGAAATAAGGAAACATTCTCACAAATATTACTCATACACTGGTTCTTTAACAACTCCACCATGCACTGAAATTGTCTCTTGGTACATTCTTGGCAAG : GTGAGATCAATATCAAGAGAACAAGTAGAAGAATTGAGAGCTCCATTGGATCCAACATGCAAGAGAAATGCAAGACCAACTCAACCCTTAAATGGAAGACAAATCCAAATGTATGAAGCCCAACCCACCCCTTAATTATCAAATGGAAGACAAATAAATATGTTATATGTGTACAAAAATTCCCCTAATAAAAGACTCCTACGAAAGAAAGAAAAAAA</gDNA_template>
            <first_frame> T  F  W  P  F  S  S  K  I  I  F  K  N  Q  L  I  N  I  H  V  I  I  L  F  F  E  G  H  L  I  G  Y  K  L  L  R  D  Y  C  R  S   : V  F  W  N  S  N  G  *  C  W  W  D  F  S  L  G  D  Q  Y  M  C  S  S  S  A  Q  S  I  F  Y  C  I  W :   *  C  F  G  S  Q  I  W  L  H  R  P  S  R  P  K  W  L  G  K  V  K  P  N  I  F  S  L  L  K  W  Q  I  T  V  P  N  *  H  N  *  P  *  L  C  C  *  Q  E  F  K  A  L  N  Y  A  I  *  S  F  *  S  C  Y  F  G  *  *  W  L  *  C  W   : D  K  I  W  *  *  C  R  K  F  N  C  G  W  *  N  L  Q  F  *  A  N  A  L  A  F  P  F  *  T  Y  N  *  W  Q  T  :  I  C  S  R  A  S  S  S  S  F  C  S  R  *  Y  Y  S  S  F  I  N  S  L  P  F  G  P  S  *  S  S  N  D  Q   : A  S  K  Q  T  E  *  A  S  K  G  C  S  N  T  *  R  N  T  S  A  A  W  S  N  *  Y  T  *  N  K  E  T  F  S  Q  I  L  L  I  H  W  F  F  N  N  S  T  M  H  *  N  C  L  L  V  H  S  W  Q   : G  E  I  N  I  K  R  T  S  R  R  I  E  S  S  I  G  S  N  M  Q  E  K  C  K  T  N  S  T  L  K  W  K  T  N  P  N  V  *  S  P  T  H  P  L  I  I  K  W  K  T  N  K  Y  V  I  C  V  Q  K  F  P  *  *  K  T  P  T  K  E  R  K  K </first_frame>
            <second_frame>  H  F  G  L  S  V  L  K  *  S  S  R  I  N  S  *  I  Y  M  *  S  Y  F  F  S  R  V  I  *  L  G  T  S  Y  Y  E  I  I  V  D  Q  :  F  F  G  I  A  M  A  D  V  G  G  I  S  V  W  V  I  N  I  C  V  V  L  L  L  N  L  F  S  T  A  S   : G  D  A  L  G  V  K  F  G  Y  T  G  P  V  G  P  N  G  W  G  R  L  S  P  T  Y  S  A  C  S  N  G  K  S  Q  S  P  I  N  I  I  S  H  N  C  V  V  N  K  N  L  K  P  L  I  M  Q  Y  N  H  S  E  V  A  T  L  V  D  N  G  F  N  V  G  :  I  K  Y  G  D  N  A  G  S  L  I  V  D  G  K  T  Y  N  F  K  Q  M  H  W  H  S  P  S  E  H  T  I  D  G  K  Q :   Y  A  A  E  L  H  L  V  H  F  A  Q  D  N  T  I  A  V  L  S  I  L  F  H  L  G  H  P  D  P  L  M  T  K  :  L  Q  N  K  L  N  E  L  A  R  D  V  A  T  H  K  E  T  Q  V  Q  L  G  V  I  D  T  H  E  I  R  K  H  S  H  K  Y  Y  S  Y  T  G  S  L  T  T  P  P  C  T  E  I  V  S  W  Y  I  L  G  K  :  V  R  S  I  S  R  E  Q  V  E  E  L  R  A  P  L  D  P  T  C  K  R  N  A  R  P  T  Q  P  L  N  G  R  Q  I  Q  M  Y  E  A  Q  P  T  P  *  L  S  N  G  R  Q  I  N  M  L  Y  V  Y  K  N  S  P  N  K  R  L  L  R  K  K  E  K   </second_frame>
            <third_frame>   I  L  A  F  Q  F  *  N  N  L  Q  E  S  T  H  K  Y  T  C  N  H  T  F  F  R  G  S  F  D  W  V  Q  V  I  T  R  L  L  *  I  S :   F  L  E  *  Q  W  L  M  L  V  G  F  Q  F  G  *  S  I  Y  V  *  F  F  C  S  I  Y  F  L  L  H  L  :  V  M  L  W  E  S  N  L  V  T  Q  A  Q  *  A  Q  M  V  G  E  G  *  A  Q  H  I  Q  P  A  Q  M  A  N  H  S  P  Q  L  T  *  L  A  I  I  V  L  L  T  R  I  *  S  P  *  L  C  N  I  I  I  L  K  L  L  L  W  L  I  M  A  L  M  L  G :   *  N  M  V  I  M  Q  E  V  *  L  W  M  V  K  L  T  I  L  S  K  C  I  G  I  P  L  L  N  I  Q  L  M  A  N   : N  M  Q  Q  S  F  I  *  F  I  L  L  K  I  I  L  *  Q  F  Y  Q  F  S  S  I  W  A  I  L  I  L  *  *  P  S :   F  K  T  N  *  M  S  *  Q  G  M  *  Q  H  I  K  K  H  K  C  S  L  E  *  L  I  H  M  K  *  G  N  I  L  T  N  I  T  H  T  L  V  L  *  Q  L  H  H  A  L  K  L  S  L  G  T  F  L  A  R :   *  D  Q  Y  Q  E  N  K  *  K  N  *  E  L  H  W  I  Q  H  A  R  E  M  Q  D  Q  L  N  P  *  M  E  D  K  S  K  C  M  K  P  N  P  P  L  N  Y  Q  M  E  D  K  *  I  C  Y  M  C  T  K  I  P  L  I  K  D  S  Y  E  R  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68158" stop="68193"/>
                    <exon start="69534" stop="69630"/>
                    <exon start="71167" stop="71387"/>
                    <exon start="71491" stop="71597"/>
                    <exon start="71750" stop="71852"/>
                    <exon start="72645" stop="72824"/>
                    <exon start="73731" stop="73865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGTSYYEIIVDQFFGIAMADVGGISVWVINICVVLLLNLFSTASGDALGVKFGYTGPVGPNGWGRLSPTYSACSNGKSQSPINIISHNCVVNKNLKPLIMQYNHSEVATLVDNGFNVGIKYGDNAGSLIVDGKTYNFKQMHWHSPSEHTIDGKQYAAELHLVHFAQDNTIAVLSILFHLGHPDPLMTKLQNKLNELARDVATHKETQVQLGVIDTHEIRKHSHKYYSYTGSLTTPPCTEIVSWYILGKVRSISREQVEELRAPLDPTCKRNARPTQPLNGRQIQMYEAQPTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="77713" PGL_stop="76321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77713" e_stop="76321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="77713" e_stop="76321" e_length="1393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77713" stop="77129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77712" stop="76937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77712" stop="76984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77702" stop="77105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77565" stop="77071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77447" stop="77018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77370" stop="77044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77370" stop="77077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77369" stop="76762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76885" stop="76321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76820" stop="76321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTTATATTTTTTCTCTCTCTAAGATTTTCTTCTTCTTTCTCTCTCTAGAATGCCTCAAGTTGATTTGGAAACTCTAGTTTCGGCATGTGCCGGCGGCGGGAGTGACCGGAAAGTTGCATGTGAGACTTTGGCTGACAGTGACGGCGACGGCGAAAAACGTGTGAAAGACGATTTGGATGATGAGGAGAAGCAATCGGAGCATCCGCCTGATTTCCCCCCGGAATCGTTCTGGCTTTCGAAAGATGCTGAGTTCGATTGGTTTGATCGGAATGCCTTTTTGGACCGGAAACAGTCTACGAAAGGTATCGGTCATAATCCAGGTTCGAATTCGAGTTCGCAGAGATTTTCGTCGACTTTGAAAAGTAAGGCTTCGATTATCGGATTTCCGAAGACTCAGAAGACTAGTTTCATCGATTCGAAACGGCGAACTTGTAAACCGGCGAACATTAGGCTTTTCCCGGCGAAAAGGTCTGAATCTACGTTGAAATCGGCTTCGGTTACGGAACCGTCGTCACCGAAGGTATCTTGTATGGGAAGAGTAAGATCGAAACGTAGATCACGAAGCCGACGATCATCGGAGAAATCAAAAAAATGTGAAAAAAATTCACTCGAGAGATCACGAAGCAACAATGGAGAGAAACGCAAATCCGGATTCTGTTCACGATTACTATCAATATTCCGATCTAATCGGAGTAACAAAAAACCGTCAAGGTCCAGTACTGATAAAACGCTAGGTTCAAAGTCGACGACGGAGCCGATAAATCCGCTGAGAAAGAGCAAAAGTGTGACCGTAGGGAAAACTCGCGGAGGAGCTCCGGTTAGCGTTGAACCGGTTGGGTTAGGAGGAATGAAACGGTTCTCCTCCGGCCGGCGATCGGAATCATGGGGAGGCGATGAAATCAACGCAGTTGTTTAAGTGGGTCCCAATGAAAGTGGAAAAAACAAAAAGCAAAGCACAAAAAGTCTTGATGGTAGTTGGAATTTTGGCAGGAAAATTTAACGGCCTTTGTTCACATATTCGGTTAAAATTTCGAGGTAAAAAAAAAATGATACGTACTTCTTTTGGAGTTTATTTTTCTTTTATAAAAATGTTTTTTTTTTAACTTTTCAATAATATAATGATAACGAATAGGTTTTTATATATATATATATATATTGTAAATATATTTTGGTTTTTGGAGTGAAGGTTTGTAAATTTTTACTATTTTCTATTAGTAGTTTAGAATATTATAATGAAAATTATTTGGAAATAATGTTTTTTTGTCTTTTATTATCTAGTGTCTTGTATTTTTTTTGGAGAATCACGAGATTTCAGGTATATAAAATGTAATATAAATTGAATTAATAGATTTACATAGATTTACTGATTCGGCAGTACAGAGTTTAAGAA</gDNA_template>
            <first_frame> T  F  I  F  F  L  S  L  R  F  S  S  S  F  S  L  *  N  A  S  S  *  F  G  N  S  S  F  G  M  C  R  R  R  E  *  P  E  S  C  M  *  D  F  G  *  Q  *  R  R  R  R  K  T  C  E  R  R  F  G  *  *  G  E  A  I  G  A  S  A  *  F  P  P  G  I  V  L  A  F  E  R  C  *  V  R  L  V  *  S  E  C  L  F  G  P  E  T  V  Y  E  R  Y  R  S  *  S  R  F  E  F  E  F  A  E  I  F  V  D  F  E  K  *  G  F  D  Y  R  I  S  E  D  S  E  D  *  F  H  R  F  E  T  A  N  L  *  T  G  E  H  *  A  F  P  G  E  K  V  *  I  Y  V  E  I  G  F  G  Y  G  T  V  V  T  E  G  I  L  Y  G  K  S  K  I  E  T  *  I  T  K  P  T  I  I  G  E  I  K  K  M  *  K  K  F  T  R  E  I  T  K  Q  Q  W  R  E  T  Q  I  R  I  L  F  T  I  T  I  N  I  P  I  *  S  E  *  Q  K  T  V  K  V  Q  Y  *  *  N  A  R  F  K  V  D  D  G  A  D  K  S  A  E  K  E  Q  K  C  D  R  R  E  N  S  R  R  S  S  G  *  R  *  T  G  W  V  R  R  N  E  T  V  L  L  R  P  A  I  G  I  M  G  R  R  *  N  Q  R  S  C  L  S  G  S  Q  *  K  W  K  K  Q  K  A  K  H  K  K  S  *  W  *  L  E  F  W  Q  E  N  L  T  A  F  V  H  I  F  G  *  N  F  E  V  K  K  K  *  Y  V  L  L  L  E  F  I  F  L  L  *  K  C  F  F  F  N  F  S  I  I  *  *  *  R  I  G  F  Y  I  Y  I  Y  I  L  *  I  Y  F  G  F  W  S  E  G  L  *  I  F  T  I  F  Y  *  *  F  R  I  L  *  *  K  L  F  G  N  N  V  F  L  S  F  I  I  *  C  L  V  F  F  L  E  N  H  E  I  S  G  I  *  N  V  I  *  I  E  L  I  D  L  H  R  F  T  D  S  A  V  Q  S  L  R  </first_frame>
            <second_frame>  H  L  Y  F  F  S  L  *  D  F  L  L  L  S  L  S  R  M  P  Q  V  D  L  E  T  L  V  S  A  C  A  G  G  G  S  D  R  K  V  A  C  E  T  L  A  D  S  D  G  D  G  E  K  R  V  K  D  D  L  D  D  E  E  K  Q  S  E  H  P  P  D  F  P  P  E  S  F  W  L  S  K  D  A  E  F  D  W  F  D  R  N  A  F  L  D  R  K  Q  S  T  K  G  I  G  H  N  P  G  S  N  S  S  S  Q  R  F  S  S  T  L  K  S  K  A  S  I  I  G  F  P  K  T  Q  K  T  S  F  I  D  S  K  R  R  T  C  K  P  A  N  I  R  L  F  P  A  K  R  S  E  S  T  L  K  S  A  S  V  T  E  P  S  S  P  K  V  S  C  M  G  R  V  R  S  K  R  R  S  R  S  R  R  S  S  E  K  S  K  K  C  E  K  N  S  L  E  R  S  R  S  N  N  G  E  K  R  K  S  G  F  C  S  R  L  L  S  I  F  R  S  N  R  S  N  K  K  P  S  R  S  S  T  D  K  T  L  G  S  K  S  T  T  E  P  I  N  P  L  R  K  S  K  S  V  T  V  G  K  T  R  G  G  A  P  V  S  V  E  P  V  G  L  G  G  M  K  R  F  S  S  G  R  R  S  E  S  W  G  G  D  E  I  N  A  V  V  *  V  G  P  N  E  S  G  K  N  K  K  Q  S  T  K  S  L  D  G  S  W  N  F  G  R  K  I  *  R  P  L  F  T  Y  S  V  K  I  S  R  *  K  K  N  D  T  Y  F  F  W  S  L  F  F  F  Y  K  N  V  F  F  L  T  F  Q  *  Y  N  D  N  E  *  V  F  I  Y  I  Y  I  Y  C  K  Y  I  L  V  F  G  V  K  V  C  K  F  L  L  F  S  I  S  S  L  E  Y  Y  N  E  N  Y  L  E  I  M  F  F  C  L  L  L  S  S  V  L  Y  F  F  W  R  I  T  R  F  Q  V  Y  K  M  *  Y  K  L  N  *  *  I  Y  I  D  L  L  I  R  Q  Y  R  V  *  E </second_frame>
            <third_frame>   I  Y  I  F  S  L  S  K  I  F  F  F  F  L  S  L  E  C  L  K  L  I  W  K  L  *  F  R  H  V  P  A  A  G  V  T  G  K  L  H  V  R  L  W  L  T  V  T  A  T  A  K  N  V  *  K  T  I  W  M  M  R  R  S  N  R  S  I  R  L  I  S  P  R  N  R  S  G  F  R  K  M  L  S  S  I  G  L  I  G  M  P  F  W  T  G  N  S  L  R  K  V  S  V  I  I  Q  V  R  I  R  V  R  R  D  F  R  R  L  *  K  V  R  L  R  L  S  D  F  R  R  L  R  R  L  V  S  S  I  R  N  G  E  L  V  N  R  R  T  L  G  F  S  R  R  K  G  L  N  L  R  *  N  R  L  R  L  R  N  R  R  H  R  R  Y  L  V  W  E  E  *  D  R  N  V  D  H  E  A  D  D  H  R  R  N  Q  K  N  V  K  K  I  H  S  R  D  H  E  A  T  M  E  R  N  A  N  P  D  S  V  H  D  Y  Y  Q  Y  S  D  L  I  G  V  T  K  N  R  Q  G  P  V  L  I  K  R  *  V  Q  S  R  R  R  S  R  *  I  R  *  E  R  A  K  V  *  P  *  G  K  L  A  E  E  L  R  L  A  L  N  R  L  G  *  E  E  *  N  G  S  P  P  A  G  D  R  N  H  G  E  A  M  K  S  T  Q  L  F  K  W  V  P  M  K  V  E  K  T  K  S  K  A  Q  K  V  L  M  V  V  G  I  L  A  G  K  F  N  G  L  C  S  H  I  R  L  K  F  R  G  K  K  K  M  I  R  T  S  F  G  V  Y  F  S  F  I  K  M  F  F  F  *  L  F  N  N  I  M  I  T  N  R  F  L  Y  I  Y  I  Y  I  V  N  I  F  W  F  L  E  *  R  F  V  N  F  Y  Y  F  L  L  V  V  *  N  I  I  M  K  I  I  W  K  *  C  F  F  V  F  Y  Y  L  V  S  C  I  F  F  G  E  S  R  D  F  R  Y  I  K  C  N  I  N  *  I  N  R  F  T  *  I  Y  *  F  G  S  T  E  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77688" stop="76795"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFLLLSLSRMPQVDLETLVSACAGGGSDRKVACETLADSDGDGEKRVKDDLDDEEKQSEHPPDFPPESFWLSKDAEFDWFDRNAFLDRKQSTKGIGHNPGSNSSSQRFSSTLKSKASIIGFPKTQKTSFIDSKRRTCKPANIRLFPAKRSESTLKSASVTEPSSPKVSCMGRVRSKRRSRSRRSSEKSKKCEKNSLERSRSNNGEKRKSGFCSRLLSIFRSNRSNKKPSRSSTDKTLGSKSTTEPINPLRKSKSVTVGKTRGGAPVSVEPVGLGGMKRFSSGRRSESWGGDEINAVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76578" stop="76381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFIYIYIYCKYILVFGVKVCKFLLFSISSLEYYNENYLEIMFFCLLLSSVLYFFWRITRFQVYKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="76464" PGL_stop="77232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76464" e_stop="77232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="76464" e_stop="77232" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76464" stop="76952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76827" stop="77232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAATAATTTTCATTATAATATTCTAAACTACTAATAGAAAATAGTAAAAATTTACAAACCTTCACTCCAAAAACCAAAATATATTTACAATATATATATATATATATAAAAACCTATTCGTTATCATTATATTATTGAAAAGTTAAAAAAAAAACATTTTTATAAAAGAAAAATAAACTCCAAAAGAAGTACGTATCATTTTTTTTTTACCTCGAAATTTTAACCGAATATGTGAACAAAGGCCGTTAAATTTTCCTGCCAAAATTCCAACTACCATCAAGACTTTTTGTGCTTTGCTTTTTGTTTTTTCCACTTTCATTGGGACCCACTTAAACAACTGCGTTGATTTCATCGCCTCCCCATGATTCCGATCGCCGGCCGGAGGAGAACCGTTTCATTCCTCCTAACCCAACCGGTTCAACGCTAACCGGAGCTCCTCCGCGAGTTTTCCCTACGGTCACACTTTTGCTCTTTCTCAGCGGATTTATCGGCTCCGTCGTCGACTTTGAACCTAGCGTTTTATCAGTACTGGACCTTGACGGTTTTTTGTTACTCCGATTAGATCGGAATATTGATAGTAATCGTGAACAGAATCCGGATTTGCGTTTCTCTCCATTGTTGCTTCGTGATCTCTCGAGTGAATTTTTTTCACATTTTTTTGATTTCTCCGATGATCGTCGGCTTCGTGATCTACGTTTCGATCTTACTCTTCCCATACAAGATACCTTCGGTGACGACGGTTCCGTAACCGAAGCCGATTTCAACGT</gDNA_template>
            <first_frame> P  N  N  F  H  Y  N  I  L  N  Y  *  *  K  I  V  K  I  Y  K  P  S  L  Q  K  P  K  Y  I  Y  N  I  Y  I  Y  I  *  K  P  I  R  Y  H  Y  I  I  E  K  L  K  K  K  H  F  Y  K  R  K  I  N  S  K  R  S  T  Y  H  F  F  F  T  S  K  F  *  P  N  M  *  T  K  A  V  K  F  S  C  Q  N  S  N  Y  H  Q  D  F  L  C  F  A  F  C  F  F  H  F  H  W  D  P  L  K  Q  L  R  *  F  H  R  L  P  M  I  P  I  A  G  R  R  R  T  V  S  F  L  L  T  Q  P  V  Q  R  *  P  E  L  L  R  E  F  S  L  R  S  H  F  C  S  F  S  A  D  L  S  A  P  S  S  T  L  N  L  A  F  Y  Q  Y  W  T  L  T  V  F  C  Y  S  D  *  I  G  I  L  I  V  I  V  N  R  I  R  I  C  V  S  L  H  C  C  F  V  I  S  R  V  N  F  F  H  I  F  L  I  S  P  M  I  V  G  F  V  I  Y  V  S  I  L  L  F  P  Y  K  I  P  S  V  T  T  V  P  *  P  K  P  I  S  T  </first_frame>
            <second_frame>  Q  I  I  F  I  I  I  F  *  T  T  N  R  K  *  *  K  F  T  N  L  H  S  K  N  Q  N  I  F  T  I  Y  I  Y  I  Y  K  N  L  F  V  I  I  I  L  L  K  S  *  K  K  N  I  F  I  K  E  K  *  T  P  K  E  V  R  I  I  F  F  L  P  R  N  F  N  R  I  C  E  Q  R  P  L  N  F  P  A  K  I  P  T  T  I  K  T  F  C  A  L  L  F  V  F  S  T  F  I  G  T  H  L  N  N  C  V  D  F  I  A  S  P  *  F  R  S  P  A  G  G  E  P  F  H  S  S  *  P  N  R  F  N  A  N  R  S  S  S  A  S  F  P  Y  G  H  T  F  A  L  S  Q  R  I  Y  R  L  R  R  R  L  *  T  *  R  F  I  S  T  G  P  *  R  F  F  V  T  P  I  R  S  E  Y  *  *  *  S  *  T  E  S  G  F  A  F  L  S  I  V  A  S  *  S  L  E  *  I  F  F  T  F  F  *  F  L  R  *  S  S  A  S  *  S  T  F  R  S  Y  S  S  H  T  R  Y  L  R  *  R  R  F  R  N  R  S  R  F  Q  R </second_frame>
            <third_frame>   K  *  F  S  L  *  Y  S  K  L  L  I  E  N  S  K  N  L  Q  T  F  T  P  K  T  K  I  Y  L  Q  Y  I  Y  I  Y  I  K  T  Y  S  L  S  L  Y  Y  *  K  V  K  K  K  T  F  L  *  K  K  N  K  L  Q  K  K  Y  V  S  F  F  F  Y  L  E  I  L  T  E  Y  V  N  K  G  R  *  I  F  L  P  K  F  Q  L  P  S  R  L  F  V  L  C  F  L  F  F  P  L  S  L  G  P  T  *  T  T  A  L  I  S  S  P  P  H  D  S  D  R  R  P  E  E  N  R  F  I  P  P  N  P  T  G  S  T  L  T  G  A  P  P  R  V  F  P  T  V  T  L  L  L  F  L  S  G  F  I  G  S  V  V  D  F  E  P  S  V  L  S  V  L  D  L  D  G  F  L  L  L  R  L  D  R  N  I  D  S  N  R  E  Q  N  P  D  L  R  F  S  P  L  L  L  R  D  L  S  S  E  F  F  S  H  F  F  D  F  S  D  D  R  R  L  R  D  L  R  F  D  L  T  L  P  I  Q  D  T  F  G  D  D  G  S  V  T  E  A  D  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76799" stop="77230"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTALISSPPHDSDRRPEENRFIPPNPTGSTLTGAPPRVFPTVTLLLFLSGFIGSVVDFEPSVLSVLDLDGFLLLRLDRNIDSNREQNPDLRFSPLLLRDLSSEFFSHFFDFSDDRRLRDLRFDLTLPIQDTFGDDGSVTEADFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="84026" PGL_stop="84232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84026" e_stop="84232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84026" e_stop="84232" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84026" stop="84232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTAGAAACAACAGAGTTTTGTTTGTTAAGTCAATGGCGCAATCTTCAGACAGTTCCAATGGTTCCACTTCTGTGAGCACTCAAGCGGAACCTAATTCTTCATTTTCGCCGCCGCCGAACTTCAAACCGCCGAAACCTAAGCCATTTACACCGAGAGGTGATAAGATTTTGGACATATTGGGTGCTTCTCTTGCTTTGGTTTTT</gDNA_template>
            <first_frame> L  S  R  N  N  R  V  L  F  V  K  S  M  A  Q  S  S  D  S  S  N  G  S  T  S  V  S  T  Q  A  E  P  N  S  S  F  S  P  P  P  N  F  K  P  P  K  P  K  P  F  T  P  R  G  D  K  I  L  D  I  L  G  A  S  L  A  L  V  F </first_frame>
            <second_frame>  S  L  E  T  T  E  F  C  L  L  S  Q  W  R  N  L  Q  T  V  P  M  V  P  L  L  *  A  L  K  R  N  L  I  L  H  F  R  R  R  R  T  S  N  R  R  N  L  S  H  L  H  R  E  V  I  R  F  W  T  Y  W  V  L  L  L  L  W  F   </second_frame>
            <third_frame>   L  *  K  Q  Q  S  F  V  C  *  V  N  G  A  I  F  R  Q  F  Q  W  F  H  F  C  E  H  S  S  G  T  *  F  F  I  F  A  A  A  E  L  Q  T  A  E  T  *  A  I  Y  T  E  R  *  *  D  F  G  H  I  G  C  F  S  C  F  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0004D19.3" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84026" stop="84232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSRNNRVLFVKSMAQSSDSSNGSTSVSTQAEPNSSFSPPPNFKPPKPKPFTPRGDKILDILGASLALVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 195 chains have been computed
$ 
$ memory statistics:
$ 555592 bytes spliced alignments in total
$ 135 spliced alignments have been stored
$ 4115 bytes was the average size of a spliced alignment
$ 29840 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1570 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 226 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 12:01:05
-->
