<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:59:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333550" ref_strand="+" ref_description="SGN-U333550        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 12S seed storage protein (CRA1), nearly identical to SP:P15455 (Plant Mol Biol 11:805-820 (1988)); contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 | chr5:17773491-17775502 REVERSE | Aliases: None(evalue: 7e-36, score=116) genbank/nr: gi|5381325|gb|AAD42944.1| 11S globulin precursor [Sesamum indicum](evalue: 4e-70, score=193)">
      <seq>ccgatgagagagagagagaatcaattagtaataaacaataaaaactccatagccatggaggtctctactaaggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="1974" stop="237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1670" g_stop="1102" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="587" r_length="569" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1101" i_stop="733" i_length="369">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="732" g_stop="537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="783" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-U333550" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1670" e_stop="1102"/>
          <exon e_start="732" e_stop="537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCATAGCCATGGAGGTCTCTACTAAGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA.................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341062" ref_strand="+" ref_description="SGN-U341062        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cggtttttaagaaatagaaaacaaaatggacataagtctgctgaaaagaaacgcattctttaaactacctaatttttgtcctctttttgcactaaactatagcgtaaaatttaagccagtgaatttatattattacaccaatgactataactactagtctactactactagtactatttatatatcttatatctcagccttttgttatatttctccccttattcataactgaatttgcattgtttcaaattcaatcaccatgtattgcttaaacttgcgtagagtactccttccaactcaaaaaatgtggaagtttttttccaccaaattacaaatcaatttccacaaagtactcaatagatccaaagtcattaagaaagccaagaatccaaatcctttatgcatcaagaaactagccccgtctcttgtctttcgagttcaattcaaaactaaacgttcaaacaataagttcaaatacaagtcgaaattcagacctactctgaaatttcacaagaaatcagcaccagtatatatagatcaacttttcattgagaatatatctgattctgtggtgaagaacaactttggccaaactagtatgattacgacaaagaagaaggagcataaacaagtttgcataacggaaaccgaacaaggtgagataatccatgaaggggaaagtagtagtagtagtagtagtgtaacgaatgatgagatgtgggaatcgttgacattggcatctccacaattgcattgtattaatgaaagagcagaagagttcatagctaaatttcgtgcagacatgctgcgtcaagagaatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="4559" stop="5984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4859" g_stop="5684" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-U341062" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4859" e_stop="5684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</genome_strand>
        <mrna_strand>CGGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320742" ref_strand="+" ref_description="SGN-U320742        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr1:24421811-24424955 REVERSE | Aliases: F1E22.4, F1E22_4(evalue: 0, score=795) genbank/nr: gi|50940759|ref|XP_479907.1| putative step II splicing factor SLU7 [Oryza sativa (japonica cultivar-group)] >gi|51979639|ref|XP_507566.1| PREDICTED OJ1163_G08.29 gene product [Oryza sativa (japonica cultivar-group)] >gi|51964654|ref|XP_507111.1| PREDICTED OJ1163_G08.29 gene product [Oryza sativa (japonica cultivar-group)] >gi|42407714|dbj|BAD08862.1| putative step II splicing factor SLU7 [Oryza sativa (japonica cultivar-group)] (evalue: 0, score=828)">
      <seq>tcgaattctaattgccggccggagagtattactatttctagggtttcgtcaatccaaatattttttggtttacagaagtaattatggctaccgcatcaggggcatttaaatctagggaggatcacaggaaacagttggaattggaagaagcaagaaaggctggtcttgctccggctgagttggacgaagatggaaaagagattaatcctcatattcctcagtatatgtcttccgctccttggtaccttaatgcagaaagaccaagtttgaaacatcaaaggaactggaaatcagaccctaattacacaaaatcatggtatgacagaggtgcgaagatatatcaggctgacaagtataggaagggtgcatgtgaaaactgtggagcaatgtcccatgacactaggtcatgtatggaaaggccacgcaaactgggagcaaaatggacagggaaacacattgctcctgatgagaagatagagcagtttgagctggactatgatggtaaaagggatcgttggaatggttatgatgctgcttcttatgcccacgtcattgaacgatatgaagcaagggatgaagcaagaaggaaatacctcaaagagcaacaacttaaaaaattggaagaaaaaaataacaaggatgacaaagaaggaggtgatagtgacaatgaggattgtgaggatgctttgaaggtagacgaagcgaaggttgatgaaagcaagcaaatggattttgccaaagttgagaagcgtgtgcggaccactggtggtggtagcacagggactgttaggaacctgcgtattcgggaggatacggctaaatatcttctcaatcttgatgtaaattcagcacactatgatcccaaaacacggtccatgcgtgaagatcctcttcctgatatggacccgaacgaaaagttctatgctggcgataaccaaaacagagttagtggtcaagcattggagttcaagcagcttaatattcatgcctgggaggcttttgataagggtcatgatgttcatatgcaagcagctccatcccaggcagaattgctctacaaaaattttaagattaacaaggagaaattgaaggtgcaaactaaggatgatgtcatggagaagtatggcaatgcagctagtgaggacacacttccaagagaactcctactgggtcaaagtgagaaagaggttgaatatgatcgtgctggtaggattgtgaagggacaggagatgtcacttcctagaagcaaatatgaagaggatgtttacatcaataaccacaccactgtttggggttcatggtggaaagatcaccaatggggttataagtgctgcaaacaaacaatcagaaatagctattgtactggtgctgctggaattgaagcagcagaagcctctgctggtcttatgaaagccaacattgctcgtaaggaggctgctgaagatacacatgtgcctgtcgaggagaagaggcaagctacttgggggactgaagtaccggaagatctgatactagaccagaaaaagctcactgaagctataaagaaggaagaggagaggagacgagaagagaaagatgaacggaagaggaaatataatgttaaatataatgatgaggttacacctgaagaaatggaggcatataggatgaagcgggttcaccaagatgatccaatgaaggacttccttcactgaatcgtagatatggccaaattgttcacctcttagggaaaacatcagttgggaccatgtgccagtcttaggtgaaattgggtatgatattttctttgtcgaaaattgtattgtgatgaagagtctgtgttgggattgcttgagatctatttcttctttgatttagtaccttaaagttgtatacaactgcatgacacactctttaagaacatatgtacaataagatacctaagaattgggaagcatctatgtacgtgtaatgtgctgtattcaccggtttgtggttgtaattcaggcaaagcctgtttgtttgaagttctttctctggttctgtattagtgtttgccttctttctgcgtttgtgtgtgtcttcagctttgtgaatgtgacagacttctaatgcattggctcattgaataaaaattctgttattccattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="13076" stop="6115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12776" g_stop="12679" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12678" i_stop="12601" i_length="78">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12600" g_stop="12437" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="263" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12436" i_stop="12355" i_length="82">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12354" g_stop="12242" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="376" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12241" i_stop="11903" i_length="339">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11902" g_stop="11489" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="790" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11488" i_stop="11379" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11378" g_stop="11243" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="926" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11242" i_stop="11151" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11150" g_stop="10851" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1226" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10850" i_stop="8632" i_length="2219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8631" g_stop="8415" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1227" r_stop="1443" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8414" i_stop="7552" i_length="863">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="7551" g_stop="7448" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1444" r_stop="1547" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="7447" i_stop="7090" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7089" g_stop="7021" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1548" r_stop="1616" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7020" i_stop="6939" i_length="82">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="6938" g_stop="6411" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1617" r_stop="2145" r_length="529" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-U320742" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>2143</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12776" e_stop="12679"/>
          <exon e_start="12600" e_stop="12437"/>
          <exon e_start="12354" e_stop="12242"/>
          <exon e_start="11902" e_stop="11489"/>
          <exon e_start="11378" e_stop="11243"/>
          <exon e_start="11150" e_stop="10851"/>
          <exon e_start="8631" e_stop="8415"/>
          <exon e_start="7551" e_stop="7448"/>
          <exon e_start="7089" e_stop="7021"/>
          <exon e_start="6938" e_stop="6411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTCTAATTGCCGGCCGGAGAGTATTA-TATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAGGTGTGCAGTTATTTTAGACCTAGCTTGTAATTTTGTGTTCGATTCATTCGTTATTTTTATAAATGTTTGGAATTTCAGGTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCAGTATGTATCTCTTCTTTATTTTGGGGCTTTATGGTTTTCATGCTCAAAATTTGACCTTTTTCAATTGTTTCGGTGTTTGCAGAGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAAGTATGTGTGTTTCCTTGCTTCTTTGGGTGTTTAAGTTTGTGTGTTTCTGTCTGTGGCATATGCTTAATTTCATTTGTCATTCATTGGCACTTAGTAGCTCATCTTGCTTGCTTTGGAGTTCAAAAGAAATCCAACTATGAAGACATTTTACTTTGGAAATTTAAATTTTGAACTTGTATGCTTGCTGCCTTCCTTAAATGTCTTGGTTCATGTGATAAGCCATTTTCTTATAAGTTCCATATGGATTTCATTAGATGCCTTGGTTCAAGTGATTAGCCATTTTCATGAAGGTTATTCAAGGAATCCTGAAAGATGAATGTACATTTGTTTTTTGTGCAGCTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAGGTAAGTTTTTCTTAATATCTTTTCTGGGTCATTATGGTGGTTAGGTTGTTGGAATTTTTCGAATATTGTGGTTGAATGCTATGCTCTATTGATGCATCTTTCATGACCAGGAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCTGTAAGTGCTCCTAATCAAAAATGGGATTTTACTCTCTCTCTATCTTTTGTTATATTTATGTTTATTAACTCATTGGTCGTTTTTCTGTTTAGGGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAGGTAACTGTTTACTTAATAGCTGCCTAAAATTGATTGGAGTACTATTCAAGTTTAGGTTTTTCTTGGGGGGTTTGCGGGGGGGGGGGGGGTAATATCTGTTGATATATTTCTATTTTTTTTAATCATTATTTGTTAAATAGATAAACACACTTTTTGTCTCAAAAAAGAAAGTGAAAAATTCTTGAGTATGTTGTCTAAATATTTGTTTGTGCCGGTGTTGGATTAGTTATATAACCAACCTAACTTGCTTGGGATTGAGGCATAGTTATAGTTTTGTATTAAATTGAGTGTCATGGATGGTTAAAGTTATAGTTGTCTGTACTTTCTCATCCCTTGGAGCAATTCTATGGGGGAGACTAGGTACTTCAAAATATTTGCATAGAACACTGATTCTTTTCGAGGATCTATTTCAGTGAAGCAATAACCTCTGTATATATTGATCAGGCTATATCATGATTCAAGTCTAGCATGAAGCATCTCCGTCTTTGAAGTTAGCCAATATATCCAAAATATAATTGCAATCTTAATACTTTTAACTGCTCTACTGTAATTTAAGATCTTTTGTTGATGCTATATCATTCCTTTGATTTTTAAGGAAAGGAACGTGTGTTCATCTAAAAACAAATGTTTCACCGAAGGGAGTTGGAATTCGGAAAGAAAGAAAAATACAAAATATTCTCCCATTGCCTCTTCTAGGGCAGCGTAACTAATTGGGGATTCAAAACTTCCCTTATCTGAATGAGGTTTTTCGAATATTTCTAATTATGTATATACATATTAATAATATCTTAACTTGTAATTAGAGTTTGTTTCTGTTGTTTTTGAACATATAAATTACAATATTTTCTTTGATGTAAGTTTGAACCAAAAGATAGATTGGTTGATCCTCGTCGAACCTCGTCAATCTTTCTGGGAGGGACGGTGTAGATTATACATGTATTTTTGGTGACAGTAGTGGACTACTACCATTCAAAGGCTGGATCAAGATAGTATGTCATAAGAATATAAAATTAACCTCTTTCAAAATCATGTCCTAAATAGACATCTATTCAGTTGCTGCTGCCCCTGATGTATATAGTGGTAAATCAAATTTTAAAGCTGCTTTTCAGTTGTCTGTAATAATCACAACAAAAATGACGCCTAAATTTTGAACTAGTTGGGGTTGGCTGAATGGATTCTCTACGTCATGCTGCTCTACTGGACATAGTTTACTCATTCACTGACCATCATCACCACTTCCCTCTGAAGGTGTGTAACTGTCGAATTGAAAGGGAAGACTAGAAATGAAGTGAATGGAAGAGGGATAGCATGAAGGTTTATATATATATACTGTAAAAGAAAAATTCTAAAACTAGATTCTTTTGTATTTAGCTTGTATGGTCTAGAACTAAGCTCCACCACTGACTGGAATGGGGAAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTTTCAAGCGAAGATTTAAAAAAAAACATGTACACTAGGTTGAAGTGGTGTTTTTGACTACTAACATAATGGTAAAATTAAGTCTGTTAGGTGTCGTTTGGTTTGAAGACAAGTTATGTGGGGACTAATTATCTTATAAGTTATGATGAGATTTAATTTTTATTGGTTGTTTGGTTTGTCAAATATGCTTGGCATAATTTTTTAGAATAAGTTGTTTGGTTACAAAAATGCCCTCTTAAGAATAAGTTTGTTTATAAAAGAGGGTTTAAGGGGTACTTCTGTTATTTAACATCTTTACCTGGGATACGTTATTCCGTGATTATTGTTTCACCCACAAGTAGTGATAACTTATCCCAGTCATAATTATTGATCCTGGGATAGTTTTTCCAACACTTCGTTATCAAATAATGAATTTAGGGGTACTAAAAACTTATCCCGAGATTATTTTCTTTATCCATCACACCAAATGACCCCTTAAGGTCTCAATTTTCCTTTTACATAAGGATAAACAATTAACTTGGATTTATTGAAGGCAATATTTTTTGATGTGCCATTTATTGTCTGAGAGAGATGATAGTTGTTCCTACTTATGGAACGGGGTTCGGAGTTCTTAGCTTGTTCAGTCTATTTGTCAAGTTCTATGTTTTCTTTTGTGCATAAATGACGAAGAATTATTTGTATTCGAATAGATGGAAGGGAGTGTGCAGTCAAATATTTCCGTCATACTTGTTTGTTTCTATTGCCTAATTCAGTAACTTGGTATCTGCAGGAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAGGTATATTGAAACTGCTGACATGTCTCGAAATTATCATACACCGCTTCCATAACAATCTTACTGTCATAATTCAATGTAGTTTGCTTTAAGATCTTATACCTGCTAATTTTAAGCTCACAACCTTCTGCTGAGTAGTCAGAAAGTAATTGTTTTCCGTACATGTTGTTGGAAGTTGTACTTCAACTCTTGCATTAGTGGTTTTGTCAGTACCTGTCATTGTTTTACGGATCAAATAAGTAATTTCCATTGTTTGCACGCCCTATAGAACTAGAATTGTCTCTTTTTTTGAAAAAAATGAAGTAATAGATTTTATAGGTGCATCAAGAAAATGCAATGAGTACAGATGATAGTAAGTACAAAGGAGAATTTGCTAGCTCCATTACATGAGGTTCTATGCTAGAGATATGTAGCGTAGAACTAGAATGTCTTGGATTTGGTGATGGTAAGGTTTTCTTGGATTTAGAAGAAAAATGATCCTTTTGGTGTTTAGAAGAAGAATGATGGATCAGTTTATCGGTAAACATATTCATGATCAGGATAGAGCATATGGACCTTTGGACCTTTTTTAGCTTTCTGTTGAAGTGGTAAGCATGAACTCTAGGGTTTTAGTGATTACAAACATAACGTCTACATTTCGAGACCATCTACTTAGCTTTGAATTTTTAGTGGATAGCTCCTTGGTTTCTGCTTGAATTAGCAGTCAGTTTAAACTTCATCTTATTTAATGTAAGAGTTGGCCAGCAGAGCTGCTGAGAGGATTGTTTCATTGAAGACCATATCAAGCACAATCAAAGCACATTTTTGGCAACTGTTTCTTCAGTAATTGATAACATTGTTTTTCTTTTTCTCAATATCTGATCCAGATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAGGTATGCATATAAACCTATGCATGGTGCTACCTCCGTTTTTGAACTTCATGCTAATATGAATTTTGTCAGTGTATTTCCTGCTTCAAGTAATTTATTTTTTAGGAGGGAATAGTTGGTGAGGGTAGAGTTTTGGGGGTTGATGCGTGGAGATATCCAACACCACCACCAAAGAAAAAAGGAGAGAGACGCTTAGAGGAGGTGGGGAGAGATGTTTCATAGGGGACTGCCAGAGGTTGGGGTTGGGAACACTGATAACCTGACTGGATCCGTTCTTTTGACAGCTATGTCGATTCTCAGTTGTCTCTATAGCTTCTGTTTTTCTGATGTTCTGATCAAATTTATTTTGCTTTTTGAACAGGAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAGGTACATCTATGTCTCCATTTTGTCTTTCTGATGGTGGTTGTCTTCTTCTTCATGGTCTTTCTAACAACATTTATCTGTACAGGTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTTGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCATGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAATGTGCTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGCCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTACTGTTTGCCTTCTTTCAGCG-TT-TGTGTGTCTTCAGCTTTGTGAATGTGACAGATTACTAATGCATTGGCTCATTGAATAAAAAATTCTGTTGTTCCATTCAACGATCAAAATTGA</genome_strand>
        <mrna_strand>TCGAATTCTAATTGCCGGCCGGAGAGTATTACTATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAG..............................................................................GGGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCA..................................................................................AGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAA...................................................................................................................................................................................................................................................................................................................................................CTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAG..............................................................................................................GAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCT............................................................................................GGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAG......................................................................................................................................................................................................................................................................................................................................................................GAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAG..................................................................................GTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTTGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCATGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAATGTGCTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGCCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTAGTGTTTGCCTTCTTTCTGCGTTTGTGTGTGTCTTCAGCTTTGTGAATGTGACAGACTTCTAATGCATTGGCTCATTGAAT-AAAAATTCTGTTATTCCATTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340019" ref_strand="+" ref_description="SGN-U340019        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:8287011-8288796 REVERSE | Aliases: None(evalue: 4e-25, score=112) genbank/nr: gi|42572899|ref|NP_974546.1| expressed protein [Arabidopsis thaliana] (evalue: 3e-23, score=112)">
      <seq>cggtttcttcatctcccacaaaatttcaatggaagccgaagggcaacgaacatcctccaatccctcggcagtgctcgctactctcttgtcaaaaagagctaaacttcacgaagatctacggaacctcgaaaaacaggtttatgacatggagactatttacctacaggatcctagccaatgtggaaatgtactaaaagggtttgaagggtttttatcttcctccaagagtaccagcttcttgaaacggtccaggaagtttcaacctgaagataggctcttttctttatcgtccgtcacctcaccggcagctgaggaacaagctcttggtcgggatggtggaggcatatctgccaatgttcaaggtagacaaaggaagggcaggggaggtccaagagatgcaaagagaatgaggcattcaagtgaaccagactatgactatgaagatgatccagatctaatgtaatttggactctggtgaaacggtaggtttgtcgattttggaatgataaaattgtcgattttgacatgtacaaatatatttggcggcctagaattgtatttctttagtatcggcggacatcagattaaaaagatattgtatcacagtgcatatttttctctgttgctattatatatagtaagtagtatatgtttttgaccncctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="14425" stop="18820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14725" g_stop="14765" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14858" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14859" g_stop="14953" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="136" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14954" i_stop="15028" i_length="75">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15029" g_stop="15129" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="237" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15130" i_stop="16742" i_length="1613">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16743" g_stop="16812" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="307" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16813" i_stop="18027" i_length="1215">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18028" g_stop="18080" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="360" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18081" i_stop="18218" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18219" g_stop="18520" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="662" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="687"/>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-U340019" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14725" e_stop="14765"/>
          <exon e_start="14859" e_stop="14953"/>
          <exon e_start="15029" e_stop="15129"/>
          <exon e_start="16743" e_stop="16812"/>
          <exon e_start="18028" e_stop="18080"/>
          <exon e_start="18219" e_stop="18520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCTTCATCTCCCACAAAATTTCAATGGAAGCCGAAGGTAAACCCTCGGTTCAACCCTATTTGTCTTCTTTCTTCCTAATTTTTGCTTAACAAATATGTTCAACTATGTCTGTCACGTAATCCATTTTAGGGCAACGAACATCCTCCAATCCCTCGGCAGTGCTCGCTACTCTCTTGTCAAAAAGAGCTAAACTTCACGAAGATCTACGGAACCTCGAAAAACAGGTCAACAAATTTCTGGGGTTTGTGTTTTATGTTTGGTTTCAACATTGATTCCCTGAAATTCTAACTGACTTGCAGGTTTATGACATGGAGACTATTTACCTACAGGATCCTAGCCAATGTGGAAATGTACTAAAAGGGTTTGAAGGGTTTTTATCTTCCTCCAAGAGTACCAGCTTGTAAGTTTTAAATGAGACCTAGGGTGGCTGTGATATTGCAATGAGTTGCGTCTGAATAGAGCAGAATGATGAATGCATGCATAGAATTTATTTACCTGACCCTAACTAGTGCCGAATTAAGCTTAGTTGTTTCATTTGACCTTGTTTTTTAGGATAAAGCAATGCATATAATTGTATATTGTTGATGACTTGGTTTTGAGAAATGGATGTAGGTCTTGATGTACTCTAGTGCTTCTTGAGTGGATTGCTTTCCTAGTGTGGTATGTTTGGAGGTAAGGATTTCAAAGAGAAATGGCGAGAGTGGAGACTAACAATCATGCTGATTTAGCATTTATGATGATACAAGCCTATTCTCTCTCCACTTTCTGTTCCTTCTTAAGAAGTAAGAAAACCCTCTGCTGTCAAGAGAATAATGTAGTCCCATAATTTGCTGAAGTTGATGTAAGTAATTATATCGCAATTTATTATGATGATACTATGGACAAGTAAATTTGTGTTCACAAATTACAAGTGGTTAAGTTACTTGCACATTCATGGAAGGTGTATAATAGGAAAGACTAAAAGCATACGGTTGGTACGGGACAAGATTTTGATAGCCAATGTTCTGTGATGGATGTGGGCAAGAAGGTAGAATACATCCAAATTACTTTTGGCATTTTGCTTTTGCTTAGTAAAATGTAATTGTGTATATTTACGCAAAGGCAGTAAAAGTTCATCAATGATGTAAATGAGCTAGCTTTGTGTCATTGTCTCACCTTGTGAGACTCATTTTTTAAAGGCTTAGTTCTGCTGCCCCTCTCTGTCTTATCTCCTTTGTTTTTCGAAGAAGACGCATGGAAGAGTATTAATCACGTTGTAAGTGTGTGAATAACAACAGTTGCAATTCATTTTCATCACGGAGCTAAATTCTACAAGATGAGAGTACCGAAGAACTTTTTAGACTTTCGTATAAACCCAATGTTGTTGACATTTTAGTTGGGCTGATTGTGCTGAATAGATCCACGTGATTAAGCGTTTCAGTTGTTCGTAAAATTATAATTCCTGTATCCAAGGGGATGGACTAGTAGTGAAGGGAGGTCCCAGGTTCGAATTGCAGTTATAACACTTAGTGTGAGCCCATCCTCCTGTTTGGTTGGCCGGAATGCTTTGCAATACGTTGTGGGTTGGACAGTTTGTCCAGTGGATTAGCTGAAATGCATTCAAGTTGAAATTGACACCACTAATATAAGGATCCTTCCCTGCATCCTATTTTTTGTTATTTACTTTGACTCACATAACTATTACGAGAAGAGTTGGAGAAGCGAGTTGGTTAGTGGTTGTCGGGGACTTGGAGGAACATGTAGACCACATATTTACTTCAGTGTTTTGGGAATATCATATAGTAAAAGTAATAAACATCTATTTGATGTTAGAAATGTTATTGAAACTGCTGTTCCTAAGAAATAGAAGAGTATCATCATTAGTTTATTCCATTAATGGTCTGGTAATATAATGATGATTTTAAAAATCTACTCAATCACTCTCTTTAGGTTTCAATTTTCCGGCCTAAACTTAAGGTTCGCCTATATGTTTATTTATTGAAATTAGCCTTTTTCTTTTTAATTATTTTGCAGCTTGAAACGGTCCAGGAAGTTTCAACCTGAAGATAGGCTCTTTTCTTTATCGTCCGTCACCTCACCGGCAGTATGTATTTTTCTGTATTTCTCAGCAAGGGGAAACACTTGAATGCTGTTGATGGATGTATATCTTATGATCTTATACACTGGGAATCATATCAGAGTTTCTGTTCATGGCATGCAAATTTAGTTTGTCTCTTAAGTTTATGTCTGTTATTTTGCAAGATCATATGCTCTGTTCCCTGTTGTACAATGGTGCCCTTTGTTTCTTGTTAAGATTTATACTGAACATAGTACAATAGCTAATACATTATAATCCATTTACTGTCCTGTCTCCATCTTTTAAATGTCTAGAGATTGTGAGGCAAGTTAGGGCGCCCAATATGAATGTCAAGAAGATTTATTAAAGCTGACTAAAGCTAAAAATTCTTGATAAGGGGGCAACACTAGCAAGGTGTTCAGTTGGTCAGCACTCGTCTTTGACCACCTTCTTGGTTTATAGTCCTGTTTCAAGATAGAGATCTTAGCCCATTCTGTTGAATTATAATGCGAAATTCTCCCTTTAGAACCCTGTAAAAGGATAGGAAAAAAAGAGAGAGCATCAAATAAATGGAAAAAGGAAGGAATGTAGTAGAGAAGGATTCAATTTCCAAATGAATCACCAGAGAAGTAGATTAAGGGGAACAAGTTCCATTTGAGTGGGTAAGCAGTGGTTAAGGTGTAAAGGCAGTTTGAGCTTGTTTTTGGTTGTAAAAGACTGGGTTAAACATAAGTAGAGTGGAAAAGAAACAGATAGGGCTCTGCCAATTACCAAGCATTGAACTAGAAGCTCCCATCTGTATTAGAACCCCACCTTTTGAGTGTTCTCAAAGCTTTGCCAATAAATGGAGCACTAAACAAAATGATATTTACGTTAATTTTGCTTGGAAATAGCTCAGGTTGCATTCGGAAGATGTTGTGACGTAGTTGCTGGTTCTCATGTATATTATTGCCTTCCATCTATCCTTTAAATTACAATGTGCTGAAACCTCGCGTAGAAACTTAAATTGCACTTTCTGGAATCTCTCCTTGTAAACCCCTTGATAGTCTCCATCCAAAAAAGACCATAGGTAAAAAAGATAATTAAGCAACTCCTGCCATGGTCTATCATGTTCCCATCTACTTCAGAGTTGAACGATGGTCGTGGAATGACACCTTAATGCATATTTCATCCAACATGAAGTTGTAGTGCTACTTACATAATTCAAAGAACATGAAAGTAGCATTTTTTGCATATTTTCAGGCTGAGGAACAAGCTCTTGGTCGGGATGGTGGAGGCATATCTGCCAATGTTCAGTAAGTTGTGAATATTATCCTATAACTACTTTTGTTGGAGGAGTAAAATAGATAGTTCCACAACTTTTTCTCTTATCGGCAATTGATTTTTCAAGTTCTAATACAATAGACTACCCTGTTTGTTGGCTGTTTCTCCAGAGGTAGACAAAGGAAGGGCAGGGGAGGTCCAAGAGATGCAAAGAGAATGAGGCATTCAAGTGAACCAGACTATGACTATGAAGATGATCCAGATCTAATGTAATTTGGACTCTGGTGAAACGGTAGGTTTGTCGATTTTGGAATGATAAAATTGTCGATTTTGACATGTACAAATATATTTGGCGGCCTAGAATTGTATTTCTTTAGTATCGGCGGACATCAGATTAAAAAGATATTGTATCACAGTGCATATTTTTCTCTGTTGCTATTATATATAGTAAGTAGTATATGTTTTTGACCAC</genome_strand>
        <mrna_strand>CGGTTTCTTCATCTCCCACAAAATTTCAATGGAAGCCGAAG.............................................................................................GGCAACGAACATCCTCCAATCCCTCGGCAGTGCTCGCTACTCTCTTGTCAAAAAGAGCTAAACTTCACGAAGATCTACGGAACCTCGAAAAACAG...........................................................................GTTTATGACATGGAGACTATTTACCTACAGGATCCTAGCCAATGTGGAAATGTACTAAAAGGGTTTGAAGGGTTTTTATCTTCCTCCAAGAGTACCAGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAACGGTCCAGGAAGTTTCAACCTGAAGATAGGCTCTTTTCTTTATCGTCCGTCACCTCACCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGGAACAAGCTCTTGGTCGGGATGGTGGAGGCATATCTGCCAATGTTCA..........................................................................................................................................AGGTAGACAAAGGAAGGGCAGGGGAGGTCCAAGAGATGCAAAGAGAATGAGGCATTCAAGTGAACCAGACTATGACTATGAAGATGATCCAGATCTAATGTAATTTGGACTCTGGTGAAACGGTAGGTTTGTCGATTTTGGAATGATAAAATTGTCGATTTTGACATGTACAAATATATTTGGCGGCCTAGAATTGTATTTCTTTAGTATCGGCGGACATCAGATTAAAAAGATATTGTATCACAGTGCATATTTTTCTCTGTTGCTATTATATATAGTAAGTAGTATATGTTTTTGACCNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320157" ref_strand="+" ref_description="SGN-U320157        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | actin-depolymerizing factor 6 (ADF6), identical to SP:Q9ZSK2 Actin-depolymerizing factor 6 (ADF-6) (AtADF6) {Arabidopsis thaliana} | chr2:13301130-13302487 FORWARD | Aliases: F16D14.4, F16D14_4(evalue: 4e-55, score=211) genbank/nr: gi|18874466|gb|AAL79826.1| actin depolymerizing factor [Vitis vinifera] >gi|32363121|sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor (ADF) (evalue: 4e-60, score=234)">
      <seq>tcatattcctctttttttcttcctctcaaggctcattttaatttttattttgctcttctcatgtctttcaaattcagagggccaaatgcttcttctggaatgggtgtggctgatcacggcaaaaatgcattcttggagttgaagaggaagaaagttcatagatacgtgattttcaaaatcgatgaaaagaaaaaggaggttgttgttgagaaaactggcagccctgctgaaacctttgatgactttactgcttctttgccagaaaatgattgccgatatgcggtgtatgactttgattttgtgacttctgagaattgccaaaagagcaagatattctttgttcattggtctcctgcaacatctcgtattcgtgcaaagatgctttacgccacctctaaagacgcatttaaaagagagctcgatggttttcattatgagattcaggctactgatccaacagaagttgatcttgaagtgctgaaagaccgtgctcactgagccatcttgcaataaacactatgtttccagctaagcatttagcttgttagtgtatatggtgttggtatttgttttgcttttttctcagatgtttgaacacttgggaacctgcataataatataatatcagtggttgccaattttctaattgtggactatacaagtgtagaattcatgatttgtcctctcttatcctatttcagctaaggattatgaatataaatatgtctttcgttagaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="+" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="19206" stop="21947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19506" g_stop="19586" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20209" g_stop="20474" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="347" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21254" g_stop="21647" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="741" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="+" ref_id="SGN-U320157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19506" e_stop="19586"/>
          <exon e_start="20209" e_stop="20474"/>
          <exon e_start="21254" e_stop="21647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTATTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGGGTATATTATCTATCTTTAATTTTGTTTTGTTCATCTAAGTCTTTGATCAATTTGTATGTTATGTTCACTTTTTAATTTTGAATTTATGTTGCAGTCCCTTAGGAATATCTGATCATTATGACAACCAACTTATCATGTTATAAGGGCTGGGTACATCTTCCAACTAGGATAATTGAACATAAAAATGAAACAGAGTTATGTGGTGGTGTCTCTAGCTATTCCTCCTGGGTAGTAGCTGATATCCGATGGAATAGTCCAGGCGCTTTAAATCTAAGTTGGCTTAATAAAAAGAAAAATGTCAATTTGAAAAGTTATATTAGTTTTCTTAGCTAACGGTTTGATCATAAATTTTGAGAGTATGCTTTTGAAATATTGTAATCAGATTTTGGAAATATGATCTTAAAATATTTTTGACTAATGTAAACCAGTTTTTGGGACTTTCACTCACAAAACTTCAAATTTTTTTCAAGTAAAATCCATGTCCAAACAGAACTTTAAAAAGCTATGTCCAAACCGGAACTCAGTGAAGCACTAAATTATTGTGTACTTGAAACCCTCAAATTATATCTCTGTTTTCATGTGAAGTATTGACACTGGACTGGATTTTTTCCTTGAGTTTCAGCCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTGGTTAGTCTCCCACCTCCTTGTGCATATTTTCATCTGTGTGTGATTGCAACTATTGTTTGATTTTTTAATTTGCTGGTTTCACCAATGCCCCAAGCATTTCTTGAAAAACTAGACGAGTTGTACACCAGCTTGGTTTTCCTGTAGCTTCCTTCCACGACGTGGAAGTGAAGGACGAAGAAGGTAGAAATTTGTCATCCCATTGAAAGATAGAGATGTAAAAGGAACATTTTTTGATCCTTATGTCCTGTTATGTATGACTTGATCATTTAAGGACTAAACAACTTGTTTCTTGAATCACAATTGTTAAGCATTTTCTATGTAGTTTACTAGTCCTGTTCTTTCGTTGTCTTCTTCATCGAAAGAACATTTTGCCTCATGACCAGGTAAATAACTTTTTAGTATATCATTTGTCAGAGAGATTTCTTTTCAATGTCAAAATGTTTGTCTCTTCCAAATGCAAAAAGAAATCAATTTGGTTGTATTTTTTAATCACATCTTACTCTCATTTTACGAAAATAGATTATGCATTTATTCTCAGGTCTCTGTAGCAAACTCCCAATGCTAGTCTTTAGGAAGCAAAATTTTGAGAATGCTTCTACTGTTTTGCCTTTGCCTCTGTATGCGTTTGCTTGATTTCGACATATCATTTTAGTTGAAAAATCAATTTCATGGCACGTATAATGGGATTGATGTGCAAGTCCAGCATCTCAGAGAACTATAAGTAACACTTCAAACTTTTTCCTTCTCACATTCTCAGTGCATTACTTTTGTTTCCTTAGGTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCA</genome_strand>
        <mrna_strand>TCATATTCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTATTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320156" ref_strand="+" ref_description="SGN-U320156        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | actin-depolymerizing factor 6 (ADF6), identical to SP:Q9ZSK2 Actin-depolymerizing factor 6 (ADF-6) (AtADF6) {Arabidopsis thaliana} | chr2:13301130-13302487 FORWARD | Aliases: F16D14.4, F16D14_4(evalue: 8e-16, score=80.5) genbank/nr: gi|34897072|ref|NP_909882.1| putative actin-depolymerizing factor [Oryza sativa (japonica cultivar-group)] gi|12957717|gb|AAK09235.1| putative actin-depolymerizing factor [Oryza sativa (japonica cultivar-group)](evalue: 6e-17, score=90.1)">
      <seq>aagaaacaaagttcccaagtgttcaaacatctgagaaaaaagcaaaacaaataccaacaccatatacactaacaagctaaatgcttagctggaaacatagtgtttattgcaagatggctcagtgagcacggtctttcagcacttcaagatcaacttctgttggatcagtagcctgaatctcataatgaaaaccatcgagctctcttttaaatgcgtctttagaggtggcgtaaagcatctttgcacgaatacgagatgttgcaggagacctaaggaaacaaaagtaatgcactgagaatgtgagaaggaaaaagtttgaagtgttacttatagttctctgagatgctggacttgcacatcaatcccattatacgtgccatgaaattgatttttcaactaaaatgatatgtcgaaatcaagcaaacgcatacagaggcaaaggcaaaacagtagaagcattctcaaaattttgcttcctaaagactagcattgggagtttgctacagagacctgagaataaatgcataatctattttcgtaaaatgagagtaagatgtgattaaaaaatacaaccaaattgatttctttttgcatttggaagagacaaacattttgacattgaaaagaaatctctctgacaaatgatatactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0014B18-oNQB0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0014B18.1" temp_strand="-" temp_description="C09SLe0014B18.1  AC233065.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0014B18 upload_account_name:spain (1 - 87454)">
        <position start="21814" stop="20569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21512" g_stop="20869" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="654" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0014B18.1" gen_strand="-" ref_id="SGN-U320156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0014B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21512" e_stop="20869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCAAGTGTTCAAACATCTGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTTGGAAGAGACAAACATTTTGACATTGAAAAGAAATCTCTCTGACAAATGATATACTAAA</genome_strand>
        <mrna_strand>GTTCCCAAGTGTTCAAACATCTGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTTGGAAGAGACAAACATTTTGACATTGAAAAGAAATCTCTCTGACAAATGATATACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1670" PGL_stop="537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1670" e_stop="1102"/>
            <exon e_start="732" e_stop="537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="1670" e_stop="1102" e_length="569"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1101" i_stop="733" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="732" e_stop="537" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1670" stop="1102"/>
              <exon start="732" stop="537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA : GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</gDNA_template>
            <first_frame> N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E :   E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E  *  A  * </first_frame>
            <second_frame>  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V   : R  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R  N  E  H   </second_frame>
            <third_frame>   S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  :  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  M  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1670" stop="1102"/>
                    <exon start="732" stop="696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQLVINNKNSLAMAVSTRVLLALLFSAFLLSAANAYRQYPFQQGQHGQRSIPLTQAQQCRLQRLTGSQPSQRIESEGGYTEVWDENEEQFQCVGVAPMRNVIRQNSLSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEYKKLVEGKLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4859" PGL_stop="5684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4859" e_stop="5684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="4859" e_stop="5684" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4859" stop="5684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</gDNA_template>
            <first_frame> L  F  L  R  N  R  K  Q  N  G  H  K  S  A  E  K  K  R  I  L  *  T  T  *  F  L  S  S  F  C  T  K  L  *  R  K  I  *  A  S  E  F  I  L  L  H  Q  *  L  *  L  L  V  Y  Y  Y  *  Y  Y  L  Y  I  L  Y  L  S  L  L  L  Y  F  S  P  Y  S  *  L  N  L  H  C  F  K  F  N  H  H  V  L  L  K  L  A  *  S  T  P  S  N  S  K  N  V  E  V  F  F  H  Q  I  T  N  Q  F  P  Q  S  T  Q  *  I  Q  S  H  *  E  S  Q  E  S  K  S  F  M  H  Q  E  T  S  P  V  S  C  L  S  S  S  I  Q  N  *  T  F  K  Q  *  V  Q  I  Q  V  E  I  Q  T  Y  S  E  I  S  Q  E  I  S  T  S  I  Y  R  S  T  F  H  *  E  Y  I  *  F  C  G  E  E  Q  L  W  P  N  *  Y  D  Y  D  K  E  E  G  A  *  T  S  L  H  N  G  N  R  T  R  *  D  N  P  *  R  G  K  *  *  *  *  *  *  C  N  E  *  *  D  V  G  I  V  D  I  G  I  S  T  I  A  L  Y  *  *  K  S  R  R  V  H  S  *  I  S  C  R  H  A  A  S  R  E  Y  V  </first_frame>
            <second_frame>  C  F  *  E  I  E  N  K  M  D  I  S  L  L  K  R  N  A  F  F  K  L  P  N  F  C  P  L  F  A  L  N  Y  S  V  K  F  K  P  V  N  L  Y  Y  Y  T  N  D  Y  N  Y  *  S  T  T  T  S  T  I  Y  I  S  Y  I  S  A  F  C  Y  I  S  P  L  I  H  N  *  I  C  I  V  S  N  S  I  T  M  Y  C  L  N  L  R  R  V  L  L  P  T  Q  K  M  W  K  F  F  S  T  K  L  Q  I  N  F  H  K  V  L  N  R  S  K  V  I  K  K  A  K  N  P  N  P  L  C  I  K  K  L  A  P  S  L  V  F  R  V  Q  F  K  T  K  R  S  N  N  K  F  K  Y  K  S  K  F  R  P  T  L  K  F  H  K  K  S  A  P  V  Y  I  D  Q  L  F  I  E  N  I  S  D  S  V  V  K  N  N  F  G  Q  T  S  M  I  T  T  K  K  K  E  H  K  Q  V  C  I  T  E  T  E  Q  G  E  I  I  H  E  G  E  S  S  S  S  S  S  S  V  T  N  D  E  M  W  E  S  L  T  L  A  S  P  Q  L  H  C  I  N  E  R  A  E  E  F  I  A  K  F  R  A  D  M  L  R  Q  E  N  M  L </second_frame>
            <third_frame>   V  F  K  K  *  K  T  K  W  T  *  V  C  *  K  E  T  H  S  L  N  Y  L  I  F  V  L  F  L  H  *  T  I  A  *  N  L  S  Q  *  I  Y  I  I  T  P  M  T  I  T  T  S  L  L  L  L  V  L  F  I  Y  L  I  S  Q  P  F  V  I  F  L  P  L  F  I  T  E  F  A  L  F  Q  I  Q  S  P  C  I  A  *  T  C  V  E  Y  S  F  Q  L  K  K  C  G  S  F  F  P  P  N  Y  K  S  I  S  T  K  Y  S  I  D  P  K  S  L  R  K  P  R  I  Q  I  L  Y  A  S  R  N  *  P  R  L  L  S  F  E  F  N  S  K  L  N  V  Q  T  I  S  S  N  T  S  R  N  S  D  L  L  *  N  F  T  R  N  Q  H  Q  Y  I  *  I  N  F  S  L  R  I  Y  L  I  L  W  *  R  T  T  L  A  K  L  V  *  L  R  Q  R  R  R  S  I  N  K  F  A  *  R  K  P  N  K  V  R  *  S  M  K  G  K  V  V  V  V  V  V  V  *  R  M  M  R  C  G  N  R  *  H  W  H  L  H  N  C  I  V  L  M  K  E  Q  K  S  S  *  L  N  F  V  Q  T  C  C  V  K  R  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5091" stop="5684"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIVSNSITMYCLNLRRVLLPTQKMWKFFSTKLQINFHKVLNRSKVIKKAKNPNPLCIKKLAPSLVFRVQFKTKRSNNKFKYKSKFRPTLKFHKKSAPVYIDQLFIENISDSVVKNNFGQTSMITTKKKEHKQVCITETEQGEIIHEGESSSSSSSVTNDEMWESLTLASPQLHCINERAEEFIAKFRADMLRQENML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12776" PGL_stop="6411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12776" e_stop="12679"/>
            <exon e_start="12600" e_stop="12437"/>
            <exon e_start="12354" e_stop="12242"/>
            <exon e_start="11902" e_stop="11489"/>
            <exon e_start="11378" e_stop="11243"/>
            <exon e_start="11150" e_stop="10851"/>
            <exon e_start="8631" e_stop="8415"/>
            <exon e_start="7551" e_stop="7448"/>
            <exon e_start="7089" e_stop="7021"/>
            <exon e_start="6938" e_stop="6411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.711" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="12776" e_stop="12679" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.711" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12678" i_stop="12601" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="12600" e_stop="12437" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12436" i_stop="12355" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12354" e_stop="12242" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12241" i_stop="11903" i_length="339"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11902" e_stop="11489" e_length="414"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="11488" i_stop="11379" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11378" e_stop="11243" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11242" i_stop="11151" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11150" e_stop="10851" e_length="300"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10850" i_stop="8632" i_length="2219"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8631" e_stop="8415" e_length="217"/>
          </exon>
          <intron i_serial="7" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8414" i_stop="7552" i_length="863"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7551" e_stop="7448" e_length="104"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7447" i_stop="7090" i_length="358"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7089" e_stop="7021" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7020" i_stop="6939" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="0.968">
            <gDNA_exon_boundary e_start="6938" e_stop="6411" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12776" stop="12679"/>
              <exon start="12600" stop="12437"/>
              <exon start="12354" stop="12242"/>
              <exon start="11902" stop="11489"/>
              <exon start="11378" stop="11243"/>
              <exon start="11150" stop="10851"/>
              <exon start="8631" stop="8415"/>
              <exon start="7551" stop="7448"/>
              <exon start="7089" stop="7021"/>
              <exon start="6938" stop="6411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAATTCTAATTGCCGGCCGGAGAGTATTATATTTCTAGGGTTTCGTCAATCCAAATATTTTTTGGTTTACAGAAGTAATTATGGCTACCGCATCAG : GTGCATTTAAATCTAGGGAGGATCACAGGAAACAGTTGGAATTGGAAGAAGCAAGAAAGGCTGGTCTTGCTCCGGCTGAGTTGGACGAAGATGGAAAAGAGATTAATCCTCATATTCCTCAGTATATGTCTTCCGCTCCTTGGTACCTTAATGCAGAAAGACCA : AGTTTGAAACATCAAAGGAACTGGAAATCAGACCCTAATTACACAAAATCATGGTATGACAGAGGTGCGAAGATATATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAA : CTGTGGAGCAATGTCCCATGACACTAGGTCATGTATGGAAAGGCCACGCAAACTGGGAGCAAAATGGACAGGGAAACACATTGCTCCTGATGAGAAGATAGAGCAGTTTGAGCTGGACTATGATGGTAAAAGGGATCGTTGGAATGGTTATGATGCTGCTTCTTATGCCCACGTCATTGAACGATATGAAGCAAGGGATGAAGCAAGAAGGAAATACCTCAAAGAGCAACAACTTAAAAAATTGGAAGAAAAAAATAACAAGGATGACAAAGAAGGAGGTGATAGTGACAATGAGGATTGTGAGGATGCTTTGAAGGTAGACGAAGCGAAGGTTGATGAAAGCAAGCAAATGGATTTTGCCAAAGTTGAGAAGCGTGTGCGGACCACTGGTGGTGGTAGCACAGGGACTGTTAG : GAACCTGCGTATTCGGGAGGATACGGCTAAATATCTTCTCAATCTTGATGTAAATTCAGCACACTATGATCCCAAAACACGGTCCATGCGTGAAGATCCTCTTCCTGATATGGACCCGAACGAAAAGTTCTATGCT : GGCGATAACCAAAACAGAGTTAGTGGTCAAGCATTGGAGTTCAAGCAGCTTAATATTCATGCCTGGGAGGCTTTTGATAAGGGTCATGATGTTCATATGCAAGCAGCTCCATCCCAGGCAGAATTGCTCTACAAAAATTTTAAGATTAACAAGGAGAAATTGAAGGTGCAAACTAAGGATGATGTCATGGAGAAGTATGGCAATGCAGCTAGTGAGGACACACTTCCAAGAGAACTCCTACTGGGTCAAAGTGAGAAAGAGGTTGAATATGATCGTGCTGGTAGGATTGTGAAGGGACAG : GAGATGTCACTTCCTAGAAGCAAATATGAAGAGGATGTTTACATCAATAACCACACCACTGTTTGGGGTTCATGGTGGAAAGATCACCAATGGGGTTATAAGTGCTGCAAACAAACAATCAGAAATAGCTATTGTACTGGTGCTGCTGGAATTGAAGCAGCAGAAGCCTCTGCTGGTCTTATGAAAGCCAACATTGCTCGTAAGGAGGCTGCTGAAG : ATACACATGTGCCTGTCGAGGAGAAGAGGCAAGCTACTTGGGGGACTGAAGTACCGGAAGATCTGATACTAGACCAGAAAAAGCTCACTGAAGCTATAAAGAAG : GAAGAGGAGAGGAGACGAGAAGAGAAAGATGAACGGAAGAGGAAATATAATGTTAAATATAATGATGAG : GTTACACCTGAAGAAATGGAGGCATATAGGATGAAGCGGGTTCACCAAGATGATCCAATGAAGGACTTCCTTCACTGAATCGTAGATATGGCCAAATTGTTCACCTCTTAGGGAAAACATCAGTTGGGACCATGTGCCAGTCTTAGGTGAAATTGGGTATGATATTTTCTTTGTCGAAAATTGTATTGTGATGAAGAGTCTGTGTTGGGATTGCTTGAGATCTATTTCTTCTTTGATTTAGTACCTTAAAGTTGTATACAACTGCATGACACACTCTTTAAGAACATATGTACAATAAGATACCTAAGAATTGGGAAGCATCTATGTACGTGTAATGTGCTGTATTCACCGGTTTGTGGTTGTAATTCAGGCAAAGCCTGTTTGTTTGAAGTTCTTTCTCTGGTTCTGTATTACTGTTTGCCTTCTTTCAGCGTTTGTGTGTCTTCAGCTTTGTGAATGTGACAGATTACTAATGCATTGGCTCATTGAATAAAAAATTCTGTTGTTCCATTCAACGATCAAAATTGA</gDNA_template>
            <first_frame> S  N  S  N  C  R  P  E  S  I  I  F  L  G  F  R  Q  S  K  Y  F  L  V  Y  R  S  N  Y  G  Y  R  I  R :   C  I  *  I  *  G  G  S  Q  E  T  V  G  I  G  R  S  K  K  G  W  S  C  S  G  *  V  G  R  R  W  K  R  D  *  S  S  Y  S  S  V  Y  V  F  R  S  L  V  P  *  C  R  K  T   : K  F  E  T  S  K  E  L  E  I  R  P  *  L  H  K  I  M  V  *  Q  R  C  E  D  I  S  G  *  Q  V  *  E  G  C  M  *  K  :  L  W  S  N  V  P  *  H  *  V  M  Y  G  K  A  T  Q  T  G  S  K  M  D  R  E  T  H  C  S  *  *  E  D  R  A  V  *  A  G  L  *  W  *  K  G  S  L  E  W  L  *  C  C  F  L  C  P  R  H  *  T  I  *  S  K  G  *  S  K  K  E  I  P  Q  R  A  T  T  *  K  I  G  R  K  K  *  Q  G  *  Q  R  R  R  *  *  *  Q  *  G  L  *  G  C  F  E  G  R  R  S  E  G  *  *  K  Q  A  N  G  F  C  Q  S  *  E  A  C  A  D  H  W  W  W  *  H  R  D  C  *  :  E  P  A  Y  S  G  G  Y  G  *  I  S  S  Q  S  *  C  K  F  S  T  L  *  S  Q  N  T  V  H  A  *  R  S  S  S  *  Y  G  P  E  R  K  V  L  C   : W  R  *  P  K  Q  S  *  W  S  S  I  G  V  Q  A  A  *  Y  S  C  L  G  G  F  *  *  G  S  *  C  S  Y  A  S  S  S  I  P  G  R  I  A  L  Q  K  F  *  D  *  Q  G  E  I  E  G  A  N  *  G  *  C  H  G  E  V  W  Q  C  S  *  *  G  H  T  S  K  R  T  P  T  G  S  K  *  E  R  G  *  I  *  S  C  W  *  D  C  E  G  T   : G  D  V  T  S  *  K  Q  I  *  R  G  C  L  H  Q  *  P  H  H  C  L  G  F  M  V  E  R  S  P  M  G  L  *  V  L  Q  T  N  N  Q  K  *  L  L  Y  W  C  C  W  N  *  S  S  R  S  L  C  W  S  Y  E  S  Q  H  C  S  *  G  G  C  *  R :   Y  T  C  A  C  R  G  E  E  A  S  Y  L  G  D  *  S  T  G  R  S  D  T  R  P  E  K  A  H  *  S  Y  K  E   : G  R  G  E  E  T  R  R  E  R  *  T  E  E  E  I  *  C  *  I  *  *  *   : G  Y  T  *  R  N  G  G  I  *  D  E  A  G  S  P  R  *  S  N  E  G  L  P  S  L  N  R  R  Y  G  Q  I  V  H  L  L  G  K  T  S  V  G  T  M  C  Q  S  *  V  K  L  G  M  I  F  S  L  S  K  I  V  L  *  *  R  V  C  V  G  I  A  *  D  L  F  L  L  *  F  S  T  L  K  L  Y  T  T  A  *  H  T  L  *  E  H  M  Y  N  K  I  P  K  N  W  E  A  S  M  Y  V  *  C  A  V  F  T  G  L  W  L  *  F  R  Q  S  L  F  V  *  S  S  F  S  G  S  V  L  L  F  A  F  F  Q  R  L  C  V  F  S  F  V  N  V  T  D  Y  *  C  I  G  S  L  N  K  K  F  C  C  S  I  Q  R  S  K  L  </first_frame>
            <second_frame>  R  I  L  I  A  G  R  R  V  L  Y  F  *  G  F  V  N  P  N  I  F  W  F  T  E  V  I  M  A  T  A  S   : G  A  F  K  S  R  E  D  H  R  K  Q  L  E  L  E  E  A  R  K  A  G  L  A  P  A  E  L  D  E  D  G  K  E  I  N  P  H  I  P  Q  Y  M  S  S  A  P  W  Y  L  N  A  E  R  P  :  S  L  K  H  Q  R  N  W  K  S  D  P  N  Y  T  K  S  W  Y  D  R  G  A  K  I  Y  Q  A  D  K  Y  R  K  G  A  C  E  N :   C  G  A  M  S  H  D  T  R  S  C  M  E  R  P  R  K  L  G  A  K  W  T  G  K  H  I  A  P  D  E  K  I  E  Q  F  E  L  D  Y  D  G  K  R  D  R  W  N  G  Y  D  A  A  S  Y  A  H  V  I  E  R  Y  E  A  R  D  E  A  R  R  K  Y  L  K  E  Q  Q  L  K  K  L  E  E  K  N  N  K  D  D  K  E  G  G  D  S  D  N  E  D  C  E  D  A  L  K  V  D  E  A  K  V  D  E  S  K  Q  M  D  F  A  K  V  E  K  R  V  R  T  T  G  G  G  S  T  G  T  V  R :   N  L  R  I  R  E  D  T  A  K  Y  L  L  N  L  D  V  N  S  A  H  Y  D  P  K  T  R  S  M  R  E  D  P  L  P  D  M  D  P  N  E  K  F  Y  A  :  G  D  N  Q  N  R  V  S  G  Q  A  L  E  F  K  Q  L  N  I  H  A  W  E  A  F  D  K  G  H  D  V  H  M  Q  A  A  P  S  Q  A  E  L  L  Y  K  N  F  K  I  N  K  E  K  L  K  V  Q  T  K  D  D  V  M  E  K  Y  G  N  A  A  S  E  D  T  L  P  R  E  L  L  L  G  Q  S  E  K  E  V  E  Y  D  R  A  G  R  I  V  K  G  Q  :  E  M  S  L  P  R  S  K  Y  E  E  D  V  Y  I  N  N  H  T  T  V  W  G  S  W  W  K  D  H  Q  W  G  Y  K  C  C  K  Q  T  I  R  N  S  Y  C  T  G  A  A  G  I  E  A  A  E  A  S  A  G  L  M  K  A  N  I  A  R  K  E  A  A  E   : D  T  H  V  P  V  E  E  K  R  Q  A  T  W  G  T  E  V  P  E  D  L  I  L  D  Q  K  K  L  T  E  A  I  K  K  :  E  E  E  R  R  R  E  E  K  D  E  R  K  R  K  Y  N  V  K  Y  N  D  E  :  V  T  P  E  E  M  E  A  Y  R  M  K  R  V  H  Q  D  D  P  M  K  D  F  L  H  *  I  V  D  M  A  K  L  F  T  S  *  G  K  H  Q  L  G  P  C  A  S  L  R  *  N  W  V  *  Y  F  L  C  R  K  L  Y  C  D  E  E  S  V  L  G  L  L  E  I  Y  F  F  F  D  L  V  P  *  S  C  I  Q  L  H  D  T  L  F  K  N  I  C  T  I  R  Y  L  R  I  G  K  H  L  C  T  C  N  V  L  Y  S  P  V  C  G  C  N  S  G  K  A  C  L  F  E  V  L  S  L  V  L  Y  Y  C  L  P  S  F  S  V  C  V  S  S  A  L  *  M  *  Q  I  T  N  A  L  A  H  *  I  K  N  S  V  V  P  F  N  D  Q  N  * </second_frame>
            <third_frame>   E  F  *  L  P  A  G  E  Y  Y  I  S  R  V  S  S  I  Q  I  F  F  G  L  Q  K  *  L  W  L  P  H  Q  :  V  H  L  N  L  G  R  I  T  G  N  S  W  N  W  K  K  Q  E  R  L  V  L  L  R  L  S  W  T  K  M  E  K  R  L  I  L  I  F  L  S  I  C  L  P  L  L  G  T  L  M  Q  K  D  Q :   V  *  N  I  K  G  T  G  N  Q  T  L  I  T  Q  N  H  G  M  T  E  V  R  R  Y  I  R  L  T  S  I  G  R  V  H  V  K   : T  V  E  Q  C  P  M  T  L  G  H  V  W  K  G  H  A  N  W  E  Q  N  G  Q  G  N  T  L  L  L  M  R  R  *  S  S  L  S  W  T  M  M  V  K  G  I  V  G  M  V  M  M  L  L  L  M  P  T  S  L  N  D  M  K  Q  G  M  K  Q  E  G  N  T  S  K  S  N  N  L  K  N  W  K  K  K  I  T  R  M  T  K  K  E  V  I  V  T  M  R  I  V  R  M  L  *  R  *  T  K  R  R  L  M  K  A  S  K  W  I  L  P  K  L  R  S  V  C  G  P  L  V  V  V  A  Q  G  L  L   : G  T  C  V  F  G  R  I  R  L  N  I  F  S  I  L  M  *  I  Q  H  T  M  I  P  K  H  G  P  C  V  K  I  L  F  L  I  W  T  R  T  K  S  S  M  L :   A  I  T  K  T  E  L  V  V  K  H  W  S  S  S  S  L  I  F  M  P  G  R  L  L  I  R  V  M  M  F  I  C  K  Q  L  H  P  R  Q  N  C  S  T  K  I  L  R  L  T  R  R  N  *  R  C  K  L  R  M  M  S  W  R  S  M  A  M  Q  L  V  R  T  H  F  Q  E  N  S  Y  W  V  K  V  R  K  R  L  N  M  I  V  L  V  G  L  *  R  D  R :   R  C  H  F  L  E  A  N  M  K  R  M  F  T  S  I  T  T  P  L  F  G  V  H  G  G  K  I  T  N  G  V  I  S  A  A  N  K  Q  S  E  I  A  I  V  L  V  L  L  E  L  K  Q  Q  K  P  L  L  V  L  *  K  P  T  L  L  V  R  R  L  L  K  :  I  H  M  C  L  S  R  R  R  G  K  L  L  G  G  L  K  Y  R  K  I  *  Y  *  T  R  K  S  S  L  K  L  *  R  R :   K  R  R  G  D  E  K  R  K  M  N  G  R  G  N  I  M  L  N  I  M  M  R :   L  H  L  K  K  W  R  H  I  G  *  S  G  F  T  K  M  I  Q  *  R  T  S  F  T  E  S  *  I  W  P  N  C  S  P  L  R  E  N  I  S  W  D  H  V  P  V  L  G  E  I  G  Y  D  I  F  F  V  E  N  C  I  V  M  K  S  L  C  W  D  C  L  R  S  I  S  S  L  I  *  Y  L  K  V  V  Y  N  C  M  T  H  S  L  R  T  Y  V  Q  *  D  T  *  E  L  G  S  I  Y  V  R  V  M  C  C  I  H  R  F  V  V  V  I  Q  A  K  P  V  C  L  K  F  F  L  W  F  C  I  T  V  C  L  L  S  A  F  V  C  L  Q  L  C  E  C  D  R  L  L  M  H  W  L  I  E  *  K  I  L  L  F  H  S  T  I  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12736" stop="12679"/>
                    <exon start="12600" stop="12437"/>
                    <exon start="12354" stop="12242"/>
                    <exon start="11902" stop="11489"/>
                    <exon start="11378" stop="11243"/>
                    <exon start="11150" stop="10851"/>
                    <exon start="8631" stop="8415"/>
                    <exon start="7551" stop="7448"/>
                    <exon start="7089" stop="7021"/>
                    <exon start="6938" stop="6861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFVNPNIFWFTEVIMATASGAFKSREDHRKQLELEEARKAGLAPAELDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRNWKSDPNYTKSWYDRGAKIYQADKYRKGACENCGAMSHDTRSCMERPRKLGAKWTGKHIAPDEKIEQFELDYDGKRDRWNGYDAASYAHVIERYEARDEARRKYLKEQQLKKLEEKNNKDDKEGGDSDNEDCEDALKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDMDPNEKFYAGDNQNRVSGQALEFKQLNIHAWEAFDKGHDVHMQAAPSQAELLYKNFKINKEKLKVQTKDDVMEKYGNAASEDTLPRELLLGQSEKEVEYDRAGRIVKGQEMSLPRSKYEEDVYINNHTTVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEASAGLMKANIARKEAAEDTHVPVEEKRQATWGTEVPEDLILDQKKLTEAIKKEEERRREEKDERKRKYNVKYNDEVTPEEMEAYRMKRVHQDDPMKDFLH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6689" stop="6483"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCIQLHDTLFKNICTIRYLRIGKHLCTCNVLYSPVCGCNSGKACLFEVLSLVLYYCLPSFSVCVSSAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14725" PGL_stop="18520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14725" e_stop="14765"/>
            <exon e_start="14859" e_stop="14953"/>
            <exon e_start="15029" e_stop="15129"/>
            <exon e_start="16743" e_stop="16812"/>
            <exon e_start="18028" e_stop="18080"/>
            <exon e_start="18219" e_stop="18520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.976"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="14725" e_stop="14765" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="14766" i_stop="14858" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14859" e_stop="14953" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14954" i_stop="15028" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15029" e_stop="15129" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15130" i_stop="16742" i_length="1613"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16743" e_stop="16812" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.679" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16813" i_stop="18027" i_length="1215"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18028" e_stop="18080" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="18081" i_stop="18218" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="18219" e_stop="18520" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14725" stop="14765"/>
              <exon start="14859" stop="14953"/>
              <exon start="15029" stop="15129"/>
              <exon start="16743" stop="16812"/>
              <exon start="18028" stop="18080"/>
              <exon start="18219" stop="18520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTTCTTCATCTCCCACAAAATTTCAATGGAAGCCGAAG : GGCAACGAACATCCTCCAATCCCTCGGCAGTGCTCGCTACTCTCTTGTCAAAAAGAGCTAAACTTCACGAAGATCTACGGAACCTCGAAAAACAG : GTTTATGACATGGAGACTATTTACCTACAGGATCCTAGCCAATGTGGAAATGTACTAAAAGGGTTTGAAGGGTTTTTATCTTCCTCCAAGAGTACCAGCTT : CTTGAAACGGTCCAGGAAGTTTCAACCTGAAGATAGGCTCTTTTCTTTATCGTCCGTCACCTCACCGGCA : GCTGAGGAACAAGCTCTTGGTCGGGATGGTGGAGGCATATCTGCCAATGTTCA : AGGTAGACAAAGGAAGGGCAGGGGAGGTCCAAGAGATGCAAAGAGAATGAGGCATTCAAGTGAACCAGACTATGACTATGAAGATGATCCAGATCTAATGTAATTTGGACTCTGGTGAAACGGTAGGTTTGTCGATTTTGGAATGATAAAATTGTCGATTTTGACATGTACAAATATATTTGGCGGCCTAGAATTGTATTTCTTTAGTATCGGCGGACATCAGATTAAAAAGATATTGTATCACAGTGCATATTTTTCTCTGTTGCTATTATATATAGTAAGTAGTATATGTTTTTGACCAC</gDNA_template>
            <first_frame> Q  F  L  H  L  P  Q  N  F  N  G  S  R  R :   A  T  N  I  L  Q  S  L  G  S  A  R  Y  S  L  V  K  K  S  *  T  S  R  R  S  T  E  P  R  K  T   : G  L  *  H  G  D  Y  L  P  T  G  S  *  P  M  W  K  C  T  K  R  V  *  R  V  F  I  F  L  Q  E  Y  Q  L  :  L  E  T  V  Q  E  V  S  T  *  R  *  A  L  F  F  I  V  R  H  L  T  G   : S  *  G  T  S  S  W  S  G  W  W  R  H  I  C  Q  C  S  :  R  *  T  K  E  G  Q  G  R  S  K  R  C  K  E  N  E  A  F  K  *  T  R  L  *  L  *  R  *  S  R  S  N  V  I  W  T  L  V  K  R  *  V  C  R  F  W  N  D  K  I  V  D  F  D  M  Y  K  Y  I  W  R  P  R  I  V  F  L  *  Y  R  R  T  S  D  *  K  D  I  V  S  Q  C  I  F  F  S  V  A  I  I  Y  S  K  *  Y  M  F  L  T   </first_frame>
            <second_frame>  S  F  F  I  S  H  K  I  S  M  E  A  E   : G  Q  R  T  S  S  N  P  S  A  V  L  A  T  L  L  S  K  R  A  K  L  H  E  D  L  R  N  L  E  K  Q  :  V  Y  D  M  E  T  I  Y  L  Q  D  P  S  Q  C  G  N  V  L  K  G  F  E  G  F  L  S  S  S  K  S  T  S  F :   L  K  R  S  R  K  F  Q  P  E  D  R  L  F  S  L  S  S  V  T  S  P  A  :  A  E  E  Q  A  L  G  R  D  G  G  G  I  S  A  N  V  Q :   G  R  Q  R  K  G  R  G  G  P  R  D  A  K  R  M  R  H  S  S  E  P  D  Y  D  Y  E  D  D  P  D  L  M  *  F  G  L  W  *  N  G  R  F  V  D  F  G  M  I  K  L  S  I  L  T  C  T  N  I  F  G  G  L  E  L  Y  F  F  S  I  G  G  H  Q  I  K  K  I  L  Y  H  S  A  Y  F  S  L  L  L  L  Y  I  V  S  S  I  C  F  *  P  </second_frame>
            <third_frame>   V  S  S  S  P  T  K  F  Q  W  K  P  K  :  G  N  E  H  P  P  I  P  R  Q  C  S  L  L  S  C  Q  K  E  L  N  F  T  K  I  Y  G  T  S  K  N  R :   F  M  T  W  R  L  F  T  Y  R  I  L  A  N  V  E  M  Y  *  K  G  L  K  G  F  Y  L  P  P  R  V  P  A   : S  *  N  G  P  G  S  F  N  L  K  I  G  S  F  L  Y  R  P  S  P  H  R  Q :   L  R  N  K  L  L  V  G  M  V  E  A  Y  L  P  M  F   : K  V  D  K  G  R  A  G  E  V  Q  E  M  Q  R  E  *  G  I  Q  V  N  Q  T  M  T  M  K  M  I  Q  I  *  C  N  L  D  S  G  E  T  V  G  L  S  I  L  E  *  *  N  C  R  F  *  H  V  Q  I  Y  L  A  A  *  N  C  I  S  L  V  S  A  D  I  R  L  K  R  Y  C  I  T  V  H  I  F  L  C  C  Y  Y  I  *  *  V  V  Y  V  F  D  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14726" stop="14765"/>
                    <exon start="14859" stop="14953"/>
                    <exon start="15029" stop="15129"/>
                    <exon start="16743" stop="16812"/>
                    <exon start="18028" stop="18080"/>
                    <exon start="18219" stop="18321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFISHKISMEAEGQRTSSNPSAVLATLLSKRAKLHEDLRNLEKQVYDMETIYLQDPSQCGNVLKGFEGFLSSSKSTSFLKRSRKFQPEDRLFSLSSVTSPAAEEQALGRDGGGISANVQGRQRKGRGGPRDAKRMRHSSEPDYDYEDDPDLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19506" PGL_stop="21647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19506" e_stop="19586"/>
            <exon e_start="20209" e_stop="20474"/>
            <exon e_start="21254" e_stop="21647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19506" e_stop="19586" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.806">
            <gDNA_intron_boundary i_start="19587" i_stop="20208" i_length="622"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20209" e_stop="20474" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.980">
            <gDNA_intron_boundary i_start="20475" i_stop="21253" i_length="779"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21254" e_stop="21647" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19506" stop="19586"/>
              <exon start="20209" stop="20474"/>
              <exon start="21254" stop="21647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATATTCCTCTTTTTTTCTTCCTCTCAAGGCTCATTTTAATTTTTATTTTGCTCTTCTCATGTCTTTCAAATTCAGAGGG : CCAAATGCTTCTTCTGGAATGGGTGTGGCTGATCACGGCAAAAATGCATTCTTGGAGTTGAAGAGGAAGAAAGTTCATAGATACGTGATTTTCAAAATCGATGAAAAGAAAAAGGAGGTTGTTGTTGAGAAAACTGGCAGCCCTGCTGAAACCTTTGATGACTTTACTGCTTCTTTGCCAGAAAATGATTGCCGATATGCGGTGTATGACTTTGATTTTGTGACTTCTGAGAATTGCCAAAAGAGCAAGATATTCTTTGTTCATTG : GTCTCCTGCAACATCTCGTATTCGTGCAAAGATGCTTTACGCCACCTCTAAAGACGCATTTAAAAGAGAGCTCGATGGTTTTCATTATGAGATTCAGGCTACTGATCCAACAGAAGTTGATCTTGAAGTGCTGAAAGACCGTGCTCACTGAGCCATCTTGCAATAAACACTATGTTTCCAGCTAAGCATTTAGCTTGTTAGTGTATATGGTGTTGGTATTTGTTTTGCTTTTTTCTCAGATGTTTGAACACTTGGGAACCTGCATAATAATATAATATCAGTGGTTGCCAATTTTCTAATTGTGGACTATACAAGTGTAGAATTCATGATTTGTCCTCTCTTATCCTATTTCAGCTAAGGATTATGAATATAAATATGTCTTTCGTTAGAATCA</gDNA_template>
            <first_frame> S  Y  S  S  F  F  L  P  L  K  A  H  F  N  F  Y  F  A  L  L  M  S  F  K  F  R  G  :  P  N  A  S  S  G  M  G  V  A  D  H  G  K  N  A  F  L  E  L  K  R  K  K  V  H  R  Y  V  I  F  K  I  D  E  K  K  K  E  V  V  V  E  K  T  G  S  P  A  E  T  F  D  D  F  T  A  S  L  P  E  N  D  C  R  Y  A  V  Y  D  F  D  F  V  T  S  E  N  C  Q  K  S  K  I  F  F  V  H  W :   S  P  A  T  S  R  I  R  A  K  M  L  Y  A  T  S  K  D  A  F  K  R  E  L  D  G  F  H  Y  E  I  Q  A  T  D  P  T  E  V  D  L  E  V  L  K  D  R  A  H  *  A  I  L  Q  *  T  L  C  F  Q  L  S  I  *  L  V  S  V  Y  G  V  G  I  C  F  A  F  F  S  D  V  *  T  L  G  N  L  H  N  N  I  I  S  V  V  A  N  F  L  I  V  D  Y  T  S  V  E  F  M  I  C  P  L  L  S  Y  F  S  *  G  L  *  I  *  I  C  L  S  L  E  S </first_frame>
            <second_frame>  H  I  P  L  F  F  F  L  S  R  L  I  L  I  F  I  L  L  F  S  C  L  S  N  S  E  G :   Q  M  L  L  L  E  W  V  W  L  I  T  A  K  M  H  S  W  S  *  R  G  R  K  F  I  D  T  *  F  S  K  S  M  K  R  K  R  R  L  L  L  R  K  L  A  A  L  L  K  P  L  M  T  L  L  L  L  C  Q  K  M  I  A  D  M  R  C  M  T  L  I  L  *  L  L  R  I  A  K  R  A  R  Y  S  L  F  I   : G  L  L  Q  H  L  V  F  V  Q  R  C  F  T  P  P  L  K  T  H  L  K  E  S  S  M  V  F  I  M  R  F  R  L  L  I  Q  Q  K  L  I  L  K  C  *  K  T  V  L  T  E  P  S  C  N  K  H  Y  V  S  S  *  A  F  S  L  L  V  Y  M  V  L  V  F  V  L  L  F  S  Q  M  F  E  H  L  G  T  C  I  I  I  *  Y  Q  W  L  P  I  F  *  L  W  T  I  Q  V  *  N  S  *  F  V  L  S  Y  P  I  S  A  K  D  Y  E  Y  K  Y  V  F  R  *  N   </second_frame>
            <third_frame>   I  F  L  F  F  S  S  S  Q  G  S  F  *  F  L  F  C  S  S  H  V  F  Q  I  Q  R   : A  K  C  F  F  W  N  G  C  G  *  S  R  Q  K  C  I  L  G  V  E  E  E  E  S  S  *  I  R  D  F  Q  N  R  *  K  E  K  G  G  C  C  *  E  N  W  Q  P  C  *  N  L  *  *  L  Y  C  F  F  A  R  K  *  L  P  I  C  G  V  *  L  *  F  C  D  F  *  E  L  P  K  E  Q  D  I  L  C  S  L  :  V  S  C  N  I  S  Y  S  C  K  D  A  L  R  H  L  *  R  R  I  *  K  R  A  R  W  F  S  L  *  D  S  G  Y  *  S  N  R  S  *  S  *  S  A  E  R  P  C  S  L  S  H  L  A  I  N  T  M  F  P  A  K  H  L  A  C  *  C  I  W  C  W  Y  L  F  C  F  F  L  R  C  L  N  T  W  E  P  A  *  *  Y  N  I  S  G  C  Q  F  S  N  C  G  L  Y  K  C  R  I  H  D  L  S  S  L  I  L  F  Q  L  R  I  M  N  I  N  M  S  F  V  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19506" stop="19586"/>
                    <exon start="20209" stop="20474"/>
                    <exon start="21254" stop="21404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSSFFLPLKAHFNFYFALLMSFKFRGPNASSGMGVADHGKNAFLELKRKKVHRYVIFKIDEKKKEVVVEKTGSPAETFDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFVHWSPATSRIRAKMLYATSKDAFKRELDGFHYEIQATDPTEVDLEVLKDRAH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="21512" PGL_stop="20869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21512" e_stop="20869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21512" e_stop="20869" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21512" stop="20869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCCAAGTGTTCAAACATCTGAGAAAAAAGCAAAACAAATACCAACACCATATACACTAACAAGCTAAATGCTTAGCTGGAAACATAGTGTTTATTGCAAGATGGCTCAGTGAGCACGGTCTTTCAGCACTTCAAGATCAACTTCTGTTGGATCAGTAGCCTGAATCTCATAATGAAAACCATCGAGCTCTCTTTTAAATGCGTCTTTAGAGGTGGCGTAAAGCATCTTTGCACGAATACGAGATGTTGCAGGAGACCTAAGGAAACAAAAGTAATGCACTGAGAATGTGAGAAGGAAAAAGTTTGAAGTGTTACTTATAGTTCTCTGAGATGCTGGACTTGCACATCAATCCCATTATACGTGCCATGAAATTGATTTTTCAACTAAAATGATATGTCGAAATCAAGCAAACGCATACAGAGGCAAAGGCAAAACAGTAGAAGCATTCTCAAAATTTTGCTTCCTAAAGACTAGCATTGGGAGTTTGCTACAGAGACCTGAGAATAAATGCATAATCTATTTTCGTAAAATGAGAGTAAGATGTGATTAAAAAATACAACCAAATTGATTTCTTTTTGCATTTGGAAGAGACAAACATTTTGACATTGAAAAGAAATCTCTCTGACAAATGATATACTAAA</gDNA_template>
            <first_frame> V  P  K  C  S  N  I  *  E  K  S  K  T  N  T  N  T  I  Y  T  N  K  L  N  A  *  L  E  T  *  C  L  L  Q  D  G  S  V  S  T  V  F  Q  H  F  K  I  N  F  C  W  I  S  S  L  N  L  I  M  K  T  I  E  L  S  F  K  C  V  F  R  G  G  V  K  H  L  C  T  N  T  R  C  C  R  R  P  K  E  T  K  V  M  H  *  E  C  E  K  E  K  V  *  S  V  T  Y  S  S  L  R  C  W  T  C  T  S  I  P  L  Y  V  P  *  N  *  F  F  N  *  N  D  M  S  K  S  S  K  R  I  Q  R  Q  R  Q  N  S  R  S  I  L  K  I  L  L  P  K  D  *  H  W  E  F  A  T  E  T  *  E  *  M  H  N  L  F  S  *  N  E  S  K  M  *  L  K  N  T  T  K  L  I  S  F  C  I  W  K  R  Q  T  F  *  H  *  K  E  I  S  L  T  N  D  I  L   </first_frame>
            <second_frame>  F  P  S  V  Q  T  S  E  K  K  A  K  Q  I  P  T  P  Y  T  L  T  S  *  M  L  S  W  K  H  S  V  Y  C  K  M  A  Q  *  A  R  S  F  S  T  S  R  S  T  S  V  G  S  V  A  *  I  S  *  *  K  P  S  S  S  L  L  N  A  S  L  E  V  A  *  S  I  F  A  R  I  R  D  V  A  G  D  L  R  K  Q  K  *  C  T  E  N  V  R  R  K  K  F  E  V  L  L  I  V  L  *  D  A  G  L  A  H  Q  S  H  Y  T  C  H  E  I  D  F  S  T  K  M  I  C  R  N  Q  A  N  A  Y  R  G  K  G  K  T  V  E  A  F  S  K  F  C  F  L  K  T  S  I  G  S  L  L  Q  R  P  E  N  K  C  I  I  Y  F  R  K  M  R  V  R  C  D  *  K  I  Q  P  N  *  F  L  F  A  F  G  R  D  K  H  F  D  I  E  K  K  S  L  *  Q  M  I  Y  *  </second_frame>
            <third_frame>   S  Q  V  F  K  H  L  R  K  K  Q  N  K  Y  Q  H  H  I  H  *  Q  A  K  C  L  A  G  N  I  V  F  I  A  R  W  L  S  E  H  G  L  S  A  L  Q  D  Q  L  L  L  D  Q  *  P  E  S  H  N  E  N  H  R  A  L  F  *  M  R  L  *  R  W  R  K  A  S  L  H  E  Y  E  M  L  Q  E  T  *  G  N  K  S  N  A  L  R  M  *  E  G  K  S  L  K  C  Y  L  *  F  S  E  M  L  D  L  H  I  N  P  I  I  R  A  M  K  L  I  F  Q  L  K  *  Y  V  E  I  K  Q  T  H  T  E  A  K  A  K  Q  *  K  H  S  Q  N  F  A  S  *  R  L  A  L  G  V  C  Y  R  D  L  R  I  N  A  *  S  I  F  V  K  *  E  *  D  V  I  K  K  Y  N  Q  I  D  F  F  L  H  L  E  E  T  N  I  L  T  L  K  R  N  L  S  D  K  *  Y  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21181" stop="20960"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAGLAHQSHYTCHEIDFSTKMICRNQANAYRGKGKTVEAFSKFCFLKTSIGSLLQRPENKCIIYFRKMRVRCD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0014B18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21422" stop="21228"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLQDGSVSTVFQHFKINFCWISSLNLIMKTIELSFKCVFRGGVKHLCTNTRCCRRPKETKVMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 11920 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 1986 bytes was the average size of a spliced alignment
$ 11952 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1992 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 37 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:00:04
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