<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:22:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574071" ref_strand="+" ref_description="SGN-E574071 [33481]">
      <seq>aggatttgaaggttgaaaaaaatggagcaaaaatcaaattttagtgatttaccagaagatatagtgatggagattttgtcaagattgcctgtgaaatgtctcttacaactcaagtgtgtcaacaaaaaatggtatgttttaattgaaaatccaatttttattcaaaaacacctttacaacacaaaaaatcatactacaagttattatgttcatcattattttcttgatacaatgaaatctggttttactttatttcatcatgatgaacaaaaccaattaattccaaaatcccacttgtaccaagatgttttaaacacatctacacatttgtggcaagttcttagtccattaaatggtttatttttgctttataatgatcgagaagatgtagcactatggaacccttctactaaagaatttaagcctctaccaatttcacaacccctaaattgtcctttatatatgttgtcttcatataaattcggtttcgggatcgagccctcgagtggtgactataaagtcgtttggatgagagattattgggacgtagactctgaagactggcattctcctacgattatttcagtctatacattgagtatgaatcctggagaactttggaggaattcagtgtttctagtcgcgacttggtcagtcaaacggtacacatattcgattggactttactattgcaagggcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="7662" stop="8940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7945" g_stop="8433" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8434" i_stop="8483" i_length="50">
            <donor d_prob="0.000" d_score="0.51"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8484" g_stop="8690" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="703" r_length="207" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E574071" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7945" e_stop="8433"/>
          <exon e_start="8484" e_stop="8690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCGAAGGTTAAAAAAAAAATGGAGCAAAAATCAAATTTTTTTAGTGATTTACCAGAAGATATAGAGATGGAGATTTTGTCAAGATTGCCTGTGAAATGTCTCTTACAACTCAAGTGTGTCAACAAAAAATGGTATGTTTTAATTGAAAATCCAATTTTTATTCAAAAACACCTTCACAACACAAAAAATC---CTACATGTTATTTTGTTCATCATTATTTTCTTGATACAATGAAATCTGGTTTTACTTTATTTAATCATAATGAACAAAACCAATTAATTCCAAAATCCCATTTGTACCAAGATGTTTTAAACACATCTACACATTTGTGGCAAGTTCTTAGTCCATTAAATGGTCTATTTTTGCTTTATAATGATCAAGAAGATGTAGCACTATGGAACCCTTCTACTAAAGAATTTAAGCCTCTACCAATTTCACAACCCCTAAATTGTCC--T-T-TA-----TCTTCCTATAAATTCGATTTCGGGATCGAACGTCCTTTATATAAGTTGTCTTCCTATAAATTTGGTTTCGGAATCGAG--CCCTCGAGTGGTGATTATAAAGTCGTTTGGATGAGAGATTACTGGAATGTAGACTCTGAAGACTGGCATTCTCCTACGATTATTTCAGTCTATACGTTGAGTACGAATTCCTGGAGAACTTTTGAGGAATTCAGGGTTTCTAGTCGCAACGTCGCCAAATCAAATGGTAACACATATTTGAATGGATTTTACTATTG-GAGGGCATGT</genome_strand>
        <mrna_strand>AGGATTTGAAGGTT--GAAAAAAATGGAGCAAAAATCAAA---TTTTAGTGATTTACCAGAAGATATAGTGATGGAGATTTTGTCAAGATTGCCTGTGAAATGTCTCTTACAACTCAAGTGTGTCAACAAAAAATGGTATGTTTTAATTGAAAATCCAATTTTTATTCAAAAACACCTTTACAACACAAAAAATCATACTACAAGTTATTATGTTCATCATTATTTTCTTGATACAATGAAATCTGGTTTTACTTTATTTCATCATGATGAACAAAACCAATTAATTCCAAAATCCCACTTGTACCAAGATGTTTTAAACACATCTACACATTTGTGGCAAGTTCTTAGTCCATTAAATGGTTTATTTTTGCTTTATAATGATCGAGAAGATGTAGCACTATGGAACCCTTCTACTAAAGAATTTAAGCCTCTACCAATTTCACAACCCCTAAATTGTCCTTTATATATGTTGTCTTCATATAAATTCGGTTTCGGGATCG..................................................AGCCCTCGAGTGGTGACTATAAAGTCGTTTGGATGAGAGATTATTGGGACGTAGACTCTGAAGACTGGCATTCTCCTACGATTATTTCAGTCTATACATTGAGTATGAA-TCCTGGAGAACTTTGGAGGAATTCAGTGTTTCTAGTCGCGACTTGGTC-AGTCAAACGGT-ACACATATTCGATTGGACTTTACTATTGCAAGGGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356285" ref_strand="+" ref_description="SGN-E356285 [cTOS-20-C11]">
      <seq>ttcattgctatgtacatttatgagccaataattcttggtagagaaacaagtattgacatatggattatggagaaaaatggctattggactaaaaatatgagaattggcccttttttaaatatcaaaagatcaattggatatggaaaaaatggggaaatttttcttgaagttgttacatatcaattggacatatttgatccttttttaaagaacaataaggttcttagccaacaaaaaaatggctactctttgcaagcttttgcttacaatgaaagcttaatttcattgaaaaatatttcattcttggaatttagttgggtaatgatataaatgaaaatgatggctataatttaaattctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="8499" stop="9458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8799" g_stop="9158" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="371"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E356285" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8799" e_stop="9158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</genome_strand>
        <mrna_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAATTTCATTGAAAAATATTTCATTCTTGGAATTTAGTTGGGTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354793" ref_strand="+" ref_description="SGN-E354793 [cTOS-19-C10]">
      <seq>ttcattgctatgtacatttatgagccaataattcttggtagagaaacaagtattgacatatggattatggagaaaaatggctattggactaaaaatatgagaattggcccttttttaaatatcaaaagatcaattggatatggaaaaaatggggaaatttttcttgaagttgttacatatcaattggacatatttgatccttttttaaagaacaataaggttcttagccaacaaaaaaatggctactctttgcaagcttttgcttacaatgaaagcttagtttcattgaaaaatatttcattcttgtaatttagttggttaatgatataaatgaaaatgatggctataatttaaattctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="8499" stop="9458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8799" g_stop="9158" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="371"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E354793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8799" e_stop="9158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</genome_strand>
        <mrna_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623866" ref_strand="+" ref_description="SGN-E623866 [89010]">
      <seq>gagcaattaccatggatccaatatcatgaaattccaggtgctggtcatttggttccaatgattgatggaattgtagagaaaatcatcaagactcttttaaccgcgttaaactcaccatttttatatctacgtgcaaggtttcatcttgcacgtcgtgatgtgttttaagttgccgacatatctctggttttatcgatttcatattttgatgtcaaagttttgactttgagagaaatattttgtattagaaattcttttgtgctccttttgtaatcaaggatagtgatgtttaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="17536" stop="3599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17237" g_stop="16968" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16967" i_stop="16548" i_length="420">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16547" g_stop="16521" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="283" r_length="23" r_score="0.630"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16520" i_stop="14566" i_length="1955">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14565" g_stop="14542" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="307" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E623866" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.046" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17237" e_stop="16968"/>
          <exon e_start="16547" e_stop="16521"/>
          <exon e_start="14565" e_stop="14542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCG-TAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAACATTTTTTTTCCTTTTAAACGGTAGCGTGTATCAAGCACTTACCATTATGTCGAAAGTTATACTTGATAGTAACGATGCAAAATTGTATCGTAACCAAGCACATCAATCAAGTGTTATGTTCGACATGATTTCGACTTGAGCCATTTGGTAGGGAGCCATTTCCCAAATGGGCCCTCTACGCAGGAAACTGAAATAGTCGGACTTTAATTTCGGAGCGAAAATTAAAAAGAAAGTATTGCCTAGCTACGATAGTAATTGTTTCTTGACTTAATACTAACTCAAGTTTGTTTATCATTAAAAAAAAAGTTAGTTAAATATTGTTATATTATGGATTTATATCTTGAGAAAAAATATTTAAAAAAACTTTTTATTAAAATTTTTTTTTTCACCAGACTCAAATTCGAAATCACATGGAAAAGATATCATTCATCCCACCATACCTTCCATGGTAAAGCACAAGATTTTCTAGGGTGCAATATTTAGCATAATATTTAGCATATATACAGAAACTACTGATTGATTTCGTATCATGTACGCTTATGGGAAATTACTGATCTTTAAAGATCTTTTTATTCATAAAGCTTGAATACGATATCTCTAACCAATGGTGAAGCACATCGATTTCACATAATTACAAAAGAAGGGACATTAAAGTAATTTGCATAGAATGTTACCTTTGTAAAAATCGGTGAACCGGTTGAGTTATTATTTTTTACATTTTTTTTGTAATTTGTTCTCAATTATACCCTTGTTATGTTTATGAATTTTTTTTCCTCTCAAAAGGGATTGTAAATTGTAATTAATGATTTATAACACATTTGTATGTTTGTATACTAAAGGATTTTTCAACAATATTCATAATTAAGGCTTTAACATTTTTGGAAGGATTTAATAAGTTGTTACATTGTTGAATATCGCTCCGTTCTGTTATAACTTAAAAATTAAAAAATTTCAACGTCGAACCTTAAATCTTTCGAGACGTATACTACGTAATAACTAGTAATTATAACGCTCTCACACCATTACGACATTGAAGAGTTGTCCATCGGTGTACGTATTTTCTCAAGAGATGGCAAATACGCAACAACAATGTCCTTAGACTAACATAAAGATCAATCTAAATGATTAATTTAGTTTGTAAATAGACTCATAGAAAAGAAAATATAAAAAAAAATAAATCATCGATTCAAGCACTCAACTCGATAATAACTTACCTCAAATTCCATAGTAGACAAATTCTTTGTAGGGAAAATATGTGTACCTTGCAATTCATTTCATACTATAATGTTTCTTTGTCTGTTTGCATTTCTAAAACAATGTATCTAATAAAACTAAAACATAACTTATAAAACGAATGAATACAATCTAGCTACGAATAAATTTAGTCATTTAATATAACGAGTTTATCTGAGTTCAATATTTTCAAACGAACTATCATATATATGTGACAATCATCTAAATAAACTTTCAATAAAAGTTAGATTTGAACTTATAGTTTTAAATTATAATGTAAGATCTTTTAGACAACATTGTTTGTACTTTACATAAAATAAACAATATTTTACCCAAGATCTTTCTAGATTTGAAATACATGACCAAAAAAAAAGATTAATTTTAAGGGGCAAAAACAATATTTTTTTCAAAAAGTAGAAGCAAATAATTATTTTTTTTTAAATATAAAAATATCTTATCATAAATTTATTTATTTTCCGTATCTCGTCCTTTTTCTTTTCCTCTTTGACATAATCCATTAATTATAAAAAGAATAATTATTTTTACTTTGTTTTCTACAGTTCTTAATTCCTCTAATTTCTCCCTCACCTTTTTTCTAAAATAAACAAACTATAGCTAGAAAAAGTGAGTTAACTCTTTGTATAAATAATAAAATAAAATATAATAGTAGAATATTTCATGATAATAATTATGATTTTTCAAAATTTAACATTCAAAAATACTTTTAAAAGAAAATTAATCAGACACAATTAATTACTTAACAACTATTAAAACAAAATTAAATACTTCTCAAACAAACTACAACAATCATCAAAAAAATTTAATTAAGAAATGGCAAAAATAAAGAAGTAAAATTGGGTTAAGAAATAAAAAATGTTACAAGTAATATATACATAAAAATACATTTTCACCTGACTATATAATATAATCTTCTTATGAATGGTTGTTAACGTTATCTATCGCTACTAATAACAACAACAAACTCAATTAAATTATACAAATAATAATAGAACGTAATCAAACTTCATTATAAAGATAAAATAATTATTTTTAGAGAATATTTAACTCAAATAAAACCATTTCAGATGATCTCAAACAAAATGATCAACATAATTTATTTATTTATTTTGGTCAAAAATACTAATTTCTATAAAAGAAAAAAAAA</genome_strand>
        <mrna_strand>GAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGGTTCCAATGATTGATGGAATTGTAGAGAAAATCATCAAGACTCTTTTAACCGCGTTAAACTCACCATTTTTATATCTACGTGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGCCGACATATCTCTGG--TTT-T--ATCG---A-TTTCATATTTTGATGTC-AA-AGTTTTGACTTTGAGAGAAATATTTTGTATTAGAAATTCTTTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTC-CTTTTGTAATCA-A-GG-ATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTTTAAACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542597" ref_strand="+" ref_description="SGN-E542597 [TUS-63-P19]">
      <seq>gcaatgagcaactttgcacctagtcatgttctcacgcttgcttctcgttgtgtagaccgtgctttcaagggaagcaattgtttgactaggcttaatgcctttgtccgataagtttgtatcgaaaacagataacttaattggtgtttcgtttcctaaagttttggattttcttgtgctgtttgagctcactgtttctattactcaactctcctttcaggcacaggtaagacaacaaggagaatatgaatccctccaccgcgacttaatgattggattcggaacatgggaattcgatccaatggatcttgagaacccgttccctaacaatgaaggttccgttcacttatggcaaggcgatgaggataggctctcgcccgtcacactacaaaggtacatttcacagcaattaccatggatccaatatcatgaaattccaggtgctggtcatttgattccaatgattgatggaattggagagaaaatcttcaagactcttttaactgcgtaaactcaccatttttatagctacgcgcaaggtttcatcttgcacgtcgtgatgtgttttaagttgtctacatatctctggtttttgtcgatcgttaagtttcatattttgatgtcaaagagttttgactttgagagaaatattttgtattacaaattcttttgtttgtaattaaggatagtgatatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="17926" stop="16639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17637" g_stop="16934" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E542597" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17637" e_stop="16934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAACATTTTT</genome_strand>
        <mrna_strand>GCAATGAGCAACTTTGCACCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301185" ref_strand="+" ref_description="SGN-E301185 [cLEW-22-L7]">
      <seq>caatgagcaactttgcacctagtcatgttctcacgcttgcttctcgttgtgtagaccgtgctttcaagggaagcaattgtttgactaggcttaatgcctttgtccgataagtttgtatcgaaaacagataacttaattggtgtttcgtttcctaaagttttggattttcttgtgctgtttgagctcactgtttctattactcaactctcctttcaggcacaggtaagacaacaaggagaatatgaatccctccaccgcgacttaatgattggattcggaacatgggaattcgatccaatggatcttgagaacccgttccctaacaatgaaggttccgttcacttatggcaaggcgatgaggataggctctcgcccgtcacactacaaaggtacatttcacagcaattaccatggatccaatatcatgaaattccaggtgctggtcatttgattccaatgattgatggaattggagagaaaatcttcaagactcttttaactgcgtaaactcaccatttttatagctacgcgcaaggtttcatcttgcacgtcgtgatgtgttttaagttgtctacatatctctggtttttgtcgatcgttaagtttcatattttgatgtcaaagagttttgactttgagagaaatattttgtattacaaattcttttgtttgtaattaaagatagtgatatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="17926" stop="16639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17636" g_stop="16934" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E301185" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17636" e_stop="16934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAACATTTTT</genome_strand>
        <mrna_strand>CAATGAGCAACTTTGCACCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAAGATAGTGATATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542594" ref_strand="+" ref_description="SGN-E542594 [TUS-63-P19](-)">
      <seq>gcaatgagcaactttgcacctagtcatgttctcacgcttgcttctcgttgtgtagaccgtgctttcaagggaagcaattgtttgactaggcttaatgcctttgtccgataagtttgtatcgaaaacagataacttaattggtgtttcgtttcctaaagttttggattttcttgtgctgtttgagctcactgtttctattactcaactctcctttcaggcacaggtaagacaacaaggagaatatgaatccctccaccgcgacttaatgattggattcggaacatgggaattcgatccaatggatcttgagaacccgttccctaacaatgaaggttccgttcacttatggcaaggcgatgaggataggctctcgcccgtcacactacaaaggtacatttcacagcaattaccatggatccaatatcatgaaattccaggtgctggtcatttgattccaatgattgatggaattggagagaaaatcttcaagactcttttaactgcgtaaactcaccatttttatagctacgcgcaaggtttcatcttgcacgtcgtgatgtgttttaagttgtctacatatctctggtttttgtcgatcgttaagtttcatattttgatgtcaaagagttttgactttgagagaaatattttgtattacaaattcttttgtttgtaattaaggatagtgatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="17926" stop="16639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17637" g_stop="16935" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E542594" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17637" e_stop="16935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAACATTTT</genome_strand>
        <mrna_strand>GCAATGAGCAACTTTGCACCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435363" ref_strand="-" ref_description="SGN-E435363 [STM-61-M14]">
      <seq>tttccaagcaaagttcgagccaagactatcgtgcacaggtaagacaacaaggagaatacgaatccctccaccgcgacttaatgattggattcggaacatgggaattcgatccaatggatcttgagaacccattccctaaaactgaaggttccgttcacttatggcaaggcgatgaggataggctctcgcccgtcacactacaaaggtacattgcagagcaattaccatggatccaatatcatgaaattccaggtgctggtcatttggttccaatgattgatggaattgtagagaaaatcatcaagactcttttaaccgcgtaaactcaccatttttatatctacgtgcaaggtttcatcttgcacgtcgtgatgtgttttaagttgccgacatatctctggttttatcgatttcatattttgatgtcaaagttttgactttgagagaaatattttgtattagaaattcttttgtgctccttttgtaatcaaggatagtgatgtttaaacattttccttttccttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="19603" stop="16668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19303" g_stop="19272" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19271" i_stop="17421" i_length="1851">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17420" g_stop="16970" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="472" r_length="440" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E435363" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435363" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19303" e_stop="19272"/>
          <exon e_start="17420" e_stop="16970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAAGCAAAGTTCGAGCCAAGACTATCGTGTAAGAGCTCTTTCCTTTAATATCAATTTGTTAAATGAAGATGTTAGGAGGATGGTATTACAGCTACATTTATAAATTTGGGTTGGAAATTATTCGAGTTGTGCTTGAGCCTGGCTGCATATTACATGAGCTTGGAAACCACCTCAAACTTCGCTACGGAAAAATATTTACCCATCTCAAGTTTTAGCTTAGTGTAGATATGATAATGTCTAGTTTCTCCTATTTTCTTCAATCCAGAATCAAGTTCTGGAATCAACCGTTAATAGACCAACATAACTTTCTACTATCAACCGTAGAGTCAGGGTGGGTGGGGTGGGTGTAACTGAGGGAGACTGAGAGAGACAAACAAAAGGCTAACAAATTGATGATTGGCATTCTTGTAAGTGTGTTATAAGAGTTCGCCTATGCTTTGGAGTATATCGTGCGGTCTATTGAATCACTTGGAAATGCTAATTTTATATTTTTAGACCTACAATAAGAACCTCCTGTTTGGGATTAGTGCAATCGAAGCTTACAAGAGTAAATATGACAAATTCATGCTCAACAAAATGTAGCAAGTTTGTGCTTATAGAAGCTGAATCAAGATCTGTTCACGCACAAGTTGGCTAATCTACAACCCTTAGGTATGTGAGAAATACATGTTACCAATTTTTTTTTAAAAAGGAATATGTATTTGTATCCGAGTATCAAAAGTCATTGATATGTAAAAATACATTGGGGTCAATCATAGTACTTCCAATGATAAGGATTGATCGGCATTCAACAAATAGACATAGCAAGGGATAATGGTTAAAGTTTCTTTTCTTTTTCTTGATAATGCTGCTCGGATAATATTGTGCACTTCGACTAATCTATGGATGCTTGTTATCTTCTACCAATGCATTATACATGTATTTATTAACCGTCTTAAACTAAAGATATATAAAATTTACAAAAATATCCTTTAATCGTGTAGTCTTAGACAAGCCACGTAGTAAGTTGGAATTAAAAGATTGCAAAAAAAGGTAATAAACCTTTTTTTAAAAAAATGGACTAAAAGGGAAAGTGAAACAAACAAATTGAAACGGAGCGAGTAATGTGTTTCTGGCTAAAGATGTCCGGTGGGGTTCTTGAGAGGACCCACATTTGTTGAGACCTCGAAGTGTTACTATTAAGTTACGAGGCCTTTAACAAAAATGGGGCCTAATAAGCTTGTTGTTTATGGAGAAGAAGAAGCATGGGAGACTAGGCTTCAAAACCTATCAGTGCTAACAAAAAAGAAAATCAAAGCCTTAGTTGTCAGGTTACCACTACTTCGTGTTGAACTTGATAGGAGGTATCCAGTGCCAAATGAAATAGTCAAGGTGCATGCAAGTTCGCCTAAATACCAGTTTTACGGAGAAAACTTTTGTTGTGTATGTTGATGTGGTGTATAGGACAATGGGTCTTAGGATGACTCTTTGCGTACCAAGAGAGTCATGCAGAGGAATGATATTGACACTTCATTCCGAGAGAAACGCCCTTTTGCGTATAACATAGCTTTTAAGCATCAACATTTTGAAGCCTTCATTTGTAGAGGCAGATATCAGTGAGCTTATGCCGCTTTTGTAAATAGTAAGATTAAACTCCACAGGCTAAGAAATTTTGATCGATGTGCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTT</genome_strand>
        <mrna_strand>TTTCCAAGCAAAGTTCGAGCCAAGACTATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGTAAGACAACAAGGAGAATACGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCATTCCCTAAAACTGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTGCAGAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGGTTCCAATGATTGATGGAATTGTAGAGAAAATCATCAAGACTCTTTTAACCGCGTAAACTCACCATTTTTATATCTACGTGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGCCGACATATCTCTGG--TTT-T--ATCG---A-TTTCATATTTTGATGTC-AA-AGTTTTGACTTTGAGAGAAATATTTTGTATTAGAAATTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465863" ref_strand="+" ref_description="SGN-E465863 [cPRO-22-B5]">
      <seq>ggccctcccgtcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagattggtgtatctagagataatgcaaaatataagattgtgtatatccatgggtacgatggttgtaggcattatgttccaattaacatcctctctcaagatgtcattgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagtttagcttttgatatacaggagcttgccgatcaattaggtctaggatccaaattctatgttatgggattttcaatggggggacaggctgtttggacctgcctcagatacattcctcacaggttggcaggtgctgctcttattgcaccagttgccaactattggtggcctaggttacctgtgaatatgtcccaagaagcattcaaccttcgacttcctcaagacaaatggactcttcgtgttgctcattaccttccgtggctcacctattggtggaacactcagaagttctttccctcatgtagtgcagcaggtcgcaaccctgcaattttctcttcgaaggacctagagctagtttccaagcaaagttcgagccaagactatcgtgcacaggtaagacnacaaggagaatacgaatccctccaccgcgactttatgattggattcggaacatgggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="20980" stop="17047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20680" g_stop="20522" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="371" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19272" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="636" r_length="265" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19271" i_stop="17421" i_length="1851">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17420" g_stop="17347" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="710" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E465863" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20680" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19272"/>
          <exon e_start="17420" e_stop="17347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGTGTAAGAGCTCTTTCCTTTAATATCAATTTGTTAAATGAAGATGTTAGGAGGATGGTATTACAGCTACATTTATAAATTTGGGTTGGAAATTATTCGAGTTGTGCTTGAGCCTGGCTGCATATTACATGAGCTTGGAAACCACCTCAAACTTCGCTACGGAAAAATATTTACCCATCTCAAGTTTTAGCTTAGTGTAGATATGATAATGTCTAGTTTCTCCTATTTTCTTCAATCCAGAATCAAGTTCTGGAATCAACCGTTAATAGACCAACATAACTTTCTACTATCAACCGTAGAGTCAGGGTGGGTGGGGTGGGTGTAACTGAGGGAGACTGAGAGAGACAAACAAAAGGCTAACAAATTGATGATTGGCATTCTTGTAAGTGTGTTATAAGAGTTCGCCTATGCTTTGGAGTATATCGTGCGGTCTATTGAATCACTTGGAAATGCTAATTTTATATTTTTAGACCTACAATAAGAACCTCCTGTTTGGGATTAGTGCAATCGAAGCTTACAAGAGTAAATATGACAAATTCATGCTCAACAAAATGTAGCAAGTTTGTGCTTATAGAAGCTGAATCAAGATCTGTTCACGCACAAGTTGGCTAATCTACAACCCTTAGGTATGTGAGAAATACATGTTACCAATTTTTTTTTAAAAAGGAATATGTATTTGTATCCGAGTATCAAAAGTCATTGATATGTAAAAATACATTGGGGTCAATCATAGTACTTCCAATGATAAGGATTGATCGGCATTCAACAAATAGACATAGCAAGGGATAATGGTTAAAGTTTCTTTTCTTTTTCTTGATAATGCTGCTCGGATAATATTGTGCACTTCGACTAATCTATGGATGCTTGTTATCTTCTACCAATGCATTATACATGTATTTATTAACCGTCTTAAACTAAAGATATATAAAATTTACAAAAATATCCTTTAATCGTGTAGTCTTAGACAAGCCACGTAGTAAGTTGGAATTAAAAGATTGCAAAAAAAGGTAATAAACCTTTTTTTAAAAAAATGGACTAAAAGGGAAAGTGAAACAAACAAATTGAAACGGAGCGAGTAATGTGTTTCTGGCTAAAGATGTCCGGTGGGGTTCTTGAGAGGACCCACATTTGTTGAGACCTCGAAGTGTTACTATTAAGTTACGAGGCCTTTAACAAAAATGGGGCCTAATAAGCTTGTTGTTTATGGAGAAGAAGAAGCATGGGAGACTAGGCTTCAAAACCTATCAGTGCTAACAAAAAAGAAAATCAAAGCCTTAGTTGTCAGGTTACCACTACTTCGTGTTGAACTTGATAGGAGGTATCCAGTGCCAAATGAAATAGTCAAGGTGCATGCAAGTTCGCCTAAATACCAGTTTTACGGAGAAAACTTTTGTTGTGTATGTTGATGTGGTGTATAGGACAATGGGTCTTAGGATGACTCTTTGCGTACCAAGAGAGTCATGCAGAGGAATGATATTGACACTTCATTCCGAGAGAAACGCCCTTTTGCGTATAACATAGCTTTTAAGCATCAACATTTTGAAGCCTTCATTTGTAGAGGCAGATATCAGTGAGCTTATGCCGCTTTTGTAAATAGTAAGATTAAACTCCACAGGCTAAGAAATTTTGATCGATGTGCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATT</genome_strand>
        <mrna_strand>GGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGATTGGTGTATCTAGAGATAATGCAAAATATAAGATTGTGTATATCCATGGGTACGATGGTTGTAGGCATTATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATTGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGTTTAGCTTTTGATATACAGGAGCTTGCCGATCAATTAGGTCTAGGATCCAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGCCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGCCAACTATTGGTGGCCTAGGTTACCTGTGAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCCTCATGTAGTGCAGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGTAAGACNACAAGGAGAATACGAATCCCTCCACCGCGACTTTATGATTGGATTCGGAACATGGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210660" ref_strand="+" ref_description="SGN-E210660 [cLEC-68-F19]">
      <seq>tcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattaggtctaggatcgaaattctatgttatgggattttcaatggggggacaggctgtttggacctgtctcagatacattcctcacaggttggcaggtgctgctcttattgcaccagttgtcaactattggtggcctaggtttcctgctaatatgtcccaagaagcattcaaccttcgacttcctcaagacaaatggactcttcgtgttgctcattaccttccgtggctcacctattggtggaacactcagaagttctttccttcatgcagtgctgcaggtcgcaaccctgcaattttctcttcgaaggacctagagctagtttccaagcaaagttcgagccaagactatcgtgcacaggtaagacaacaaagagaatatgaatccctccaccgcgacttaatgattggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="20970" stop="17062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20670" g_stop="20522" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="361" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19272" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="626" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19271" i_stop="17421" i_length="1851">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17420" g_stop="17362" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="685" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E210660" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20670" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19272"/>
          <exon e_start="17420" e_stop="17362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGTGTAAGAGCTCTTTCCTTTAATATCAATTTGTTAAATGAAGATGTTAGGAGGATGGTATTACAGCTACATTTATAAATTTGGGTTGGAAATTATTCGAGTTGTGCTTGAGCCTGGCTGCATATTACATGAGCTTGGAAACCACCTCAAACTTCGCTACGGAAAAATATTTACCCATCTCAAGTTTTAGCTTAGTGTAGATATGATAATGTCTAGTTTCTCCTATTTTCTTCAATCCAGAATCAAGTTCTGGAATCAACCGTTAATAGACCAACATAACTTTCTACTATCAACCGTAGAGTCAGGGTGGGTGGGGTGGGTGTAACTGAGGGAGACTGAGAGAGACAAACAAAAGGCTAACAAATTGATGATTGGCATTCTTGTAAGTGTGTTATAAGAGTTCGCCTATGCTTTGGAGTATATCGTGCGGTCTATTGAATCACTTGGAAATGCTAATTTTATATTTTTAGACCTACAATAAGAACCTCCTGTTTGGGATTAGTGCAATCGAAGCTTACAAGAGTAAATATGACAAATTCATGCTCAACAAAATGTAGCAAGTTTGTGCTTATAGAAGCTGAATCAAGATCTGTTCACGCACAAGTTGGCTAATCTACAACCCTTAGGTATGTGAGAAATACATGTTACCAATTTTTTTTTAAAAAGGAATATGTATTTGTATCCGAGTATCAAAAGTCATTGATATGTAAAAATACATTGGGGTCAATCATAGTACTTCCAATGATAAGGATTGATCGGCATTCAACAAATAGACATAGCAAGGGATAATGGTTAAAGTTTCTTTTCTTTTTCTTGATAATGCTGCTCGGATAATATTGTGCACTTCGACTAATCTATGGATGCTTGTTATCTTCTACCAATGCATTATACATGTATTTATTAACCGTCTTAAACTAAAGATATATAAAATTTACAAAAATATCCTTTAATCGTGTAGTCTTAGACAAGCCACGTAGTAAGTTGGAATTAAAAGATTGCAAAAAAAGGTAATAAACCTTTTTTTAAAAAAATGGACTAAAAGGGAAAGTGAAACAAACAAATTGAAACGGAGCGAGTAATGTGTTTCTGGCTAAAGATGTCCGGTGGGGTTCTTGAGAGGACCCACATTTGTTGAGACCTCGAAGTGTTACTATTAAGTTACGAGGCCTTTAACAAAAATGGGGCCTAATAAGCTTGTTGTTTATGGAGAAGAAGAAGCATGGGAGACTAGGCTTCAAAACCTATCAGTGCTAACAAAAAAGAAAATCAAAGCCTTAGTTGTCAGGTTACCACTACTTCGTGTTGAACTTGATAGGAGGTATCCAGTGCCAAATGAAATAGTCAAGGTGCATGCAAGTTCGCCTAAATACCAGTTTTACGGAGAAAACTTTTGTTGTGTATGTTGATGTGGTGTATAGGACAATGGGTCTTAGGATGACTCTTTGCGTACCAAGAGAGTCATGCAGAGGAATGATATTGACACTTCATTCCGAGAGAAACGCCCTTTTGCGTATAACATAGCTTTTAAGCATCAACATTTTGAAGCCTTCATTTGTAGAGGCAGATATCAGTGAGCTTATGCCGCTTTTGTAAATAGTAAGATTAAACTCCACAGGCTAAGAAATTTTGATCGATGTGCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATT</genome_strand>
        <mrna_strand>TCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGTAAGACAACAAAGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435362" ref_strand="+" ref_description="SGN-E435362 [STM-61-M14]">
      <seq>ggccctcccgtcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagattggtgtatctagagataatgcaaaatataagattgtgtatatccatgggtacgatggttgtaggcattatgttccaattaacatcctctctcaagatgtcattgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagtttagcttttgatatacaggagcttgccgatcaattaggtctaggatccaaattctatgttatgggattttcaatggggggacaggctgtttggacctgcctcagatacattcctcacaggttggcaggtgctgctcttattgcaccagttgccaactattggtggcctaggttacctgtgaatatgtcccaagaagcattcaaccttcgacttcctcaagacaaatggactcttcgtgttgctcattaccttccgtggctcacctattggtggaacactcagaagttctttccctcatgtagtgcagcaggtcgcaaaccctgcattttctcttcgaaagacctagagctagtttccaagcaaagttcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="20980" stop="18985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20680" g_stop="20522" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="371" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19285" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="623" r_length="252" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E435362" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20680" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGC-AACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAG</genome_strand>
        <mrna_strand>GGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGATTGGTGTATCTAGAGATAATGCAAAATATAAGATTGTGTATATCCATGGGTACGATGGTTGTAGGCATTATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATTGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGTTTAGCTTTTGATATACAGGAGCTTGCCGATCAATTAGGTCTAGGATCCAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGCCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGCCAACTATTGGTGGCCTAGGTTACCTGTGAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCCTCATGTAGTGCAGCAGGTCGCAAACCCTGC-ATTTTCTCTTCGAAAGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258427" ref_strand="+" ref_description="SGN-E258427 [cLEG-47-M22]">
      <seq>gcgaaaattcttctggttgttttgattgggttattagcgtggggttatcaagcaacacgaccacctccccctaagacctgtggatccccagatggccctcccgtcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattaggtctaggatcgaaattctatgttatgggattttcaatggggggacaggctgtttggacctgtctcagatacattcctcacaggttggcaggtgctgctcttattgcaccagttgtcaactattggtggcctaggtttcctgctaatatgtcccaagaagcattcaaccttcgacttcctcaagacaaatggactcttcgtgttgctcattaccttccgtggctcacctattggtggaacactcagaagttctttccttcatgcagtgctgcaggtcgcaaccctgcaattttctcttcgaaggacctagagctagtttccnagcaaagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="21073" stop="18987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20773" g_stop="20522" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="464" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19287" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="714" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E258427" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20773" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCG</genome_strand>
        <mrna_strand>GCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCNAGCAAAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214001" ref_strand="+" ref_description="SGN-E214001 [cLEC-80-F22]">
      <seq>tgttttgattgggttattagcgtggggttatcaagcaacacgaccacctccccctaagacctgtggatccccagatggccctcccgtcactgcacctataatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacaatgggtgtaagcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattatgtctaggatcgaaattctatgttatgggattttcaatggggggacaggctgtttggacctgtctcagatacattcctcacaggctggcaggtgctgctcttattgcaccagttgtcaactattggtggcctaggtttcctgctaatatgtcccaagaagcattcgaccttcgacttcctcaagacaaatggactcttcgtgtagctcattaccttccgcggctcacctattggtggaacactcagaagttctttccttcatgcagtgctgcaggtcgcaaccctgcaattttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="21056" stop="19022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20756" g_stop="20522" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="447" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19322" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="662" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E214001" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20756" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTT</genome_strand>
        <mrna_strand>TGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTATAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACAATGGGTGTAAGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTATGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCGACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTAGCTCATTACCTTCCGCGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561511" ref_strand="+" ref_description="SGN-E561511 [16396]">
      <seq>agatggccctcccgtcactgcacctaaaatcaaacttagtgatggaagacacttggcttacaaggagattggatgtatctagagataatgcaaaatataagattgtgtatatccatgggtacgatggttgtaggcatttatgttccaattaacatcctctctcaagatgtcattgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagtttagcttttgatatacaggagcttgccgatcaattaggtctaggatccaaattctatgttatgggattttcaatggggggacaggctgtttggacctgcctcagatacattcctcacaggttggcaggtgctgctcttattgcaccagttgccaactattggtggcctaggttacctgtgaatatgtcccaagaagcattcaagccttcgacttcctcgaagaccaaatggactcttcggtgttgctcattaccttccgtggtcacctattggtggaacactcaggaagttctttccctcatgtatgcagcaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="20984" stop="19043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20684" g_stop="20522" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="377" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19343" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="574" r_length="197" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E561511" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20684" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGG-TGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCA-TGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAA-CCTTCGACTTCCTC-AAGA-CAAATGGACTCTTC-GTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCA-GAAGTTCTTTCCTTCATGCAGTGCTGCAGGTC</genome_strand>
        <mrna_strand>AGATGGCCCTCCCGTCACTGCACCTAAAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGATTGGATGTATCTAGAGATAATGCAAAATATAAGATTGTGTATATCCATGGGTACGATGGTTGTAGGCATTTATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATTGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGTTTAGCTTTTGATATACAGGAGCTTGCCGATCAATTAGGTCTAGGATCCAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGCCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGCCAACTATTGGTGGCCTAGGTTACCTGTGAATATGTCCCAAGAAGCATTCAAGCCTTCGACTTCCTCGAAGACCAAATGGACTCTTCGGTGTTGCTCATTACCTTCCGTGG-TCACCTATTGGTGGAACACTCAGGAAGTTCTTTCCCTCATGTA-TGCAGCAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205749" ref_strand="+" ref_description="SGN-E205749 [cLEC-21-D22]">
      <seq>ccgtcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattaggtctaggatcgaaattctatgttattgggattttcaatggggggacaggctgtttggacctgtctcaaatacattcctcacaggttggcaggtgctgctcttattgcaccagttgtcaactattggtggcctaggtttcctgctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="20973" stop="19171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20673" g_stop="20522" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="365" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19471" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="431" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E205749" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20673" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTAT-GGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATAT</genome_strand>
        <mrna_strand>CCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATTGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAAATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254771" ref_strand="+" ref_description="SGN-E254771 [cLEG-33-M7]">
      <seq>tgggttattagcgtggggttatcaagcaacacgaccacctccccctaagacctgtggatccccagatggccctcccgtcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaagagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattaggtctaagatcgaaattctatgttatgggattttcaatggggggacaggctgtttggacctgtctcagatacattcctcacaggttggcaggtgctgctcttattgcaccagttgtcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="21047" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20747" g_stop="20522" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="438" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19536" g_stop="19498" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="477" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E254771" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20747" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTA</genome_strand>
        <mrna_strand>TGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAAGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAAGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265378" ref_strand="+" ref_description="SGN-E265378 [cLEI-9-G9]">
      <seq>gcgaaaattcttctggttgttttgattgggttatgggcgtggggttatcaagcgacactaccacctccccctaagacctgtggatccccagatggccctcccgtcactggacctagaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttatgagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaaggacttgctgatcaattaggtctatgatcgaaattctatgtcttgggattttcaatggggggacaggctggttggacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="21073" stop="19950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20773" g_stop="20522" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20250" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="443" r_length="191" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E265378" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20773" e_stop="20522"/>
          <exon e_start="20440" e_stop="20250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTG</genome_strand>
        <mrna_strand>GCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATGGGCGTGGGGTTATCAAGCGACACTACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGGACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTATGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAAGGACTTGCTGATCAATTAGGTCTATGATCGAAATTCTATGTCTTGGGATTTTCAATGGGGGGACAGGCTGGTTGGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323317" ref_strand="+" ref_description="SGN-E323317 [cTOB-28-N24]">
      <seq>aaaagatttcgaacaattattaaatcagtgagatgagactcagatctcttcaaccttcatttttgtataatttttgtaaatctacagtgtgaatacaaaatttgtaatttcaaaatcaagaacttgattcagcaaaaaaaaaaaaaaaatggcaaccaagaagatttcagcagcttcagctagggctcatactcgtaaagctaagcaaaaaagttctattccttttccttctggggcatttgcgaaaattcttctggttgttttgattgggttattagcgtggggttatcaagcaacacgaccacctccccctaagacctgtggatccccagatggccctcccgtcactgcacctaaaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattaggtctaagatcgaaattctatgttatgggattttcaatggggggacaggctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="22795" stop="19957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22495" g_stop="22263" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22262" i_stop="20782" i_length="1481">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20781" g_stop="20522" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="493" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20440" g_stop="20257" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="677" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E323317" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22495" e_stop="22263"/>
          <exon e_start="20781" e_stop="20522"/>
          <exon e_start="20440" e_stop="20257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAATGGCAACCAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAAAGTTCTATTCCTTTTCCTTCTGGTGAGTTTTCTTTTTTTATTTTTGGTATAAATTTCCAGTTTTATTTTATCATATGTTGAAAATATAGTGAAAAAACTGAATTTAGTATGTAAAGTTAGTTAGTTTCTTTAACTAGAGGTCTCAGGTTCGAGCTGAGGTAGGAGTTGCCTTTGTTAGAGGATAATTTACACTAAGGAGGGATTTTACCAATGTGAATCTGGATTTAATCGGGTTTCAATACAGGTATCGGACAGTTGATTGGGAAACCAAAAACAAAAATATTAATATTTGGTGGAAAGTTTTGATTTTGATATTTTCTCACATTTGATGTGTTTGTTGGGGCATATGGAAAATATAGTGAATTGAATCTTTATTATATAAAGTTGATAACTTTCTTAATTAGAGGTCTCGGGTTCAAATTAGGTAAAGAGTTTCCTTTGTTTGGGAGTATTTTATCCCTAAGGTGGGATTTCCAATGCAAAATTTGGATTTAGTCGGGTTTCAATGCGGGTACCGGACACCGAGTTTGAGAAACCAAAAACAAAAGTTGATAACTTTGTTGCATTTGGTGGGGAGTTTTTGATATTGATTGTGATTTTGAAAGTTTTTCTCACACTTCAATGAGTTTGTTGGAGCATGTAGTGAATTTAGTGAAGAACTGAATCTTTATTTTGTAAAGTTGATAACTTTCTTAACTAGTGGTGTTTGGTTCAAGCCTGGCTAGGAGTCTCCCTTTGTTAGGGAGCTTTTATCCCCAATGTGGGACTTTCCAGGATGAATCTAGAATTAGTCGCTCCCAATGTAGGTATTGGACGGACATTCGGTTAATCAAAAACAAAACTTGGTTATGCTTTTGGTACTCTTTTCTCACATCAGAATGAGTTTGTTGAGGCATGTAGAAAGTATAGTGATGAACTGAATCTTTGTTCTGTAAAGTTAATAACTTTTCTAACCAAAGGTGTCGGGTTTGATATGAGGTAGGGAGCCTCTATTGTAACGGATCATTTTATCCTCCAATGTGGGACTTTCCGACACGAATATGGATTTAGTCAGGTCCCAATGTGGGTACTAGACACTGGGTTGGGACACCAAAAACAGACTTTGTTACATTTGGTGGAAAGTTTTTTGCTTTTTTTCTTACATTTGAATGCCCGTGTTAGTATCATTTTAGTTAGAAACTGCAAATATAAATTATAATGGTTGTTTACTTAGAACCAAATATTTTGAGTTTGCAAATGCTTCTATTCAAAATTCAAAGAAAATTCTTGTATTATTAGATGCTCTTCATAAATCTTGAAACTGGATATATTCCGTATGTTCTCAAAACCGAAGATTTTAGTTTAACTTAATTTAAGTTGCTTGATTGTGCAAATGTTTCTCTAAACATTGTCCTTTTTTTTAAAAAGTTTTTTTAAGATGCTTGAATACTATTTCTCGTCTTTTTGTCTTTCCAAATTGTTTAAATTCTCAATTATCTTGTAACTCAAATGATATCATTTCAGGGGCATTTGCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTT</genome_strand>
        <mrna_strand>AAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAATGGCAACCAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAAAGTTCTATTCCTTTTCCTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATTTGCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAAAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAAGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264446" ref_strand="+" ref_description="SGN-E264446 [cLEG-67-P3]">
      <seq>gaaaattcttctggttgttttgattgggttattagcgtggggttatcaagcaacacgaccacctccccctaagacctgtggatccccagatggccctcccgtcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattaggtctaggatccaaattctatgttatgggattttcaatgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="21071" stop="19968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20771" g_stop="20522" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20440" g_stop="20268" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="423" r_length="173" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E264446" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20771" e_stop="20522"/>
          <exon e_start="20440" e_stop="20268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGG</genome_strand>
        <mrna_strand>GAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCCAAATTCTATGTTATGGGATTTTCAATGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377607" ref_strand="+" ref_description="SGN-E377607 [TUS-20-C10](-)">
      <seq>aaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattttacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttgttgataattatatcccacgtaagtcgttgggactcttcaaaaatattgttatatacttgcatgtaagtcggatcttccaaatactttacatttttgaagagttcgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24292" stop="22047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23992" g_stop="23795" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="22958" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="692" r_length="494" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22957" i_stop="22364" i_length="594">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.436" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22363" g_stop="22347" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="709" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E377607" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23992" e_stop="23795"/>
          <exon e_start="23451" e_stop="22958"/>
          <exon e_start="22363" e_stop="22347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATATCAATAACATTGTGTAATATTGGATTCTATGACTCTTGTCATTGAACAAACTAGTTAATATTTAATAAGGACTTTGAAAGTATACGCGGTGTCAAGATTTTCAGTAAGCGTTTTAAAATTTGGAAAAAATAAATACACGAAGTAATCGAATGGGGTTCGACATCTATTATATAAATCTAAATCATGTATAAATAATATAATTTTTCGCTGAAAGAGGTTCAAACCTCCTAGCAATAAGCTAGCTCCGCCCCGGGTCTGAAGTAGTCGCTAATAGATATCTTATGAAATTAGTTGAGAAATACACAAATACGGTTAATATTTGAAAAATATTACTATATATTAAAAAGAAATTATTTATTGTTTTGAGAGTCATTTTTTTTAAAATAAAATATAAGGGTAAAAAATAAAGGAAGAAAGAAAATTGCCAAATGATAGATCATATGCTAAAAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTTTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222561" ref_strand="+" ref_description="SGN-E222561 [cLEL-16-M9](-)">
      <seq>gagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttgttgataattatatcccacgtaagtcgttgggactcttcaaaaatattgttatatacttgcatgtaagtcggatcttccaaatactttacatttttgaagagttcgattaacattgtttttttgatacccataacattgtgtaatattggattctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23724" stop="22614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23424" g_stop="22915" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="528"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E222561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23424" e_stop="22915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATATCAATAACATTGTGTAATATTGGATTCT</genome_strand>
        <mrna_strand>GAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATACCCATAACATTGTGTAATATTGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222472" ref_strand="+" ref_description="SGN-E222472 [cLEL-16-M9](-)">
      <seq>gtaccagtcattctacaacgatttcatcgcgaagaaactaccataggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttgttgataattatatcccacgtaagtcgttgggactcttcaaaaatattgttatatacttgcatgtaagtcggatcttccaaatactttacatttttgaagagttcgattaacattgtttttttgatatcaataacattgtgtaatattggattctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23598" stop="22614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23298" g_stop="22915" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="404"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E222472" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23298" e_stop="22915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCAGTCATTCTACAACGA-TTCATCGCGAAGAAACTACCAT-GGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATATCAATAACATTGTGTAATATTGGATTCT</genome_strand>
        <mrna_strand>GTACCAGTCATTCTACAACGATTTCATCGCGAAGAAACTACCATAGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATATCAATAACATTGTGTAATATTGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310575" ref_strand="+" ref_description="SGN-E310575 [cLEZ-19-D12]">
      <seq>aatccaatattacacaatgttattgatatcaaaaaaacaatgttaatcgaactcttcaagaatgtaaagtctttggaagatccgacttacatgcaagtatataacaatatttttgaagagtcccaacgacttacgggggatgtaattatcaacaaaatattcaaatttgttcactgacaaaaaaggatcgttgaatccaatactaaaaccaatagcccctttttagcttttacataacaaaaggctctccaagtaaaaatgtcttcataactttatctcccattccttcagcccatggaaacatatgacctccacctttcatttcatgatagtgaatccatggtagtttcttcgcgatgaatcgttgtagaatgactggtacatgcccgtctttatcgccttgccagatgtgaacggacccttccccgttatggaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="22617" stop="23657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22917" g_stop="23357" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E310575" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22917" e_stop="23357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAATATTACACAATGTTATTGATATCAAAAAAACAATGTTAATCGAACTCTTCAAAAATGTAAAGTATTTGGAAGATCCGACTTACATGCAAGTATATAACAATATTTTTGAAGAGTCCCAACGACTTACGTGGGATATAATTATCAACAAAATATTCAAATTTGTTCAATGACAAAAAATGATCGTTGAATCCAATACTAAAACCAATAGCCCCTTTTTAGCTTTTACATAACAAAAGGCTCTCCAAGTAAAAATGTCTTCATAACTTTATCTCCCATTCCTTCAGCCCATGGAAACATATGACCTCCACCTTTCATTTCATGATAGTGAATCCATGGTAGTTTCTTCGCGATGAATCGTTGTAGAATGACTGGTACATGCCCGTCTTCATCGCCTTGCCAGATGTGAACGGACCCTTCCCCGTTATGGAATGGGT</genome_strand>
        <mrna_strand>AATCCAATATTACACAATGTTATTGATATCAAAAAAACAATGTTAATCGAACTCTTCAAGAATGTAAAGTCTTTGGAAGATCCGACTTACATGCAAGTATATAACAATATTTTTGAAGAGTCCCAACGACTTACGGGGGATGTAATTATCAACAAAATATTCAAATTTGTTCACTGACAAAAAAGGATCGTTGAATCCAATACTAAAACCAATAGCCCCTTTTTAGCTTTTACATAACAAAAGGCTCTCCAAGTAAAAATGTCTTCATAACTTTATCTCCCATTCCTTCAGCCCATGGAAACATATGACCTCCACCTTTCATTTCATGATAGTGAATCCATGGTAGTTTCTTCGCGATGAATCGTTGTAGAATGACTGGTACATGCCCGTCTTTATCGCCTTGCCAGATGTGAACGGACCCTTCCCCGTTATGGAATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392822" ref_strand="+" ref_description="SGN-E392822 [TUS-37-C22]">
      <seq>tcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaataaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcatctatcattttttgtcattgaacaaatttgaatattttgttgataattatatcccacgtaagtcgttgggactcttcaaacatattgttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23713" stop="22714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23413" g_stop="23014" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E392822" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23413" e_stop="23014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATA</genome_strand>
        <mrna_strand>TCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAATAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCATCTATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAACATATTGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393015" ref_strand="+" ref_description="SGN-E393015 [TUS-37-C22](-)">
      <seq>tcgcgacttaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttgttgataattatatcccacgtaagtcgttgggactcttcaaaaatattgttatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23713" stop="22714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23413" g_stop="23019" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="415"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E393015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23413" e_stop="23019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTT</genome_strand>
        <mrna_strand>TCGCGACTTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392812" ref_strand="+" ref_description="SGN-E392812 [TUS-37-A20]">
      <seq>tcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttgttgataattatatcccacgtaagtcgttgggactcttcaaaaatattgttatataaaaaaaaaaaaaaaaaagaggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23713" stop="22045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23413" g_stop="23019" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="419"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E392812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23413" e_stop="23019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTT</genome_strand>
        <mrna_strand>TCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298781" ref_strand="+" ref_description="SGN-E298781 [cLET-44-K23]">
      <seq>cgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttggtgataattatatcccacgtaagtcgttgggactcttcaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23712" stop="22724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23412" g_stop="23024" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E298781" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23412" e_stop="23024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATA</genome_strand>
        <mrna_strand>CGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGGTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618782" ref_strand="-" ref_description="SGN-E618782 [69464]">
      <seq>ctgcaaacttgactaaacaagcatactacgaacagctcgtgcaggatcaatggacacttcggattgcacactattttccatggctgacttactggtggaacactcaaaaattgtttccttcttccagcgttgcaacgggcagcgaggatattcttttagagcaagacagagttctaatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtatgagtccatccatcgcgacctaatggtaggtttcgggacatgggaatttgatccgatggaactagtaaaccctttccctaatggggaaggctccgttcacatatggcaaggtgatgaagacgggcatgtaccagtcattctacaacgatttatcgcgaagaaactaccatggattcactatcatgaaatgaaaggaggaggtcatatgtttccatgggctgaaggaatgggagataaagtcatgaagacatttttacttggggagccttttgttatgtaaaagctataaagggctattggttttactattggattcaatgatctttttttgtcattgaacaaatttgaatattttgttaataattaaattctactttaagtcgttgagactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24306" stop="22732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24006" g_stop="23795" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="23032" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="632" r_length="420" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E618782" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618782" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24006" e_stop="23795"/>
          <exon e_start="23451" e_stop="23032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCAC-GTAAGTCGTTGGGACTCTT</genome_strand>
        <mrna_strand>CTGCAAACTTGACTAAACAAGCATACTACGAACAGCTCGTGCAGGATCAATGGACACTTCGGATTGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTGTTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTATGAGTCCATCCATCGCGACCTAATGGTAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGTAAACCCTTTCCCTAATGGGGAAGGCTCCGTTCACATATGGCAAGGTGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTTATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGAGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTCATGAAGACATTTTTACTTGGGGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGCTATTGGTTTTACTATTGGATTCAATGATCTTTTTTTGTCATTGAACAAATTTGAATATTTTGTTAATAATTAAATTCTACTTTAAGTCGTTGAGACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397343" ref_strand="+" ref_description="SGN-E397343 [TUS-45-D23](-)">
      <seq>ctcaagtatattcctcacagattggctggagcaattcttctaacaccagtgactaactactggtggggtagtttcccagcaaacttgactaaacaagcgtactacgaacagctcgtgcaggatcaatggacgttgcggattgcacactacttaccatggctgacttactggtggaacactcaaagattgtttccttcttccagcgttgcaacgttcagtgaggatattctgttcgagcaagacagagttttaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaaatccattccctaacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattttacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaatatgtagttaataattaaattctacttaagttgattttagctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24707" stop="22047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24407" g_stop="24388" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.791" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24062" g_stop="23795" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="288" r_length="268" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23451" g_stop="23051" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="681" r_length="393" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="716"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E397343" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24407" e_stop="24388"/>
          <exon e_start="24062" e_stop="23795"/>
          <exon e_start="23451" e_stop="23051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCAC</genome_strand>
        <mrna_strand>CTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTTTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTTTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGC------TTTTAGTATTGGATTCAATGATCA-TTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357935" ref_strand="+" ref_description="SGN-E357935 [cTOS-24-H18]">
      <seq>ggtggggtagtttcccagcaaacttgactaaacaagcgtactacgaacagctcgtgcaggatcaatggacgttgcggattgcacactacttaccatggctgacttactggtggaacactcaaagattgtttccttcttccagcgttgcaacgttcagtgaggatattctgttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaaatccattccctaacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaatatgtagttaataattaaattctacttaagttgattttagctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24321" stop="22741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24021" g_stop="23795" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="23051" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="620" r_length="393" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E357935" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24021" e_stop="23795"/>
          <exon e_start="23451" e_stop="23051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCAC</genome_strand>
        <mrna_strand>GGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGC------TTTTAGTATTGGATTCAATGATCA-TTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352280" ref_strand="+" ref_description="SGN-E352280 [cTOS-9-A11]">
      <seq>ggatattctgttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaaatccattccctaacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaatatgtagttaataattaaattctacttaagttgattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24161" stop="22741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23861" g_stop="23795" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="23051" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="460" r_length="393" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="484"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E352280" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23861" e_stop="23795"/>
          <exon e_start="23451" e_stop="23051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCAC</genome_strand>
        <mrna_strand>GGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGC------TTTTAGTATTGGATTCAATGATCA-TTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616591" ref_strand="+" ref_description="SGN-E616591 [90059]">
      <seq>cttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtcaatatcgggatctggtaagacaacaaggggagtatgagtcaatccaccgcgacataattgatagggttcgggacatgggaatttgatccaatggaactaagaaaaccctttccctaacggggaaggctccgttcacatatggcaaggtgatgaagacgggcatgtaccagtcaaactacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggaggaggacatatgtttccatgggctgaaggaatgggagataaagtcatgaagacttttttacttggagagccttttgttatgtaaaagctataaggggctattggtgttagtattggattcaatgactctttttgtcattggacaaatttgaatattttgctaataataaaattctacttaaagacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24151" stop="22741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23852" g_stop="23795" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="23051" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="459" r_length="401" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="480"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E616591" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23852" e_stop="23795"/>
          <exon e_start="23451" e_stop="23051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAA-TGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACT-AGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCAC</genome_strand>
        <mrna_strand>CTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTCAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GATCTGGTAAGACAACAAGGGGAGTATGAGTCAATCCACCGCGACATAATTGATAGGGTTCGGGACATGGGAATTTGATCCAATGGAACTAAGAAAACCCTTTCCCTAACGGGGAAGGCTCCGTTCACATATGGCAAGGTGATGAAGACGGGCATGTACCAGTCAAACTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGAGGAGGACATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTCATGAAGACTTTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCT-ATAAGGGGCTATTGGTGTTAGTATTGGATTCAATGA-CTCTTTTTGTCATTGGACAAATTTGAATATTTTGCTAATAATAAAATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397467" ref_strand="+" ref_description="SGN-E397467 [TUS-45-D24](-)">
      <seq>gtaagacagcaaggggagtacgagttcttccctcgccgacataatgatagggttcgggacatgggagtaaaataagatggaactagaaaatccattccctaacggggaagggtccgttcacatttggcaaggcgatgaagacgggcatgtaccagtcattttacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaataggtagttaataattaaattctacttaagttgattttagatagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23745" stop="22047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23445" g_stop="23051" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="423"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E397467" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23445" e_stop="23051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGACAGCAAGGGGAGTACGAGTCCATCCATCG-CGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCAC</genome_strand>
        <mrna_strand>GTAAGACAGCAAGGGGAGTACGAGTTCTTCCCTCGCCGACATAATGATAGGGTTCGGGACATGGGAGTAAAATAAGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATTTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTTTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGC------TTTTAGTATTGGATTCAATGATCA-TTTTTGTCATTGAACAAATTTGAATAGGTAGTTAATAATTAAATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431549" ref_strand="-" ref_description="SGN-E431549 [STM-55-L23]">
      <seq>tttccatggctgacttactggtggaacactcaaaaattgtttctttcttccagcgttgcaacgggcagcgaggatattcttttagagcaagacagagttctaatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtatgagtccatccatcgcgacctaatggtaggtttcgggacatgggaatttgatccgatggaactagtaaaccctttccctaatggggaaggctccgttcacatatggcaaggtgatgaagacgggcatgtaccagtcattctacaacgatttatcgcgaagaaactaccatggattcactatcatgaaatgaaaggaggaggtcatatgtttccatgggctgaaggaatgggagataaagtcatgaagacatttttacttggggagccttttgttatgtaaaagctataaagggctattggttttactattggattcaatgatctttttttgtcattgaacaaatttgaatatgtgataataattaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24232" stop="22754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23932" g_stop="23795" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="23053" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="535" r_length="397" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E431549" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23932" e_stop="23795"/>
          <exon e_start="23451" e_stop="23053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCC</genome_strand>
        <mrna_strand>TTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTGTTTCTTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTATGAGTCCATCCATCGCGACCTAATGGTAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGTAAACCCTTTCCCTAATGGGGAAGGCTCCGTTCACATATGGCAAGGTGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTTATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGAGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTCATGAAGACATTTTTACTTGGGGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGCTATTGGTTTTACTATTGGATTCAATGATCTTTTTTTGTCATTGAACAAATTTGAATA-TGTGATAATAATTAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393014" ref_strand="+" ref_description="SGN-E393014 [TUS-37-C20]">
      <seq>tcgcgacctaatgatatgtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcatttttttttttttgtcattgaacaaatttgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23713" stop="22773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23413" g_stop="23073" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E393014" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23413" e_stop="23073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATAT</genome_strand>
        <mrna_strand>TCGCGACCTAATGATATGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCATTTTTTTTTTTTTGTCATTGAACAAATTTGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303777" ref_strand="+" ref_description="SGN-E303777 [cLEX-4-I4]">
      <seq>acaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttatagtattggattcaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24290" stop="22803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23990" g_stop="23795" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="23103" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="545" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E303777" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23990" e_stop="23795"/>
          <exon e_start="23451" e_stop="23103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGAT</genome_strand>
        <mrna_strand>ACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTATAGTATTGGATTCAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377608" ref_strand="+" ref_description="SGN-E377608 [TUS-20-C10]">
      <seq>gactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24810" stop="22856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24510" g_stop="24388" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24062" g_stop="23795" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="391" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23451" g_stop="23156" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="687" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E377608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24510" e_stop="24388"/>
          <exon e_start="24062" e_stop="23795"/>
          <exon e_start="23451" e_stop="23156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTT</genome_strand>
        <mrna_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232965" ref_strand="+" ref_description="SGN-E232965 [cLED-6-G6]">
      <seq>gactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24810" stop="22939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24510" g_stop="24388" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24062" g_stop="23795" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="391" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23451" g_stop="23239" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="604" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E232965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24510" e_stop="24388"/>
          <exon e_start="24062" e_stop="23795"/>
          <exon e_start="23451" e_stop="23239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAA</genome_strand>
        <mrna_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338620" ref_strand="+" ref_description="SGN-E338620 [cTOE-15-B1]">
      <seq>caaagaccttagctcttgatattgaagaattagttgatcaattggaattgggacctaaattttatgttataggattttctatgggtggacaagctgtttggggtcttctcaagtatattcctcacagattggctggagcaattcttctaacaccagtgactaactacctggtggggtagtttcccagcaaacttgactaaacaagcgtacctacgaaccagctcgtgcaggatcaatggaccgttgcggattgcaccactacttacccatggctgacttactggtggaaccactcaaagattgtttccttcttccagcgttgcaacgttcagtgaggatattctgttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccctccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24814" stop="23058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24514" g_stop="24388" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24062" g_stop="23795" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="402" r_length="275" r_score="0.869"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23451" g_stop="23358" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="496" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E338620" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24514" e_stop="24388"/>
          <exon e_start="24062" e_stop="23795"/>
          <exon e_start="23451" e_stop="23358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTA-CTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTA-CTACGAA-CAGCTTGTGCAGGATCAATGGA-CGCTTCGCATCGCA-CACTA-TTTTCCATGGCTGACTTACTGGTGGAA-CACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAA</genome_strand>
        <mrna_strand>CAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGTCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACCTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACCTACGAACCAGCTCGTGCAGGATCAATGGACCGTTGCGGATTGCACCACTACTTACCCATGGCTGACTTACTGGTGGAACCACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCCTCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241841" ref_strand="+" ref_description="SGN-E241841 [cLED-27-O23]">
      <seq>gactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24810" stop="23068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24510" g_stop="24388" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24062" g_stop="23795" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="391" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23451" g_stop="23368" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="475" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E241841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24510" e_stop="24388"/>
          <exon e_start="24062" e_stop="23795"/>
          <exon e_start="23451" e_stop="23368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATG</genome_strand>
        <mrna_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710338" ref_strand="+" ref_description="SGN-E710338 [FA55AE05]">
      <seq>gcactaggccaccaccgaagatttgtggttcatcaaatatctcccatcagaaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccaacgttgcaacgggcagcgaggatattcttttaaaacaagacagagttcttatgcctatctttgattcatatcacagcaaatatcgggacttggtaccacagcaaggggagtacgagtccatcccatcgcgacctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="25728" stop="23100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25337" g_stop="25237" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="155" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25236" i_stop="24600" i_length="637">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24599" g_stop="24388" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="367" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24062" g_stop="23795" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="635" r_length="268" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23451" g_stop="23400" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="688" r_length="53" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E710338" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25337" e_stop="25237"/>
          <exon e_start="24599" e_stop="24388"/>
          <exon e_start="24062" e_stop="23795"/>
          <exon e_start="23451" e_stop="23400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCAT-CCATCGCGACCTAATGA</genome_strand>
        <mrna_strand>AAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAACGTTGCAACGGGCAGCGAGGATATTCTTTTAAAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCACAGCAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTACCACAGCAAGGGGAGTACGAGTCCATCCCATCGCGACCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245339" ref_strand="+" ref_description="SGN-E245339 [cLEF-44-H22]">
      <seq>tttctgatgggagatatttggcatataaagaaaatggtgtgcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgtatgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="25667" stop="23594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25367" g_stop="25233" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25232" i_stop="24600" i_length="633">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24599" g_stop="24388" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="347" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24062" g_stop="23894" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="516" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E245339" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25367" e_stop="25233"/>
          <exon e_start="24599" e_stop="24388"/>
          <exon e_start="24062" e_stop="23894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTA</genome_strand>
        <mrna_strand>TTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTGCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271028" ref_strand="+" ref_description="SGN-E271028 [cLEM-22-P17]">
      <seq>ctgattggggccttctcaagtatattcctcacagattggctggagcaattcttctaacaccactgactaactactggtggggtagtttcccagcaaacttgactaaacaagcgtactacgaacagctcgtgcaagatcaatggacgttgcggattgcacactacttaccataggctgacttactggtggaacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24721" stop="23602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24421" g_stop="24388" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.791" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24062" g_stop="23902" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="196" r_length="162" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E271028" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24421" e_stop="24388"/>
          <exon e_start="24062" e_stop="23902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCAT-GGCTGACTTACTGGTGGAACACTC</genome_strand>
        <mrna_strand>CTGATTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCACTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAAGATCAATGGACGTTGCGGATTGCACACTACTTACCATAGGCTGACTTACTGGTGGAACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559204" ref_strand="+" ref_description="SGN-E559204 [18665]">
      <seq>tttctaagggtattttgatcaaaattttcttgttttcttgaaaatctttccaatttttttttggaatgatgataaatatgatagcaatttttggtattgtgatattggcactaatttatagggcaattactccaccatcaccaaagatttgtggttcacgtaatggacctttaattacagcaccaagagttaagctttctgatgggagatatttggcttataaagaaaatggtgttcctagagatcaagcaaaacacaaatttgttttcattcatggctttgattgtgttaaacatgatgttgctttgctcaccactatttctcctgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagaccttagctcttgatatagaggaattagctgatcaattggaattgggatctaaattttatgtcatgggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcatagattggctggagcaattcttctaacacctgtgactaactactggtggggtagttttcctgcaaacttaactaaacaagcatactacgaacagctcgtgcaggatcaatggacgttacgaattgcacactattttccatggctgacttactggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="25833" stop="23610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25499" g_stop="25237" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="326" r_length="263" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25236" i_stop="24600" i_length="637">
            <donor d_prob="0.979" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24599" g_stop="24388" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="538" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24062" g_stop="23910" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="691" r_length="153" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E559204" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25499" e_stop="25237"/>
          <exon e_start="24599" e_stop="24388"/>
          <exon e_start="24062" e_stop="23910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTG</genome_strand>
        <mrna_strand>GAATGATGATAAATATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAGGGCAATTACTCCACCATCACCAAAGATTTGTGGTTCACGTAATGGACCTTTAATTACAGCACCAAGAGTTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATCAAGCAAAACACAAATTTGTTTTCATTCATGGCTTTGATTGTGTTAAACATGATGTTGCTTTGCTCACCACTATTTCTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACCTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTGGGATCTAAATTTTATGTCATGGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCATAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCTGTGACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTAACTAAACAAGCATACTACGAACAGCTCGTGCAGGATCAATGGACGTTACGAATTGCACACTATTTTCCATGGCTGACTTACTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464568" ref_strand="+" ref_description="SGN-E464568 [cPRO-18-K14]">
      <seq>atgagctgagactcagatctgttcagtgttcctttttgtaaaattttgagtgtaaattacagaatttgtaatttcaaaatcaagaatttgctggagctgaaaaaaatggcaggtggggcaacaaggaaaatttcagcagcttcagctagggctcatactcgtaaagctaagcaaaagacttcttttcctcttccttctggaatgatgagaaatgtgattgccctttctggaattgtgatattggcactgatttatagggcaattatgccactgccaccaaagatttgtggttcaccaaatggacctctaattacagcaccaagagtgaagctttctgatgggagatatttggcatataaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgttagacatgatgttgctttgctcacaactacttctcctgagcttatgcaaagcttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagaccttagctcttgatatagaggaattagctgatcaattggaattaggatctaaattttatgttatgggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacctgtgactaactactgggtggggtagtttttcctgcaaacttgactaaacnagcatactacgaacagctcgtgcaggatcaatggacacttcggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="27861" stop="23641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27561" g_stop="27360" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25499" g_stop="25237" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="462" r_length="263" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25236" i_stop="24600" i_length="637">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24599" g_stop="24388" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="674" r_length="212" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24062" g_stop="23941" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="798" r_length="124" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E464568" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27561" e_stop="27360"/>
          <exon e_start="25499" e_stop="25237"/>
          <exon e_start="24599" e_stop="24388"/>
          <exon e_start="24062" e_stop="23941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCTGAGACACAGATCTACTCAGTGTTCCTTTTTGTAAAATTTTAGAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTACAGCTGAAAAAAAAATGGCAGGTGGGTCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTGGTGGGTTTTTCATATTTTTTCAATTTTATTTTATCATATGTTGAAAATATTGTGAAGAATTGAATTTTTATTATGTAAAGTTGATAACTTTGTTTAATTAGAAGTCTCGGGTTTGAGCTGAGGTTCAGATATGTCTTTGTTATAGCTCTGATGTGGGATTTCTTGGCGCGAATATGGGTTTAGTTGGGTTGGATTCTAATACGGGTATCGGACACTTGGTTGAGACCAAAAGCAAAAGTTGATAACTTTGTTTAATTAGAGATGTCGGGTTTGAGCTAAGGTAGAGAGTTGTCTTGGTTAGGGAGTGTATTAGCTCTAATGTGGGATTTCTTGGCACGAATGTGGGTTTAGTTGGGTTGGGTCCTAATTCGGATTTCGGACACTTGGTTGAGAAACCAAAAATAAAAGTTGATTACTTTTTTAAGTAGACGTCTCGGATTTGAGCTGAGATAGGAAGTTTCCTTTTGTTAGGGAGTATGTTAGCTCTAATGTGGGATTTCTTGGCCCGAATATGGGTTTAGTTGGGTTGGGTCCTAATTCGGGTTTCAAATACTTGGTTGAGAAACCAAAAACAAAAGTTGATTACTTTCTTAGCTAGACGTATCAGATTTGAGCTGAGGTAGGAAGTTGCCTTTGTTAGGAAATATCTTAGCTCTAATGTGGGATTTCTTGGCGTGAATATGGATTTAGTTGGGTTGAGTCCTAATTCGGGTTTCAGTCACTTGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTTTTAACTAGAGGTCTTGGGTTTGAGCTGGAGTAAGGAGTTGCCATTGTTAAATAGTATTTTTTCACTCAATGTAGGACTTTCTTGATTTAGGTGGGTTGGGTCTCAATGCAGGCACCGGACACTAGGTTGAGAAATAGAAGTTGATAACTTTCTTAACTAGAGGTGTCGGGCTTGAGCCAGAGTAAGGAGTTGTCATTGTTAAAGATTATTTTTTTCACTCGATGTAGGAATTTCTGCATTTAGGTGGGTTGGATCTCAATGCAGGTACCGTACACCGGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTGTTAGATTTGGTGGGAAGTTTTTATTTTGCTTATGATTTTGATAGTTTTTCTCACATTTGGATGAGTTTGTTATGTGAATTGATAACTTTCTTAACCAAATGTGTCGGGTTCGAGCCGGGGTAACGAGTCGTCCTTGTTAGAGGGAGCATTTTATCCCCCAATGTAAGACTTCTTCCCAGCACAAATCCGGATTTAGTCAAGTCAGATGATACTGGTTTGGGAAACCAAAAACAGAAGTTGATAACTTTGTTGCATTTGGTGGGAAGTTTTGATTTTTGATTAGGGCAGCCGTTGTTTAGAGAGCATTTTATCCCCAATGTAGAATTTTCCAGTGCAAATTTGCATTTTGTTGGGTATCAATGCGGAAATTTAGGTAGAAAAACACGCCTGGAGCATTACGTTTAATATCTTTAAAGCTCATTGAACTAATGGGACTTATAGAAAAGAAAACATGCATATCAAGAATAGTAAAGCAACACAAAGTTATTGTGTTGGTGTAAAAATTCAAAATAGAAGTTTCAATACTATAAATATTCAGCAAACAAAATTTACTAGTTCTTTGCTCAGTTTTCCCTTTTTATTAAATAGCAGTTGAACAAGCTTATGCTATACAAATACATAAATTATTTTATATGACATAAGTTTATTAAATTTTTTGTTTATTTGCGGGTGCATGTTTACTTGGCATATTTGTTTTTATTTTTGATGTTTCCTAAGGGAAGGTTCTTGTTCATCAAAAAACGTTTCTTGATTTCTGTTCTTGTTTTCTTGAAATCTTTCCATTTTCAGGAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACT-GGTGGGGTAG-TTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCG</genome_strand>
        <mrna_strand>ATGAGCTGAGACTCAGATCTGTTCAGTGTTCCTTTTTGTAAAATTTT-GAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTGGAGCTG--AAAAAAATGGCAGGTGGGGCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTTCCTCTTCCTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGATGAGAAATGTGATTGCCCTTTCTGGAATTGTGATATTGGCACTGATTTATAGGGCAATTATGCCACTGCCACCAAAGATTTGTGGTTCACCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTACTTCTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGCTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACCTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAATTTTATGTTATGGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCTGTGACTAACTACTGGGTGGGGTAGTTTTTCCTGCAAACTTGACTAAACNAGCATACTACGAACAGCTCGTGCAGGATCAATGGACACTTCGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717499" ref_strand="+" ref_description="SGN-E717499 [FC01BF09]">
      <seq>agatctactcagtgtccctttttgtaaaattttagagtgtaaattacagaatttgtaatttcaaaatcaagaatttgctacagctgaaaaaaaaatggcaggtgggtcaacaaggaaaatttcagcagcttcagctagggctcatactcgtaaagctaagcaaaagacttcttttcctcttccttttggaatgatgagaaatatgatagccctttttggaatagtgatattggcactgatttatagggcaattatgcctccaccaccgaagatttgtggttcatcaaatggacctctaattacagcaccaagagtgaagctttctgatgggagatatttggcatataaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="27847" stop="23651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27547" g_stop="27360" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25499" g_stop="25237" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="451" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25236" i_stop="24600" i_length="637">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24599" g_stop="24388" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="663" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24062" g_stop="23951" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="775" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E717499" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27547" e_stop="27360"/>
          <exon e_start="25499" e_stop="25237"/>
          <exon e_start="24599" e_stop="24388"/>
          <exon e_start="24062" e_stop="23951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTACTCAGTGTTCCTTTTTGTAAAATTTTAGAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTACAGCTGAAAAAAAAATGGCAGGTGGGTCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTGGTGGGTTTTTCATATTTTTTCAATTTTATTTTATCATATGTTGAAAATATTGTGAAGAATTGAATTTTTATTATGTAAAGTTGATAACTTTGTTTAATTAGAAGTCTCGGGTTTGAGCTGAGGTTCAGATATGTCTTTGTTATAGCTCTGATGTGGGATTTCTTGGCGCGAATATGGGTTTAGTTGGGTTGGATTCTAATACGGGTATCGGACACTTGGTTGAGACCAAAAGCAAAAGTTGATAACTTTGTTTAATTAGAGATGTCGGGTTTGAGCTAAGGTAGAGAGTTGTCTTGGTTAGGGAGTGTATTAGCTCTAATGTGGGATTTCTTGGCACGAATGTGGGTTTAGTTGGGTTGGGTCCTAATTCGGATTTCGGACACTTGGTTGAGAAACCAAAAATAAAAGTTGATTACTTTTTTAAGTAGACGTCTCGGATTTGAGCTGAGATAGGAAGTTTCCTTTTGTTAGGGAGTATGTTAGCTCTAATGTGGGATTTCTTGGCCCGAATATGGGTTTAGTTGGGTTGGGTCCTAATTCGGGTTTCAAATACTTGGTTGAGAAACCAAAAACAAAAGTTGATTACTTTCTTAGCTAGACGTATCAGATTTGAGCTGAGGTAGGAAGTTGCCTTTGTTAGGAAATATCTTAGCTCTAATGTGGGATTTCTTGGCGTGAATATGGATTTAGTTGGGTTGAGTCCTAATTCGGGTTTCAGTCACTTGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTTTTAACTAGAGGTCTTGGGTTTGAGCTGGAGTAAGGAGTTGCCATTGTTAAATAGTATTTTTTCACTCAATGTAGGACTTTCTTGATTTAGGTGGGTTGGGTCTCAATGCAGGCACCGGACACTAGGTTGAGAAATAGAAGTTGATAACTTTCTTAACTAGAGGTGTCGGGCTTGAGCCAGAGTAAGGAGTTGTCATTGTTAAAGATTATTTTTTTCACTCGATGTAGGAATTTCTGCATTTAGGTGGGTTGGATCTCAATGCAGGTACCGTACACCGGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTGTTAGATTTGGTGGGAAGTTTTTATTTTGCTTATGATTTTGATAGTTTTTCTCACATTTGGATGAGTTTGTTATGTGAATTGATAACTTTCTTAACCAAATGTGTCGGGTTCGAGCCGGGGTAACGAGTCGTCCTTGTTAGAGGGAGCATTTTATCCCCCAATGTAAGACTTCTTCCCAGCACAAATCCGGATTTAGTCAAGTCAGATGATACTGGTTTGGGAAACCAAAAACAGAAGTTGATAACTTTGTTGCATTTGGTGGGAAGTTTTGATTTTTGATTAGGGCAGCCGTTGTTTAGAGAGCATTTTATCCCCAATGTAGAATTTTCCAGTGCAAATTTGCATTTTGTTGGGTATCAATGCGGAAATTTAGGTAGAAAAACACGCCTGGAGCATTACGTTTAATATCTTTAAAGCTCATTGAACTAATGGGACTTATAGAAAAGAAAACATGCATATCAAGAATAGTAAAGCAACACAAAGTTATTGTGTTGGTGTAAAAATTCAAAATAGAAGTTTCAATACTATAAATATTCAGCAAACAAAATTTACTAGTTCTTTGCTCAGTTTTCCCTTTTTATTAAATAGCAGTTGAACAAGCTTATGCTATACAAATACATAAATTATTTTATATGACATAAGTTTATTAAATTTTTTGTTTATTTGCGGGTGCATGTTTACTTGGCATATTTGTTTTTATTTTTGATGTTTCCTAAGGGAAGGTTCTTGTTCATCAAAAAACGTTTCTTGATTTCTGTTCTTGTTTTCTTGAAATCTTTCCATTTTCAGGAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTACTTTTAGTTTGCTCGCACCTCGACTATTTTAACTATGTACCTGTTACGTCCCACCAGCATAAATACGAGTACCTTTGATCTACCAATTCTTAAGCAGATGAGAAGAAGTCATTTTATGAATTGGCTTGATTGTTCCTCTTAGTATAAATTGAATCTTCAGTGAAAGTAGTTTAGTTCTTTGGATTTAACTTATAGACACTGACGATGCTAATGACTTTTACATTATCAGTTTACGTTAATTTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCACATAGGTTTCCATCTTAACTAGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACG</genome_strand>
        <mrna_strand>AGATCTACTCAGTGTCCCTTTTTGTAAAATTTTAGAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTACAGCTGAAAAAAAAATGGCAGGTGGGTCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTTCCTCTTCCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG.....................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246871" ref_strand="+" ref_description="SGN-E246871 [cLEF-41-O14]">
      <seq>ctcatactcgtaaagctaagcaaaagacttctttccctcttgcttttggaatgatgagaaatatgatagccctttttggaatagtgatattggcactgatttatagggcaattatgcctccaccaccgaagatttgtggttcatcaaatggacctctaattacagcaccaagagtgaagctttctgatgggagatatttggcatataaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgtatgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="27707" stop="24086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27407" g_stop="27360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25499" g_stop="25233" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="315" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25232" i_stop="24600" i_length="633">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24599" g_stop="24388" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="527" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E246871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27407" e_stop="27360"/>
          <exon e_start="25499" e_stop="25233"/>
          <exon e_start="24599" e_stop="24388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTGGTGGGTTTTTCATATTTTTTCAATTTTATTTTATCATATGTTGAAAATATTGTGAAGAATTGAATTTTTATTATGTAAAGTTGATAACTTTGTTTAATTAGAAGTCTCGGGTTTGAGCTGAGGTTCAGATATGTCTTTGTTATAGCTCTGATGTGGGATTTCTTGGCGCGAATATGGGTTTAGTTGGGTTGGATTCTAATACGGGTATCGGACACTTGGTTGAGACCAAAAGCAAAAGTTGATAACTTTGTTTAATTAGAGATGTCGGGTTTGAGCTAAGGTAGAGAGTTGTCTTGGTTAGGGAGTGTATTAGCTCTAATGTGGGATTTCTTGGCACGAATGTGGGTTTAGTTGGGTTGGGTCCTAATTCGGATTTCGGACACTTGGTTGAGAAACCAAAAATAAAAGTTGATTACTTTTTTAAGTAGACGTCTCGGATTTGAGCTGAGATAGGAAGTTTCCTTTTGTTAGGGAGTATGTTAGCTCTAATGTGGGATTTCTTGGCCCGAATATGGGTTTAGTTGGGTTGGGTCCTAATTCGGGTTTCAAATACTTGGTTGAGAAACCAAAAACAAAAGTTGATTACTTTCTTAGCTAGACGTATCAGATTTGAGCTGAGGTAGGAAGTTGCCTTTGTTAGGAAATATCTTAGCTCTAATGTGGGATTTCTTGGCGTGAATATGGATTTAGTTGGGTTGAGTCCTAATTCGGGTTTCAGTCACTTGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTTTTAACTAGAGGTCTTGGGTTTGAGCTGGAGTAAGGAGTTGCCATTGTTAAATAGTATTTTTTCACTCAATGTAGGACTTTCTTGATTTAGGTGGGTTGGGTCTCAATGCAGGCACCGGACACTAGGTTGAGAAATAGAAGTTGATAACTTTCTTAACTAGAGGTGTCGGGCTTGAGCCAGAGTAAGGAGTTGTCATTGTTAAAGATTATTTTTTTCACTCGATGTAGGAATTTCTGCATTTAGGTGGGTTGGATCTCAATGCAGGTACCGTACACCGGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTGTTAGATTTGGTGGGAAGTTTTTATTTTGCTTATGATTTTGATAGTTTTTCTCACATTTGGATGAGTTTGTTATGTGAATTGATAACTTTCTTAACCAAATGTGTCGGGTTCGAGCCGGGGTAACGAGTCGTCCTTGTTAGAGGGAGCATTTTATCCCCCAATGTAAGACTTCTTCCCAGCACAAATCCGGATTTAGTCAAGTCAGATGATACTGGTTTGGGAAACCAAAAACAGAAGTTGATAACTTTGTTGCATTTGGTGGGAAGTTTTGATTTTTGATTAGGGCAGCCGTTGTTTAGAGAGCATTTTATCCCCAATGTAGAATTTTCCAGTGCAAATTTGCATTTTGTTGGGTATCAATGCGGAAATTTAGGTAGAAAAACACGCCTGGAGCATTACGTTTAATATCTTTAAAGCTCATTGAACTAATGGGACTTATAGAAAAGAAAACATGCATATCAAGAATAGTAAAGCAACACAAAGTTATTGTGTTGGTGTAAAAATTCAAAATAGAAGTTTCAATACTATAAATATTCAGCAAACAAAATTTACTAGTTCTTTGCTCAGTTTTCCCTTTTTATTAAATAGCAGTTGAACAAGCTTATGCTATACAAATACATAAATTATTTTATATGACATAAGTTTATTAAATTTTTTGTTTATTTGCGGGTGCATGTTTACTTGGCATATTTGTTTTTATTTTTGATGTTTCCTAAGGGAAGGTTCTTGTTCATCAAAAAACGTTTCTTGATTTCTGTTCTTGTTTTCTTGAAATCTTTCCATTTTCAGGAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG</genome_strand>
        <mrna_strand>CTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431548" ref_strand="+" ref_description="SGN-E431548 [STM-55-L23]">
      <seq>atgagctgagactcagatctgttcagtgttcctttttgtaaaattttgagtgtaaattacagaatttgtaatttcaaaatcaagaatttgctggagctgaaaaaaatggcaggtggggcaacaaggaaaatttcagcagcttcagctagggctcatactcgtaaagctaagcaaaagacttcttttcctcttccttctggaatgatgagaaatgtgattgccctttctggaattgtgatattggcactgatttatagggcaattatgccactgccaccaaagatttgtggttcaccaaatggacctctaattacagcaccaagagtgaagctttctgatgggagatatttggcatataaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgttagacatgatgttgctttgctcacaactacttctcctgagcttatgcaaagcttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagaccttagctcttgatatagaggaattagctgatncattggaattangatctaaattttatgttatgggattttctatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="27861" stop="24131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27561" g_stop="27360" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25499" g_stop="25237" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="462" r_length="263" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25236" i_stop="24600" i_length="637">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24599" g_stop="24431" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="631" r_length="169" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E431548" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27561" e_stop="27360"/>
          <exon e_start="25499" e_stop="25237"/>
          <exon e_start="24599" e_stop="24431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCTGAGACACAGATCTACTCAGTGTTCCTTTTTGTAAAATTTTAGAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTACAGCTGAAAAAAAAATGGCAGGTGGGTCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTGGTGGGTTTTTCATATTTTTTCAATTTTATTTTATCATATGTTGAAAATATTGTGAAGAATTGAATTTTTATTATGTAAAGTTGATAACTTTGTTTAATTAGAAGTCTCGGGTTTGAGCTGAGGTTCAGATATGTCTTTGTTATAGCTCTGATGTGGGATTTCTTGGCGCGAATATGGGTTTAGTTGGGTTGGATTCTAATACGGGTATCGGACACTTGGTTGAGACCAAAAGCAAAAGTTGATAACTTTGTTTAATTAGAGATGTCGGGTTTGAGCTAAGGTAGAGAGTTGTCTTGGTTAGGGAGTGTATTAGCTCTAATGTGGGATTTCTTGGCACGAATGTGGGTTTAGTTGGGTTGGGTCCTAATTCGGATTTCGGACACTTGGTTGAGAAACCAAAAATAAAAGTTGATTACTTTTTTAAGTAGACGTCTCGGATTTGAGCTGAGATAGGAAGTTTCCTTTTGTTAGGGAGTATGTTAGCTCTAATGTGGGATTTCTTGGCCCGAATATGGGTTTAGTTGGGTTGGGTCCTAATTCGGGTTTCAAATACTTGGTTGAGAAACCAAAAACAAAAGTTGATTACTTTCTTAGCTAGACGTATCAGATTTGAGCTGAGGTAGGAAGTTGCCTTTGTTAGGAAATATCTTAGCTCTAATGTGGGATTTCTTGGCGTGAATATGGATTTAGTTGGGTTGAGTCCTAATTCGGGTTTCAGTCACTTGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTTTTAACTAGAGGTCTTGGGTTTGAGCTGGAGTAAGGAGTTGCCATTGTTAAATAGTATTTTTTCACTCAATGTAGGACTTTCTTGATTTAGGTGGGTTGGGTCTCAATGCAGGCACCGGACACTAGGTTGAGAAATAGAAGTTGATAACTTTCTTAACTAGAGGTGTCGGGCTTGAGCCAGAGTAAGGAGTTGTCATTGTTAAAGATTATTTTTTTCACTCGATGTAGGAATTTCTGCATTTAGGTGGGTTGGATCTCAATGCAGGTACCGTACACCGGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTGTTAGATTTGGTGGGAAGTTTTTATTTTGCTTATGATTTTGATAGTTTTTCTCACATTTGGATGAGTTTGTTATGTGAATTGATAACTTTCTTAACCAAATGTGTCGGGTTCGAGCCGGGGTAACGAGTCGTCCTTGTTAGAGGGAGCATTTTATCCCCCAATGTAAGACTTCTTCCCAGCACAAATCCGGATTTAGTCAAGTCAGATGATACTGGTTTGGGAAACCAAAAACAGAAGTTGATAACTTTGTTGCATTTGGTGGGAAGTTTTGATTTTTGATTAGGGCAGCCGTTGTTTAGAGAGCATTTTATCCCCAATGTAGAATTTTCCAGTGCAAATTTGCATTTTGTTGGGTATCAATGCGGAAATTTAGGTAGAAAAACACGCCTGGAGCATTACGTTTAATATCTTTAAAGCTCATTGAACTAATGGGACTTATAGAAAAGAAAACATGCATATCAAGAATAGTAAAGCAACACAAAGTTATTGTGTTGGTGTAAAAATTCAAAATAGAAGTTTCAATACTATAAATATTCAGCAAACAAAATTTACTAGTTCTTTGCTCAGTTTTCCCTTTTTATTAAATAGCAGTTGAACAAGCTTATGCTATACAAATACATAAATTATTTTATATGACATAAGTTTATTAAATTTTTTGTTTATTTGCGGGTGCATGTTTACTTGGCATATTTGTTTTTATTTTTGATGTTTCCTAAGGGAAGGTTCTTGTTCATCAAAAAACGTTTCTTGATTTCTGTTCTTGTTTTCTTGAAATCTTTCCATTTTCAGGAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGG</genome_strand>
        <mrna_strand>ATGAGCTGAGACTCAGATCTGTTCAGTGTTCCTTTTTGTAAAATTTT-GAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTGGAGCTG--AAAAAAATGGCAGGTGGGGCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTTCCTCTTCCTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGATGAGAAATGTGATTGCCCTTTCTGGAATTGTGATATTGGCACTGATTTATAGGGCAATTATGCCACTGCCACCAAAGATTTGTGGTTCACCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTACTTCTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGCTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACCTTAGCTCTTGATATAGAGGAATTAGCTGATNCATTGGAATTANGATCTAAATTTTATGTTATGGGATTTTCTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557688" ref_strand="+" ref_description="SGN-E557688 [16525]">
      <seq>acggatatgattctaacagacacgatgctgttgttgcaactggcctctctccggaggttattgaaagcttgggagtatacgttgtttcaattgatagacctggttatggtgaaagtgatcctaatccaaaacgaacagtaaagagcttggcgtttgatgtacaagaacttgctgatcaattaggacttgggtccaaattctacgtcattggattttcgatgggaggacaagctgtttggaccttgctcaaatatattcctcacagattggctggagcagctcttctagcacctgttaccaactactggtggcctaacttccccgcgaacttgtccaaggaagcgttcagccatcagcttcctcaggatatatggaatcttcgcgttgctcactaccttccgtggcttacatactggtggaacactcagaagtttttccctgcttgtagtgctgctgcttacaaccccggtgctctttcgtcccaggacctagaactaatgcccaagtatcgcggccaacagagatcttatgctcaggtgagacaacagggacaacacgagttcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="29999" stop="28317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29699" g_stop="29647" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29646" i_stop="29515" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29514" g_stop="29303" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="265" r_length="212" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29302" i_stop="29195" i_length="108">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29194" g_stop="28930" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="530" r_length="265" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28929" i_stop="28654" i_length="276">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28653" g_stop="28617" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="568" r_length="38" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E557688" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29699" e_stop="29647"/>
          <exon e_start="29514" e_stop="29303"/>
          <exon e_start="29194" e_stop="28930"/>
          <exon e_start="28653" e_stop="28617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCGGTAACTCTCCTCTCATCCGTTAATTATCTTAACTCCATCTTTATTTCTTAGTAGCTCAGTTGGTTGACTAGCTGAACTTTTTACCTTGTTCATTTTTATAACTTTTTTGTTAGTAAATTGCTGTTTTTCCAGGAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAGGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATATTCCTCACAGGTACGGACTCAAATTTATGCTTCACGTTAAAAGTACTGAGTTCACATGAGCTCGGTGTTGTAATGTTGTGTCTGGTTTGTATAAGCTCGGTTGTGTGATATGTAACAGATTGGCTGGAGCAGCTCTTCTAGCACCTGTTACCAATTACTGGTGGCCTAACTTCCCCGCGAACTTGTCCAAGGAAGCGTTCAACCAACAGCTTCCTCAGGATATATGGAATCTTCGCGTTGCTCACTACCTTCCGTGGCTTACATACTCGTGGAACACACAGAAGTTTTTCCCTGCTTGTAGTGCTGCTGCTTACAACCCCGGTGCTCTTTCGTCTCAGGACCTAGAACTAATGCCCAAGTATCGC-GCCAACAGAGATCTTTATGTAAGTGTTCTTCTCTTGAGATCATACCTCTTGTTACATTTAGCTGTTTCTCGTTCATATCGTTGACACAAGTGCAATGAAGGTCACGAACCTAAGCCAATCGCCTCTATGATATATCACCATTGACCCGTCCATGTAGGTTTGTGATACTTGTCTACATGCTTTGATTGGAGGTAGTCAGTTGAACACCCTTACTGTGTATAGATCAATAAACTTACTTTTTACCTATATATCTTTTATCTTATATACTCTTAACGAAATTTCTTGCACCCTCAGGCTCAGGTGAGACAACAAGGACTACACGAG-TCACTCT</genome_strand>
        <mrna_strand>ACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCG....................................................................................................................................GAGGTTATTGAAAGCTTGGGAGTATACGTTGTTTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTAATCCAAAACGAACAGTAAAGAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAGGACTTGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATATTCCTCACAG............................................................................................................ATTGGCTGGAGCAGCTCTTCTAGCACCTGTTACCAACTACTGGTGGCCTAACTTCCCCGCGAACTTGTCCAAGGAAGCGTTCAGCCATCAGCTTCCTCAGGATATATGGAATCTTCGCGTTGCTCACTACCTTCCGTGGCTTACATACTGGTGGAACACTCAGAAGTTTTTCCCTGCTTGTAGTGCTGCTGCTTACAACCCCGGTGCTCTTTCGTCCCAGGACCTAGAACTAATGCCCAAGTATCGCGGCCAACAGAGATC-TTAT....................................................................................................................................................................................................................................................................................GCTCAGGTGAGACAACAGGGACAACACGAGTTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304608" ref_strand="+" ref_description="SGN-E304608 [cLEX-11-F14]">
      <seq>gaacatggtcttccaagagatcaagcaaaacataagattgcgttcatccacggatatgattctaacagacacgatgctgttgttgcgactggcctctctccggtcactctcctctcatccggtaattatcttaactgcatctttatttcttagtagctcagttggttgactagctgaactttttaccttgttcatttttataacttttttgttagtaaattgctgtttttccaggaggttattgagaacttaggagtatacattgtttcaattgatagacctggttatggagaaagtgatcctaatccgaaacgaacagtgaaaagctcggcgtttgatgtacaagaacttgctgatcaattatggctcgggtccaaattctacgtcattggattttcgatgggaggacaagctgtttggaccttgctcaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="30048" stop="29013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29748" g_stop="29313" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E304608" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29748" e_stop="29313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCGGTAACTCTCCTCTCATCCGTTAATTATCTTAACTCCATCTTTATTTCTTAGTAGCTCAGTTGGTTGACTAGCTGAACTTTTTACCTTGTTCATTTTTATAACTTTTTTGTTAGTAAATTGCTGTTTTTCCAGGAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAGGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATA</genome_strand>
        <mrna_strand>GAACATGGTCTTCCAAGAGATCAAGCAAAACATAAGATTGCGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCGACTGGCCTCTCTCCGGTCACTCTCCTCTCATCCGGTAATTATCTTAACTGCATCTTTATTTCTTAGTAGCTCAGTTGGTTGACTAGCTGAACTTTTTACCTTGTTCATTTTTATAACTTTTTTGTTAGTAAATTGCTGTTTTTCCAGGAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTGAAAAGCTCGGCGTTTGATGTACAAGAACTTGCTGATCAATTATGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207324" ref_strand="+" ref_description="SGN-E207324 [cLEC-30-F14]">
      <seq>tttcctttaaattctttaagagaaaaaaaaaaaaatgagcaaaaaaatttcttcagcatcagccaggtctcatactagaaaaaataaacagatgaagagttcaattccacttcattcagggatgtttgggaaaattgtagcagtcgtctttgtggggttcgtggcatatgcttatcgagcaatgcagcctcctccatcgaaaatttgtggcgcccctgatggccctcctgttacatcacctagagttaaacttagcgatggacgatacttagcttacaaagaacatggtataccaagagatcaagcaaaacataagattgtgttcatccacggatatgattctaacagacacgatgctgttgttgcaactggcctctctccggaggttattgagaacttaggagtatacattgtttcaattgatagacctggttatggagaaagtgatcctaatccgaaacgaacagtaaaaagcttggcgtttgatgtacaagaacttgctgatcaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="31195" stop="29085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30895" g_stop="30777" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30776" i_stop="29910" i_length="867">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29909" g_stop="29647" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="382" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29646" i_stop="29515" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29514" g_stop="29385" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="512" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-E207324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30895" e_stop="30777"/>
          <exon e_start="29909" e_stop="29647"/>
          <exon e_start="29514" e_stop="29385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTAAATTCTTTAAGAGAAGAAAAAAAAAATGAGCAAAAAAATTTCTTCAGCATCAGCCAGGTCTCATACTAGAAAAAATAAACAGATGAAGAGTTCAATTCCACTTCATTCAGGTACTCAATTTTTCAAATTTTTAATTTCTTTTCTATTGGACACATTTATTTTTACGATGATATGATATGAGCGTAAATAAAGAATAAGAATTCATATGGTCGATCTCGACTTGTTTTAGAGAATATTTCATGATATGTTTGTAGCTATTAGAATGACATTTACTTACAATGAATTTCAGAAAGTTGTGATTTTTATTTGAAATTCTTCACATTTGTATAGTTTGGTTATTAATGCTCTTATGTATAATATGAGATATATTGGGTTTGTCTTGGTTGAAAAAATGAGTTAGAGGCGGAGTCAGAATTTTTAATTTTCGATTAAAGGTTAGAGTTTAATCAGAATAATTGTTGTGGCTCCCGTTCATGAAGTGTGTGACCATTTTCTTCTGAAAGGTTAAAGGTTTTAGATAGAGTACATTTTTGTTTACCTAATTATATCTTCAATACGCCTCTCAGGAGCTAATTTTTTTTATGGGTCGAGCACGTGGAATTTTTTTTCTTTTTTGAAAATGTATGGTTGTGAGACTCGATACTAAGATCTATGTTTGTTCTGATCCCATGTGAAGTATGTAACGATCTCGTCTAAATGCTTAAGTTAGAATTTAGCATATCTAGCTTGTAATCTTCTTTAAAAATGTGGTTGAAATTGTTTGAGCTAGCTTGAAATCTTGTTGAAGTCATGAAATTATGTTGGTCGGACTCTTCAAAAATGATGCTACAGCTATATGAGATCCTTAAAAATGCATAGCTATTGTGAGGACCGACACACACCTGGTTGTATTTTTGAAGAGCCCGAGCAACAGAGGCAGAGCAAGTGTGTTCTGTTTTCTTTGTTTTGAAACTTCATTCCAAGCGGTAAAATTTCAGGGATGTTTGGGAAAATTGTAGCAGTCGTCTTTGTGGGGTTCGTGGCATATGCTTATCGAGCAATGCAGCCTCCTCCATCGAAAATTTGTGGCGCCCCTGATGGCCCTCCTGTTACATCACCTAGAGTTAAACTTAGCGATGGACGATACTTAGCTTACAAAGAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCGGTAACTCTCCTCTCATCCGTTAATTATCTTAACTCCATCTTTATTTCTTAGTAGCTCAGTTGGTTGACTAGCTGAACTTTTTACCTTGTTCATTTTTATAACTTTTTTGTTAGTAAATTGCTGTTTTTCCAGGAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAG</genome_strand>
        <mrna_strand>TTTCCTTTAAATTCTTTAAGAGAAAAAAAAAAAAATGAGCAAAAAAATTTCTTCAGCATCAGCCAGGTCTCATACTAGAAAAAATAAACAGATGAAGAGTTCAATTCCACTTCATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTTGGGAAAATTGTAGCAGTCGTCTTTGTGGGGTTCGTGGCATATGCTTATCGAGCAATGCAGCCTCCTCCATCGAAAATTTGTGGCGCCCCTGATGGCCCTCCTGTTACATCACCTAGAGTTAAACTTAGCGATGGACGATACTTAGCTTACAAAGAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCG....................................................................................................................................GAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559204" ref_strand="+" ref_description="SGN-E559204 [18665]">
      <seq>tttctaagggtattttgatcaaaattttcttgttttcttgaaaatctttccaatttttttttggaatgatgataaatatgatagcaatttttggtattgtgatattggcactaatttatagggcaattactccaccatcaccaaagatttgtggttcacgtaatggacctttaattacagcaccaagagttaagctttctgatgggagatatttggcttataaagaaaatggtgttcctagagatcaagcaaaacacaaatttgttttcattcatggctttgattgtgttaaacatgatgttgctttgctcaccactatttctcctgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagaccttagctcttgatatagaggaattagctgatcaattggaattgggatctaaattttatgtcatgggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcatagattggctggagcaattcttctaacacctgtgactaactactggtggggtagttttcctgcaaacttaactaaacaagcatactacgaacagctcgtgcaggatcaatggacgttacgaattgcacactattttccatggctgacttactggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="31380" stop="33586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31680" g_stop="31953" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="326" r_length="274" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31954" i_stop="32657" i_length="704">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32658" g_stop="32869" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="538" r_length="212" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33134" g_stop="33286" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="691" r_length="153" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E559204" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31680" e_stop="31953"/>
          <exon e_start="32658" e_stop="32869"/>
          <exon e_start="33134" e_stop="33286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTATGTATCATCTTCACTTTGTTTCCTTTTATCCCCTTTTTTGAATTGTTTTATTGCGTTTTGAAGTCTAACTAGTATTAAGGCTTTTGAACAAAGATAGACTTTATTTTCATAGCTCGAATCCCAAGATGAGGGGGATTCTTTTATATAAGTATTCTTTTTTTATTTTTTGTTGTTTGGGGTCTCACTAATTTGAATTTGTGTTTTAGGAAGTTTCGCTTTTATGGCTTTTCAACAAGTGCAACTCCGTTTTTAGAGCGTGAGTCTAAGATATCTGGTTAACGATGGTGTTGTTTTAAGTATTCTTTTTGGTTTCTCAACTGGTGTCAGACACTCGTTGGAGCCTCAGACTAATCCGAATTCATGATGTATGGAAGTCTCACTTTTTAAGACTTGACTGAACGCGACTCTATTTCTAGAGTTCGAACCCTAGATCTCTGGTTAACAATGGAAGAAATACTATAAAAGATTGTTTTTAGTATTCCTTTTTGGTTCCATCACTTAGTATCCAACACTCATTTTGCAGTTCGACTAATTGATTGTTTTTACTTTTCTTTTTGGTCCCCACTAAGTGTCCAACTCCCATTTTGTAGCTCGAATATTTTGAACAAGATTTCTGATTAAGGATGTAGCAATATTTACCAGTTACCACCACTCGAATGTATTTGTGGATGTAATTAATGAAATTTTATTTATGGTTGCAGGAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTG</genome_strand>
        <mrna_strand>ATTTTTTTTTGGAATGATGATAAATATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAGGGCAATTACTCCACCATCACCAAAGATTTGTGGTTCACGTAATGGACCTTTAATTACAGCACCAAGAGTTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATCAAGCAAAACACAAATTTGTTTTCATTCATGGCTTTGATTGTGTTAAACATGATGTTGCTTTGCTCACCACTATTTCTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACCTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTGGGATCTAAATTTTATGTCATGGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCATAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCTGTGACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTAACTAAACAAGCATACTACGAACAGCTCGTGCAGGATCAATGGACGTTACGAATTGCACACTATTTTCCATGGCTGACTTACTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246871" ref_strand="+" ref_description="SGN-E246871 [cLEF-41-O14]">
      <seq>ctcatactcgtaaagctaagcaaaagacttctttccctcttgcttttggaatgatgagaaatatgatagccctttttggaatagtgatattggcactgatttatagggcaattatgcctccaccaccgaagatttgtggttcatcaaatggacctctaattacagcaccaagagtgaagctttctgatgggagatatttggcatataaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgtatgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="31379" stop="33175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31686" g_stop="31957" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="315" r_length="272" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31958" i_stop="32657" i_length="700">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32658" g_stop="32869" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="527" r_length="212" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33134" g_stop="33146" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="540" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E246871" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31686" e_stop="31957"/>
          <exon e_start="32658" e_stop="32869"/>
          <exon e_start="33134" e_stop="33146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTATGTATCATCTTCACTTTGTTTCCTTTTATCCCCTTTTTTGAATTGTTTTATTGCGTTTTGAAGTCTAACTAGTATTAAGGCTTTTGAACAAAGATAGACTTTATTTTCATAGCTCGAATCCCAAGATGAGGGGGATTCTTTTATATAAGTATTCTTTTTTTATTTTTTGTTGTTTGGGGTCTCACTAATTTGAATTTGTGTTTTAGGAAGTTTCGCTTTTATGGCTTTTCAACAAGTGCAACTCCGTTTTTAGAGCGTGAGTCTAAGATATCTGGTTAACGATGGTGTTGTTTTAAGTATTCTTTTTGGTTTCTCAACTGGTGTCAGACACTCGTTGGAGCCTCAGACTAATCCGAATTCATGATGTATGGAAGTCTCACTTTTTAAGACTTGACTGAACGCGACTCTATTTCTAGAGTTCGAACCCTAGATCTCTGGTTAACAATGGAAGAAATACTATAAAAGATTGTTTTTAGTATTCCTTTTTGGTTCCATCACTTAGTATCCAACACTCATTTTGCAGTTCGACTAATTGATTGTTTTTACTTTTCTTTTTGGTCCCCACTAAGTGTCCAACTCCCATTTTGTAGCTCGAATATTTTGAACAAGATTTCTGATTAAGGATGTAGCAATATTTACCAGTTACCACCACTCGAATGTATTTGTGGATGTAATTAATGAAATTTTATTTATGGTTGCAGGAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCA</genome_strand>
        <mrna_strand>TTTTGGAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245339" ref_strand="+" ref_description="SGN-E245339 [cLEF-44-H22]">
      <seq>tttctgatgggagatatttggcatataaagaaaatggtgtgcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgtatgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="31523" stop="33601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31823" g_stop="31957" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31958" i_stop="32657" i_length="700">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32658" g_stop="32869" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="347" r_length="212" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33134" g_stop="33301" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="515" r_length="168" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E245339" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31823" e_stop="31957"/>
          <exon e_start="32658" e_stop="32869"/>
          <exon e_start="33134" e_stop="33301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTATGTATCATCTTCACTTTGTTTCCTTTTATCCCCTTTTTTGAATTGTTTTATTGCGTTTTGAAGTCTAACTAGTATTAAGGCTTTTGAACAAAGATAGACTTTATTTTCATAGCTCGAATCCCAAGATGAGGGGGATTCTTTTATATAAGTATTCTTTTTTTATTTTTTGTTGTTTGGGGTCTCACTAATTTGAATTTGTGTTTTAGGAAGTTTCGCTTTTATGGCTTTTCAACAAGTGCAACTCCGTTTTTAGAGCGTGAGTCTAAGATATCTGGTTAACGATGGTGTTGTTTTAAGTATTCTTTTTGGTTTCTCAACTGGTGTCAGACACTCGTTGGAGCCTCAGACTAATCCGAATTCATGATGTATGGAAGTCTCACTTTTTAAGACTTGACTGAACGCGACTCTATTTCTAGAGTTCGAACCCTAGATCTCTGGTTAACAATGGAAGAAATACTATAAAAGATTGTTTTTAGTATTCCTTTTTGGTTCCATCACTTAGTATCCAACACTCATTTTGCAGTTCGACTAATTGATTGTTTTTACTTTTCTTTTTGGTCCCCACTAAGTGTCCAACTCCCATTTTGTAGCTCGAATATTTTGAACAAGATTTCTGATTAAGGATGTAGCAATATTTACCAGTTACCACCACTCGAATGTATTTGTGGATGTAATTAATGAAATTTTATTTATGGTTGCAGGAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATT</genome_strand>
        <mrna_strand>TTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTGCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710338" ref_strand="+" ref_description="SGN-E710338 [FA55AE05]">
      <seq>gcactaggccaccaccgaagatttgtggttcatcaaatatctcccatcagaaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccaacgttgcaacgggcagcgaggatattcttttaaaacaagacagagttcttatgcctatctttgattcatatcacagcaaatatcgggacttggtaccacagcaaggggagtacgagtccatcccatcgcgacctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="25048" stop="34106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31853" g_stop="31953" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="155" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31954" i_stop="32657" i_length="704">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32658" g_stop="32869" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="367" r_length="212" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33134" g_stop="33401" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="635" r_length="268" r_score="0.907"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.92"/>
            <acceptor a_prob="0.750" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33755" g_stop="33806" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="688" r_length="53" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E710338" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31853" e_stop="31953"/>
          <exon e_start="32658" e_stop="32869"/>
          <exon e_start="33134" e_stop="33401"/>
          <exon e_start="33755" e_stop="33806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTATGTATCATCTTCACTTTGTTTCCTTTTATCCCCTTTTTTGAATTGTTTTATTGCGTTTTGAAGTCTAACTAGTATTAAGGCTTTTGAACAAAGATAGACTTTATTTTCATAGCTCGAATCCCAAGATGAGGGGGATTCTTTTATATAAGTATTCTTTTTTTATTTTTTGTTGTTTGGGGTCTCACTAATTTGAATTTGTGTTTTAGGAAGTTTCGCTTTTATGGCTTTTCAACAAGTGCAACTCCGTTTTTAGAGCGTGAGTCTAAGATATCTGGTTAACGATGGTGTTGTTTTAAGTATTCTTTTTGGTTTCTCAACTGGTGTCAGACACTCGTTGGAGCCTCAGACTAATCCGAATTCATGATGTATGGAAGTCTCACTTTTTAAGACTTGACTGAACGCGACTCTATTTCTAGAGTTCGAACCCTAGATCTCTGGTTAACAATGGAAGAAATACTATAAAAGATTGTTTTTAGTATTCCTTTTTGGTTCCATCACTTAGTATCCAACACTCATTTTGCAGTTCGACTAATTGATTGTTTTTACTTTTCTTTTTGGTCCCCACTAAGTGTCCAACTCCCATTTTGTAGCTCGAATATTTTGAACAAGATTTCTGATTAAGGATGTAGCAATATTTACCAGTTACCACCACTCGAATGTATTTGTGGATGTAATTAATGAAATTTTATTTATGGTTGCAGGAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCAT-CCATCGCGACATAATGA</genome_strand>
        <mrna_strand>AAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAACGTTGCAACGGGCAGCGAGGATATTCTTTTAAAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCACAGCAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTACCACAGCAAGGGGAGTACGAGTCCATCCCATCGCGACCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338620" ref_strand="+" ref_description="SGN-E338620 [cTOE-15-B1]">
      <seq>caaagaccttagctcttgatattgaagaattagttgatcaattggaattgggacctaaattttatgttataggattttctatgggtggacaagctgtttggggtcttctcaagtatattcctcacagattggctggagcaattcttctaacaccagtgactaactacctggtggggtagtttcccagcaaacttgactaaacaagcgtacctacgaaccagctcgtgcaggatcaatggaccgttgcggattgcaccactacttacccatggctgacttactggtggaaccactcaaagattgtttccttcttccagcgttgcaacgttcagtgaggatattctgttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccctccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32443" stop="34148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32743" g_stop="32869" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33134" g_stop="33401" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="402" r_length="275" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33755" g_stop="33848" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="496" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E338620" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32743" e_stop="32869"/>
          <exon e_start="33134" e_stop="33401"/>
          <exon e_start="33755" e_stop="33848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTA-CTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTA-CTACGAA-CAGCTCGTGCAGGATCAATGGA-CGTTGCGGATTGCA-CACTACTTA-CCATGGCTGACTTACTGGTGGAA-CACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAA</genome_strand>
        <mrna_strand>CAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGTCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACCTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACCTACGAACCAGCTCGTGCAGGATCAATGGACCGTTGCGGATTGCACCACTACTTACCCATGGCTGACTTACTGGTGGAACCACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCCTCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377608" ref_strand="+" ref_description="SGN-E377608 [TUS-20-C10]">
      <seq>gactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32447" stop="34350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32747" g_stop="32869" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33134" g_stop="33401" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="391" r_length="268" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.750" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33755" g_stop="34050" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="687" r_length="296" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E377608" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32747" e_stop="32869"/>
          <exon e_start="33134" e_stop="33401"/>
          <exon e_start="33755" e_stop="34050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTT</genome_strand>
        <mrna_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232965" ref_strand="+" ref_description="SGN-E232965 [cLED-6-G6]">
      <seq>gactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32447" stop="34267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32747" g_stop="32869" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33134" g_stop="33401" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="391" r_length="268" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.750" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33755" g_stop="33967" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="604" r_length="213" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E232965" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32747" e_stop="32869"/>
          <exon e_start="33134" e_stop="33401"/>
          <exon e_start="33755" e_stop="33967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAA</genome_strand>
        <mrna_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241841" ref_strand="+" ref_description="SGN-E241841 [cLED-27-O23]">
      <seq>gactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacacccgtaactaactactggtggggtagttttcctgcaaacttgactaaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32447" stop="34138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32747" g_stop="32869" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33134" g_stop="33401" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="391" r_length="268" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.750" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33755" g_stop="33838" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="475" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E241841" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32747" e_stop="32869"/>
          <exon e_start="33134" e_stop="33401"/>
          <exon e_start="33755" e_stop="33838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATG</genome_strand>
        <mrna_strand>GACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271028" ref_strand="+" ref_description="SGN-E271028 [cLEM-22-P17]">
      <seq>ctgattggggccttctcaagtatattcctcacagattggctggagcaattcttctaacaccactgactaactactggtggggtagtttcccagcaaacttgactaaacaagcgtactacgaacagctcgtgcaagatcaatggacgttgcggattgcacactacttaccataggctgacttactggtggaacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32536" stop="33594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32836" g_stop="32869" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33134" g_stop="33294" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="196" r_length="162" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E271028" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32836" e_stop="32869"/>
          <exon e_start="33134" e_stop="33294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCAT-GGCTGACTTACTGGTGGAACACTC</genome_strand>
        <mrna_strand>CTGATTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCACTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAAGATCAATGGACGTTGCGGATTGCACACTACTTACCATAGGCTGACTTACTGGTGGAACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397343" ref_strand="+" ref_description="SGN-E397343 [TUS-45-D23](-)">
      <seq>ctcaagtatattcctcacagattggctggagcaattcttctaacaccagtgactaactactggtggggtagtttcccagcaaacttgactaaacaagcgtactacgaacagctcgtgcaggatcaatggacgttgcggattgcacactacttaccatggctgacttactggtggaacactcaaagattgtttccttcttccagcgttgcaacgttcagtgaggatattctgttcgagcaagacagagttttaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaaatccattccctaacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattttacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaatatgtagttaataattaaattctacttaagttgattttagctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32814" stop="34465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32850" g_stop="32869" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33134" g_stop="33401" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="288" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33755" g_stop="34164" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="698" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="716"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E397343" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32850" e_stop="32869"/>
          <exon e_start="33134" e_stop="33401"/>
          <exon e_start="33755" e_stop="34164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCT</genome_strand>
        <mrna_strand>CTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTTTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTTTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357935" ref_strand="+" ref_description="SGN-E357935 [cTOS-24-H18]">
      <seq>ggtggggtagtttcccagcaaacttgactaaacaagcgtactacgaacagctcgtgcaggatcaatggacgttgcggattgcacactacttaccatggctgacttactggtggaacactcaaagattgtttccttcttccagcgttgcaacgttcagtgaggatattctgttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaaatccattccctaacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaatatgtagttaataattaaattctacttaagttgattttagctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32875" stop="34465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33175" g_stop="33401" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33755" g_stop="34164" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="637" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E357935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33175" e_stop="33401"/>
          <exon e_start="33755" e_stop="34164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCT</genome_strand>
        <mrna_strand>GGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618782" ref_strand="-" ref_description="SGN-E618782 [69464]">
      <seq>ctgcaaacttgactaaacaagcatactacgaacagctcgtgcaggatcaatggacacttcggattgcacactattttccatggctgacttactggtggaacactcaaaaattgtttccttcttccagcgttgcaacgggcagcgaggatattcttttagagcaagacagagttctaatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtatgagtccatccatcgcgacctaatggtaggtttcgggacatgggaatttgatccgatggaactagtaaaccctttccctaatggggaaggctccgttcacatatggcaaggtgatgaagacgggcatgtaccagtcattctacaacgatttatcgcgaagaaactaccatggattcactatcatgaaatgaaaggaggaggtcatatgtttccatgggctgaaggaatgggagataaagtcatgaagacatttttacttggggagccttttgttatgtaaaagctataaagggctattggttttactattggattcaatgatctttttttgtcattgaacaaatttgaatattttgttaataattaaattctactttaagtcgttgagactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32890" stop="34458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33190" g_stop="33401" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.750" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33755" g_stop="34151" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="616" r_length="404" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E618782" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618782" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33190" e_stop="33401"/>
          <exon e_start="33755" e_stop="34151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGC------TTTTAGTATTGGATTCAATGATC-ATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAA</genome_strand>
        <mrna_strand>CTGCAAACTTGACTAAACAAGCATACTACGAACAGCTCGTGCAGGATCAATGGACACTTCGGATTGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTGTTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTATGAGTCCATCCATCGCGACCTAATGGTAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGTAAACCCTTTCCCTAATGGGGAAGGCTCCGTTCACATATGGCAAGGTGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTTATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGAGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTCATGAAGACATTTTTACTTGGGGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTATTGGTTTTACTATTGGATTCAATGATCTTTTTTTGTCATTGAACAAATTTGAATATTTTGTTAATAATTAAATTCTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303777" ref_strand="+" ref_description="SGN-E303777 [cLEX-4-I4]">
      <seq>acaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttatagtattggattcaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32906" stop="34393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33206" g_stop="33401" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.750" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33755" g_stop="34072" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="514" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E303777" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33206" e_stop="33401"/>
          <exon e_start="33755" e_stop="34072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGG</genome_strand>
        <mrna_strand>ACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431549" ref_strand="-" ref_description="SGN-E431549 [STM-55-L23]">
      <seq>tttccatggctgacttactggtggaacactcaaaaattgtttctttcttccagcgttgcaacgggcagcgaggatattcttttagagcaagacagagttctaatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtatgagtccatccatcgcgacctaatggtaggtttcgggacatgggaatttgatccgatggaactagtaaaccctttccctaatggggaaggctccgttcacatatggcaaggtgatgaagacgggcatgtaccagtcattctacaacgatttatcgcgaagaaactaccatggattcactatcatgaaatgaaaggaggaggtcatatgtttccatgggctgaaggaatgggagataaagtcatgaagacatttttacttggggagccttttgttatgtaaaagctataaagggctattggttttactattggattcaatgatctttttttgtcattgaacaaatttgaatatgtgataataattaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="32964" stop="34445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33264" g_stop="33401" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.750" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33755" g_stop="34145" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="535" r_length="397" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E431549" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33264" e_stop="33401"/>
          <exon e_start="33755" e_stop="34145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGC------TTTTAGTATTGGATTCAATGATC-ATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCT</genome_strand>
        <mrna_strand>TTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTGTTTCTTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTATGAGTCCATCCATCGCGACCTAATGGTAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGTAAACCCTTTCCCTAATGGGGAAGGCTCCGTTCACATATGGCAAGGTGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTTATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGAGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTCATGAAGACATTTTTACTTGGGGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTATTGGTTTTACTATTGGATTCAATGATCTTTTTTTGTCATTGAACAAATTTGAATATGT-GATAATAATTAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352280" ref_strand="+" ref_description="SGN-E352280 [cTOS-9-A11]">
      <seq>ggatattctgttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaaatccattccctaacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaatatgtagttaataattaaattctacttaagttgattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="33035" stop="34461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33335" g_stop="33401" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33755" g_stop="34161" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="474" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="484"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E352280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33335" e_stop="33401"/>
          <exon e_start="33755" e_stop="34161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTA</genome_strand>
        <mrna_strand>GGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397467" ref_strand="+" ref_description="SGN-E397467 [TUS-45-D24](-)">
      <seq>gtaagacagcaaggggagtacgagttcttccctcgccgacataatgatagggttcgggacatgggagtaaaataagatggaactagaaaatccattccctaacggggaagggtccgttcacatttggcaaggcgatgaagacgggcatgtaccagtcattttacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaataggtagttaataattaaattctacttaagttgattttagatagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="33461" stop="34465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33761" g_stop="34161" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="423"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E397467" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33761" e_stop="34161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGACAGCAAGGGGAGTACGAGTCCATCCATCG-CGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTA</genome_strand>
        <mrna_strand>GTAAGACAGCAAGGGGAGTACGAGTTCTTCCCTCGCCGACATAATGATAGGGTTCGGGACATGGGAGTAAAATAAGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATTTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTTTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATAGGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298781" ref_strand="+" ref_description="SGN-E298781 [cLET-44-K23]">
      <seq>cgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttggtgataattatatcccacgtaagtcgttgggactcttcaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="33494" stop="34458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33794" g_stop="34151" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-E298781" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33794" e_stop="34151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGC------TTTTAGTATTGGATTCAATGATCA-TTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAA</genome_strand>
        <mrna_strand>CGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGGTGATAATTATATCCCACGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>68</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7945" PGL_stop="8690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7945" e_stop="8433"/>
            <exon e_start="8484" e_stop="8690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.914"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="7945" e_stop="8433" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8434" i_stop="8483" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.870">
            <gDNA_exon_boundary e_start="8484" e_stop="8690" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7945" stop="8433"/>
              <exon start="8484" stop="8690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATTCGAAGGTTAAAAAAAAAATGGAGCAAAAATCAAATTTTTTTAGTGATTTACCAGAAGATATAGAGATGGAGATTTTGTCAAGATTGCCTGTGAAATGTCTCTTACAACTCAAGTGTGTCAACAAAAAATGGTATGTTTTAATTGAAAATCCAATTTTTATTCAAAAACACCTTCACAACACAAAAAATCCTACATGTTATTTTGTTCATCATTATTTTCTTGATACAATGAAATCTGGTTTTACTTTATTTAATCATAATGAACAAAACCAATTAATTCCAAAATCCCATTTGTACCAAGATGTTTTAAACACATCTACACATTTGTGGCAAGTTCTTAGTCCATTAAATGGTCTATTTTTGCTTTATAATGATCAAGAAGATGTAGCACTATGGAACCCTTCTACTAAAGAATTTAAGCCTCTACCAATTTCACAACCCCTAAATTGTCCTTTATCTTCCTATAAATTCGATTTCGGGATCG : CCCTCGAGTGGTGATTATAAAGTCGTTTGGATGAGAGATTACTGGAATGTAGACTCTGAAGACTGGCATTCTCCTACGATTATTTCAGTCTATACGTTGAGTACGAATTCCTGGAGAACTTTTGAGGAATTCAGGGTTTCTAGTCGCAACGTCGCCAAATCAAATGGTAACACATATTTGAATGGATTTTACTATTGGAGGGCATGT</gDNA_template>
            <first_frame> R  I  R  R  L  K  K  K  W  S  K  N  Q  I  F  L  V  I  Y  Q  K  I  *  R  W  R  F  C  Q  D  C  L  *  N  V  S  Y  N  S  S  V  S  T  K  N  G  M  F  *  L  K  I  Q  F  L  F  K  N  T  F  T  T  Q  K  I  L  H  V  I  L  F  I  I  I  F  L  I  Q  *  N  L  V  L  L  Y  L  I  I  M  N  K  T  N  *  F  Q  N  P  I  C  T  K  M  F  *  T  H  L  H  I  C  G  K  F  L  V  H  *  M  V  Y  F  C  F  I  M  I  K  K  M  *  H  Y  G  T  L  L  L  K  N  L  S  L  Y  Q  F  H  N  P  *  I  V  L  Y  L  P  I  N  S  I  S  G  S  :  P  S  S  G  D  Y  K  V  V  W  M  R  D  Y  W  N  V  D  S  E  D  W  H  S  P  T  I  I  S  V  Y  T  L  S  T  N  S  W  R  T  F  E  E  F  R  V  S  S  R  N  V  A  K  S  N  G  N  T  Y  L  N  G  F  Y  Y  W  R  A  C </first_frame>
            <second_frame>  G  F  E  G  *  K  K  N  G  A  K  I  K  F  F  *  *  F  T  R  R  Y  R  D  G  D  F  V  K  I  A  C  E  M  S  L  T  T  Q  V  C  Q  Q  K  M  V  C  F  N  *  K  S  N  F  Y  S  K  T  P  S  Q  H  K  K  S  Y  M  L  F  C  S  S  L  F  S  *  Y  N  E  I  W  F  Y  F  I  *  S  *  *  T  K  P  I  N  S  K  I  P  F  V  P  R  C  F  K  H  I  Y  T  F  V  A  S  S  *  S  I  K  W  S  I  F  A  L  *  *  S  R  R  C  S  T  M  E  P  F  Y  *  R  I  *  A  S  T  N  F  T  T  P  K  L  S  F  I  F  L  *  I  R  F  R  D  R :   P  R  V  V  I  I  K  S  F  G  *  E  I  T  G  M  *  T  L  K  T  G  I  L  L  R  L  F  Q  S  I  R  *  V  R  I  P  G  E  L  L  R  N  S  G  F  L  V  A  T  S  P  N  Q  M  V  T  H  I  *  M  D  F  T  I  G  G  H   </second_frame>
            <third_frame>   D  S  K  V  K  K  K  M  E  Q  K  S  N  F  F  S  D  L  P  E  D  I  E  M  E  I  L  S  R  L  P  V  K  C  L  L  Q  L  K  C  V  N  K  K  W  Y  V  L  I  E  N  P  I  F  I  Q  K  H  L  H  N  T  K  N  P  T  C  Y  F  V  H  H  Y  F  L  D  T  M  K  S  G  F  T  L  F  N  H  N  E  Q  N  Q  L  I  P  K  S  H  L  Y  Q  D  V  L  N  T  S  T  H  L  W  Q  V  L  S  P  L  N  G  L  F  L  L  Y  N  D  Q  E  D  V  A  L  W  N  P  S  T  K  E  F  K  P  L  P  I  S  Q  P  L  N  C  P  L  S  S  Y  K  F  D  F  G  I   : A  L  E  W  *  L  *  S  R  L  D  E  R  L  L  E  C  R  L  *  R  L  A  F  S  Y  D  Y  F  S  L  Y  V  E  Y  E  F  L  E  N  F  *  G  I  Q  G  F  *  S  Q  R  R  Q  I  K  W  *  H  I  F  E  W  I  L  L  L  E  G  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7947" stop="8433"/>
                    <exon start="8484" stop="8497"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKVKKKMEQKSNFFSDLPEDIEMEILSRLPVKCLLQLKCVNKKWYVLIENPIFIQKHLHNTKNPTCYFVHHYFLDTMKSGFTLFNHNEQNQLIPKSHLYQDVLNTSTHLWQVLSPLNGLFLLYNDQEDVALWNPSTKEFKPLPISQPLNCPLSSYKFDFGIALEW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8799" PGL_stop="9158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8799" e_stop="9158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="8799" e_stop="9158" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8799" stop="9158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8799" stop="9158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</gDNA_template>
            <first_frame> F  I  A  M  Y  I  Y  E  P  I  I  L  G  R  E  T  S  I  D  I  W  I  M  E  K  N  G  Y  W  T  K  N  M  R  I  G  P  F  L  N  I  K  R  S  I  G  Y  G  K  N  G  E  I  F  L  E  V  V  T  Y  Q  L  D  I  F  D  P  F  L  K  N  N  K  V  L  S  Q  Q  K  N  G  Y  S  L  Q  A  F  A  Y  N  E  S  L  V  S  L  K  N  I  S  F  L  *  F  S  W  L  M  I  *  M  K  M  M  A  I  I  *  I  L </first_frame>
            <second_frame>  S  L  L  C  T  F  M  S  Q  *  F  L  V  E  K  Q  V  L  T  Y  G  L  W  R  K  M  A  I  G  L  K  I  *  E  L  A  L  F  *  I  S  K  D  Q  L  D  M  E  K  M  G  K  F  F  L  K  L  L  H  I  N  W  T  Y  L  I  L  F  *  R  T  I  R  F  L  A  N  K  K  M  A  T  L  C  K  L  L  L  T  M  K  A  *  F  H  *  K  I  F  H  S  C  N  L  V  G  *  *  Y  K  *  K  *  W  L  *  F  K  F   </second_frame>
            <third_frame>   H  C  Y  V  H  L  *  A  N  N  S  W  *  R  N  K  Y  *  H  M  D  Y  G  E  K  W  L  L  D  *  K  Y  E  N  W  P  F  F  K  Y  Q  K  I  N  W  I  W  K  K  W  G  N  F  S  *  S  C  Y  I  S  I  G  H  I  *  S  F  F  K  E  Q  *  G  S  *  P  T  K  K  W  L  L  F  A  S  F  C  L  Q  *  K  L  S  F  I  E  K  Y  F  I  L  V  I  *  L  V  N  D  I  N  E  N  D  G  Y  N  L  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8799" stop="9107"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIAMYIYEPIILGRETSIDIWIMEKNGYWTKNMRIGPFLNIKRSIGYGKNGEIFLEVVTYQLDIFDPFLKNNKVLSQQKNGYSLQAFAYNESLVSLKNISFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27561" PGL_stop="14542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27561" e_stop="27360"/>
            <exon e_start="25499" e_stop="25237"/>
            <exon e_start="24599" e_stop="24388"/>
            <exon e_start="24062" e_stop="23795"/>
            <exon e_start="23451" e_stop="22915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.989"/>
          <exon-intron don_prob="0.979" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="27561" e_stop="27360" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25499" e_stop="25237" e_length="263"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25236" i_stop="24600" i_length="637"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24599" e_stop="24388" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.791">
            <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24062" e_stop="23795" e_length="268"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="23451" e_stop="22915" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27561" stop="27360"/>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27561" stop="27360"/>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27547" stop="27360"/>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25337" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24514" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24421" stop="24388"/>
              <exon start="24062" stop="23902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24407" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24021" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24006" stop="23795"/>
              <exon start="23451" stop="23032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23990" stop="23795"/>
              <exon start="23451" stop="23103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23932" stop="23795"/>
              <exon start="23451" stop="23053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23861" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23852" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23445" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23424" stop="22915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23412" stop="23024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23298" stop="22915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAGCTGAGACACAGATCTACTCAGTGTTCCTTTTTGTAAAATTTTAGAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTACAGCTGAAAAAAAAATGGCAGGTGGGTCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTG : GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCT : GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG : ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG : GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATATCAATAACATTGTGTAATATTGGATTCT</gDNA_template>
            <first_frame> M  S  *  D  T  D  L  L  S  V  P  F  C  K  I  L  E  C  K  L  Q  N  L  *  F  Q  N  Q  E  F  A  T  A  E  K  K  M  A  G  G  S  T  R  K  I  S  A  A  S  A  R  A  H  T  R  K  A  K  Q  K  T  S  F  P  L  P  F   : G  M  M  R  N  M  I  A  L  F  G  I  V  I  L  A  L  I  Y  R  A  I  M  P  P  P  P  K  I  C  G  S  S  N  G  P  L  I  T  A  P  R  V  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  Q  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  T  S  P  :  E  L  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  K  R  T  P  K  T  L  A  L  D  I  E  E  L  A  D  Q  L  E  L  G  S  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H  R :   L  A  G  A  I  L  L  T  P  V  T  N  Y  W  W  G  S  F  P  A  N  L  T  K  Q  A  Y  Y  E  Q  L  V  Q  D  Q  W  T  L  R  I  A  H  Y  F  P  W  L  T  Y  W  W  N  T  Q  K  L  F  P  S  S  S  V  A  T  G  S  E  D  I  L  L  E  Q  D  R  V  L  M  P  I  F  D  S  Y  Q  S  K  Y  R  :  D  L  V  R  Q  Q  G  E  Y  E  S  I  H  R  D  L  M  I  G  F  G  T  W  E  F  D  P  M  E  L  E  N  P  F  H  N  G  E  G  S  V  H  I  W  Q  G  D  E  D  G  H  V  P  V  I  L  Q  R  F  I  A  K  K  L  P  W  I  H  Y  H  E  M  K  G  G  G  H  M  F  P  W  A  E  G  M  G  D  K  V  M  K  T  F  L  L  G  E  P  F  V  M  *  K  L  K  R  G  Y  W  F  *  Y  W  I  Q  R  S  F  F  V  I  E  Q  I  *  I  F  C  *  *  L  Y  P  T  *  V  V  G  T  L  Q  K  Y  C  Y  I  L  A  C  K  S  D  L  P  N  T  L  H  F  *  R  V  R  L  T  L  F  F  *  Y  Q  *  H  C  V  I  L  D  S </first_frame>
            <second_frame>  *  A  E  T  Q  I  Y  S  V  F  L  F  V  K  F  *  S  V  N  Y  R  I  C  N  F  K  I  K  N  L  L  Q  L  K  K  K  W  Q  V  G  Q  Q  G  K  F  Q  Q  L  Q  L  G  L  I  L  V  K  L  S  K  R  L  L  S  L  F  L  L  :  E  *  *  E  I  *  *  P  F  L  E  *  *  Y  W  H  *  F  I  G  Q  L  C  L  H  H  R  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  *  S  F  L  M  G  D  I  W  H  I  K  K  M  V  F  L  E  T  K  Q  N  T  N  L  F  S  S  M  A  L  I  V  S  D  M  M  L  L  C  S  Q  L  L  L  L :   S  L  C  K  V  W  E  Y  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  Q  K  E  R  Q  R  L  *  L  L  I  *  R  N  *  L  I  N  W  N  *  D  L  S  F  M  L  S  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T   : D  W  L  E  Q  F  F  *  H  P  *  L  T  T  G  G  V  V  F  L  Q  T  *  L  N  K  R  T  T  N  S  L  C  R  I  N  G  R  F  A  S  H  T  I  F  H  G  *  L  T  G  G  T  L  K  N  Y  F  L  L  P  A  L  Q  R  A  A  R  I  F  F  *  N  K  T  E  F  L  C  L  S  L  I  H  I  R  V  N  I  G :   T  W  *  D  S  K  G  S  T  S  P  S  I  A  T  *  *  *  V  S  G  H  G  N  L  I  R  W  N  *  K  T  H  S  I  T  G  K  G  P  F  T  S  G  K  A  M  K  T  G  M  Y  Q  S  F  Y  N  D  S  S  R  R  N  Y  H  G  F  T  I  M  K  *  K  V  E  V  I  C  F  H  G  L  K  E  W  E  I  K  L  *  R  H  F  Y  L  E  S  L  L  L  C  K  S  *  K  G  A  I  G  F  S  I  G  F  N  D  H  F  L  S  L  N  K  F  E  Y  F  V  D  N  Y  I  P  R  K  S  L  G  L  F  K  N  I  V  I  Y  L  H  V  S  R  I  F  Q  I  L  Y  I  F  E  E  F  D  *  H  C  F  F  D  I  N  N  I  V  *  Y  W  I   </second_frame>
            <third_frame>   E  L  R  H  R  S  T  Q  C  S  F  L  *  N  F  R  V  *  I  T  E  F  V  I  S  K  S  R  I  C  Y  S  *  K  K  N  G  R  W  V  N  K  E  N  F  S  S  F  S  *  G  S  Y  S  *  S  *  A  K  D  F  F  P  S  S  F  W :   N  D  E  K  Y  D  S  P  F  W  N  S  D  I  G  T  D  L  *  G  N  Y  A  S  T  T  E  D  L  W  F  I  K  W  T  S  N  Y  S  T  K  S  E  A  F  *  W  E  I  F  G  I  *  R  K  W  C  S  *  R  P  S  K  T  Q  I  C  F  H  P  W  L  *  L  C  Q  T  *  C  C  F  A  H  N  Y  F  S   : *  A  Y  A  K  F  G  N  I  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  K  K  N  A  K  D  F  S  S  *  Y  R  G  I  S  *  S  I  G  I  R  I  *  V  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q  :  I  G  W  S  N  S  S  N  T  R  N  *  L  L  V  G  *  F  S  C  K  L  D  *  T  S  V  L  R  T  A  C  A  G  S  M  D  A  S  H  R  T  L  F  S  M  A  D  L  L  V  E  H  S  K  I  I  S  F  F  Q  R  C  N  G  Q  R  G  Y  S  F  R  T  R  Q  S  S  Y  A  Y  L  *  F  I  S  E  *  I  S   : G  L  G  K  T  A  R  G  V  R  V  H  P  S  R  P  N  D  R  F  R  D  M  G  I  *  S  D  G  T  R  K  P  I  P  *  R  G  R  V  R  S  H  L  A  R  R  *  R  R  A  C  T  S  H  S  T  T  I  H  R  E  E  T  T  M  D  S  L  S  *  N  E  R  W  R  S  Y  V  S  M  G  *  R  N  G  R  *  S  Y  E  D  I  F  T  W  R  A  F  C  Y  V  K  A  K  K  G  L  L  V  L  V  L  D  S  T  I  I  F  C  H  *  T  N  L  N  I  L  L  I  I  I  S  H  V  S  R  W  D  S  S  K  I  L  L  Y  T  C  M  *  V  G  S  S  K  Y  F  T  F  L  K  S  S  I  N  I  V  F  L  I  S  I  T  L  C  N  I  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27489" stop="27360"/>
                    <exon start="25499" stop="25237"/>
                    <exon start="24599" stop="24388"/>
                    <exon start="24062" stop="23795"/>
                    <exon start="23451" stop="23146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQNQEFATAEKKMAGGSTRKISAASARAHTRKAKQKTSFPLPFGMMRNMIALFGIVILALIYRAIMPPPPKICGSSNGPLITAPRVKLSDGRYLAYKENGVPRDQAKHKFVFIHGFDCVRHDVALLTTTSPELMQSLGIYIVSIDRPGYGESDPHPKRTPKTLALDIEELADQLELGSKFYVIGFSMGGQAVWGLLKYIPHRLAGAILLTPVTNYWWGSFPANLTKQAYYEQLVQDQWTLRIAHYFPWLTYWWNTQKLFPSSSVATGSEDILLEQDRVLMPIFDSYQSKYRDLVRQQGEYESIHRDLMIGFGTWEFDPMELENPFHNGEGSVHIWQGDEDGHVPVILQRFIAKKLPWIHYHEMKGGGHMFPWAEGMGDKVMKTFLLGEPFVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27561" e_stop="27360"/>
            <exon e_start="25499" e_stop="25237"/>
            <exon e_start="24599" e_stop="24388"/>
            <exon e_start="24062" e_stop="23795"/>
            <exon e_start="23451" e_stop="22958"/>
            <exon e_start="22363" e_stop="22347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.989"/>
          <exon-intron don_prob="0.979" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.436" e_score="0.996"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="27561" e_stop="27360" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25499" e_stop="25237" e_length="263"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25236" i_stop="24600" i_length="637"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24599" e_stop="24388" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.791">
            <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24062" e_stop="23795" e_length="268"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="23451" e_stop="22958" e_length="494"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.436">
            <gDNA_intron_boundary i_start="22957" i_stop="22364" i_length="594"/>
          </intron>
          <exon e_serial="6" e_score="0.941">
            <gDNA_exon_boundary e_start="22363" e_stop="22347" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27561" stop="27360"/>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27561" stop="27360"/>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27547" stop="27360"/>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25499" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25337" stop="25237"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24514" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24421" stop="24388"/>
              <exon start="24062" stop="23902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24407" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24021" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24006" stop="23795"/>
              <exon start="23451" stop="23032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23992" stop="23795"/>
              <exon start="23451" stop="22958"/>
              <exon start="22363" stop="22347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23990" stop="23795"/>
              <exon start="23451" stop="23103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23932" stop="23795"/>
              <exon start="23451" stop="23053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23861" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23852" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23445" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23412" stop="23024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAGCTGAGACACAGATCTACTCAGTGTTCCTTTTTGTAAAATTTTAGAGTGTAAATTACAGAATTTGTAATTTCAAAATCAAGAATTTGCTACAGCTGAAAAAAAAATGGCAGGTGGGTCAACAAGGAAAATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTG : GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCT : GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG : ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG : GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAAC : CAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> M  S  *  D  T  D  L  L  S  V  P  F  C  K  I  L  E  C  K  L  Q  N  L  *  F  Q  N  Q  E  F  A  T  A  E  K  K  M  A  G  G  S  T  R  K  I  S  A  A  S  A  R  A  H  T  R  K  A  K  Q  K  T  S  F  P  L  P  F   : G  M  M  R  N  M  I  A  L  F  G  I  V  I  L  A  L  I  Y  R  A  I  M  P  P  P  P  K  I  C  G  S  S  N  G  P  L  I  T  A  P  R  V  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  Q  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  T  S  P  :  E  L  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  K  R  T  P  K  T  L  A  L  D  I  E  E  L  A  D  Q  L  E  L  G  S  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H  R :   L  A  G  A  I  L  L  T  P  V  T  N  Y  W  W  G  S  F  P  A  N  L  T  K  Q  A  Y  Y  E  Q  L  V  Q  D  Q  W  T  L  R  I  A  H  Y  F  P  W  L  T  Y  W  W  N  T  Q  K  L  F  P  S  S  S  V  A  T  G  S  E  D  I  L  L  E  Q  D  R  V  L  M  P  I  F  D  S  Y  Q  S  K  Y  R  :  D  L  V  R  Q  Q  G  E  Y  E  S  I  H  R  D  L  M  I  G  F  G  T  W  E  F  D  P  M  E  L  E  N  P  F  H  N  G  E  G  S  V  H  I  W  Q  G  D  E  D  G  H  V  P  V  I  L  Q  R  F  I  A  K  K  L  P  W  I  H  Y  H  E  M  K  G  G  G  H  M  F  P  W  A  E  G  M  G  D  K  V  M  K  T  F  L  L  G  E  P  F  V  M  *  K  L  K  R  G  Y  W  F  *  Y  W  I  Q  R  S  F  F  V  I  E  Q  I  *  I  F  C  *  *  L  Y  P  T  *  V  V  G  T  L  Q  K  Y  C  Y  I  L  A  C  K  S  D  L  P  N  T  L  H  F  *  R  V  R  L  T :   K  K  K  K  K  </first_frame>
            <second_frame>  *  A  E  T  Q  I  Y  S  V  F  L  F  V  K  F  *  S  V  N  Y  R  I  C  N  F  K  I  K  N  L  L  Q  L  K  K  K  W  Q  V  G  Q  Q  G  K  F  Q  Q  L  Q  L  G  L  I  L  V  K  L  S  K  R  L  L  S  L  F  L  L  :  E  *  *  E  I  *  *  P  F  L  E  *  *  Y  W  H  *  F  I  G  Q  L  C  L  H  H  R  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  *  S  F  L  M  G  D  I  W  H  I  K  K  M  V  F  L  E  T  K  Q  N  T  N  L  F  S  S  M  A  L  I  V  S  D  M  M  L  L  C  S  Q  L  L  L  L :   S  L  C  K  V  W  E  Y  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  Q  K  E  R  Q  R  L  *  L  L  I  *  R  N  *  L  I  N  W  N  *  D  L  S  F  M  L  S  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T   : D  W  L  E  Q  F  F  *  H  P  *  L  T  T  G  G  V  V  F  L  Q  T  *  L  N  K  R  T  T  N  S  L  C  R  I  N  G  R  F  A  S  H  T  I  F  H  G  *  L  T  G  G  T  L  K  N  Y  F  L  L  P  A  L  Q  R  A  A  R  I  F  F  *  N  K  T  E  F  L  C  L  S  L  I  H  I  R  V  N  I  G :   T  W  *  D  S  K  G  S  T  S  P  S  I  A  T  *  *  *  V  S  G  H  G  N  L  I  R  W  N  *  K  T  H  S  I  T  G  K  G  P  F  T  S  G  K  A  M  K  T  G  M  Y  Q  S  F  Y  N  D  S  S  R  R  N  Y  H  G  F  T  I  M  K  *  K  V  E  V  I  C  F  H  G  L  K  E  W  E  I  K  L  *  R  H  F  Y  L  E  S  L  L  L  C  K  S  *  K  G  A  I  G  F  S  I  G  F  N  D  H  F  L  S  L  N  K  F  E  Y  F  V  D  N  Y  I  P  R  K  S  L  G  L  F  K  N  I  V  I  Y  L  H  V  S  R  I  F  Q  I  L  Y  I  F  E  E  F  D  *   : P  K  K  K  K  K </second_frame>
            <third_frame>   E  L  R  H  R  S  T  Q  C  S  F  L  *  N  F  R  V  *  I  T  E  F  V  I  S  K  S  R  I  C  Y  S  *  K  K  N  G  R  W  V  N  K  E  N  F  S  S  F  S  *  G  S  Y  S  *  S  *  A  K  D  F  F  P  S  S  F  W :   N  D  E  K  Y  D  S  P  F  W  N  S  D  I  G  T  D  L  *  G  N  Y  A  S  T  T  E  D  L  W  F  I  K  W  T  S  N  Y  S  T  K  S  E  A  F  *  W  E  I  F  G  I  *  R  K  W  C  S  *  R  P  S  K  T  Q  I  C  F  H  P  W  L  *  L  C  Q  T  *  C  C  F  A  H  N  Y  F  S   : *  A  Y  A  K  F  G  N  I  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  K  K  N  A  K  D  F  S  S  *  Y  R  G  I  S  *  S  I  G  I  R  I  *  V  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q  :  I  G  W  S  N  S  S  N  T  R  N  *  L  L  V  G  *  F  S  C  K  L  D  *  T  S  V  L  R  T  A  C  A  G  S  M  D  A  S  H  R  T  L  F  S  M  A  D  L  L  V  E  H  S  K  I  I  S  F  F  Q  R  C  N  G  Q  R  G  Y  S  F  R  T  R  Q  S  S  Y  A  Y  L  *  F  I  S  E  *  I  S   : G  L  G  K  T  A  R  G  V  R  V  H  P  S  R  P  N  D  R  F  R  D  M  G  I  *  S  D  G  T  R  K  P  I  P  *  R  G  R  V  R  S  H  L  A  R  R  *  R  R  A  C  T  S  H  S  T  T  I  H  R  E  E  T  T  M  D  S  L  S  *  N  E  R  W  R  S  Y  V  S  M  G  *  R  N  G  R  *  S  Y  E  D  I  F  T  W  R  A  F  C  Y  V  K  A  K  K  G  L  L  V  L  V  L  D  S  T  I  I  F  C  H  *  T  N  L  N  I  L  L  I  I  I  S  H  V  S  R  W  D  S  S  K  I  L  L  Y  T  C  M  *  V  G  S  S  K  Y  F  T  F  L  K  S  S  I  N  :  Q  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27489" stop="27360"/>
                    <exon start="25499" stop="25237"/>
                    <exon start="24599" stop="24388"/>
                    <exon start="24062" stop="23795"/>
                    <exon start="23451" stop="23146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQNQEFATAEKKMAGGSTRKISAASARAHTRKAKQKTSFPLPFGMMRNMIALFGIVILALIYRAIMPPPPKICGSSNGPLITAPRVKLSDGRYLAYKENGVPRDQAKHKFVFIHGFDCVRHDVALLTTTSPELMQSLGIYIVSIDRPGYGESDPHPKRTPKTLALDIEELADQLELGSKFYVIGFSMGGQAVWGLLKYIPHRLAGAILLTPVTNYWWGSFPANLTKQAYYEQLVQDQWTLRIAHYFPWLTYWWNTQKLFPSSSVATGSEDILLEQDRVLMPIFDSYQSKYRDLVRQQGEYESIHRDLMIGFGTWEFDPMELENPFHNGEGSVHIWQGDEDGHVPVILQRFIAKKLPWIHYHEMKGGGHMFPWAEGMGDKVMKTFLLGEPFVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="27407" e_stop="27360"/>
            <exon e_start="25499" e_stop="25233"/>
            <exon e_start="24599" e_stop="24388"/>
            <exon e_start="24062" e_stop="23795"/>
            <exon e_start="23451" e_stop="22915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="0.837" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="27407" e_stop="27360" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25499" e_stop="25233" e_length="267"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25232" i_stop="24600" i_length="633"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24599" e_stop="24388" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.791">
            <gDNA_intron_boundary i_start="24387" i_stop="24063" i_length="325"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24062" e_stop="23795" e_length="268"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="23451" e_stop="22915" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27407" stop="27360"/>
              <exon start="25499" stop="25233"/>
              <exon start="24599" stop="24388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25367" stop="25233"/>
              <exon start="24599" stop="24388"/>
              <exon start="24062" stop="23894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24514" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24510" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24421" stop="24388"/>
              <exon start="24062" stop="23902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24407" stop="24388"/>
              <exon start="24062" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24021" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24006" stop="23795"/>
              <exon start="23451" stop="23032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23990" stop="23795"/>
              <exon start="23451" stop="23103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23932" stop="23795"/>
              <exon start="23451" stop="23053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23861" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23852" stop="23795"/>
              <exon start="23451" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23445" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23424" stop="22915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23413" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23412" stop="23024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23298" stop="22915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTG : GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT : GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG : ATTGGCTGGAGCAATTCTTCTAACACCCGTAACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG : GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATATCAATAACATTGTGTAATATTGGATTCT</gDNA_template>
            <first_frame> L  I  L  V  K  L  S  K  R  L  L  S  L  F  L  L  :  E  *  *  E  I  *  *  P  F  L  E  *  *  Y  W  H  *  F  I  G  Q  L  C  L  H  H  R  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  *  S  F  L  M  G  D  I  W  H  I  K  K  M  V  F  L  E  T  K  Q  N  T  N  L  F  S  S  M  A  L  I  V  S  D  M  M  L  L  C  S  Q  L  L  L  L  Y  :  E  L  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  K  R  T  P  K  T  L  A  L  D  I  E  E  L  A  D  Q  L  E  L  G  S  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H  R :   L  A  G  A  I  L  L  T  P  V  T  N  Y  W  W  G  S  F  P  A  N  L  T  K  Q  A  Y  Y  E  Q  L  V  Q  D  Q  W  T  L  R  I  A  H  Y  F  P  W  L  T  Y  W  W  N  T  Q  K  L  F  P  S  S  S  V  A  T  G  S  E  D  I  L  L  E  Q  D  R  V  L  M  P  I  F  D  S  Y  Q  S  K  Y  R  :  D  L  V  R  Q  Q  G  E  Y  E  S  I  H  R  D  L  M  I  G  F  G  T  W  E  F  D  P  M  E  L  E  N  P  F  H  N  G  E  G  S  V  H  I  W  Q  G  D  E  D  G  H  V  P  V  I  L  Q  R  F  I  A  K  K  L  P  W  I  H  Y  H  E  M  K  G  G  G  H  M  F  P  W  A  E  G  M  G  D  K  V  M  K  T  F  L  L  G  E  P  F  V  M  *  K  L  K  R  G  Y  W  F  *  Y  W  I  Q  R  S  F  F  V  I  E  Q  I  *  I  F  C  *  *  L  Y  P  T  *  V  V  G  T  L  Q  K  Y  C  Y  I  L  A  C  K  S  D  L  P  N  T  L  H  F  *  R  V  R  L  T  L  F  F  *  Y  Q  *  H  C  V  I  L  D  S </first_frame>
            <second_frame>  S  Y  S  *  S  *  A  K  D  F  F  P  S  S  F  W :   N  D  E  K  Y  D  S  P  F  W  N  S  D  I  G  T  D  L  *  G  N  Y  A  S  T  T  E  D  L  W  F  I  K  W  T  S  N  Y  S  T  K  S  E  A  F  *  W  E  I  F  G  I  *  R  K  W  C  S  *  R  P  S  K  T  Q  I  C  F  H  P  W  L  *  L  C  Q  T  *  C  C  F  A  H  N  Y  F  S  C  M :   S  L  C  K  V  W  E  Y  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  Q  K  E  R  Q  R  L  *  L  L  I  *  R  N  *  L  I  N  W  N  *  D  L  S  F  M  L  S  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T   : D  W  L  E  Q  F  F  *  H  P  *  L  T  T  G  G  V  V  F  L  Q  T  *  L  N  K  R  T  T  N  S  L  C  R  I  N  G  R  F  A  S  H  T  I  F  H  G  *  L  T  G  G  T  L  K  N  Y  F  L  L  P  A  L  Q  R  A  A  R  I  F  F  *  N  K  T  E  F  L  C  L  S  L  I  H  I  R  V  N  I  G :   T  W  *  D  S  K  G  S  T  S  P  S  I  A  T  *  *  *  V  S  G  H  G  N  L  I  R  W  N  *  K  T  H  S  I  T  G  K  G  P  F  T  S  G  K  A  M  K  T  G  M  Y  Q  S  F  Y  N  D  S  S  R  R  N  Y  H  G  F  T  I  M  K  *  K  V  E  V  I  C  F  H  G  L  K  E  W  E  I  K  L  *  R  H  F  Y  L  E  S  L  L  L  C  K  S  *  K  G  A  I  G  F  S  I  G  F  N  D  H  F  L  S  L  N  K  F  E  Y  F  V  D  N  Y  I  P  R  K  S  L  G  L  F  K  N  I  V  I  Y  L  H  V  S  R  I  F  Q  I  L  Y  I  F  E  E  F  D  *  H  C  F  F  D  I  N  N  I  V  *  Y  W  I   </second_frame>
            <third_frame>   H  T  R  K  A  K  Q  K  T  S  F  P  L  P  F   : G  M  M  R  N  M  I  A  L  F  G  I  V  I  L  A  L  I  Y  R  A  I  M  P  P  P  P  K  I  C  G  S  S  N  G  P  L  I  T  A  P  R  V  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  Q  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  T  S  P  V   : *  A  Y  A  K  F  G  N  I  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  K  K  N  A  K  D  F  S  S  *  Y  R  G  I  S  *  S  I  G  I  R  I  *  V  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q  :  I  G  W  S  N  S  S  N  T  R  N  *  L  L  V  G  *  F  S  C  K  L  D  *  T  S  V  L  R  T  A  C  A  G  S  M  D  A  S  H  R  T  L  F  S  M  A  D  L  L  V  E  H  S  K  I  I  S  F  F  Q  R  C  N  G  Q  R  G  Y  S  F  R  T  R  Q  S  S  Y  A  Y  L  *  F  I  S  E  *  I  S   : G  L  G  K  T  A  R  G  V  R  V  H  P  S  R  P  N  D  R  F  R  D  M  G  I  *  S  D  G  T  R  K  P  I  P  *  R  G  R  V  R  S  H  L  A  R  R  *  R  R  A  C  T  S  H  S  T  T  I  H  R  E  E  T  T  M  D  S  L  S  *  N  E  R  W  R  S  Y  V  S  M  G  *  R  N  G  R  *  S  Y  E  D  I  F  T  W  R  A  F  C  Y  V  K  A  K  K  G  L  L  V  L  V  L  D  S  T  I  I  F  C  H  *  T  N  L  N  I  L  L  I  I  I  S  H  V  S  R  W  D  S  S  K  I  L  L  Y  T  C  M  *  V  G  S  S  K  Y  F  T  F  L  K  S  S  I  N  I  V  F  L  I  S  I  T  L  C  N  I  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25370" stop="25233"/>
                    <exon start="24599" stop="24388"/>
                    <exon start="24062" stop="23795"/>
                    <exon start="23451" stop="23146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLMGDIWHIKKMVFLETKQNTNLFSSMALIVSDMMLLCSQLLLLYELMQSLGIYIVSIDRPGYGESDPHPKRTPKTLALDIEELADQLELGSKFYVIGFSMGGQAVWGLLKYIPHRLAGAILLTPVTNYWWGSFPANLTKQAYYEQLVQDQWTLRIAHYFPWLTYWWNTQKLFPSSSVATGSEDILLEQDRVLMPIFDSYQSKYRDLVRQQGEYESIHRDLMIGFGTWEFDPMELENPFHNGEGSVHIWQGDEDGHVPVILQRFIAKKLPWIHYHEMKGGGHMFPWAEGMGDKVMKTFLLGEPFVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="22495" e_stop="22263"/>
            <exon e_start="20781" e_stop="20522"/>
            <exon e_start="20440" e_stop="20229"/>
            <exon e_start="19536" e_stop="19272"/>
            <exon e_start="17420" e_stop="16968"/>
            <exon e_start="16547" e_stop="16521"/>
            <exon e_start="14565" e_stop="14542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.942"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.630"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22495" e_stop="22263" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="22262" i_stop="20782" i_length="1481"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20781" e_stop="20522" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20440" e_stop="20229" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19536" e_stop="19272" e_length="265"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19271" i_stop="17421" i_length="1851"/>
          </intron>
          <exon e_serial="5" e_score="0.942">
            <gDNA_exon_boundary e_start="17420" e_stop="16968" e_length="453"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="16967" i_stop="16548" i_length="420"/>
          </intron>
          <exon e_serial="6" e_score="0.630">
            <gDNA_exon_boundary e_start="16547" e_stop="16521" e_length="27"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16520" i_stop="14566" i_length="1955"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="14565" e_stop="14542" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22495" stop="22263"/>
              <exon start="20781" stop="20522"/>
              <exon start="20440" stop="20257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20773" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20773" stop="20522"/>
              <exon start="20440" stop="20250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20771" stop="20522"/>
              <exon start="20440" stop="20268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20756" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20747" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20684" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20680" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19272"/>
              <exon start="17420" stop="17347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20680" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20673" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20670" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19272"/>
              <exon start="17420" stop="17362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19303" stop="19272"/>
              <exon start="17420" stop="16970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435363" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17237" stop="16968"/>
              <exon start="16547" stop="16521"/>
              <exon start="14565" stop="14542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAATGGCAACCAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAAAGTTCTATTCCTTTTCCTTCTG : GGGCATTTGCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA : GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAG : GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGT : GCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGT : ACTCAAATTCGAAATCACATGGAAAAG : TAATTTCTATAAAAGAAAAAAAAA</gDNA_template>
            <first_frame> K  R  F  R  T  I  I  K  S  V  R  *  D  S  D  L  F  N  L  H  F  C  I  I  F  V  N  L  Q  C  E  Y  K  I  C  N  F  K  I  K  N  L  I  Q  Q  K  K  K  K  N  G  N  Q  E  D  F  S  S  F  S  *  G  S  Y  S  *  S  *  A  K  K  F  Y  S  F  S  F  W :   G  I  C  E  N  S  S  G  C  F  D  W  V  I  S  V  G  L  S  S  N  T  T  T  S  P  *  D  L  W  I  P  R  W  P  S  R  H  C  T  *  N  Q  T  *  *  W  K  T  L  G  L  Q  G  D  W  C  T  *  R  *  C  K  I  *  D  C  I  Y  P  W  V  R  W  L  *  A  *  C  S  N  *  H  P  L  S   : R  C  H  R  K  F  R  S  V  H  C  F  L  *  Q  T  W  L  W  R  K  *  S  *  S  K  T  N  S  Q  E  L  S  F  *  H  T  G  A  C  *  S  I  R  S  R  I  E  I  L  C  Y  G  I  F  N  G  G  T  G  C  L  D  L  S  Q  I  H  S  S  Q  :  V  G  R  C  C  S  Y  C  T  S  C  Q  L  L  V  A  *  V  S  C  *  Y  V  P  R  S  I  Q  P  S  T  S  S  R  Q  M  D  S  S  C  C  S  L  P  S  V  A  H  L  L  V  E  H  S  E  V  L  S  F  M  Q  C  C  R  S  Q  P  C  N  F  L  F  E  G  P  R  A  S  F  Q  A  K  F  E  P  R  L  S   : C  T  G  K  T  T  R  R  I  *  I  P  P  P  R  L  N  D  W  I  R  N  M  G  I  R  S  N  G  S  *  E  P  V  P  *  Q  *  R  F  R  S  L  M  A  R  R  *  G  *  A  L  A  R  H  T  T  K  V  H  F  T  A  I  T  M  D  P  I  S  *  N  S  R  C  W  S  F  D  S  N  D  *  W  N  W  R  E  N  L  Q  D  S  F  N  C  V  N  S  P  F  L  *  L  R  A  R  F  H  L  A  R  R  D  V  F  *  V  V  Y  I  S  L  V  F  V  D  R  *  V  S  Y  F  D  V  K  E  F  *  L  *  E  K  Y  F  V  L  Q  I  L  L   : Y  S  N  S  K  S  H  G  K   : V  I  S  I  K  E  K  K  </first_frame>
            <second_frame>  K  D  F  E  Q  L  L  N  Q  *  D  E  T  Q  I  S  S  T  F  I  F  V  *  F  L  *  I  Y  S  V  N  T  K  F  V  I  S  K  S  R  T  *  F  S  K  K  K  K  K  M  A  T  K  K  I  S  A  A  S  A  R  A  H  T  R  K  A  K  Q  K  S  S  I  P  F  P  S   : G  A  F  A  K  I  L  L  V  V  L  I  G  L  L  A  W  G  Y  Q  A  T  R  P  P  P  P  K  T  C  G  S  P  D  G  P  P  V  T  A  P  R  I  K  L  S  D  G  R  H  L  A  Y  K  E  T  G  V  L  R  D  N  A  K  Y  K  I  V  Y  I  H  G  Y  D  G  C  R  H  D  V  P  I  N  I  L  S  Q  :  D  V  I  E  S  L  G  V  Y  I  V  S  F  D  R  P  G  Y  G  E  S  D  P  N  P  K  R  T  V  K  S  L  A  F  D  I  Q  E  L  A  D  Q  L  G  L  G  S  K  F  Y  V  M  G  F  S  M  G  G  Q  A  V  W  T  C  L  R  Y  I  P  H  R :   L  A  G  A  A  L  I  A  P  V  V  N  Y  W  W  P  R  F  P  A  N  M  S  Q  E  A  F  N  L  R  L  P  Q  D  K  W  T  L  R  V  A  H  Y  L  P  W  L  T  Y  W  W  N  T  Q  K  F  F  P  S  C  S  A  A  G  R  N  P  A  I  F  S  S  K  D  L  E  L  V  S  K  Q  S  S  S  Q  D  Y  R  :  A  Q  V  R  Q  Q  G  E  Y  E  S  L  H  R  D  L  M  I  G  F  G  T  W  E  F  D  P  M  D  L  E  N  P  F  P  N  N  E  G  S  V  H  L  W  Q  G  D  E  D  R  L  S  P  V  T  L  Q  R  Y  I  S  Q  Q  L  P  W  I  Q  Y  H  E  I  P  G  A  G  H  L  I  P  M  I  D  G  I  G  E  K  I  F  K  T  L  L  T  A  *  T  H  H  F  Y  S  Y  A  Q  G  F  I  L  H  V  V  M  C  F  K  L  S  T  Y  L  W  F  L  S  I  V  K  F  H  I  L  M  S  K  S  F  D  F  E  R  N  I  L  Y  Y  K  F  F  C  :  T  Q  I  R  N  H  M  E  K  :  *  F  L  *  K  K  K  K </second_frame>
            <third_frame>   K  I  S  N  N  Y  *  I  S  E  M  R  L  R  S  L  Q  P  S  F  L  Y  N  F  C  K  S  T  V  *  I  Q  N  L  *  F  Q  N  Q  E  L  D  S  A  K  K  K  K  K  W  Q  P  R  R  F  Q  Q  L  Q  L  G  L  I  L  V  K  L  S  K  K  V  L  F  L  F  L  L  :  G  H  L  R  K  F  F  W  L  F  *  L  G  Y  *  R  G  V  I  K  Q  H  D  H  L  P  L  R  P  V  D  P  Q  M  A  L  P  S  L  H  L  E  S  N  L  V  M  E  D  T  W  L  T  R  R  L  V  Y  L  E  I  M  Q  N  I  R  L  Y  I  S  M  G  T  M  V  V  G  M  M  F  Q  L  T  S  S  L  K :   M  S  S  K  V  *  E  C  T  L  F  P  L  T  D  L  V  M  E  K  V  I  L  I  Q  N  E  Q  S  R  A  *  L  L  T  Y  R  S  L  L  I  N  *  V  *  D  R  N  S  M  L  W  D  F  Q  W  G  D  R  L  F  G  P  V  S  D  T  F  L  T   : G  W  Q  V  L  L  L  L  H  Q  L  S  T  I  G  G  L  G  F  L  L  I  C  P  K  K  H  S  T  F  D  F  L  K  T  N  G  L  F  V  L  L  I  T  F  R  G  S  P  I  G  G  T  L  R  S  S  F  L  H  A  V  L  Q  V  A  T  L  Q  F  S  L  R  R  T  *  S  *  F  P  S  K  V  R  A  K  T  I  V :   H  R  *  D  N  K  E  N  M  N  P  S  T  A  T  *  *  L  D  S  E  H  G  N  S  I  Q  W  I  L  R  T  R  S  L  T  M  K  V  P  F  T  Y  G  K  A  M  R  I  G  S  R  P  S  H  Y  K  G  T  F  H  S  N  Y  H  G  S  N  I  M  K  F  Q  V  L  V  I  *  F  Q  *  L  M  E  L  E  R  K  S  S  R  L  F  *  L  R  K  L  T  I  F  I  A  T  R  K  V  S  S  C  T  S  *  C  V  L  S  C  L  H  I  S  G  F  C  R  S  L  S  F  I  F  *  C  Q  R  V  L  T  L  R  E  I  F  C  I  T  N  S  F  V :   L  K  F  E  I  T  W  K  S :   N  F  Y  K  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22368" stop="22263"/>
                    <exon start="20781" stop="20522"/>
                    <exon start="20440" stop="20229"/>
                    <exon start="19536" stop="19272"/>
                    <exon start="17420" stop="17130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKKKKKMATKKISAASARAHTRKAKQKSSIPFPSGAFAKILLVVLIGLLAWGYQATRPPPPKTCGSPDGPPVTAPRIKLSDGRHLAYKETGVLRDNAKYKIVYIHGYDGCRHDVPINILSQDVIESLGVYIVSFDRPGYGESDPNPKRTVKSLAFDIQELADQLGLGSKFYVMGFSMGGQAVWTCLRYIPHRLAGAALIAPVVNYWWPRFPANMSQEAFNLRLPQDKWTLRVAHYLPWLTYWWNTQKFFPSCSAAGRNPAIFSSKDLELVSKQSSSQDYRAQVRQQGEYESLHRDLMIGFGTWEFDPMDLENPFPNNEGSVHLWQGDEDRLSPVTLQRYISQQLPWIQYHEIPGAGHLIPMIDGIGEKIFKTLLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="17637" e_stop="16934"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="17637" e_stop="16934" e_length="704"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17637" stop="16934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17637" stop="16935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17636" stop="16934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAACATTTTT</gDNA_template>
            <first_frame> A  K  L  L  I  A  S  S  H  V  L  T  L  A  S  R  C  V  D  R  A  F  K  G  S  N  C  L  T  R  L  N  A  F  V  R  *  V  C  I  E  N  R  *  L  N  W  C  F  V  S  *  S  F  G  F  S  C  A  V  *  A  H  C  F  Y  Y  S  T  L  L  S  G  T  G  K  T  T  R  R  I  *  I  P  P  P  R  L  N  D  W  I  R  N  M  G  I  R  S  N  G  S  *  E  P  V  P  *  Q  *  R  F  R  S  L  M  A  R  R  *  G  *  A  L  A  R  H  T  T  K  V  H  F  T  A  I  T  M  D  P  I  S  *  N  S  R  C  W  S  F  D  S  N  D  *  W  N  W  R  E  N  L  Q  D  S  F  N  C  V  N  S  P  F  L  *  L  R  A  R  F  H  L  A  R  R  D  V  F  *  V  V  Y  I  S  L  V  F  V  D  R  *  V  S  Y  F  D  V  K  E  F  *  L  *  E  K  Y  F  V  L  Q  I  L  L  F  V  I  K  D  S  D  I  *  T  F   </first_frame>
            <second_frame>  Q  S  C  S  L  H  L  V  M  F  S  R  L  L  L  V  V  *  T  V  L  S  R  E  A  I  V  *  L  G  L  M  P  L  S  D  K  F  V  S  K  T  D  N  L  I  G  V  S  F  P  K  V  L  D  F  L  V  L  F  E  L  T  V  S  I  T  Q  L  S  F  Q  A  Q  V  R  Q  Q  G  E  Y  E  S  L  H  R  D  L  M  I  G  F  G  T  W  E  F  D  P  M  D  L  E  N  P  F  P  N  N  E  G  S  V  H  L  W  Q  G  D  E  D  R  L  S  P  V  T  L  Q  R  Y  I  S  Q  Q  L  P  W  I  Q  Y  H  E  I  P  G  A  G  H  L  I  P  M  I  D  G  I  G  E  K  I  F  K  T  L  L  T  A  *  T  H  H  F  Y  S  Y  A  Q  G  F  I  L  H  V  V  M  C  F  K  L  S  T  Y  L  W  F  L  S  I  V  K  F  H  I  L  M  S  K  S  F  D  F  E  R  N  I  L  Y  Y  K  F  F  C  L  *  L  R  I  V  I  F  K  H  F  </second_frame>
            <third_frame>   K  V  A  H  C  I  *  S  C  S  H  A  C  F  S  L  C  R  P  C  F  Q  G  K  Q  L  F  D  *  A  *  C  L  C  P  I  S  L  Y  R  K  Q  I  T  *  L  V  F  R  F  L  K  F  W  I  F  L  C  C  L  S  S  L  F  L  L  L  N  S  P  F  R  H  R  *  D  N  K  E  N  M  N  P  S  T  A  T  *  *  L  D  S  E  H  G  N  S  I  Q  W  I  L  R  T  R  S  L  T  M  K  V  P  F  T  Y  G  K  A  M  R  I  G  S  R  P  S  H  Y  K  G  T  F  H  S  N  Y  H  G  S  N  I  M  K  F  Q  V  L  V  I  *  F  Q  *  L  M  E  L  E  R  K  S  S  R  L  F  *  L  R  K  L  T  I  F  I  A  T  R  K  V  S  S  C  T  S  *  C  V  L  S  C  L  H  I  S  G  F  C  R  S  L  S  F  I  F  *  C  Q  R  V  L  T  L  R  E  I  F  C  I  T  N  S  F  V  C  N  *  G  *  *  Y  L  N  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17552" stop="17130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLMPLSDKFVSKTDNLIGVSFPKVLDFLVLFELTVSITQLSFQAQVRQQGEYESLHRDLMIGFGTWEFDPMDLENPFPNNEGSVHLWQGDEDRLSPVTLQRYISQQLPWIQYHEIPGAGHLIPMIDGIGEKIFKTLLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22917" PGL_stop="23357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22917" e_stop="23357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="22917" e_stop="23357" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22917" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCAATATTACACAATGTTATTGATATCAAAAAAACAATGTTAATCGAACTCTTCAAAAATGTAAAGTATTTGGAAGATCCGACTTACATGCAAGTATATAACAATATTTTTGAAGAGTCCCAACGACTTACGTGGGATATAATTATCAACAAAATATTCAAATTTGTTCAATGACAAAAAATGATCGTTGAATCCAATACTAAAACCAATAGCCCCTTTTTAGCTTTTACATAACAAAAGGCTCTCCAAGTAAAAATGTCTTCATAACTTTATCTCCCATTCCTTCAGCCCATGGAAACATATGACCTCCACCTTTCATTTCATGATAGTGAATCCATGGTAGTTTCTTCGCGATGAATCGTTGTAGAATGACTGGTACATGCCCGTCTTCATCGCCTTGCCAGATGTGAACGGACCCTTCCCCGTTATGGAATGGGT</gDNA_template>
            <first_frame> N  P  I  L  H  N  V  I  D  I  K  K  T  M  L  I  E  L  F  K  N  V  K  Y  L  E  D  P  T  Y  M  Q  V  Y  N  N  I  F  E  E  S  Q  R  L  T  W  D  I  I  I  N  K  I  F  K  F  V  Q  *  Q  K  M  I  V  E  S  N  T  K  T  N  S  P  F  L  A  F  T  *  Q  K  A  L  Q  V  K  M  S  S  *  L  Y  L  P  F  L  Q  P  M  E  T  Y  D  L  H  L  S  F  H  D  S  E  S  M  V  V  S  S  R  *  I  V  V  E  *  L  V  H  A  R  L  H  R  L  A  R  C  E  R  T  L  P  R  Y  G  M  G </first_frame>
            <second_frame>  I  Q  Y  Y  T  M  L  L  I  S  K  K  Q  C  *  S  N  S  S  K  M  *  S  I  W  K  I  R  L  T  C  K  Y  I  T  I  F  L  K  S  P  N  D  L  R  G  I  *  L  S  T  K  Y  S  N  L  F  N  D  K  K  *  S  L  N  P  I  L  K  P  I  A  P  F  *  L  L  H  N  K  R  L  S  K  *  K  C  L  H  N  F  I  S  H  S  F  S  P  W  K  H  M  T  S  T  F  H  F  M  I  V  N  P  W  *  F  L  R  D  E  S  L  *  N  D  W  Y  M  P  V  F  I  A  L  P  D  V  N  G  P  F  P  V  M  E  W   </second_frame>
            <third_frame>   S  N  I  T  Q  C  Y  *  Y  Q  K  N  N  V  N  R  T  L  Q  K  C  K  V  F  G  R  S  D  L  H  A  S  I  *  Q  Y  F  *  R  V  P  T  T  Y  V  G  Y  N  Y  Q  Q  N  I  Q  I  C  S  M  T  K  N  D  R  *  I  Q  Y  *  N  Q  *  P  L  F  S  F  Y  I  T  K  G  S  P  S  K  N  V  F  I  T  L  S  P  I  P  S  A  H  G  N  I  *  P  P  P  F  I  S  *  *  *  I  H  G  S  F  F  A  M  N  R  C  R  M  T  G  T  C  P  S  S  S  P  C  Q  M  *  T  D  P  S  P  L  W  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLf0038P23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30895" PGL_stop="28617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30895" e_stop="30777"/>
            <exon e_start="29909" e_stop="29647"/>
            <exon e_start="29514" e_stop="29303"/>
            <exon e_start="29194" e_stop="28930"/>
            <exon e_start="28653" e_stop="28617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.983" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="0.958"/>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="0.966"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="30895" e_stop="30777" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.983">
            <gDNA_intron_boundary i_start="30776" i_stop="29910" i_length="867"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29909" e_stop="29647" e_length="263"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29646" i_stop="29515" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="29514" e_stop="29303" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29302" i_stop="29195" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="29194" e_stop="28930" e_length="265"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28929" i_stop="28654" i_length="276"/>
          </intron>
          <exon e_serial="5" e_score="0.892">
            <gDNA_exon_boundary e_start="28653" e_stop="28617" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30895" stop="30777"/>
              <exon start="29909" stop="29647"/>
              <exon start="29514" stop="29385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29699" stop="29647"/>
              <exon start="29514" stop="29303"/>
              <exon start="29194" stop="28930"/>
              <exon start="28653" stop="28617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCTTTAAATTCTTTAAGAGAAGAAAAAAAAAATGAGCAAAAAAATTTCTTCAGCATCAGCCAGGTCTCATACTAGAAAAAATAAACAGATGAAGAGTTCAATTCCACTTCATTCAG : GGATGTTTGGGAAAATTGTAGCAGTCGTCTTTGTGGGGTTCGTGGCATATGCTTATCGAGCAATGCAGCCTCCTCCATCGAAAATTTGTGGCGCCCCTGATGGCCCTCCTGTTACATCACCTAGAGTTAAACTTAGCGATGGACGATACTTAGCTTACAAAGAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCG : GAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAGGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATATTCCTCACAG : ATTGGCTGGAGCAGCTCTTCTAGCACCTGTTACCAATTACTGGTGGCCTAACTTCCCCGCGAACTTGTCCAAGGAAGCGTTCAACCAACAGCTTCCTCAGGATATATGGAATCTTCGCGTTGCTCACTACCTTCCGTGGCTTACATACTCGTGGAACACACAGAAGTTTTTCCCTGCTTGTAGTGCTGCTGCTTACAACCCCGGTGCTCTTTCGTCTCAGGACCTAGAACTAATGCCCAAGTATCGCGCCAACAGAGATCTTTAT : GCTCAGGTGAGACAACAAGGACTACACGAGTCACTCT</gDNA_template>
            <first_frame> F  P  L  N  S  L  R  E  E  K  K  N  E  Q  K  N  F  F  S  I  S  Q  V  S  Y  *  K  K  *  T  D  E  E  F  N  S  T  S  F  R :   D  V  W  E  N  C  S  S  R  L  C  G  V  R  G  I  C  L  S  S  N  A  A  S  S  I  E  N  L  W  R  P  *  W  P  S  C  Y  I  T  *  S  *  T  *  R  W  T  I  L  S  L  Q  R  T  W  Y  T  K  R  S  S  K  T  *  D  C  V  H  P  R  I  *  F  *  Q  T  R  C  C  C  C  N  W  P  L  S   : G  G  Y  *  E  L  R  S  I  H  C  F  N  *  *  T  W  L  W  R  K  *  S  *  S  E  T  N  S  K  K  L  G  V  *  C  T  R  T  C  *  S  I  R  A  R  V  Q  I  L  R  H  W  I  F  D  G  R  T  S  C  L  D  L  A  Q  I  Y  S  S  Q  :  I  G  W  S  S  S  S  S  T  C  Y  Q  L  L  V  A  *  L  P  R  E  L  V  Q  G  S  V  Q  P  T  A  S  S  G  Y  M  E  S  S  R  C  S  L  P  S  V  A  Y  I  L  V  E  H  T  E  V  F  P  C  L  *  C  C  C  L  Q  P  R  C  S  F  V  S  G  P  R  T  N  A  Q  V  S  R  Q  Q  R  S  L   : C  S  G  E  T  T  R  T  T  R  V  T   </first_frame>
            <second_frame>  F  L  *  I  L  *  E  K  K  K  K  M  S  K  K  I  S  S  A  S  A  R  S  H  T  R  K  N  K  Q  M  K  S  S  I  P  L  H  S   : G  M  F  G  K  I  V  A  V  V  F  V  G  F  V  A  Y  A  Y  R  A  M  Q  P  P  P  S  K  I  C  G  A  P  D  G  P  P  V  T  S  P  R  V  K  L  S  D  G  R  Y  L  A  Y  K  E  H  G  I  P  R  D  Q  A  K  H  K  I  V  F  I  H  G  Y  D  S  N  R  H  D  A  V  V  A  T  G  L  S  P  :  E  V  I  E  N  L  G  V  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  N  P  K  R  T  V  K  S  L  A  F  D  V  Q  E  L  A  D  Q  L  G  L  G  S  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  T  L  L  K  Y  I  P  H  R :   L  A  G  A  A  L  L  A  P  V  T  N  Y  W  W  P  N  F  P  A  N  L  S  K  E  A  F  N  Q  Q  L  P  Q  D  I  W  N  L  R  V  A  H  Y  L  P  W  L  T  Y  S  W  N  T  Q  K  F  F  P  A  C  S  A  A  A  Y  N  P  G  A  L  S  S  Q  D  L  E  L  M  P  K  Y  R  A  N  R  D  L  Y  :  A  Q  V  R  Q  Q  G  L  H  E  S  L  </second_frame>
            <third_frame>   S  F  K  F  F  K  R  R  K  K  K  *  A  K  K  F  L  Q  H  Q  P  G  L  I  L  E  K  I  N  R  *  R  V  Q  F  H  F  I  Q  :  G  C  L  G  K  L  *  Q  S  S  L  W  G  S  W  H  M  L  I  E  Q  C  S  L  L  H  R  K  F  V  A  P  L  M  A  L  L  L  H  H  L  E  L  N  L  A  M  D  D  T  *  L  T  K  N  M  V  Y  Q  E  I  K  Q  N  I  R  L  C  S  S  T  D  M  I  L  T  D  T  M  L  L  L  Q  L  A  S  L  R :   R  L  L  R  T  *  E  Y  T  L  F  Q  L  I  D  L  V  M  E  K  V  I  L  I  R  N  E  Q  *  K  A  W  R  L  M  Y  K  N  L  L  I  N  *  G  S  G  P  N  S  T  S  L  D  F  R  W  E  D  K  L  F  G  P  C  S  N  I  F  L  T   : D  W  L  E  Q  L  F  *  H  L  L  P  I  T  G  G  L  T  S  P  R  T  C  P  R  K  R  S  T  N  S  F  L  R  I  Y  G  I  F  A  L  L  T  T  F  R  G  L  H  T  R  G  T  H  R  S  F  S  L  L  V  V  L  L  L  T  T  P  V  L  F  R  L  R  T  *  N  *  C  P  S  I  A  P  T  E  I  F  M :   L  R  *  D  N  K  D  Y  T  S  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30876" stop="30777"/>
                    <exon start="29909" stop="29647"/>
                    <exon start="29514" stop="29303"/>
                    <exon start="29194" stop="28930"/>
                    <exon start="28653" stop="28618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKKKMSKKISSASARSHTRKNKQMKSSIPLHSGMFGKIVAVVFVGFVAYAYRAMQPPPSKICGAPDGPPVTSPRVKLSDGRYLAYKEHGIPRDQAKHKIVFIHGYDSNRHDAVVATGLSPEVIENLGVYIVSIDRPGYGESDPNPKRTVKSLAFDVQELADQLGLGSKFYVIGFSMGGQAVWTLLKYIPHRLAGAALLAPVTNYWWPNFPANLSKEAFNQQLPQDIWNLRVAHYLPWLTYSWNTQKFFPACSAAAYNPGALSSQDLELMPKYRANRDLYAQVRQQGLHESL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29748" e_stop="29313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="29748" e_stop="29313" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29748" stop="29313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCGGTAACTCTCCTCTCATCCGTTAATTATCTTAACTCCATCTTTATTTCTTAGTAGCTCAGTTGGTTGACTAGCTGAACTTTTTACCTTGTTCATTTTTATAACTTTTTTGTTAGTAAATTGCTGTTTTTCCAGGAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAGGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATA</gDNA_template>
            <first_frame> E  H  G  I  P  R  D  Q  A  K  H  K  I  V  F  I  H  G  Y  D  S  N  R  H  D  A  V  V  A  T  G  L  S  P  V  T  L  L  S  S  V  N  Y  L  N  S  I  F  I  S  *  *  L  S  W  L  T  S  *  T  F  Y  L  V  H  F  Y  N  F  F  V  S  K  L  L  F  F  Q  E  V  I  E  N  L  G  V  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  N  P  K  R  T  V  K  S  L  A  F  D  V  Q  E  L  A  D  Q  L  G  L  G  S  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  T  L  L  K  Y  </first_frame>
            <second_frame>  N  M  V  Y  Q  E  I  K  Q  N  I  R  L  C  S  S  T  D  M  I  L  T  D  T  M  L  L  L  Q  L  A  S  L  R  *  L  S  S  H  P  L  I  I  L  T  P  S  L  F  L  S  S  S  V  G  *  L  A  E  L  F  T  L  F  I  F  I  T  F  L  L  V  N  C  C  F  S  R  R  L  L  R  T  *  E  Y  T  L  F  Q  L  I  D  L  V  M  E  K  V  I  L  I  R  N  E  Q  *  K  A  W  R  L  M  Y  K  N  L  L  I  N  *  G  S  G  P  N  S  T  S  L  D  F  R  W  E  D  K  L  F  G  P  C  S  N  I </second_frame>
            <third_frame>   T  W  Y  T  K  R  S  S  K  T  *  D  C  V  H  P  R  I  *  F  *  Q  T  R  C  C  C  C  N  W  P  L  S  G  N  S  P  L  I  R  *  L  S  *  L  H  L  Y  F  L  V  A  Q  L  V  D  *  L  N  F  L  P  C  S  F  L  *  L  F  C  *  *  I  A  V  F  P  G  G  Y  *  E  L  R  S  I  H  C  F  N  *  *  T  W  L  W  R  K  *  S  *  S  E  T  N  S  K  K  L  G  V  *  C  T  R  T  C  *  S  I  R  A  R  V  Q  I  L  R  H  W  I  F  D  G  R  T  S  C  L  D  L  A  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29571" stop="29314"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFYLVHFYNFFVSKLLFFQEVIENLGVYIVSIDRPGYGESDPNPKRTVKSLAFDVQELADQLGLGSKFYVIGFSMGGQAVWTLLKY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="31680" PGL_stop="34164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31680" e_stop="31953"/>
            <exon e_start="32658" e_stop="32869"/>
            <exon e_start="33134" e_stop="33401"/>
            <exon e_start="33755" e_stop="34164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.956"/>
          <exon-intron don_prob="0.558" acc_prob="0.990" e_score="0.948"/>
          <exon-intron don_prob="0.869" acc_prob="0.750" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="31680" e_stop="31953" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31954" i_stop="32657" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="32658" e_stop="32869" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.558" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="33134" e_stop="33401" e_length="268"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="0.750">
            <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33755" e_stop="34164" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31680" stop="31953"/>
              <exon start="32658" stop="32869"/>
              <exon start="33134" stop="33286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31853" stop="31953"/>
              <exon start="32658" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="33806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32743" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="33848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32747" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="34050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32747" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="33967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32747" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="33838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32836" stop="32869"/>
              <exon start="33134" stop="33294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32850" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="34164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33175" stop="33401"/>
              <exon start="33755" stop="34164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33190" stop="33401"/>
              <exon start="33755" stop="34151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33206" stop="33401"/>
              <exon start="33755" stop="34072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33264" stop="33401"/>
              <exon start="33755" stop="34145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33335" stop="33401"/>
              <exon start="33755" stop="34161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33761" stop="34161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33794" stop="34151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCT : GAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG : ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG : GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCT</gDNA_template>
            <first_frame> I  F  F  G  N  D  D  K  N  D  S  N  F  W  Y  C  D  I  G  T  N  L  *  G  N  Y  S  T  I  T  K  D  L  W  F  T  K  W  T  F  N  Y  S  T  K  N  *  A  F  *  W  E  I  F  G  L  *  R  K  W  C  S  *  R  *  S  K  T  Q  I  C  I  H  S  W  L  *  L  C  *  T  *  C  C  F  A  H  N  Y  F  S   : *  G  Y  A  K  F  G  N  L  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  T  K  N  T  K  D  L  S  S  *  Y  *  R  I  S  *  S  I  G  I  G  T  *  I  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q  :  I  G  W  S  N  S  S  N  T  S  D  *  L  L  V  G  *  F  P  S  K  L  D  *  T  S  V  L  R  T  A  R  A  G  S  M  D  V  A  D  C  T  L  L  T  M  A  D  L  L  V  E  H  S  K  I  V  S  F  F  Q  R  C  N  V  Q  *  G  Y  S  V  R  A  R  Q  S  S  N  A  Y  L  *  F  V  S  E  *  I  S   : G  L  G  K  T  A  R  G  V  R  V  H  P  S  R  H  N  D  R  V  R  D  M  G  V  *  S  D  G  T  R  K  S  I  P  *  R  G  R  V  R  S  H  L  A  R  R  *  R  R  A  C  T  S  H  S  T  T  I  H  R  E  E  T  T  M  D  S  L  S  *  N  E  R  W  R  S  Y  V  S  M  G  *  R  N  G  R  *  S  Y  E  D  I  F  T  W  R  A  F  C  Y  V  K  A  I  K  G  F  *  Y  W  I  Q  *  S  F  L  S  L  N  K  F  E  Y  V  V  N  N  *  I  L  L  K  L  I  L  A </first_frame>
            <second_frame>  F  F  L  G  M  T  I  K  M  I  A  I  F  G  I  V  I  L  A  L  I  Y  K  A  I  I  P  P  S  P  K  I  C  G  S  P  N  G  P  L  I  T  A  P  R  I  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  E  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  I  S  P  :  E  V  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  Q  R  T  P  K  T  L  A  L  D  I  E  E  L  V  D  Q  L  E  L  G  P  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H  R :   L  A  G  A  I  L  L  T  P  V  T  N  Y  W  W  G  S  F  P  A  N  L  T  K  Q  A  Y  Y  E  Q  L  V  Q  D  Q  W  T  L  R  I  A  H  Y  L  P  W  L  T  Y  W  W  N  T  Q  R  L  F  P  S  S  S  V  A  T  F  S  E  D  I  L  F  E  Q  D  R  V  L  M  P  I  F  D  S  Y  Q  S  K  Y  R  :  D  L  V  R  Q  Q  G  E  Y  E  S  I  H  R  D  I  M  I  G  F  G  T  W  E  F  D  P  M  E  L  E  N  P  F  P  N  G  E  G  S  V  H  I  W  Q  G  D  E  D  G  H  V  P  V  I  L  Q  R  F  I  A  K  K  L  P  W  I  H  Y  H  E  M  K  G  G  G  H  M  F  P  W  A  E  G  M  G  D  K  V  M  K  T  F  L  L  G  E  P  F  V  M  *  K  L  *  R  A  F  S  I  G  F  N  D  H  F  C  H  *  T  N  L  N  M  *  L  I  I  K  F  Y  L  S  *  F  *   </second_frame>
            <third_frame>   F  F  W  E  *  R  *  K  *  *  Q  F  L  V  L  *  Y  W  H  *  F  I  R  Q  L  F  H  H  H  Q  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  L  S  F  L  M  G  D  I  W  L  I  K  K  M  V  F  L  E  M  K  Q  N  T  N  L  Y  S  F  M  A  L  I  V  L  D  M  M  L  L  C  S  Q  L  F  L  L :   R  L  C  K  V  W  E  S  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  H  K  E  H  Q  R  P  *  L  L  I  L  K  N  *  L  I  N  W  N  W  D  L  N  F  M  L  *  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T   : D  W  L  E  Q  F  F  *  H  Q  *  L  T  T  G  G  V  V  S  Q  Q  T  *  L  N  K  R  T  T  N  S  S  C  R  I  N  G  R  C  G  L  H  T  T  Y  H  G  *  L  T  G  G  T  L  K  D  C  F  L  L  P  A  L  Q  R  S  V  R  I  F  C  S  S  K  T  E  F  *  C  L  S  L  I  R  I  R  V  N  I  G :   T  W  *  D  S  K  G  S  T  S  P  S  I  A  T  *  *  *  G  S  G  H  G  S  L  I  R  W  N  *  K  I  H  S  L  T  G  K  G  P  F  T  S  G  K  A  M  K  T  G  M  Y  Q  S  F  Y  N  D  S  S  R  R  N  Y  H  G  F  T  I  M  K  *  K  V  E  V  I  C  F  H  G  L  K  E  W  E  I  K  L  *  R  H  F  Y  L  E  S  L  L  L  C  K  S  Y  K  G  L  L  V  L  D  S  M  I  I  F  V  I  E  Q  I  *  I  C  S  *  *  L  N  S  T  *  V  D  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31681" stop="31953"/>
                    <exon start="32658" stop="32869"/>
                    <exon start="33134" stop="33401"/>
                    <exon start="33755" stop="34060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLGMTIKMIAIFGIVILALIYKAIIPPSPKICGSPNGPLITAPRIKLSDGRYLAYKENGVPRDEAKHKFVFIHGFDCVRHDVALLTTISPEVMQSLGIYIVSIDRPGYGESDPHPQRTPKTLALDIEELVDQLELGPKFYVIGFSMGGQAVWGLLKYIPHRLAGAILLTPVTNYWWGSFPANLTKQAYYEQLVQDQWTLRIAHYLPWLTYWWNTQRLFPSSSVATFSEDILFEQDRVLMPIFDSYQSKYRDLVRQQGEYESIHRDIMIGFGTWEFDPMELENPFPNGEGSVHIWQGDEDGHVPVILQRFIAKKLPWIHYHEMKGGGHMFPWAEGMGDKVMKTFLLGEPFVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31686" e_stop="31957"/>
            <exon e_start="32658" e_stop="32869"/>
            <exon e_start="33134" e_stop="33401"/>
            <exon e_start="33755" e_stop="34164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.735" acc_prob="0.998" e_score="0.908"/>
          <exon-intron don_prob="0.558" acc_prob="0.990" e_score="0.943"/>
          <exon-intron don_prob="0.869" acc_prob="0.750" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="31686" e_stop="31957" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.735" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31958" i_stop="32657" i_length="700"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="32658" e_stop="32869" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.558" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="33134" e_stop="33401" e_length="268"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="0.750">
            <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33755" e_stop="34164" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31686" stop="31957"/>
              <exon start="32658" stop="32869"/>
              <exon start="33134" stop="33146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31823" stop="31957"/>
              <exon start="32658" stop="32869"/>
              <exon start="33134" stop="33301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32743" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="33848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32747" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="34050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32747" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="33967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32747" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="33838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32836" stop="32869"/>
              <exon start="33134" stop="33294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32850" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="34164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33175" stop="33401"/>
              <exon start="33755" stop="34164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33190" stop="33401"/>
              <exon start="33755" stop="34151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33206" stop="33401"/>
              <exon start="33755" stop="34072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33264" stop="33401"/>
              <exon start="33755" stop="34145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33335" stop="33401"/>
              <exon start="33755" stop="34161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33761" stop="34161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33794" stop="34151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTAT : GAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG : ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG : GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCT</gDNA_template>
            <first_frame> F  G  N  D  D  K  N  D  S  N  F  W  Y  C  D  I  G  T  N  L  *  G  N  Y  S  T  I  T  K  D  L  W  F  T  K  W  T  F  N  Y  S  T  K  N  *  A  F  *  W  E  I  F  G  L  *  R  K  W  C  S  *  R  *  S  K  T  Q  I  C  I  H  S  W  L  *  L  C  *  T  *  C  C  F  A  H  N  Y  F  S  C  M :   R  L  C  K  V  W  E  S  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  H  K  E  H  Q  R  P  *  L  L  I  L  K  N  *  L  I  N  W  N  W  D  L  N  F  M  L  *  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T   : D  W  L  E  Q  F  F  *  H  Q  *  L  T  T  G  G  V  V  S  Q  Q  T  *  L  N  K  R  T  T  N  S  S  C  R  I  N  G  R  C  G  L  H  T  T  Y  H  G  *  L  T  G  G  T  L  K  D  C  F  L  L  P  A  L  Q  R  S  V  R  I  F  C  S  S  K  T  E  F  *  C  L  S  L  I  R  I  R  V  N  I  G :   T  W  *  D  S  K  G  S  T  S  P  S  I  A  T  *  *  *  G  S  G  H  G  S  L  I  R  W  N  *  K  I  H  S  L  T  G  K  G  P  F  T  S  G  K  A  M  K  T  G  M  Y  Q  S  F  Y  N  D  S  S  R  R  N  Y  H  G  F  T  I  M  K  *  K  V  E  V  I  C  F  H  G  L  K  E  W  E  I  K  L  *  R  H  F  Y  L  E  S  L  L  L  C  K  S  Y  K  G  L  L  V  L  D  S  M  I  I  F  V  I  E  Q  I  *  I  C  S  *  *  L  N  S  T  *  V  D  F  S  </first_frame>
            <second_frame>  L  G  M  T  I  K  M  I  A  I  F  G  I  V  I  L  A  L  I  Y  K  A  I  I  P  P  S  P  K  I  C  G  S  P  N  G  P  L  I  T  A  P  R  I  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  E  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  I  S  P  V   : *  G  Y  A  K  F  G  N  L  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  T  K  N  T  K  D  L  S  S  *  Y  *  R  I  S  *  S  I  G  I  G  T  *  I  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q  :  I  G  W  S  N  S  S  N  T  S  D  *  L  L  V  G  *  F  P  S  K  L  D  *  T  S  V  L  R  T  A  R  A  G  S  M  D  V  A  D  C  T  L  L  T  M  A  D  L  L  V  E  H  S  K  I  V  S  F  F  Q  R  C  N  V  Q  *  G  Y  S  V  R  A  R  Q  S  S  N  A  Y  L  *  F  V  S  E  *  I  S   : G  L  G  K  T  A  R  G  V  R  V  H  P  S  R  H  N  D  R  V  R  D  M  G  V  *  S  D  G  T  R  K  S  I  P  *  R  G  R  V  R  S  H  L  A  R  R  *  R  R  A  C  T  S  H  S  T  T  I  H  R  E  E  T  T  M  D  S  L  S  *  N  E  R  W  R  S  Y  V  S  M  G  *  R  N  G  R  *  S  Y  E  D  I  F  T  W  R  A  F  C  Y  V  K  A  I  K  G  F  *  Y  W  I  Q  *  S  F  L  S  L  N  K  F  E  Y  V  V  N  N  *  I  L  L  K  L  I  L  A </second_frame>
            <third_frame>   W  E  *  R  *  K  *  *  Q  F  L  V  L  *  Y  W  H  *  F  I  R  Q  L  F  H  H  H  Q  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  L  S  F  L  M  G  D  I  W  L  I  K  K  M  V  F  L  E  M  K  Q  N  T  N  L  Y  S  F  M  A  L  I  V  L  D  M  M  L  L  C  S  Q  L  F  L  L  Y  :  E  V  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  Q  R  T  P  K  T  L  A  L  D  I  E  E  L  V  D  Q  L  E  L  G  P  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H  R :   L  A  G  A  I  L  L  T  P  V  T  N  Y  W  W  G  S  F  P  A  N  L  T  K  Q  A  Y  Y  E  Q  L  V  Q  D  Q  W  T  L  R  I  A  H  Y  L  P  W  L  T  Y  W  W  N  T  Q  R  L  F  P  S  S  S  V  A  T  F  S  E  D  I  L  F  E  Q  D  R  V  L  M  P  I  F  D  S  Y  Q  S  K  Y  R  :  D  L  V  R  Q  Q  G  E  Y  E  S  I  H  R  D  I  M  I  G  F  G  T  W  E  F  D  P  M  E  L  E  N  P  F  P  N  G  E  G  S  V  H  I  W  Q  G  D  E  D  G  H  V  P  V  I  L  Q  R  F  I  A  K  K  L  P  W  I  H  Y  H  E  M  K  G  G  G  H  M  F  P  W  A  E  G  M  G  D  K  V  M  K  T  F  L  L  G  E  P  F  V  M  *  K  L  *  R  A  F  S  I  G  F  N  D  H  F  C  H  *  T  N  L  N  M  *  L  I  I  K  F  Y  L  S  *  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31802" stop="31957"/>
                    <exon start="32658" stop="32869"/>
                    <exon start="33134" stop="33401"/>
                    <exon start="33755" stop="34060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQHQELSFLMGDIWLIKKMVFLEMKQNTNLYSFMALIVLDMMLLCSQLFLLYEVMQSLGIYIVSIDRPGYGESDPHPQRTPKTLALDIEELVDQLELGPKFYVIGFSMGGQAVWGLLKYIPHRLAGAILLTPVTNYWWGSFPANLTKQAYYEQLVQDQWTLRIAHYLPWLTYWWNTQRLFPSSSVATFSEDILFEQDRVLMPIFDSYQSKYRDLVRQQGEYESIHRDIMIGFGTWEFDPMELENPFPNGEGSVHIWQGDEDGHVPVILQRFIAKKLPWIHYHEMKGGGHMFPWAEGMGDKVMKTFLLGEPFVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 120 chains have been computed
$ 
$ memory statistics:
$ 164016 bytes spliced alignments in total
$ 68 spliced alignments have been stored
$ 2412 bytes was the average size of a spliced alignment
$ 13792 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2298 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 133 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:24:07
-->
