<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:38:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308572" ref_strand="+" ref_description="SGN-E308572 [cLEY-21-K23]">
      <seq>gcatcttatacacattatatttttctggttctttgccttttaatttagtctctgcgcctctttggatttatcgaaggtacaaatataaaggatgcagatatttgtcaaatcactcacaggccagaccatgacactagatgtggaaacctctgacaccattgatagtgtgaaagacaaaatctatgaaaaaacagggataaaagcagaacatcagaggttaatatttggtggcaagcaactggaaaatggtactgtgaaagattatgacatcaaaagagagtccactcttcatcttgttcttcgcttgcttggtgcagctacatcttgaattttcttacactatgatttttgtactttatgtttaaagcttttaagtcaactcagaaatgagcagatgaataagttacttggatgtataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="7839" stop="4924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7539" g_stop="7464" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7463" i_stop="7139" i_length="325">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7138" g_stop="6798" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="417" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6797" i_stop="5242" i_length="1556">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5241" g_stop="5224" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="435" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E308572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7539" e_stop="7464"/>
          <exon e_start="7138" e_stop="6798"/>
          <exon e_start="5241" e_stop="5224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTTATACACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAGATATGCTTCAGGATAATTTAATGCTATATAGTATTTTTCTTTTAAGGGGTGTGCAAAAATCTTAAAGAGACAGATAATACGAACAAAACAAAACATTTTTGAAGCAAGATTGTTTATGTTTTACAACATTTCCAGAATCTGGGGAATAGAGTGCTTTAACATACTATTGGGGAGTCATCCTGATAAAATTACTCTAGCAAAACTACAAATCTTCAGTCTAAGCTATCTAAGCTAGAACTCAAGGGGAAACCATCTAACAAAAATATTCATATAGTCTCACTCATCCACGAGTTTTACTACTATGAAAGTGGTTCATGTTCTCGAATAGAAGCTTCATCAAAAGGTACATCTCGGCTAGGGGACCATCGCCCATCACCACCATATGAGTGCTTAGTATGTGGTCTATGATGTTCTTCCTGATATTAAGTCTCACCAAATGGATCATCTGTTCTTGGCGACCATCTGTCGTCTCCATGAGACCGTGCATTGTGTGATTGACGGCGTTGTTCTCTGTACTTTGAAGTTTCATCAGATGAATGATCAAGACTGGGAGATTTCATGTCTTGCCTGTCTCTGCTACTCTTTTGACGCATCCGAGAATGTCTGCTTCTGTCCATTGAACTCCTATCTGATGAATAATCATGGCTGGGGGATCTTCGATCACCTCGTTTCTTTTCATGTGTTCTCTGTCTATGAGAGAAATCTTCCATGTCCATGGACCTCTCCTGTCTTCCAGATGAGCGCTCTCGACTTATTGACCTGTCCTGTCGATGAGAATGGTTGCTTCTTTTATCATGCTTGTGAGAAGAGTCTCCAGCATCCTCCAAGCTTCTTGCTCGCCTGGGTGGTGATGGAGCCTACATGGGGTTAATTCAAGTCATCAGAATCACTAAACAGATAAATTTATTTTACGTCCTGTATACCATCATTACCCAGACTCCACTTCCTCATTTTGACTTAACCAGTACTTTCTCCTGAGGATTAAAGTCACTTGTGTAGTCAGAGAACTTGAATGCCATGGATAATGGTAAGAGCGAAACTAGAGGAGAGGAAACTATCATAAGCTACAGAACTAAGCTTCAGTTACTGTAAAAGTGTAGAGCGAACATGAACAATACGATTTTCAAGAGATCACCTATGTTCTTCCCAAAAGGCCAAAACCAAATGTCCAAGAACTGGATTACCTGAAAGCGTGACATGTATCTTCCCTCAGGAGGAGGTGGTATACCAAGCCTCTTTAAATCATCCCACGGAATTGGCCGTCTGTTTCAAGAAGTATCCTGAAGTTAGCGAAAAATGCATATACAAAATAGTAGCATGGAAAATAGTGCAATAGGAGAATGTCTTCAAGACAATGCCCTGTAGCAAGCTAAGGCTTTAAGCACTGTTCAGACCTACGGAATGTTCCCTTTTTTTAATTTATTTTTCCTCAACAAAACTGTGTTCCCTTCTGTTGAGGCACAACATAATCTTCACAGTCGGAATACCAGTACTCAACCACAGATCAATTAAAAAAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>GCATCTTATACACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAG.....................................................................................................................................................................................................................................................................................................................................GTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543088" ref_strand="+" ref_description="SGN-E543088 [TUS-64-L15](-)">
      <seq>gagcttccaatgtaaattagtattcttgatgtttcattataacttgtaacacatatagtaattatacttggttcgatgaaattgtttgatcttaaatttatgcaacaaatatcgctcgtaagtctacttggatcttgatgagtaagaacaaatgttttggttttgtaatggatatttgtatattggtcaaatttttcttacattgaactattcctaccaggagaatggctattagcttagtggtagagcggaggatccttgattattatgttgaatgtgaggtgtttcattgttcttttatttaggtacaaatataaaggatgcagatatttgtcaaatcactcacaggccagaccatgacactagatgtggaaacctctgacaccattgatagtgtgaaagacaaaatctatgaaaaaacagggataaaagcagaacatcagaggttaatatttggtggcaagcaactggaaaatggtactgtgaaagattatgacatcaaaagagagtccactcttcatcttgttcttcgcttgcttggtgcagctacatcttgaattttcttacactatgatttttgtactttatgtttaaagcttttaagtcaactcagaaatgagcagatgaataagttacttggatgtatatatgcttcatcattgtgtttactactacttgtcttcaaacaagagatatgcttcaggataatttaatgctatatagtatttttcttttaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="7743" stop="4918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7443" g_stop="6707" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="754"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E543088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7443" e_stop="6707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAGATATGCTTCAGGATAATTTAATGCTATATAGTATTTTTCTTTTAA</genome_strand>
        <mrna_strand>GAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAGATATGCTTCAGGATAATTTAATGCTATATAGTATTTTTCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356321" ref_strand="+" ref_description="SGN-E356321 [cTOS-20-C20]">
      <seq>acattatatttttctggttctttgccttttaatttagtctctgcgcctctttggatttatcgaaggtactctcacttttctttttgagcttccaatgtaaattagtattcttgatgtttcattataacttgtaacacatatagtaattatacttggttcgatgaaattgtttgatcttaaatttatgcaacaaatatcgctcgtaagtctacttggatcttgatgagtaagaacaaatgttttggttttgtaatggatatttgtatattggtcaaatttttcttacattgaactattcctaccaggagaatggctattagcttagtggtagagcggaggatccttgattattatgttgaatgtgaggtgtttcattgttcttttatttaggtacaaatataaaggatgcagatatttgtcaaatcactcacaggccagaccatgacactagatgtggaaacctctgacaccattgatagtgtgaaagacaaaatctatgaaaaaacagggataaaagcagaacatcagaggttaatatttggtggcaagcaactggaaaatggtactgtgaaagattatgacatcaaaagagagtccactcttcatcttgttcttcgcttgcttggtgcagctacatcttgaattttcttacactatgatttttgtactttatgtttaaagcttttaagtcaactcagaaatgagcagatgaataaagtacttggatgtatatatgcttcatcattgtgtttactactacttgtcttcaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="7828" stop="6449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7528" g_stop="6752" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E356321" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7528" e_stop="6752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAG</genome_strand>
        <mrna_strand>ACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAAGTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543089" ref_strand="+" ref_description="SGN-E543089 [TUS-64-L15]">
      <seq>cacattatatttttctggttctttgccttttaatttagtctctgcgcctctttggatttatcgaaggtactctcacttttctttttgagcttccaatgtaaattagtattcttgatgtttcattataacttgtaacacatatagtaattatacttggttcgatgaaattgtttgatcttaaatttatgcaacaaatatcgctcgtaagtctacttggatcttgatgagtaagaacaaatgttttggttttgtaatggatatttgtatattggtcaaatttttcttacattgaactattcctaccaggagaatggctattagcttagtggtagagcggaggatccttgattattatgttgaatgtgaggtgtttcattgttcttttatttaggtacaaatataaaggatgcagatatttgtcaaatcactcacaggccagaccatgacactagatgtggaaacctctgacaccattgatagtgtgaaagacaaaatctatgaaaaaacagggataaaagcagaacatcagaggttaatatttggtggcaagcaactggaaaatggtactgtgaaagattatgacatcaaaagagagtccactcttcatcttgttcttcgcttgcttggtgcagctacatcttgaattttcttacactatgatttttgtactttatgtttaaagcttttaagtcaactcagaaatgagcagatgaataagttacttggatgtatatatgcttcatcattgtgtttactacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="7829" stop="6470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7529" g_stop="6770" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E543089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7529" e_stop="6770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTA</genome_strand>
        <mrna_strand>CACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308788" ref_strand="+" ref_description="SGN-E308788 [cLEZ-14-F15]">
      <seq>taacttgtaacacatatagtaatgatacttggttcgatgaaattgtttgatcttaaatttatgcaacaaatatcgctcgtaagtctacttggatcttgatgagtaagaacaaatgttctggttttgtaatggatatttgtatattggtaaaatttttcttacattgaactattcctaccaagagaatggctattagcttagtggtagagcggaggatccttgattattatgtcgaatgtgaggtgtttcattgctcttttatttaggtacaaatattaaggatgcaaatgtttgtcaaatcactctcaggccagaccatgacactagatgtggaaacctctgacaccattgatagtgtgaaagacagaatctatgaaaaaacagggataaaagcagaacatcacaggtgaatatttggtggcaagcaactggaaaatggtactgtgaaagattatgacatcaaaagagagtccactcttcatcttgctcttcgcttgcttggtgcagctacatgttgaattttcttacactatgattattgtactttatgttgaaagctttgaagtcggctcagaaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="7704" stop="6523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7404" g_stop="6823" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E308788" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7404" e_stop="6823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGC</genome_strand>
        <mrna_strand>TAACTTGTAACACATATAGTAATGATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTCTGGTTTTGTAATGGATATTTGTATATTGGTAAAATTTTTCTTACATTGAACTATTCCTACCAAGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTCGAATGTGAGGTGTTTCATTGCTCTTTTATTTAGGTACAAATATTAAGGATGCAAATGTTTGTCAAATCACTCTCAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAGAATCTATGAAAAAACAGGGATAAAAGCAGAACATCACAGGTGAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGCTCTTCGCTTGCTTGGTGCAGCTACATGTTGAATTTTCTTACACTATGATTATTGTACTTTATGTTGAAAGCTTTGAAGTCGGCTCAGAAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303347" ref_strand="+" ref_description="SGN-E303347 [cLEX-2-G22]">
      <seq>acattatatttttctggttctttgccttttaatttagtctctgcgcctctttggatttatcgaaggtactctcacttttctttttgagcttccaatgtaaattagtattcttgatgtttcattataacttgtcacacatatagtgattatacttggttcgatgaaattgtttgatcttaaatttatgcaacaaatatcgctcgtaagtctacttggatcttgatgagtaagaacaaatgttttggttttgtaatggatatttgtatattggtcaaatttttcttacattgaactattcctaccaagagaatggctattagcttattggtagagcggaggatccttgattattatgttgaatgtgaggcgtttcattgttcttttatttaggtacaaatataaaggatgcagatatttgtcaaatcactcacaggccagaccatgacactagatgtggaaacctctgacaccattgatagtgtgaaagacaaaatctatgaaaaaacagggatcaaagcagaacatcacaggttaatatttggtggcaagcaactggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="7828" stop="6667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7528" g_stop="6967" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E303347" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7528" e_stop="6967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATG</genome_strand>
        <mrna_strand>ACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTCACACATATAGTGATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAAGAGAATGGCTATTAGCTTATTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGCGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATCAAAGCAGAACATCACAGGTTAATATTTGGTGGCAAGCAACTGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720927" ref_strand="+" ref_description="SGN-E720927 [FC12BB01]">
      <seq>atctttctttgtgtctaagcaaaagcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccaccaaaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttgatggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgttgtccttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggttggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16530" stop="4924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16230" g_stop="16096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="313" r_length="178" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="584" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14624" i_stop="14172" i_length="453">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.589" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14171" g_stop="14131" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="625" r_length="41" r_score="0.561"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E720927" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16230" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14625"/>
          <exon e_start="14171" e_stop="14131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTTGTGTCTAAGCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTGGTTGTCTATATGTGAATGCGACCTTGCTCTTAGGTTATATATGCTGCTGATTTCTATTTACTGTGTGGGCGATCACCATTTTTTGGGTTTAAAGTTTATTATACTGACTTGTTAGACGCCCAAAGTATAACCAATTGAGTGGTGAAATACTTCAACAAGTTGGCAAGTTGTAAAATCTTCTGGGTGTTAGTATATCCTACAACAGGCTTGTGGGGTGCCTAGTATGTTTCTTAATTTAGACCATAATGAAAGTCCGCCAAAACCTTTAATCCTTCATCTTATGCTTTGTTGGTGGGCAGGTGACATATATTTTGTAGAACACAACCAGACTTGGACTCAGCCGTTGGTTCTTGATCCTTGTGCTTATGCAAACCGAATAGGTAATAGAAATAGGTTCTTTTGTGCCATAGATTCATATATAAAGGACTTTACTAAAAACAATCAAAGGTTATAAAATATAACGACAAGCAAAACTCAAAAGACCACCC</genome_strand>
        <mrna_strand>ATCTTTCTTTGTGTCTAAGCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCACCAAAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGATGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTG-TTGTCCTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTTGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303036" ref_strand="+" ref_description="SGN-E303036 [cLEW-26-M22]">
      <seq>aaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaatcttggttgtctatatgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16496" stop="14303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16196" g_stop="16096" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="279" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14604" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="572" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="583"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E303036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16196" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTGGTTGTCTATATGTGA</genome_strand>
        <mrna_strand>AAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTGGTTGTCTATATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371042" ref_strand="+" ref_description="SGN-E371042 [TUS-29-D9]">
      <seq>aaaagcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16510" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16210" g_stop="16096" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="293" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14618" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="572" r_length="279" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E371042" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16210" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTGG</genome_strand>
        <mrna_strand>AAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308283" ref_strand="+" ref_description="SGN-E308283 [cLEZ-6-A9](-)">
      <seq>caatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttgaatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattggatatgatgatgcaccttgttatggtgggagaattcaagagtatatttgccaatataaaacattattgtgcaatgcaaaagattctatttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16142" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15842" g_stop="15814" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14896" g_stop="14618" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="309" r_length="280" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E308283" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15842" e_stop="15814"/>
          <exon e_start="14896" e_stop="14618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAAT-TTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTGG</genome_strand>
        <mrna_strand>CAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGAATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTGGATATGATGATGCACCTTGTTATGGTGGGAGAATTCAAGAGTATATTTGCCAATATAAAACATTATTGTGCAATGCAAAAGATTCTATTTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371041" ref_strand="+" ref_description="SGN-E371041 [TUS-29-D9](-)">
      <seq>caaaagcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16511" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16211" g_stop="16096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="294" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14619" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="572" r_length="278" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E371041" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16211" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTG</genome_strand>
        <mrna_strand>CAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280476" ref_strand="+" ref_description="SGN-E280476 [cLER-1-C15](-)">
      <seq>ctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16487" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16187" g_stop="16096" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="270" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14619" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="548" r_length="278" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E280476" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16187" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTG</genome_strand>
        <mrna_strand>CTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336012" ref_strand="+" ref_description="SGN-E336012 [cTOE-6-F14]">
      <seq>aaagcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttnnnnnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16509" stop="14328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16209" g_stop="16096" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="292" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="564" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E336012" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16209" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</genome_strand>
        <mrna_strand>AAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687603" ref_strand="+" ref_description="SGN-E687603 [T3_tus_79_A18]">
      <seq>gtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16411" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16111" g_stop="16096" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="194" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="466" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="476"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E687603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16111" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</genome_strand>
        <mrna_strand>GTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322946" ref_strand="+" ref_description="SGN-E322946 [cTOB-30-K22]">
      <seq>tgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaaaacagcaatctggtactggtttcatggaaagatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatatttaatatgacgaatgcacttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16410" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="16096" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="192" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="464" r_length="272" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E322946" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACG-ATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</genome_strand>
        <mrna_strand>TGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAA-AACAGCAATCTGGTACTGGTTTCATGGAAAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTTAATATGACGAATGCA-CTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322514" ref_strand="+" ref_description="SGN-E322514 [cTOB-26-B23]">
      <seq>tgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16410" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="16096" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="193" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="465" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="475"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E322514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</genome_strand>
        <mrna_strand>TGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284894" ref_strand="+" ref_description="SGN-E284894 [cLER-19-L1]">
      <seq>cacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaaaagataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16192" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15892" g_stop="15814" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14896" g_stop="14625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="351" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E284894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15892" e_stop="15814"/>
          <exon e_start="14896" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</genome_strand>
        <mrna_strand>CACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395922" ref_strand="+" ref_description="SGN-E395922 [TUS-18-H15](-)">
      <seq>catggactagacataacttgtgttgctttgtctatagctataggttttccactgttgctgctgcaataagacaataatgacctcttatcaaagaaatctacactgtcacgttaattgtttcttcgttgtaatagactatgggagtatccttgttgatgctccattccactgtaagataagtagttaactgatctttcaaaacaatcacataattgtcatattaatcacacgtttaagttatcgcagtgccagtgaaccaattagacaatggacgtggtcttggctaccctaaattttcatagaatatagtggtggtctttcacatttcaacagctttgtgattttctgttttaggcgttccttctttcttgtagcctctcctcattttatttgagcttgctgtatttgttatttccggtgggggactaatcattggttgttatatttttgttttgcagtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctattttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="15654" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15354" g_stop="14625" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E395922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15354" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</genome_strand>
        <mrna_strand>CATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352593" ref_strand="+" ref_description="SGN-E352593 [cTOS-9-H2]">
      <seq>tgagttactacaatcaacaacaaccccctgttggtgtgccacctccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16446" stop="14329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16146" g_stop="16096" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="229" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14629" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="497" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E352593" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16146" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTT</genome_strand>
        <mrna_strand>TGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCTCCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711349" ref_strand="+" ref_description="SGN-E711349 [FB01DB01]">
      <seq>catatactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccaccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttgatggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgttgtccttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggttggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctattttatttttttttanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16499" stop="14328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16199" g_stop="16096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="282" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14631" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="547" r_length="265" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="576"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E711349" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16199" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTT</genome_strand>
        <mrna_strand>CATATACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCACCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGATGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTG-TTGTCCTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTTGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734663" ref_strand="+" ref_description="SGN-E734663 [LB13BA11]">
      <seq>cagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccaccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttgatggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgttgtccttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggttggagaattcaagtgtctatttgccagtttatacattattgtgcaatgcaagagattctattttatttttttttnnnnaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16499" stop="14328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16199" g_stop="16096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="282" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14631" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="547" r_length="265" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="600"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E734663" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16199" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTT</genome_strand>
        <mrna_strand>CAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCACCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGATGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTG-TTGTCCTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTTGGAGAATTCAAGTGTCTATTTGCCAGTTTATACATTATTGTGCAATGCAAGAGATTCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715110" ref_strand="+" ref_description="SGN-E715110 [FB13BE04]">
      <seq>cgaaatgcaccaacagaaactctctctacagttagatccaaccccaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccaccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttgatggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgttgtccttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggttggagaattcaagtgtctatttgccaatttatacattattgtgcaatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16510" stop="14340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16212" g_stop="16096" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="295" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14648" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="543" r_length="248" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="558"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E715110" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16212" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAAT</genome_strand>
        <mrna_strand>CGAAATGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCCAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCACCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGATGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTG-TTGTCCTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTTGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332439" ref_strand="+" ref_description="SGN-E332439 [cTOD-17-D17]">
      <seq>agaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16498" stop="14340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16198" g_stop="16096" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="281" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14648" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="530" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="543"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E332439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16198" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAAT</genome_strand>
        <mrna_strand>AGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379137" ref_strand="+" ref_description="SGN-E379137 [TUS-3-F4](-)">
      <seq>gctgaaatcgcgcccctatcatacttcagactggaagggggtgcatggactagacataacttgtgttgctttgtctatagctataggttttccactgttgctgctgcaataagacaataatgacctcttatcaaagaaatctacactgtcacgttaattgtttcttcgttgtaatagactatgggagtatccttgttgatgctccattccactgtaagataagtagttaactgatctttcaaaacaatcacataattgtcatattaatcacacgtttaagttatcgcagtgccagtgaaccaattagacaatggacgtggtcttggctaccctaaattttcatagaatatagtggtggtctttcacatttcaacagctttgtgattttctgttttaggcgttccttctttcttgtagcctctcctcattttatttgagcttgctgtatttgttatttccggtgggggactaatcattggttgttatatttttgttttgcagtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="15697" stop="14386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15397" g_stop="14686" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E379137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15397" e_stop="14686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATT</genome_strand>
        <mrna_strand>GCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734612" ref_strand="+" ref_description="SGN-E734612 [LB13AE08]">
      <seq>caaaagcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccaccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttgatggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgttgtccttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggttggagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16511" stop="14388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16211" g_stop="16096" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="294" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14689" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="501" r_length="207" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="516"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E734612" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16211" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGA</genome_strand>
        <mrna_strand>CAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCACCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGATGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTG-TTGTCCTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733911" ref_strand="+" ref_description="SGN-E733911 [LB11BB04]">
      <seq>aaaagcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccaccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttgatggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgttgtccttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggttggagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16510" stop="14388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16210" g_stop="16096" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="293" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14689" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="500" r_length="207" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="512"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E733911" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16210" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGA</genome_strand>
        <mrna_strand>AAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCACCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGATGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTG-TTGTCCTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712627" ref_strand="+" ref_description="SGN-E712627 [FB05BE05]">
      <seq>gcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccaccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttgatggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgttgtccttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggttggagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16506" stop="14388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16206" g_stop="16096" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="289" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14689" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="496" r_length="207" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="507"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E712627" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16206" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGA</genome_strand>
        <mrna_strand>GCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCACCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGATGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTG-TTGTCCTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308791" ref_strand="+" ref_description="SGN-E308791 [cLEZ-14-H17]">
      <seq>ttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16481" stop="14388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16181" g_stop="16096" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="264" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14689" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="472" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="493"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E308791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16181" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGA</genome_strand>
        <mrna_strand>TTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334969" ref_strand="+" ref_description="SGN-E334969 [cTOE-9-J23]">
      <seq>accccacagcagggtcaccctaacaaggttacccacctcaagggtaccctccacagtatgcaccctcagtatggtgctccacctcctcatcaaccaacaacagcaatctggtactgggtttcatggaagggatgtttggctgctcttgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtcttttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaaaaaaaaaaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16242" stop="14388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15944" g_stop="15814" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="0.87"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14896" g_stop="14689" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="344" r_length="210" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E334969" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15944" e_stop="15814"/>
          <exon e_start="14896" e_stop="14689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCA-CCTCAGTATGGTGCTCCACCTCCTCATCAA-CAACAACAGCAATCTGGTACT-GGTTTCATGGAA-GGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTC-TGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTC-TTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGA</genome_strand>
        <mrna_strand>ACCCCACAGCAGGGTCACCCT-AACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCCTCAGTATGGTGCTCCACCTCCTCATCAACCAACAACAGCAATCTGGTACTGGGTTTCATGGAAGGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280475" ref_strand="+" ref_description="SGN-E280475 [cLER-1-C15]">
      <seq>aaaagcaccaactgaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgactttggagtcctgtactgtccttgataaataatttgatattaaatatgacgatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16510" stop="14405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16210" g_stop="16096" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="293" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14705" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="485" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E280475" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16210" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACC</genome_strand>
        <mrna_strand>AAAAGCACCAACTGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGACTTTGGAGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370426" ref_strand="+" ref_description="SGN-E370426 [TUS-29-E9]">
      <seq>ccaccacaaggatatccgccagaaggatacccaaaagatgcatacccaccaccagggtacccacagtagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcaatatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16293" stop="14446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16105" g_stop="16096" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="188" r_length="178" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14746" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="339" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E370426" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16105" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACT</genome_strand>
        <mrna_strand>CCACCACAAG........................................................................................................GATATCCGCCAGAAGGATACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGTAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAATATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378501" ref_strand="+" ref_description="SGN-E378501 [TUS-18-H15]">
      <seq>acagaaactctctctacagttatatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatggtatgaaccttaaagactcaatttttatgttcatatgttatgattcagttacagtaatttgtatgattttgtttgagagagatctgtattgatattggttttttgtagagcggttgaggagattgtttatctgtcttgtctgttactatgtgtgtgtttcttgttgatttggtgtgtcttgtcaaaacatgatttctcgaattattattggtctgtttgatgtttactttgtgagcacttgtatttaataactatggttctggacgagttctggacgcgaactagaaggggtccttatcatttgtatgtctagttgaacattaacgcgagcaggagagacaattagaatgcctgaatgattctctatgtgcaaacatagtccaggccttgccacacctttgattttatctctgactgctgaaatcgcgcccctatcatacttcagactggaagggggtgcatggactagacataacttgtgttgctttgtctatagctatagggtttccactgttgctgctgcaaaaagacaataatgacctcttatcaaagaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16500" stop="14955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16200" g_stop="16096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15255" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="842" r_length="737" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E378501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16200" e_stop="16096"/>
          <exon e_start="15991" e_stop="15255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTA</genome_strand>
        <mrna_strand>ACAGAAACTCTCTCTACAGTTATATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGGTTTCCACTGTTGCTGCTGCAAAAAGACAATAATGACCTCTTATCAAAGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395923" ref_strand="+" ref_description="SGN-E395923 [TUS-18-H15]">
      <seq>aacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatggtatgaaccttaaagactcaatttttatgttcatatgttatgattcagttacagtaatttgtatgattttgtttgagagagatctgtattgatattggttttttgtagagcggttgaggagattgtttatctgtcttgtctgttactatgtgtgtgtttcttgttgatttggtgtgtcttgtcaaaacatgatttctcgaattattattggtctgtttgatgtttactttgtgagcacttgtatttaataactatggttctggacgagttctggacgcgaactagaaggggtccttatcatttgtatgtctagttgaacattaacgcgagcaggagagacaattagaatgcctgaatgattctctatgtgcaaacatagtccaggccttgccacacctttgattttatctctgactgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16501" stop="15092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16201" g_stop="16096" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15392" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="706" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E395923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16201" e_stop="16096"/>
          <exon e_start="15991" e_stop="15392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAA</genome_strand>
        <mrna_strand>AACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379929" ref_strand="+" ref_description="SGN-E379929 [TUS-3-F4]">
      <seq>acagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatggtatgaaccttaaagactcaatttttatgttcatatgttatgattcagttacagtaatttgtatgattttgtttgagagagatctgtattgatattggttttttgtagagcggttgaggagattgtttatctgtcttgtctgttactatgtgtgtgtttcttgttgatttggtgtgtcttgtcaaaacatgatttctcgaattattattggtctgtttgatgtttactttgtgagcacttgtatttaataactatggttctggacgagttctggacgcgaactagaaggggtccttatcatttgtatgtctagttgaacattaacgcgagcaggagagacaattagaatgcctgaatgattctctatgtgcaaacatagtccaggccttgccacacctttgattttatctctgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16500" stop="15097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16200" g_stop="16096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15397" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="700" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E379929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16200" e_stop="16096"/>
          <exon e_start="15991" e_stop="15397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTG</genome_strand>
        <mrna_strand>ACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210224" ref_strand="+" ref_description="SGN-E210224 [cLEC-40-P13]">
      <seq>acagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatggtatgaaccttaaagactcaatttttatgttcatatgttatgattcagttacagtaatttgtatgattttgtttgagagagatctgtattgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16500" stop="15418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16200" g_stop="16096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15718" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="379" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E210224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16200" e_stop="16096"/>
          <exon e_start="15991" e_stop="15718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATT</genome_strand>
        <mrna_strand>ACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549636" ref_strand="+" ref_description="SGN-E549636 [TUS-6-G19]">
      <seq>agatggtttacttgttgattcccgcaatggaaagacggtggcttcaatcgttggtcatttagactactcttttgcttgtgcgtggcatccagatgggcgtacatttgccactgggaatcaagataagacatgtcgaatttgggacttgagaaacttatcctcgtctacagccattctgaagggaaacatcggtgctgctcgatctatccgtttctcatccgatggacagttccttgttgtggctgaacctgcagattttgtccatatctacaataccaagtcagactacaagaaacgtcaggaaattgatctttttggtgagatatcaggggtatctctgagcccagacgacgaatctctttacattggtatctgggatcgaacatatggaagcttgctagaatacaacagaaggcatagttgtagatatcttgattcgttcgtgtaatcttcaacccaagggttctacagttcattcacattgagtcccaatattttgcacaaattcgtccccgattattttatatcagttcttgatcttggcattactatgtacagttacaccttgagattgaactttgtttctggttatatacaatctctctcatgtaccattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="22076" stop="20496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21776" g_stop="21743" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21742" i_stop="21382" i_length="361">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.121" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21381" g_stop="20796" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="620" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E549636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21776" e_stop="21743"/>
          <exon e_start="21381" e_stop="20796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAGGTATTATAATTTTTTTACCATTACCTTCTTTAGTCCGTTGTTTCACTCTGATAGTAGTATTGATCATTAAATTCAGAGGGAAATGAATACATTTAGCTCAGTTATTCTGAATCTACAGCAAAATCGGATTACGTTCAACTTTTTGATTATGTAACTACGGCCTGTCAGTTTTTTAAGTCTGAATCATGTTAGGTCAATATAGTTACTATATTTGTGGTGAGGCCATTATTTGGCAAAATTATTCCCAAGTTCATTTTCTTTTTCCTTCAAAGACGTCTCTCCATATTTTGGCTTTCGTATGAGTTTCCCATTTGCTGAACTTGCAAAATCTTATCTAAGGCAGCTTGTTTACTGTTAACAGACGGTAGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCATTACTATGTACAGTTACACCTTGAGATTGAACTTTGTTTCTGGTTATATACAATCTCTCTCATGTACCATTTTGC</genome_strand>
        <mrna_strand>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACGGTGGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCATTACTATGTACAGTTACACCTTGAGATTGAACTTTGTTTCTGGTTATATACAATCTCTCTCATGTACCATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549702" ref_strand="+" ref_description="SGN-E549702 [TUS-6-G19](-)">
      <seq>agatggtttacttgttgattcccgcaatggaaagacggtggcttcaatcgttggtcatttagactactcttttgcttgtgcgtggcatccagatgggcgtacatttgccactgggaatcaagataagacatgtcgaatttgggacttgagaaacttatcctcgtctacagccattctgaagggaaacatcggtgctgctcgatctatccgtttctcatccgatggacagttccttgttgtggctgaacctgcagattttgtccatatctacaataccaagtcagactacaagaaacgtcaggaaattgatctttttggtgagatatcaggggtatctctgagcccagacgacgaatctctttacattggtatctgggatcgaacatatggaagcttgctagaatacaacagaaggcatagttgtagatatcttgattcgttcgtgtaatcttcaacccaagggttctacagttcattcacattgagtcccaatattttgcacaaattcgtccccgattattttatatcagttcttgatcttggcgtaactatgtacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="22076" stop="20558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21776" g_stop="21743" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21742" i_stop="21382" i_length="361">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.121" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21381" g_stop="20858" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="558" r_length="524" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E549702" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21776" e_stop="21743"/>
          <exon e_start="21381" e_stop="20858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAGGTATTATAATTTTTTTACCATTACCTTCTTTAGTCCGTTGTTTCACTCTGATAGTAGTATTGATCATTAAATTCAGAGGGAAATGAATACATTTAGCTCAGTTATTCTGAATCTACAGCAAAATCGGATTACGTTCAACTTTTTGATTATGTAACTACGGCCTGTCAGTTTTTTAAGTCTGAATCATGTTAGGTCAATATAGTTACTATATTTGTGGTGAGGCCATTATTTGGCAAAATTATTCCCAAGTTCATTTTCTTTTTCCTTCAAAGACGTCTCTCCATATTTTGGCTTTCGTATGAGTTTCCCATTTGCTGAACTTGCAAAATCTTATCTAAGGCAGCTTGTTTACTGTTAACAGACGGTAGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCATTACTATGTACAG</genome_strand>
        <mrna_strand>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACGGTGGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCGTAACTATGTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243716" ref_strand="+" ref_description="SGN-E243716 [cLED-35-A2]">
      <seq>gatggtttacttgttgattcccgcaatggaaagacggtggcttcaatcgttggtcattgagactactcttttgcttgtgcgtggcatccagatgggcgtacatttgccactgggaatcaagataagacatgtcgaatttgggacttgagaaacttatcctcgtctacagccattctgaagggaaacatcggtgctgctcgatctatccgtttctcatccgatggacagttccttgttgtggctgaacctgcagattttgtccatatctacaataccaagtcagactacaagaaacgtcaggaaattgatctttttggtgagatatcaggggtatctctgagcccagacgacgaatctctttacattggtatctgggatcgaacatatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="22075" stop="20723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21775" g_stop="21743" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21742" i_stop="21382" i_length="361">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.121" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21381" g_stop="21023" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="392" r_length="359" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E243716" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21775" e_stop="21743"/>
          <exon e_start="21381" e_stop="21023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTTACTTGTTGATTCCCGCAATGGAAAGGTATTATAATTTTTTTACCATTACCTTCTTTAGTCCGTTGTTTCACTCTGATAGTAGTATTGATCATTAAATTCAGAGGGAAATGAATACATTTAGCTCAGTTATTCTGAATCTACAGCAAAATCGGATTACGTTCAACTTTTTGATTATGTAACTACGGCCTGTCAGTTTTTTAAGTCTGAATCATGTTAGGTCAATATAGTTACTATATTTGTGGTGAGGCCATTATTTGGCAAAATTATTCCCAAGTTCATTTTCTTTTTCCTTCAAAGACGTCTCTCCATATTTTGGCTTTCGTATGAGTTTCCCATTTGCTGAACTTGCAAAATCTTATCTAAGGCAGCTTGTTTACTGTTAACAGACGGTAGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAG</genome_strand>
        <mrna_strand>GATGGTTTACTTGTTGATTCCCGCAATGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACGGTGGCTTCAATCGTTGGTCATTGAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254533" ref_strand="+" ref_description="SGN-E254533 [cLEG-29-K20]">
      <seq>tagaggaccaatttatggggggttgaatatttgagatttggcagtgccatagagatttgcaatgagtacaattgctgtggctgatggtgcaacttcttatatagtagattgccaacatgattgccttttttgctctgacattctggaatacccctgagatactcttttatgctcaatttcatgttcatattcttaacttgtatgctgctcatggttgtatttgttgatctactatttaacttcggaacttgtttctagcgagcaattattttgtcgtgcttcaatgggttattgaagttttttcatttgcttgaagtcagtcatcatcaacgcacatagtggtatgttgttgttgtagtagtttttgtacttcatataagtagttacaacacttttggatctatatttcctcttatttgaagttgagatcaatcatcaacgagctgcctctctctggacttcatttctcttttaagatttataagccaacatcatatgttgattcaatcaaccaggtattcatatcataaatagaaagcttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="23144" stop="21993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22844" g_stop="22293" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E254533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22844" e_stop="22293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGTTGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGTTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGTTGTTGTTGTAGTAGTTTTTGTACTTCATATAAGTAGTTACAACACTTTTGGATCTATATTTCCTCTTATTTGAAGTTGAGATCAATCATCAACGAGCTGCCTCTCTCTGGACTTCATTTCTCTTTTAAGATTTATAAGCCAACATCATATGTTGATTCAATCAACCAGGTATTCATATCATAAATAGAAAGCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>TAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGTTGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGTTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGTTGTTGTTGTAGTAGTTTTTGTACTTCATATAAGTAGTTACAACACTTTTGGATCTATATTTCCTCTTATTTGAAGTTGAGATCAATCATCAACGAGCTGCCTCTCTCTGGACTTCATTTCTCTTTTAAGATTTATAAGCCAACATCATATGTTGATTCAATCAACCAGGTATTCATATCATAAATAGAAAGCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261091" ref_strand="+" ref_description="SGN-E261091 [cLEG-65-A8]">
      <seq>tagaggaccaatttatggggggttgaatatttgagatttggcagtgccataaagatttgcaatgagtacaattgctgtggctgatggtgcaacttcttatatactagattgccaacatgattgccttttttgctctgacattctggaatacccctgagatactcttttatgctcaatttcatgttcatattcttaacttgtatgctgctcatggatgtatttgttgatctactatttaacttcggaacttgtttctagcgagcaattattttgtcgtgcttcaatgggttattgaagntttttcatttgcttgaagtcagtcatcatcaacgcacatagtggtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="23144" stop="22198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22844" g_stop="22498" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E261091" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22844" e_stop="22498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGTTGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGTTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGT</genome_strand>
        <mrna_strand>TAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAAAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATACTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGATGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGNTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332286" ref_strand="+" ref_description="SGN-E332286 [cTOD-17-B23]">
      <seq>ttcagtttaactttctgcatactgttcactaagctctcaaaccatcttgaattcctctctttccaaatagcccaccatataacacttctttgctttttttgatttcctatcattagttactgagtagttttggttgtccgtgaagtataatatacttgctttttcatacaagagaactggcaggttgtggagaagttccaaactggtcattgtcattattctcctcctcatcatcaacattctcatgtattgggtgttagtgggatagaatggtttcatgaatttctagtgtaagttctttctttaatcaaatgaaattctaatatgaggctttagatggactgtagttttctgatttaaattgaggctggaagtggttatttaataattctttcttgtacgaccttgtattatgacatcccaacaaggggcttttagtatctgagtgacctcaatgggttttatacattcaggttgagtttggtggtagattagataggctagatgaaggccaagcgtttgaagataaatcccatcattctcatttgtttcatcttagaggaccaatttatggggggttgaatatttgagatttggcagtgccatagagatttgcaatgagtacaattgctgtggctgatggtgcaacttcttatatagtagattgccacatgattgccttttttgctctgacattctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="23700" stop="22397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23400" g_stop="22697" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E332286" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23400" e_stop="22697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTTAACTTTCTGCATACTGTTCACTAAGCTCTCAAACCATCTTGAATTCCTCTCTTTCCAAATAGCCCACCATATAACACTTCTTTGCTTTTTTTGATTTCCTATCATTAGTTACTGAGTAGTTTTGGTTGTCCGTGAAGTATAATATACTTGCTTTTTCATACAAGAGAACTGGCAGGTTGTGGAGAAGTTCCAAACTGGTCATTGTCATTATTCTCCTCCTCATCATCAACATTCTCATGTATTGGGTGTTAGTGGGATAGAATGGTTTCATGAATTTCTAGTGTAAGTTCTTTCTTTAATCAAATGAAATTCTAATATGAGGCTTTAGATGGACTGTAGTTTTCTGATTTAAATTGAGGCTGGAAGTGGTTATTTAATAATTCTTTCTTGTACGACCTTGTATTATGACATCCCAACAAGGGGCTTTTAGTATCTGAGTGACCTCAATGGGTTTTATACATTCAGGTTGAGTTTGGTGGTAGATTAGATAGGCTAGATGAAGGCCAAGCGTTTGAAGATAAATCCCATCATTCTCATTTGTTTCATCTTAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAA</genome_strand>
        <mrna_strand>TTCAGTTTAACTTTCTGCATACTGTTCACTAAGCTCTCAAACCATCTTGAATTCCTCTCTTTCCAAATAGCCCACCATATAACACTTCTTTGCTTTTTTTGATTTCCTATCATTAGTTACTGAGTAGTTTTGGTTGTCCGTGAAGTATAATATACTTGCTTTTTCATACAAGAGAACTGGCAGGTTGTGGAGAAGTTCCAAACTGGTCATTGTCATTATTCTCCTCCTCATCATCAACATTCTCATGTATTGGGTGTTAGTGGGATAGAATGGTTTCATGAATTTCTAGTGTAAGTTCTTTCTTTAATCAAATGAAATTCTAATATGAGGCTTTAGATGGACTGTAGTTTTCTGATTTAAATTGAGGCTGGAAGTGGTTATTTAATAATTCTTTCTTGTACGACCTTGTATTATGACATCCCAACAAGGGGCTTTTAGTATCTGAGTGACCTCAATGGGTTTTATACATTCAGGTTGAGTTTGGTGGTAGATTAGATAGGCTAGATGAAGGCCAAGCGTTTGAAGATAAATCCCATCATTCTCATTTGTTTCATCTTAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCC-ACATGATTGCCTTTTTTGCTCTGACATTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718664" ref_strand="+" ref_description="SGN-E718664 [FC05BE12]">
      <seq>gctctcaatctcttcctctgtcaaccgtagccatgcctcagggagattacatagagctgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="31363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27304" g_stop="27339" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="155" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="223" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="332" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="401" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="459" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="695" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="747" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="31063" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="907" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E718664" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27304" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAATCTCTTTCTCTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGT</genome_strand>
        <mrna_strand>GCTCTCAATCTCTTCCTCTGT-CAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGCTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721641" ref_strand="+" ref_description="SGN-E721641 [FC14CH11]">
      <seq>gctctcaatctcttcccctgaccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="31257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27304" g_stop="27339" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="156" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="224" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="333" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="402" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="460" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="696" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="748" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="30957" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="802" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E721641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27304" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAATCTCTTTCTCTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAG</genome_strand>
        <mrna_strand>GCTCTCAATCTCTTCCCCTGACCAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720780" ref_strand="+" ref_description="SGN-E720780 [FC11DD01]">
      <seq>gggcgattggcggccaatcggccgaattgctctcaatctctttctctgtccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtacttttttacagagaagaaactgtaccctttttgtttgtgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27003" stop="31316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27305" g_stop="27339" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="64" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="184" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="252" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="361" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="430" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="488" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="724" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="776" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="31016" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="889" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E720780" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27305" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAATCTCTTTCTCTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATC</genome_strand>
        <mrna_strand>CTCTCAATCTCTTTCTCTGTCCAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTTACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717504" ref_strand="+" ref_description="SGN-E717504 [FC01BG03]">
      <seq>gggcgattggcggccaatcggccgaattgctctcaatctctttctctgtcaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27003" stop="31282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27305" g_stop="27339" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="63" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="183" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="251" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="360" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="429" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="487" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="723" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="775" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="30982" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="854" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E717504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27305" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAATCTCTTTCTCTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAAC</genome_strand>
        <mrna_strand>CTCTCAATCTCTTTCTCTGT-CAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728882" ref_strand="+" ref_description="SGN-E728882 [LA19BA12]">
      <seq>ctttctctgtccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27015" stop="30912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27315" g_stop="27339" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="145" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="213" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="322" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="391" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="449" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30612" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="623" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E728882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27315" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGA</genome_strand>
        <mrna_strand>CTTTCTCTGTCCAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342667" ref_strand="+" ref_description="SGN-E342667 [cTOF-7-P1]">
      <seq>tctgtccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaactttaatgtacgttcaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27020" stop="30894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27320" g_stop="27339" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="140" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="208" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="317" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="386" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="444" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30594" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="600" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E342667" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27320" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTG</genome_strand>
        <mrna_strand>TCTGTCCAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTTAATGTACGTTCAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247519" ref_strand="+" ref_description="SGN-E247519 [cLEF-42-O19]">
      <seq>tctgtccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27020" stop="30782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27320" g_stop="27339" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="140" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="208" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="317" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="386" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="444" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30482" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="488" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E247519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27320" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGA</genome_strand>
        <mrna_strand>TCTGTCCAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697562" ref_strand="+" ref_description="SGN-E697562 [FA03BF05]">
      <seq>cggtttaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgatatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcactctagagatcattgcggtgaagaagaatcctaatggtccaatgtacacttctctacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27321" g_stop="27339" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="139" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="207" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="316" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="385" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="443" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30648" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="653" r_length="210" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E697562" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27321" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTG</genome_strand>
        <mrna_strand>CGGTTTAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGATATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCACTCTAGAGATCATTGCGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700854" ref_strand="+" ref_description="SGN-E700854 [FA14BD09]">
      <seq>gtccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtacttttttacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27023" stop="31362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27323" g_stop="27339" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="137" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="205" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="314" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="383" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="441" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="677" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="729" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="31062" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="888" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E700854" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27323" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGG</genome_strand>
        <mrna_strand>GTCCAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTTACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702015" ref_strand="+" ref_description="SGN-E702015 [FA17CC09]">
      <seq>ccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="31360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27325" g_stop="27339" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="135" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="203" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="312" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="381" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="439" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="675" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="727" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="31060" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="884" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E702015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27325" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCT</genome_strand>
        <mrna_strand>CCAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231700" ref_strand="+" ref_description="SGN-E231700 [cLED-4-D17]">
      <seq>caaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggtacgaaagccacctttgtcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27326" g_stop="27339" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="134" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="202" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="311" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="380" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="438" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30483" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="482" r_length="44" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E231700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27326" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAG</genome_strand>
        <mrna_strand>CAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGG-TACGAAAGCCACCTTTGTCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310685" ref_strand="+" ref_description="SGN-E310685 [cLEZ-15-A11]">
      <seq>caaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagctaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27326" g_stop="27339" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="134" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="202" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="311" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="380" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="438" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30482" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="482" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E310685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27326" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGA</genome_strand>
        <mrna_strand>CAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCTAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227018" ref_strand="+" ref_description="SGN-E227018 [cLED-1-H6]">
      <seq>caaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtgaacgtaagaaggatgctcgtgaagttcacaatcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcatagtgataagatctggcaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27326" g_stop="27339" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="134" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="202" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="311" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="380" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30273" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="435" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E227018" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27326" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGA</genome_strand>
        <mrna_strand>CAACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTGAACGTAAGAAGGATGCTCGTGAAGTTCACAATCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCATAGTGATAAGATCTGGCAAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240289" ref_strand="+" ref_description="SGN-E240289 [cLED-25-N6]">
      <seq>accgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27328" g_stop="27339" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="132" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="200" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="309" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29745" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="361" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E240289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27328" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGG</genome_strand>
        <mrna_strand>ACCGTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334714" ref_strand="+" ref_description="SGN-E334714 [cTOD-23-N10]">
      <seq>ccgtatccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgacagccacctttgtcggagcagggtttaccaggaaacctcccaagtatgagcggttcatccgcccgtctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27329" g_stop="27339" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="131" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="199" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="308" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="377" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="435" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30536" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="533" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E334714" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27329" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGA</genome_strand>
        <mrna_strand>CCGTATCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGACAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCCAAGTATGAGCGGTTCATCCGCCCGTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712197" ref_strand="+" ref_description="SGN-E712197 [FB04AG03]">
      <seq>gtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="31416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27331" g_stop="27339" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="129" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="197" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="306" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="433" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="669" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="721" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="31116" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="934" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="935" polyA_stop="948"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E712197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27331" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAA</genome_strand>
        <mrna_strand>GTAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286028" ref_strand="+" ref_description="SGN-E286028 [cLES-13-P22]">
      <seq>gtagccatgccttagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27331" g_stop="27339" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="129" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="197" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="306" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="433" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30497" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="492" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E286028" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27331" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGG</genome_strand>
        <mrna_strand>GTAGCCATG............................................................................................................................................CCTTAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261337" ref_strand="+" ref_description="SGN-E261337 [cLEG-57-E21]">
      <seq>tagccatgcctcagggagattacatacagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaacaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaaaagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaacattcttaacaacactataaagcgaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttacgcctgtggctgatgatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggcttactagagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattgaggtgaagaagaatcctaatggaccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggataatgtcagcgaacttggtcttgtcactcctgctgagcaagttgtatggagtagatatgctgcagtgacgaataatcctgaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="31240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27332" g_stop="27339" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="128" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="196" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="305" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="374" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="432" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="668" r_length="236" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="720" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30904" g_stop="30940" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="757" r_length="37" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E261337" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27332" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGA</genome_strand>
        <mrna_strand>TAGCCATG............................................................................................................................................CCTCAGGGAGATTACATACAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAACAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAAAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAC...........................................................................................................ATTCTTAACAACACTATAAAGCGAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGCCTGTGGCTGATGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGCTTACTAGAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGAGGTGAAGAAGAATCCTAATGGACCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GATAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGAGCAAGTTGTATGGA...............................................................................................GTAGATATGCTGCAGTGACGAATAATCCTGAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260345" ref_strand="+" ref_description="SGN-E260345 [cLEG-53-F7]">
      <seq>tagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaagcctgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27332" g_stop="27339" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="128" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="196" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="305" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="374" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E260345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27332" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG</genome_strand>
        <mrna_strand>TAGCCATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313782" ref_strand="+" ref_description="SGN-E313782 [cTOA-17-F8]">
      <seq>ccatgccttatggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27335" g_stop="27339" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="125" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="302" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="371" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="429" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30600" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="591" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E313782" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27335" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCA</genome_strand>
        <mrna_strand>CCATG............................................................................................................................................CCTTATGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348857" ref_strand="+" ref_description="SGN-E348857 [cTOF-29-H6]">
      <seq>catgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctcttaggtgttataaccaagggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27177" stop="30965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27336" g_stop="27339" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="124" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="192" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="301" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="370" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="428" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30439" g_stop="30665" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="656" r_length="228" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E348857" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27336" e_stop="27339"/>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTTAGTTCTCTAAGCCGTACAACAAATTCAACTTCATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTC-TAGGTGTTATAACCAAGGGAACC</genome_strand>
        <mrna_strand>CATG............................................................................................................................................CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTTAGGTGTTATAACCAAGGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738928" ref_strand="+" ref_description="SGN-E738928 [LC15BH10]">
      <seq>catgaatcttatgtttttccaagtttttacgattatcttaagcattattatatactgatgatttttaaatgtttttctttgtgatgtgaaaattggcaaacaacagcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctggggaaagtgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27074" stop="31257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27374" g_stop="27599" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="294" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="403" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="472" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="530" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="766" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="818" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30904" g_stop="30957" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="872" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E738928" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27374" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAG</genome_strand>
        <mrna_strand>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGGAAAGTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736151" ref_strand="+" ref_description="SGN-E736151 [LC04CB11]">
      <seq>catgaatcttatgtttttccaagtttttacgattatcttaagcattattatatactgatgatttttaaatgtttttctttgtgatgtgaaaattggcaaacaacagcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaaagtgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27074" stop="31256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27374" g_stop="27599" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="294" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="403" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="472" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="530" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="766" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="818" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30904" g_stop="30956" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="871" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E736151" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27374" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCA</genome_strand>
        <mrna_strand>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAAGTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704509" ref_strand="+" ref_description="SGN-E704509 [FA24CA03]">
      <seq>gcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtacccttttttgttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27179" stop="31358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27479" g_stop="27599" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="189" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="298" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="367" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="425" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="661" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="713" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30904" g_stop="31058" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="868" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E704509" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27479" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATG</genome_strand>
        <mrna_strand>GCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTTGTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280833" ref_strand="-" ref_description="SGN-E280833 [cLEL-6-F24](-)">
      <seq>gcacgagcatgcctcagggagatttcatagagttgcacaggaagagatgggggcgttgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27173" stop="29882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27480" g_stop="27599" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="131" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="199" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29582" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="304" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E280833" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280833" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27480" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGC</genome_strand>
        <mrna_strand>CCTCAGGGAGATTTCATAGAGTTGCACAGGAAGAGATGGGGGCGTTGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224898" ref_strand="+" ref_description="SGN-E224898 [cLEL-27-I7](-)">
      <seq>ggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactacctcaagagctaagattcttagcaacacaaccaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27186" stop="30032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27486" g_stop="27599" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="182" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="291" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="330" r_length="39" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E224898" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27486" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAA</genome_strand>
        <mrna_strand>GGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCTCAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAACCAAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224398" ref_strand="+" ref_description="SGN-E224398 [cLEL-27-I7](-)">
      <seq>ggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacccaataaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27186" stop="85867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27486" g_stop="27599" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="182" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="291" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="330" r_length="39" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E224398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27486" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAA</genome_strand>
        <mrna_strand>GGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACCCAATAAAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344349" ref_strand="+" ref_description="SGN-E344349 [cTOF-16-B2]">
      <seq>agttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatncattgggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27199" stop="31097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27499" g_stop="27599" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="169" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="278" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="347" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="405" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="641" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30757" g_stop="30797" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="682" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E344349" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27499" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGAT-CATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAA</genome_strand>
        <mrna_strand>AGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATNCATT-GGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287318" ref_strand="+" ref_description="SGN-E287318 [cLES-15-D11]">
      <seq>agttgcccaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27199" stop="30563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27499" g_stop="27599" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="169" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="278" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="347" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30263" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="392" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E287318" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27499" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCT</genome_strand>
        <mrna_strand>AGTTGCCCAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337522" ref_strand="+" ref_description="SGN-E337522 [cTOE-11-J8]">
      <seq>ttgcacaggatgagatttgtgcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27201" stop="30884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27501" g_stop="27599" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="167" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="276" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="345" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="403" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30584" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="549" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E337522" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27501" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACG</genome_strand>
        <mrna_strand>TTGCACAGGATGAGATTTGTGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254035" ref_strand="+" ref_description="SGN-E254035 [cLEG-34-G20]">
      <seq>agagatttgggcgtggccctggtcactttgagcgtgaacgtgagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcattatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacacgagctaagattcttagcaacacaatatagcaaaagaggaaagagagagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27211" stop="30813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27511" g_stop="27599" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="157" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="266" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="335" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="393" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30513" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="468" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E254035" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27511" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATG</genome_strand>
        <mrna_strand>AGAGATTTGGGCGTGGCCCTGGTCACTTTGAGCGTGAACGTGAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATTATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACACGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATATAGCAAAAGAGGAAAGAGAGAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719343" ref_strand="+" ref_description="SGN-E719343 [FC07CC05]">
      <seq>gagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcatagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27212" stop="31263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27512" g_stop="27599" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="156" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="265" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="334" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="392" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="628" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="680" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30904" g_stop="30963" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="740" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E719343" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27512" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCC</genome_strand>
        <mrna_strand>GAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCATAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286597" ref_strand="+" ref_description="SGN-E286597 [cLES-12-C10]">
      <seq>aagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27449" stop="30785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27749" g_stop="27783" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="144" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="213" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="271" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30439" g_stop="30485" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="318" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E286597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27749" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCA</genome_strand>
        <mrna_strand>AAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711740" ref_strand="+" ref_description="SGN-E711740 [FB02DD05]">
      <seq>cggtataaggagtcatcatcccggcgcaaggttgatgatgatctgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcttaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="29187" stop="31494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29485" g_stop="29586" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="171" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="229" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="465" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="517" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30904" g_stop="31196" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="810" r_length="293" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E711740" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29485" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGC</genome_strand>
        <mrna_strand>CGGTATAAGGAGTCATCATCCCGGCGCAAGGTTGATGATGATCTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCTTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299285" ref_strand="+" ref_description="SGN-E299285 [cLET-43-H11]">
      <seq>gatgatgatgtgcatgagggtgctgttcctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacagtaaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggcttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="29218" stop="30939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29518" g_stop="29586" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="138" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="196" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30439" g_stop="30639" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="397" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E299285" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29518" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTT</genome_strand>
        <mrna_strand>GATGATGATGTGCATGAGGGTGCTGTTCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAGTAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGCTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289913" ref_strand="+" ref_description="SGN-E289913 [cLET-9-K24]">
      <seq>gaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="29437" stop="31282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29737" g_stop="29762" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="84" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="320" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="372" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30904" g_stop="30982" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="451" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E289913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29737" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAAC</genome_strand>
        <mrna_strand>GAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232093" ref_strand="+" ref_description="SGN-E232093 [cLED-7-P7]">
      <seq>tgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagatctcctagtgtagtactttttaacagagaagaaactgcaccctgtttgcttgtgaatcgagtgcataattttgtgtatcgcttaggtacactgcttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="29912" stop="31360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30210" g_stop="30276" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="302" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="354" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30904" g_stop="31060" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="511" r_length="157" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E232093" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30210" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCT</genome_strand>
        <mrna_strand>TGCCCA-AGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGATCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGCACCCTGTTTGCTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTAGGTACACTGCTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277336" ref_strand="+" ref_description="SGN-E277336 [cLER-3-E5]">
      <seq>gaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="29934" stop="31371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30234" g_stop="30276" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="279" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="331" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30904" g_stop="31071" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="499" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E277336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30234" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAG</genome_strand>
        <mrna_strand>GAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242534" ref_strand="+" ref_description="SGN-E242534 [cLED-30-O22]">
      <seq>caaaaggaagaccaagcagtggaagagaatggtttctaaagccacctttgtcggagcagggtttaccaggaaacctgcaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattgaggtgaagaagaatcctaatggtccaatgtacacttctgtaggtgtcataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtcaatatgctcaagtgacgaataatcctgaaaatgatgggtgcatcaatgcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30135" stop="31260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30266" g_stop="30276" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.875" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="247" r_length="236" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="299" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30904" g_stop="30960" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="356" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E242534" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30266" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="30960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTC</genome_strand>
        <mrna_strand>CAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTTCTAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTGCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGAGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTGTAGGTGTCATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTCAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGGTGCATCAATGCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222529" ref_strand="+" ref_description="SGN-E222529 [cLEL-16-G21](-)">
      <seq>ttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcattccccaggaaaaattaagttattcatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30292" stop="31540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30592" g_stop="30674" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="135" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30904" g_stop="31252" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="484" r_length="349" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E222529" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30592" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACC</genome_strand>
        <mrna_strand>TTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTCCCCAGGAAAAATTAAGTTATTCATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230604" ref_strand="+" ref_description="SGN-E230604 [cLEL-35-F18](-)">
      <seq>cctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcatttaccaggaaaaattaagttattcatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30318" stop="31540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30618" g_stop="30674" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="109" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30904" g_stop="31252" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="458" r_length="349" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E230604" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30618" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACC</genome_strand>
        <mrna_strand>CCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283473" ref_strand="-" ref_description="SGN-E283473 [cLER-12-F16]">
      <seq>accaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtacttttaacaaagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacaaagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactggaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcatttaccaggaaaaattaagttattcatcagaaatgtcccaaaacctttttattggtataatcattaaatccttaagctggaaaaagaaaaataagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30354" stop="31594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30654" g_stop="30674" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="73" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30904" g_stop="31286" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="455" r_length="382" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="467"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E283473" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283473" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30654" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTG</genome_strand>
        <mrna_strand>ACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTAC-TTTTAACAAAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAAAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGGACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGGTATAATCATTAAATCCTTAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339991" ref_strand="+" ref_description="SGN-E339991 [cTOF-3-K11]">
      <seq>ttgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30455" stop="31470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30670" g_stop="30674" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="57" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30904" g_stop="31169" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="323" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="334"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E339991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30670" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTT</genome_strand>
        <mrna_strand>TTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222452" ref_strand="+" ref_description="SGN-E222452 [cLEL-16-G21](-)">
      <seq>aggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaacctgtaaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcatttaccaggaaaaattaagttattcatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30455" stop="31540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30755" g_stop="30808" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30904" g_stop="31252" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="405" r_length="351" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E222452" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30755" e_stop="30808"/>
          <exon e_start="30904" e_stop="31252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAA-CTGT-ACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACC</genome_strand>
        <mrna_strand>AGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACCTGTAACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229782" ref_strand="+" ref_description="SGN-E229782 [cLEL-4-P21](-)">
      <seq>gaaaagttgtatggggtaaatatgctcaagtgcggaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcatttaccaggaaaaattaagttattcatcagaaatgtcccaaaacctttttattgctataatcattaaatccttaagctgatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30494" stop="31594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30794" g_stop="30808" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30904" g_stop="31293" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="405" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="417"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E229782" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30794" e_stop="30808"/>
          <exon e_start="30904" e_stop="31293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCAACA</genome_strand>
        <mrna_strand>GAAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGCGGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216359" ref_strand="+" ref_description="SGN-E216359 [cLEL-13-G19](-)">
      <seq>gggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtacccattttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggacaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcatttaccaggaaaaattaagttattcatccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30603" stop="31540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30807" g_stop="30808" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30904" g_stop="31239" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="338" r_length="336" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="355"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E216359" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30807" e_stop="30808"/>
          <exon e_start="30904" e_stop="31239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAA</genome_strand>
        <mrna_strand>GG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCATTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGACAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229438" ref_strand="+" ref_description="SGN-E229438 [cLEL-4-P21](-)">
      <seq>taccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcatttaccaggaaaaattaagttattcatcagaaatgtcccaaagcctttttattgctataatcattaaatccttaagctgatcagaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="30696" stop="31590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30996" g_stop="31290" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="310"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E229438" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30996" e_stop="31290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCA</genome_strand>
        <mrna_strand>TACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAGCCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374804" ref_strand="+" ref_description="SGN-E374804 [TUS-14-L16](-)">
      <seq>atcatcaaatcatttcagcagtcctttcaattgctccacttctgattcaagtccatttagtgatcctttaaccgaatttatggaggctgttccatcttctgaaaataaatcatcattgagtattccagagttgtatttacctggtcttgttattcatattgtgccacagaaggatggtcttcataaaccattgtggaagctctggaaaagttgggagagaagatgcaggttcagggcgtatgtagcgaaaagagaagcattcaaagatataatagtatcaccatacatgttcctggaccatctaccttggagatgtcagactgcacttgaaaacatactcaagactggacaacttaaaactccagatgatgcatctgaaattgtgtgattcctacacaagcagtgggctttaggcaccaaaaattcagttaccaaaacatgacatatacgtacataaaagagacaaccacatctgatcaaggccatgtaagatgttattaattatgagagtacaagaaacaaaataccccaagtagagtgttaaaaaagttatgtatttattgttactattgattaaaattttcttaatagtttgttgctcatctcttactaattattatgcacatactttatcagtgatgtatgccctctgttagttttaatattattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="50034" stop="48686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49734" g_stop="49423" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49422" i_stop="49346" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49345" g_stop="48985" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="673" r_length="361" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48984" i_stop="48912" i_length="73">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.398" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48911" g_stop="48905" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="680" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E374804" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49734" e_stop="49423"/>
          <exon e_start="49345" e_stop="48985"/>
          <exon e_start="48911" e_stop="48905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTACCTTGGAGGTATTTGAATTAGCAGATTCTTTTATATTTTTTTCAATGATTTTCCGTAGACGTAATACTATCATCTACTTCTTCAGATGTCAGACTGCACTTGAAAACATACTCAAGACTGGACAACTTAAAACTCCAGATGATGCATCTGAAATTGTGTGATTCCTACACAAGCAGTGGGCTTTAGGCACCAAAAATTCAGTTACCAAAACATGACATATACGTACATAAAAGAGACAACCACATCTGATCAAGGCCATGTAAGATGTTATTAATTATGAGAGTACAAGAAACAAAATACCCCAAGTAGAGTGTTAAAAAAGTTATGTATTTATTGTTACTATTGATTAAAATTTTCTTAATAGTTTGTTGCTCATCTCTTACTAATTATTATGCACATACTTTATCAGTGATGTATGCCCTCTGTTAGTTTTAATATTATTATATGTTCGACGTGTCATTTAGATTTCAGATTGATTATTGTATTTGTTACATTTTTCATATGCTTGATTGATATTAGGCAAAAA</genome_strand>
        <mrna_strand>ATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTACCTTGGAG.............................................................................ATGTCAGACTGCACTTGAAAACATACTCAAGACTGGACAACTTAAAACTCCAGATGATGCATCTGAAATTGTGTGATTCCTACACAAGCAGTGGGCTTTAGGCACCAAAAATTCAGTTACCAAAACATGACATATACGTACATAAAAGAGACAACCACATCTGATCAAGGCCATGTAAGATGTTATTAATTATGAGAGTACAAGAAACAAAATACCCCAAGTAGAGTGTTAAAAAAGTTATGTATTTATTGTTACTATTGATTAAAATTTTCTTAATAGTTTGTTGCTCATCTCTTACTAATTATTATGCACATACTTTATCAGTGATGTATGCCCTCTGTTAGTTTTAATATTATTATAA.........................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709869" ref_strand="+" ref_description="SGN-E709869 [FA53CA07]">
      <seq>cgatcaggggcttgnnncgntgnnnggagnaggatgngaccctttgggatatggtgtgcgaatagtagggcattcccttggaggagcgattgctgcagtattgggaatgaagctacgcaaacggtacccagatttacatgtatacacatatggtgctctcccatgtgtgggtctggtggtagcagatgcttgttctgaattcattaccagcattgtaaacaatgatgaattttcagcgcgcctttcagtagcatcaattatgagacttcaagcagctgcacttaaggcattgtcagaagatggcactattgatattacaacaattcttaaacttgctcagcactttacttcattgaccgtctgtcagaaaagcatgaacgacggagaatcgtcagtgaattctttgacagcaatgtcaagttgtacaaaccaaatcaaccatggccaacttgaaaatggattggcaaagcgtgaagcaggatcctctgttttgcatgacatagataccgattttaggtgtgctgatgaaatcgtttcaactgaatcatcaaatcatttcagcagtcctttcaattgctccacttctgattcaagtccatttagtgatcctttaaccgaatttatggaggctgttccatcttctgaaaataaatcatcattgagtattccagagttgtatttacctggtcttgttattcatattgtgccacagaaggatggtcttcataaaccattgtggaagctctggaaaagttgggagagaagatgcaggttcagggcgtatgtagcgaaaagagaagcattcaaagatataatagtatcaccatacatgttcctggaccatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="51393" stop="49130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51136" g_stop="51027" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="112" r_length="110" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51026" i_stop="50394" i_length="633">
            <donor d_prob="0.897" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50393" g_stop="50296" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="210" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50295" i_stop="50204" i_length="92">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50203" g_stop="49956" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="458" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49955" i_stop="49820" i_length="136">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49819" g_stop="49430" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="848" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E709869" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51136" e_stop="51027"/>
          <exon e_start="50393" e_stop="50296"/>
          <exon e_start="50203" e_stop="49956"/>
          <exon e_start="49819" e_stop="49430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATTTCTTGCCTCGTTGCTCGGAGTAGGATGTGAGTGTGAGGGATATGGTGTGCGAATAGTAGGACATTCCCTTGGAGGAGCGATTGCTGCAGTATTGGGAATGAAGGTAGTCATTTTTCTGATGAATTGCATTCCTGGAACTTTTCTTCATCATGTGTGGGCACTCTTTGTACAGGATGCATTGCCGTACCACCACCCCCACCACCACCCGCCCACGCACACACAGCCAAAAAAACACTTTTTCTTCATTAAACATCTGGATGATTGAATGAAATTCACTCATTTGTTTATCTGATCACATTATTACATTGGTAAAGAAGTCAATGTATTGAATCATACCCCACAGATAGCTGATGAAATCTATTGATAGCATATTTTTTAGAGCTGATTACTATCCATTAAAATATCAGATCAATAGAAAAGGCCATTGTGTTAATAGAAAATACAGTTCCTTTAATTGGTAAGTCAATTGGTGATTAATGCACCCTGATTTTATGAATAGACTAATTGTGTTAAAAACAATGGCAGATTAGTTCAAGCATAGAACCAGAGTTTTATTGTTAAATCTGGATTGAAACCCTAGTAAATATATTGAATCTTCTAATGATCACTTGGATCTTCCAAGGTGCCTATATATCTCCATGTATTATCAATCAGTTCTTCTCTAAATAATATATATTTCTGGAGTTAGTACATGTAGTTTATTTATAAATAAAAATTACTATATTGTGTTGAGCAGCTACGCAAACGGTACCCAGATTTACATGTATACACATATGGTGCTCTCCCATGTGTGGGTCTGGTGGTAGCAGATGCTTGTTCTGAATTCATTACCAGGTATTGCCAATGTGTGATTATCTGTGAGTCAATTAAGTGTTGCTGCTCATATGCTAGAAAATTTACTTCCATTCTTGTTAACATCTTTTCAGCATTGTAAACAATGATGAATTTTCAGCGCGCCTTTCAGTAGCATCAATTATGAGACTTCAAGCAGCTGCACTTAAGGCATTGTCAGAAGATGGCACTATTGATATTACAACAATTCTTAAACTTGCTCAGCACTTTACTTCATTGACCGTCTGTCAGAAAAGCATGAACGACGGAGAATCGTCAGTGAATTCTTTGACAGCAATGTCAAGTTGTACAAACCAAATCAACCATGGCCAACTTGAAAATGGTACTACTGAACTTTTTGAATTTGCCATATGAATACATGCCTCATTAAATCATGTTGTGTCTGGTTAACTGTATTTGTCTGCAGCTTCTTCTAGTTGTAACTATTTCATGCATAAGTGCTACTGCTATTTCTGCAGGATTGGCAAAGCGTGAAGCAGGATCCTCTGTTTTGCATGACATAGATACCGATTTTAGGTGTGATGATGAAATCGTTTCAACTGAATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTAC</genome_strand>
        <mrna_strand>ATCAGGGGCTTGNNNCGNTGNNNGGAGNAGGATGNGACCCTTTGGGATATGGTGTGCGAATAGTAGGGCATTCCCTTGGAGGAGCGATTGCTGCAGTATTGGGAATGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCAAACGGTACCCAGATTTACATGTATACACATATGGTGCTCTCCCATGTGTGGGTCTGGTGGTAGCAGATGCTTGTTCTGAATTCATTACCAG............................................................................................CATTGTAAACAATGATGAATTTTCAGCGCGCCTTTCAGTAGCATCAATTATGAGACTTCAAGCAGCTGCACTTAAGGCATTGTCAGAAGATGGCACTATTGATATTACAACAATTCTTAAACTTGCTCAGCACTTTACTTCATTGACCGTCTGTCAGAAAAGCATGAACGACGGAGAATCGTCAGTGAATTCTTTGACAGCAATGTCAAGTTGTACAAACCAAATCAACCATGGCCAACTTGAAAATG........................................................................................................................................GATTGGCAAAGCGTGAAGCAGGATCCTCTGTTTTGCATGACATAGATACCGATTTTAGGTGTGCTGATGAAATCGTTTCAACTGAATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374805" ref_strand="+" ref_description="SGN-E374805 [TUS-14-L16]">
      <seq>ttgttctgtggcacagttacttggtgatcttgtcacttaccgggcatctggaacaggtcatttagagctcttggcaggactagctttattgcagaattcttcttccttctctaaatcctatgaagagtcaagggttgtacccattgaaaggatgcgcaaggctgctttctatcatccatttgctgaagcagcctacacgggtctattacttgatataggaagaaatcctgtacttttttcttgttcatggctctataggcaaggcattcttgctccctggctttggaacaggcgacctttactagaaggtgacaactggtggcgaggtcatgcagcagccttcttgaaacatgttcatttgtcagcacatatgctcagaaaagggcgtgttaatcaagggaagtgtaaagcagcatactttattgtggttttgcataatgtgaaatctgttgtaattgctgtgaggggaactgagacccccgaagacctcataactgatggtttaggcagggaatgctgccttactgaagaagaattagatagcctgctaaatggcaatcattgtgatccataccttcatcaaagagtggtttcgtccactccacactatgcacacttcggagtagttgaggccgcacgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="58063" stop="51829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57763" g_stop="57687" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57686" i_stop="56537" i_length="1150">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56536" g_stop="56415" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="199" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56414" i_stop="56342" i_length="73">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56341" g_stop="56250" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="291" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56249" i_stop="55184" i_length="1066">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55183" g_stop="55078" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="397" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55077" i_stop="53187" i_length="1891">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53186" g_stop="53032" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="552" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53031" i_stop="52220" i_length="812">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52219" g_stop="52129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="643" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E374805" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57763" e_stop="57687"/>
          <exon e_start="56536" e_stop="56415"/>
          <exon e_start="56341" e_stop="56250"/>
          <exon e_start="55183" e_stop="55078"/>
          <exon e_start="53186" e_stop="53032"/>
          <exon e_start="52219" e_stop="52129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAGGTTCGTGCTGATATATAGGGGGTCTGTGTACTTTACTTTTACTTATTCTTTATTTGATGGATATAATACACTTAATCATTCTACAGGAAGTGTGAAAGAATCTGGGTATTCAACCTAAAATCTTAAGACAATTAGTAGACTGATGCATCCTTCGGGGTGGTCCAGTGGTTTGGGCTTGTGATTTACATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCAAGAGAAAGCAAGGGGTTTGCCTTCTTGGTCGAGCTCGTCGCACTGGGCTTGCTTATTGTCGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAAGAGCGGGAATTTTACCCTGCGCGCAACCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATAAAATAAAAATAAAAATAGTAGAGTGATGCAAGACCTTAAATGCCTTTTGGATGCCCTTTTATACTCGATGTGGGACTGGGACATGAAAGGTCCTTAAAAAATCAAAGCTGTTCTAATATTGTATTATGTAGTCTAACATCTGTGCCAAAATCATGCTGGTTGTACATGCATCTGGAGAAGCGTATCCCACATTTCTTAACTAATGAGGGTACCTCCTTAGTATGTTAGGTGTATAGAGTGTAAGCATATCTGATAGTAGGGATGACATAGAAACATAAATAACCTTTGCTCACCCCCCAAAAAGAAAGGACATAGGGTTATCTACACTTACTACAACTAGTTTAGGATATTTGGATGCTGCAGTTCTTTTTAGAAATAGATATTTGATGTTCAAGAGTGATTTCTCTAAGGAAAAGTTGGTATTGATTTAGAAATAGCTATATAAGAAGTTACAAAGTTTTATGTTGGAAACAAAATGGAAAAGAATTCAAAGTTCATTTGAAAAACTTAGAGATTTTAACTGCAAGGGGAACTAAGAGGATAATACTTATTGAATTGACATGATCAAGGTTTTCTGGATTGTTATGCGTTCACTTTGTTCAGTATAGTTCTCATCCAACATTACAGTCAAAATGATAGTCATGAATGCTAGAAGTGCTTTAAATATTGGATTTGTTTTCTATTTCCTCGATTTGGAAGTATTCACTTTGAAAACAAGCTCATCTCTTTCTATCAGTAAGGTAAAAGAAAATGATCTCTTCTTGATATTCAGGACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACGGTATGATAACAAGGCATTGTAATTTGACTTGATTATAGCTCTGCTTATTTTGATGTGGAATGGTCAATTGCAGGGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAGGTCAGACACCCACTGGTTTATCTTAGTTGTAAGATTACTTGGATTTTTAGAGCATGAAATGACATTTGCTTTTTTAAAGTTTAAAAGAAAGTGTTTCAGTGGAAAACCATACACGAGGCTGCAAGTTATACATCAGGATATGGATGAAATACATGGGAACAAAAGCCTGAGAATAAATGGACTCCTATGTGAGTTGACAGGATGAATTAATTGGAATATGGCATAGAAGATTCTCTAACTTTATGAGCAAAAGGATCAACATATCAGACAAGTTGCCAAAAAATGTGATTGTAATGTTTTATGGTAAAGTTGCCTCCATGTGACCAGGAGGTCACAGGTTCGATCTATGGAAACAACCTCTTGTAGAAATGCAGGGTAAGACTGCGTACAATAGAACCTTGTGGTCCAGCCCTTCCTGGGCCCCGTGCTTAGCAGGAGCTTAGTGCACCAGGATACCTTTTTATGGGAGGAGAGTCTAGCTTTGTCGTATGTGGATGAAATAAACAAATGACTATTCCTTAAATAGACCATATACAAGCTCCAATTCTCGCTAGTAAAAGAAGTAATCTTCTTTTGATCACCTCTAAGAGCTTTGGCTTAAAGGAACTCTCTACTTAGCCCTCTTAAATCTGAAAGATCTTGCGAAAAATTAAGATGCTCATCACTCTTAAGTATCCAAGAAGCTAGTTAGAGTATCATACTTCCATACACGGTACAACCCGTGGTGCATGATAACTTCTTGCTGCCTTGCTCCAATCAGGGGACTTCAAATGCAAGTCCACTCTAGTACTGGTGGCAGGAACTGATTTTAAACATAAAAGGATGTAATGGGAACCTTGGTTCTTGTAGCTTTCTTGATTTATATTCAAATACCTGATAATTTAAGACCCAGCACAATCAAATGAAGATTCCTGCTAAGGATTATTGACTTCTTTAAATCTGTTTTCCTTAGAGAAATTCCGAAACCTTATTTCCGAGACACTTTGTCCTTTTCAAACTGTTATTTGATTGTTCGCATAGTCGCTTGATTCTTCTTTTCTTTTTGGAATCAAAATGTATTGTGTAGGCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAAGTAAGTCTAGCTTTAGATCTCTAGGCTATTTTTGGCCGCAAATGTTTTGTGATGACATTCCTAAGTTCTGAACTGTGATCACCTAACTGTAATTCGTGACCTTGTTTCCGGTTATTTATTTGGTTCTATGTTTGTAAGGACATATTGGAACTATGTGATGTCCTACCCCGTGAACTGCATTTTTGATGTCTAAGTTATTTATAAACCATGTGAAGTCTGAACTGTCAGATTGTCATTAAGGTCTGTAATTTCACAAGTTTAAATTGGTTTGAGACTTCTATTCTAGTTCTGAAAAGCGACCGCTTCGTCGCGTGAGGTGATGCAAGGTGAGGGGTGATCGTGCTGGGGGTAACAGTGCAACTTCACCGAATTGCATGCTTAGATAGGAGAAGCTCAAAGCTTGAGATAGACAAACATTTTTGGTCTATATAGGAATGGCAATCGGGCGGGGTGGATGTAGGGTGGGTCTGATTTTACCTTATGCTGGGCAGAGTGTGTCTGTCTTTATGCGGGGGCAGGTAAAGATTTAGTTTTGGAAAAAATTGTGCGGGGCGGGACGGATACGAGGGTTGGGTTTTAGCGAGGAAGAGAACCCGTCCAGCAACTGTCCAAAGGAAGTGTTTTAACAGTGATTTTGATAGCTTAAATCGTCTTTAGTTAATTTCCCCATTAAATTAATTCTATTTAACAAATGTAGAGCTCTGCAATATGAATTCTATTTTTGTCACATGAATTTGTTTGGTAACACCTTATGTTATTGAATTTGTAAGCCTAGATTCTTGTTCATGCTTTTTTACCCTTTTCTTAAAAAAAAATTAACCTCAAAACAAATTGTTGTTTATAATAATCAATGAATCTCAATATGATTTGATTATATAGGCAAAGTTATCATTGATTCTGACCAAGAGGGCTACTATAATTAAAATAAATATTTTATTGCTTATGCTCTACCACTATTAAAACAGCAACAAAGTTTTTTTTTATAATTTTACATTTATATCTTCAGTTGTAAGTTTGTCATGAAGAGTTAATGTTGTTAGAAGCAGAAAAATGAGGTTTATGGGGCGCGTGTTCATGCGGGGTTCATGGGGAAGAGGGGGGGGGGGGGAGGAGTGGAGCGCGGCAAAAAACAAAAAATTATACAATACGGGGCGGAGCGGGGTAAAATCTTTGCTGGTTCGCCCCGCACCGCCCCATTGCCATCCCTAGGTCTATAGTAAAGCCCATCTCATCATAAAAAGTGTGGATAGATGTTTTGGGAGTAAACTCATCAGATTACAAACACCGATCATTAGAGAAATTATGATTTTGAACTGGCATGTGTGACACTGCAACTCCAGTCCACTTGATTGCAGATACTCTTATGCAATTTTTCTTCAGTCTTTGATACTTTCCTTCTTCTTGCCCTCCGACTAGATTTGTCTTTTAGTTTTCATCTTAGCTCTACTATGTTATTGAATTCTAGGCAACAAGTCCTTGACATCCCTCAAAAGCTTTTATATATATATTGAATCAAGTCAAACCATGAGCACTTTACATGTCTTATTTTGGATTTTTTTTCTTTTTAGGCAGAAATAAGTTTTGAACTGTTGTGCTTATTGTATTTTAGGTTCCATCTTAGATCTTATATGTTATTGATATTCAGGCAACAAGTCTTCATCCCTCAAAATTTGCAGTGTATTTTTTTGGTTCTATATATATATTTTGAATCAAGTGAAACTATGATACTTCACATGTCTTATTTATTTATTAATTTATTTTGGGGGGTGGGTCGGGGGAATAGGTTTTGAACCCTTGTGCTTTGTGCTTATTGTCTTTATTTTTTCTTATCCAAAAAATAAATAGTGTCTTCCATTTTAAAAAAATAACAACTTCCATATCTCTTTTCCAGGGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTGAAGAAGAATTAGATAGCCTGCTAAAGTAATCTCTCTTTCTCTCTCTATTTTATTTTTCTGTCTCCTCTACACACTCATTTGGTTCTTGTTACATATGCACTTGCACTTAAATCTGCTTCTGGCATCCTTTGACTGCCTTATTTGTTGACATGACATCTCTGCATTTATCTTTGAAATTCCAGCTGTGCGTCTTAAGTACTTGTTGAGATTAGGTACTTGGGACCATTAAAATACCTTGCAAGTTCCCAATTGCCAGGACTCCTGGATAAATGTTTTTGGATTACCACCTCTCAACAGTCCCTTTCTCATGTCCGATTCTTAGGTTTTTGCAGATCATGGACCTTAGACTTGAAAAATAAAAAACCAGACCATCTTTTTTTTTTTTTGACAAGGAAACAAATCTGTATATGAATCACCAACCCAAAAGTGTTAACATACACAGTGTAATCTGTATATAGGGTCTCAATGTAATAATGTAGAGACACAATTCAATAACATCTTTTTTCAATATTTCTCACATGGTATTAGAACCTCTACGATGTTGGTAGAGAATCAAAGAACTTCCACTGCAGGCGTGCGGCTATTACCGATATATGCCACCTGTCTGGCCAACGATAAAAAACCATAGAAAGTTAGGAAAAATGATCTATACTCACATAAGTGATTTCTTGGGTTAGATTAAAGGAATCAAGAAGAGATTGAACTTTTGTTGTAGCAATATTTGTGATTTCTTTTTTGCTCTCATTACTGCCTTAATGTTCTGTACTTGGTTTCTGCATGGCATATAAGCACCACTATCTGACTATTCTCCATTTTTTTTGTTTCTTAATACATCAGTGGCAATCATTGTGATCCATACCTTCATCAAAGAGTGGTTTCGTCCACTCCACACTATGCACACTCCGGAGTAGTTGAGGCCGCACGTGAT</genome_strand>
        <mrna_strand>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACG.........................................................................GGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTGAAGAAGAATTAGATAGCCTGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAATCATTGTGATCCATACCTTCATCAAAGAGTGGTTTCGTCCACTCCACACTATGCACACTTCGGAGTAGTTGAGGCCGCACGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202094" ref_strand="+" ref_description="SGN-E202094 [cLEC-7-E9]">
      <seq>ttgttctgtggcacagttacttggtgatcttgtcacttaccgggcatctggaacaggtcatttagagctcttggcaggactagctttattgcagaattcttcttccttctctaaatcctatgaagagtcaagggttgtacccattgaaaggatgcgcaaggctgctttctatcatccatttgctgaagcagcctacacgggtctattacttgatataggaagaaatcctgtacttttttcttgttcatggctctataggcaaggcattcttgctccctggctttggaacaggcgacctttactagaaggtgacaactggtggcgaggtcatgcagcagccttcttgaaacatgttcatttgtcagcacatatgctcagaaaagggcgtgttaatcaagggaagtgtaaagcagcatactttattgtggttttgcataatgtgaaatctgttgtaattgctgtgaggggaactgagacccccgaagacctcataactgatggtttaggcagggaatgctgccttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="58063" stop="52757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57763" g_stop="57687" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57686" i_stop="56537" i_length="1150">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56536" g_stop="56415" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="199" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56414" i_stop="56342" i_length="73">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56341" g_stop="56250" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="291" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56249" i_stop="55184" i_length="1066">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55183" g_stop="55078" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="397" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55077" i_stop="53187" i_length="1891">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53186" g_stop="53057" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="527" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E202094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57763" e_stop="57687"/>
          <exon e_start="56536" e_stop="56415"/>
          <exon e_start="56341" e_stop="56250"/>
          <exon e_start="55183" e_stop="55078"/>
          <exon e_start="53186" e_stop="53057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAGGTTCGTGCTGATATATAGGGGGTCTGTGTACTTTACTTTTACTTATTCTTTATTTGATGGATATAATACACTTAATCATTCTACAGGAAGTGTGAAAGAATCTGGGTATTCAACCTAAAATCTTAAGACAATTAGTAGACTGATGCATCCTTCGGGGTGGTCCAGTGGTTTGGGCTTGTGATTTACATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCAAGAGAAAGCAAGGGGTTTGCCTTCTTGGTCGAGCTCGTCGCACTGGGCTTGCTTATTGTCGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAAGAGCGGGAATTTTACCCTGCGCGCAACCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATAAAATAAAAATAAAAATAGTAGAGTGATGCAAGACCTTAAATGCCTTTTGGATGCCCTTTTATACTCGATGTGGGACTGGGACATGAAAGGTCCTTAAAAAATCAAAGCTGTTCTAATATTGTATTATGTAGTCTAACATCTGTGCCAAAATCATGCTGGTTGTACATGCATCTGGAGAAGCGTATCCCACATTTCTTAACTAATGAGGGTACCTCCTTAGTATGTTAGGTGTATAGAGTGTAAGCATATCTGATAGTAGGGATGACATAGAAACATAAATAACCTTTGCTCACCCCCCAAAAAGAAAGGACATAGGGTTATCTACACTTACTACAACTAGTTTAGGATATTTGGATGCTGCAGTTCTTTTTAGAAATAGATATTTGATGTTCAAGAGTGATTTCTCTAAGGAAAAGTTGGTATTGATTTAGAAATAGCTATATAAGAAGTTACAAAGTTTTATGTTGGAAACAAAATGGAAAAGAATTCAAAGTTCATTTGAAAAACTTAGAGATTTTAACTGCAAGGGGAACTAAGAGGATAATACTTATTGAATTGACATGATCAAGGTTTTCTGGATTGTTATGCGTTCACTTTGTTCAGTATAGTTCTCATCCAACATTACAGTCAAAATGATAGTCATGAATGCTAGAAGTGCTTTAAATATTGGATTTGTTTTCTATTTCCTCGATTTGGAAGTATTCACTTTGAAAACAAGCTCATCTCTTTCTATCAGTAAGGTAAAAGAAAATGATCTCTTCTTGATATTCAGGACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACGGTATGATAACAAGGCATTGTAATTTGACTTGATTATAGCTCTGCTTATTTTGATGTGGAATGGTCAATTGCAGGGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAGGTCAGACACCCACTGGTTTATCTTAGTTGTAAGATTACTTGGATTTTTAGAGCATGAAATGACATTTGCTTTTTTAAAGTTTAAAAGAAAGTGTTTCAGTGGAAAACCATACACGAGGCTGCAAGTTATACATCAGGATATGGATGAAATACATGGGAACAAAAGCCTGAGAATAAATGGACTCCTATGTGAGTTGACAGGATGAATTAATTGGAATATGGCATAGAAGATTCTCTAACTTTATGAGCAAAAGGATCAACATATCAGACAAGTTGCCAAAAAATGTGATTGTAATGTTTTATGGTAAAGTTGCCTCCATGTGACCAGGAGGTCACAGGTTCGATCTATGGAAACAACCTCTTGTAGAAATGCAGGGTAAGACTGCGTACAATAGAACCTTGTGGTCCAGCCCTTCCTGGGCCCCGTGCTTAGCAGGAGCTTAGTGCACCAGGATACCTTTTTATGGGAGGAGAGTCTAGCTTTGTCGTATGTGGATGAAATAAACAAATGACTATTCCTTAAATAGACCATATACAAGCTCCAATTCTCGCTAGTAAAAGAAGTAATCTTCTTTTGATCACCTCTAAGAGCTTTGGCTTAAAGGAACTCTCTACTTAGCCCTCTTAAATCTGAAAGATCTTGCGAAAAATTAAGATGCTCATCACTCTTAAGTATCCAAGAAGCTAGTTAGAGTATCATACTTCCATACACGGTACAACCCGTGGTGCATGATAACTTCTTGCTGCCTTGCTCCAATCAGGGGACTTCAAATGCAAGTCCACTCTAGTACTGGTGGCAGGAACTGATTTTAAACATAAAAGGATGTAATGGGAACCTTGGTTCTTGTAGCTTTCTTGATTTATATTCAAATACCTGATAATTTAAGACCCAGCACAATCAAATGAAGATTCCTGCTAAGGATTATTGACTTCTTTAAATCTGTTTTCCTTAGAGAAATTCCGAAACCTTATTTCCGAGACACTTTGTCCTTTTCAAACTGTTATTTGATTGTTCGCATAGTCGCTTGATTCTTCTTTTCTTTTTGGAATCAAAATGTATTGTGTAGGCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAAGTAAGTCTAGCTTTAGATCTCTAGGCTATTTTTGGCCGCAAATGTTTTGTGATGACATTCCTAAGTTCTGAACTGTGATCACCTAACTGTAATTCGTGACCTTGTTTCCGGTTATTTATTTGGTTCTATGTTTGTAAGGACATATTGGAACTATGTGATGTCCTACCCCGTGAACTGCATTTTTGATGTCTAAGTTATTTATAAACCATGTGAAGTCTGAACTGTCAGATTGTCATTAAGGTCTGTAATTTCACAAGTTTAAATTGGTTTGAGACTTCTATTCTAGTTCTGAAAAGCGACCGCTTCGTCGCGTGAGGTGATGCAAGGTGAGGGGTGATCGTGCTGGGGGTAACAGTGCAACTTCACCGAATTGCATGCTTAGATAGGAGAAGCTCAAAGCTTGAGATAGACAAACATTTTTGGTCTATATAGGAATGGCAATCGGGCGGGGTGGATGTAGGGTGGGTCTGATTTTACCTTATGCTGGGCAGAGTGTGTCTGTCTTTATGCGGGGGCAGGTAAAGATTTAGTTTTGGAAAAAATTGTGCGGGGCGGGACGGATACGAGGGTTGGGTTTTAGCGAGGAAGAGAACCCGTCCAGCAACTGTCCAAAGGAAGTGTTTTAACAGTGATTTTGATAGCTTAAATCGTCTTTAGTTAATTTCCCCATTAAATTAATTCTATTTAACAAATGTAGAGCTCTGCAATATGAATTCTATTTTTGTCACATGAATTTGTTTGGTAACACCTTATGTTATTGAATTTGTAAGCCTAGATTCTTGTTCATGCTTTTTTACCCTTTTCTTAAAAAAAAATTAACCTCAAAACAAATTGTTGTTTATAATAATCAATGAATCTCAATATGATTTGATTATATAGGCAAAGTTATCATTGATTCTGACCAAGAGGGCTACTATAATTAAAATAAATATTTTATTGCTTATGCTCTACCACTATTAAAACAGCAACAAAGTTTTTTTTTATAATTTTACATTTATATCTTCAGTTGTAAGTTTGTCATGAAGAGTTAATGTTGTTAGAAGCAGAAAAATGAGGTTTATGGGGCGCGTGTTCATGCGGGGTTCATGGGGAAGAGGGGGGGGGGGGGAGGAGTGGAGCGCGGCAAAAAACAAAAAATTATACAATACGGGGCGGAGCGGGGTAAAATCTTTGCTGGTTCGCCCCGCACCGCCCCATTGCCATCCCTAGGTCTATAGTAAAGCCCATCTCATCATAAAAAGTGTGGATAGATGTTTTGGGAGTAAACTCATCAGATTACAAACACCGATCATTAGAGAAATTATGATTTTGAACTGGCATGTGTGACACTGCAACTCCAGTCCACTTGATTGCAGATACTCTTATGCAATTTTTCTTCAGTCTTTGATACTTTCCTTCTTCTTGCCCTCCGACTAGATTTGTCTTTTAGTTTTCATCTTAGCTCTACTATGTTATTGAATTCTAGGCAACAAGTCCTTGACATCCCTCAAAAGCTTTTATATATATATTGAATCAAGTCAAACCATGAGCACTTTACATGTCTTATTTTGGATTTTTTTTCTTTTTAGGCAGAAATAAGTTTTGAACTGTTGTGCTTATTGTATTTTAGGTTCCATCTTAGATCTTATATGTTATTGATATTCAGGCAACAAGTCTTCATCCCTCAAAATTTGCAGTGTATTTTTTTGGTTCTATATATATATTTTGAATCAAGTGAAACTATGATACTTCACATGTCTTATTTATTTATTAATTTATTTTGGGGGGTGGGTCGGGGGAATAGGTTTTGAACCCTTGTGCTTTGTGCTTATTGTCTTTATTTTTTCTTATCCAAAAAATAAATAGTGTCTTCCATTTTAAAAAAATAACAACTTCCATATCTCTTTTCCAGGGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTG</genome_strand>
        <mrna_strand>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACG.........................................................................GGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216641" ref_strand="-" ref_description="SGN-E216641 [cLEL-1-I16](-)">
      <seq>ttttttttttttttttttttaaaaggaaaaaagaaaggcttatttccaaaacaaagagagagtaagagctaccagttacatcattcaccttttattattggcattagtccaaagctaagagaaaggatttcgaactggaaaacattatactatgaatctaaaaaatgacttcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="4924" stop="61427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60893" g_stop="60907" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.533"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60908" i_stop="60965" i_length="58">
            <donor d_prob="0.193" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60966" g_stop="61127" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="177" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E216641" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216641" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60893" e_stop="60907"/>
          <exon e_start="60966" e_stop="61127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTATACTTTTGTAAGTTATAATCAAGAATTAGAAAACTTATCTTCATCAAACAGAAAGGAGAATACAGATGATAAAAGGAAAAAAGAAAGGCTTATTTCCAAAACAAAGAGAGAGTAAGAGCTACCAGTTACATCATTCACCTTTTATTATTGGCATTAGTCCAAAGCTAAGAGAAAGGATTTCGAACTGGAAAACATTATACTATGAATCTAAAAAATGACTTCAAAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT..........................................................TTTTTAAAAGGAAAAAAGAAAGGCTTATTTCCAAAACAAAGAGAGAGTAAGAGCTACCAGTTACATCATTCACCTTTTATTATTGGCATTAGTCCAAAGCTAAGAGAAAGGATTTCGAACTGGAAAACATTATACTATGAATCTAAAAAATGACTTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="67652" stop="66322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67357" g_stop="66622" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67357" e_stop="66622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="67652" stop="66362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67357" g_stop="66662" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67357" e_stop="66662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAGTGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="67652" stop="66363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67357" g_stop="66663" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67357" e_stop="66663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="67715" stop="66376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67416" g_stop="66676" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67416" e_stop="66676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243204" ref_strand="+" ref_description="SGN-E243204 [cLEE-2-O19]">
      <seq>aggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="73202" stop="74336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73502" g_stop="74036" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E243204" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73502" e_stop="74036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGTATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGGGCCACCACAACATCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTCTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATCGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAACATCGCACATAAAACAGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCATGAATAAGGACGGATATATATTTTGAACAAATAGGAATTTGTTTGTTTGGAGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577849" ref_strand="+" ref_description="SGN-E577849 [LE08AD09]">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="74038" stop="75025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74340" g_stop="74725" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E577849" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74340" e_stop="74725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGCCGGGGCCACTGTTATCTGCTCCCCGATCACGGGCGAGGTATTTTCCGCTCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGCTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCCTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549354" ref_strand="+" ref_description="SGN-E549354 [TUS-69-K9](-)">
      <seq>atttctccaagtagttcatcttttatcttcgtcttgttcaagacactttctattagtttatcgctttaagtgctaatcttttgtatgttttattgcatgtgaaaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatatcttcttcgagtcgtagaaccctctcaaaaggtgtacaggtcggaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagttgcatatattgagaagctgtataccaaccatatacacagtttatcccgtgatatacagatcaaaagatgtacaggggatcaaattcaaaacctgggttgatggcagtgaagaacgctgctgaaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacattatcccttaaataggtgtaaaaatatgaatggtagcaggcgtacgaaaattcgaactccatgaagatcaaaggtgctcgaggaaggagtattagaagatttttttttatttattatgttgtatttattttgggcataagcccttgtcatttttactttccttatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78950" stop="4924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78650" g_stop="77954" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E549354" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78650" e_stop="77954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTC-AAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTG-AAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTTGTATGTTTAGACTAGGACAGGTACG</genome_strand>
        <mrna_strand>ATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATATCTTCTTCGAGTCGTAGAACCCTCTCAAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTTGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATCCCGTGATATACAGATCAAAAGATGTACAGGGGATCAAATTCAAAACCTGGGTTGATGGCAGTGAAGAACGCTGCTGAAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACATTATCCCTTAAATAGGTGTAAAAATATGAATGGTAGCAGGCGTACGAAAATTCGAACTCCATGAAGATCAAAGGTGCTCGAGGAAGGAGTATTAGAAGA--TTTTT-TT-TTATTTA-TTAT---GTTGTATTTATTTTGGGCATAAGCCCTTGTCATTTTTACTTTCCTTATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392751" ref_strand="+" ref_description="SGN-E392751 [TUS-36-B14]">
      <seq>aaaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatatcttcttcgagtcatagaaccctctcaaaaggtgtacaggtcagaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagttgcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtacgctgctgaaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcaaacttcatgaagatcgaaggtgctcgaggaaggagtattagaagattttttttatttgtttattaagttgtatttattttgggcataagcccttgtcatttttactttccgtatatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78849" stop="4927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78549" g_stop="77970" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E392751" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78549" e_stop="77970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTC-AAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAA-AGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTTGTATGTTTA</genome_strand>
        <mrna_strand>AAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATATCTTCTTCGAGTCATAGAACCCTCTCAAAAGGTGTACAGGTCAGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTTGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTACGCTGCTGAAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCAAACTTCATGAAGATCGAAGGTGCTCGAGGAAGGAGTATTAGAAGA---TTTT-TT-TTATTTGTTTATTAAGTTGTATTTATTTTGGGCATAAGCCCTTGTCATTTTTACTTTCCGTATATTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392856" ref_strand="+" ref_description="SGN-E392856 [TUS-36-B14](-)">
      <seq>aaaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatatcttcttcgagtcatagaaccctctcaaaaggtgtacaggtcagaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagttgcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtacgctgctgaaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcaaacttcatgaagatcgaaggtgctcgaggaaggagtattagaagattttttttatttgtttattaagttgtatttattttgggcataagcccttgtcatttttactttccgtatattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78849" stop="4927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78549" g_stop="77971" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E392856" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78549" e_stop="77971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTC-AAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAA-AGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTTGTATGTTT</genome_strand>
        <mrna_strand>AAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATATCTTCTTCGAGTCATAGAACCCTCTCAAAAGGTGTACAGGTCAGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTTGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTACGCTGCTGAAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCAAACTTCATGAAGATCGAAGGTGCTCGAGGAAGGAGTATTAGAAGA---TTTT-TT-TTATTTGTTTATTAAGTTGTATTTATTTTGGGCATAAGCCCTTGTCATTTTTACTTTCCGTATATTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240512" ref_strand="+" ref_description="SGN-E240512 [cLED-21-N20]">
      <seq>aaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatatcttcttcgagtcatagaaccctctcaaaaggtgtacaggtcagaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagttgcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtacgctgctgaaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcaaacttcatgaagatcgaaggtgctcgaggaaggagtattaaaagatttttttatttgtttattaagtggaattattttgggcataagcccttgtcattttactttccggatatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78848" stop="4928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78548" g_stop="77971" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E240512" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78548" e_stop="77971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTC-AAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAA-GAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTTGTATGTTT</genome_strand>
        <mrna_strand>AACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATATCTTCTTCGAGTCATAGAACCCTCTCAAAAGGTGTACAGGTCAGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTTGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTACGCTGCTGAAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCAAACTTCATGAAGATCGAAGGTGCTCGAGGAAGGAGTATTAAAAGATTTTTTTA-T-TTGTTTA--T-T-AAG-TGGAATTATTTTGGGCATAAGCCCTTGTCA-TTTTACTTTCCGGATATTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392486" ref_strand="+" ref_description="SGN-E392486 [TUS-36-K4](-)">
      <seq>tcattttcccccctctaactcatttctccaagtagttcatcttttatcttcgtcttgttcaagacactttctattagtttatcgctttaagtgctaatcttttgtatgttttattgcatgtgaaaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatgtcttcttcgagtcatagaaccctctcaaaggtgtacaggtcggaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagtggcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtaagctgctgaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcgaacttcatgaagatcgaaggtgctcaaggaaggagtattagaagatttttttattattatttatttattaagttgtatttattttgggtataagcccttgtcatttttactttccgtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78971" stop="77688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78671" g_stop="77979" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E392486" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78671" e_stop="77979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTATCCCCCTCTAACTCATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTT</genome_strand>
        <mrna_strand>TCATTTTCCCCCCTCTAACTCATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATTAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392487" ref_strand="+" ref_description="SGN-E392487 [TUS-36-K6](-)">
      <seq>ttcaagacactttctattagtttatcgctttaagtgctaatcttttgtatgttttattgcatgtgaaaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatgtcttcttcgagtcatagaaccctctcaaaggtgtacaggtcggaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagtggcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtaagctgctgaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcgaacttcatgaagatcgaaggtgctcaaggaaggagtattagaagatttttttattattatttatttattaagttgtatttattttgggtataagcccttgtcatttttactttccgtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78914" stop="77688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78614" g_stop="77979" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E392487" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78614" e_stop="77979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTT</genome_strand>
        <mrna_strand>TTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATTAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377869" ref_strand="+" ref_description="SGN-E377869 [TUS-21-P15](-)">
      <seq>ctgttattatccctacttgttgtgagattttatttcttaatatcattcggaattatttttgaagtcatttatccccctctaactcatttctccaagtagtcattctttaatcttcgtcttgttcaagacactttctattagtttatcgctataagtgataatcttttgtatgttttattgcatgtgaaaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatgtcttcttcgagtcatagaaccctctcaaaggtgtacaggtcggaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagtggcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtaagctgctgaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcgaacttcatgaagatcgaaggtgctcaaggaaggagtattagaagatttttttattattatttatttattaagttgtatttattttgggtataagcccttgtcatttttactttccgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="79035" stop="77688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78735" g_stop="77980" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E377869" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78735" e_stop="77980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTATTTATCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTTGAAGTCATTTATCCCCCTCTAACTCATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCT</genome_strand>
        <mrna_strand>CTGTTATTATCCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTTGAAGTCATTTATCCCCCTCTAACTCATTTCTCCAAGTAGTCATTCTTTAATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTATAAGTGATAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATTAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336434" ref_strand="+" ref_description="SGN-E336434 [cTOE-4-O9]">
      <seq>ctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatgtcttcttcgagtcatagaaccctctcaaaggtgtacaggtcggaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagtggcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtaagctgctgaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcgaacttcatgaagatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78844" stop="77792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78544" g_stop="78092" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E336434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78544" e_stop="78092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCG</genome_strand>
        <mrna_strand>CTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240589" ref_strand="+" ref_description="SGN-E240589 [cLED-21-B23]">
      <seq>ccagaaaccctcctcgagtcctcatggactttatnncctctcactacacttcctcatcgagccataaaggctcagaatatcttcttcgagtcatagaaccctctcaaaaggtgtacaggtcagaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagttgcatatattgagaagctgtataccaaccatatacacagtttataccgggatatacatatcaaaagatgtacaggaggcctagttcgaaacctgcgttgatggcagtaaagtacgctgctgaaaaagaatttttcaactctcgaaagttgaaaaacaggctgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78850" stop="77891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78553" g_stop="78191" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E240589" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78553" e_stop="78191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTC-AAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTG-AAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATA</genome_strand>
        <mrna_strand>CCAGAAACCCTCCTCGAGTCCTCATGGACTTTATNNCCTCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATATCTTCTTCGAGTCATAGAACCCTCTCAAAAGGTGTACAGGTCAGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTTGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGGGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGCGTTGATGGCAGTAAAGTACGCTGCTGAAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235394" ref_strand="+" ref_description="SGN-E235394 [cLED-11-D14]">
      <seq>atagtctgcgtctgaaatgtcttcgataaacagttgcatttctccctttgatcgtaatcgtcttctcaagttttcctcgtcttttcaacttagcatgttgtttcgatcgcgaagtcgctacctttgattgtgttgttgttgttgttctcgcttttcgtttcatggctgctgaaggaatctgttcaacttttccaaatgtgatgtattcttgtgtgtttgttgaaatgcgaatgaggttctttctcatctcccaatagtttgtgatagtcgaatttatttcggaatgttttaaggttgagttttagttcatttttttccagctaaaggcatggttgttcatggcggtgttctccgttagaaaatttcatgaacgcacagtccttccatatgcttctctctttgcattccacatgtatgttttgtgtttatgtgtgatacggtaatttggaaataagtatttttcgtatttagcatcatcatgtcttgccaattggatatgctgtaccaatgaagtatggcatgtttactttgcatttactaaacagcagtagtgcatcctcatgcagatgacaaattcattaatatgtgtacatgcattgcttgcccctgttatttatcctacttgttgtgagattttatttcttaatatcattcggaattattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="79641" stop="78376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79341" g_stop="78676" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E235394" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79341" e_stop="78676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAGTCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCAGATGACAAATTCATTAATATGTGTACATGCATTGCTTGCCCCTGTTATTTATCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTT</genome_strand>
        <mrna_strand>ATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAATCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCAGATGACAAATTCATTAATATGTGTACATGCATTGCTTGCCCCTGTTATTTATCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392246" ref_strand="+" ref_description="SGN-E392246 [TUS-36-K4]">
      <seq>tatagtctgcgtctgaaatgtcttcgataaacagttgcatttctccctttgatcgtaatcgtcttctcaagttttcctcgtcttttcaacttagcatgttgtttcgatcgcgaagtcgctacctttgattgtgttgttgttgttgttctcgcttttcgtttcatggctgctgaaggaatctgttcaacttttccaaatgtgatgtattcttgtgtgtttgttgaaatgcgaatgaggttctttctcatctcccaatagtttgtgatagtcgaatttatttcggaatgttttaaggttgagttttagttcatttttttccagctaaaggcatggttgttcatggcggtgttctccgttagaaaatttcatgaacgcacagtccttccatatgcttctctctttgcattggacatgtatgttttgtgtttatgtgtgatacggtaatttggaaataagtatttttcgtatttagcatcatcatgtcttgcccattggatatgctgtaccaatgaagtatggcatgtttactttgcatttactaaacagcagtagttgcatcctcatgcagatgacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="79642" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79342" g_stop="78767" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E392246" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79342" e_stop="78767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAGTCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAG-TGCATCCTCATGCAGATGACAAAT</genome_strand>
        <mrna_strand>TATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAATCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTGGACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCCATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTTGCATCCTCATGCAGATGACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377870" ref_strand="+" ref_description="SGN-E377870 [TUS-21-P15]">
      <seq>atagtctgcgtctgaaatgtcttcgataaacagttgcatttctccctttgatcgtaatcgtcttctcaagttttcctcgtcttttcaacttagcatgttgtttcgatcgcgaagtcgctacctttgattgtgttgttgttgttgttctcgcttttcgtttcatggctgctgaaggaatctgttcaacttttccaaatgtgatgtattcttgtgtgtttgttgaaatgcgaatgaggttctttctcatctcccaatagtttgtgatagtcgaatttatttcggaatgttttaaggttgagttttagttcatttttttccagctaaaggcatggttgttcatggcggtgttctccgttagaaaatttcatgaacgcacagtccttccatatgcttctctctttgcattccacatgtatgttttgtgtttatgtgtgatacggtaatttggaaataagtatttttcgtatttagcatcatcatgtcttgccaattggatatgctgtaccaatgaagtatggcatgtttactttgcatttactaaacagcagtagtgcatcctcatgcacatgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="79641" stop="78468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79341" g_stop="78768" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E377870" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79341" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAGTCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCAGATGACAAA</genome_strand>
        <mrna_strand>ATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAATCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCACATGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392247" ref_strand="+" ref_description="SGN-E392247 [TUS-36-K6]">
      <seq>tatagtctgcgtctgaaatgtcttcgataaacagttgcatttctccctttgatcgtaatcgtcttctcaagttttcctcgtcttttcaacttagcatgttgtttcgatcgcgaagtcgctacctttgattgtgttgttgttgttgttctcgcttttcgtttcatggctgctgaaggaatctgttcaacttttccaaatgtgatgtattcttgtgtgtttgttgaaatgcgaatgaggttctttctcatctcccaatagtttgtgatagtcgaatttatttcggaatgttttaaggttgagttttagttcatttttttccagctaaaggcatggttgttcatggcggtgttctccgttagaaaatttcatgaacgcacagtccttccatatgcttctctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="79642" stop="78641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79342" g_stop="78941" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E392247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79342" e_stop="78941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAGTCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTT</genome_strand>
        <mrna_strand>TATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAATCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268710" ref_strand="+" ref_description="SGN-E268710 [cLEM-16-F21]">
      <seq>aaacattggggatttgattttaaagttggaattttgttgaaatttgagagataaaaatctggaagagtgttgggagttagaaatttggttggacgattgagcgaaaaattgaagagagggaaagagtcgcgcaactcaagagactgaagtcacgatcctgttccctttgctcgtcgggtcgttttcaatacagctttgagctcatttggtggtggaagctcgttacctcactcgtcgttgccgtttgctgcataaaaaggggtgagaatcgacccttattttgtttatgactcgtttttttcgctcgattgttgcttgtatgtggttggctgacatttggttgtgactcgaagtctgtcattgcgtattgcctttcttctatagttttgctgttagtttggttgtagtccgagtcgacgttttccagttttgggagtatggggtgcaaattttgtatagtctgcgtctgaaatgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="80096" stop="79018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79796" g_stop="79318" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E268710" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79796" e_stop="79318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGGGGATTTGATTTTAAGGTTGGAATTTTGTTGAAATTTGAGAGAGAAAAATCTGGAAGAGTGTTGGGAGTTAGAAATTTGGTTGGACGATTGAGCGAAAAATTGAAGAGAGGGAAAGAGTCGCGCAACTCAGGAGACTGAAGTCACGATCCTGTTCCCTTTGCTCGTCGGGTCGTTTTCAATACAGCTTTGAGCTCATTTGGTGGTGGAAGCTCGTTACCTCACTCGTCGTTGCCGTTTGCTGCATAAAAAGGGGTGAGAATCGACCCTTATTTTGTTTATGACTCGTTTTTTTCGCTCGATTGTTGCTTGTATGTGGTTGGCTGACATTTGGTTGTGACTCGAAGTCTGTCATTGCGTATTGCCTTTCTTCTATAGTTTTGCTGTTAGTTTGGTTGTAGTCCGAGTCGACGTTTTCCAGTTTTGGGAGTATGGGGTGCAAATTTTGTATAGTCTGCGTCTGAAATGTCTTC</genome_strand>
        <mrna_strand>AAACATTGGGGATTTGATTTTAAAGTTGGAATTTTGTTGAAATTTGAGAGATAAAAATCTGGAAGAGTGTTGGGAGTTAGAAATTTGGTTGGACGATTGAGCGAAAAATTGAAGAGAGGGAAAGAGTCGCGCAACTCAAGAGACTGAAGTCACGATCCTGTTCCCTTTGCTCGTCGGGTCGTTTTCAATACAGCTTTGAGCTCATTTGGTGGTGGAAGCTCGTTACCTCACTCGTCGTTGCCGTTTGCTGCATAAAAAGGGGTGAGAATCGACCCTTATTTTGTTTATGACTCGTTTTTTTCGCTCGATTGTTGCTTGTATGTGGTTGGCTGACATTTGGTTGTGACTCGAAGTCTGTCATTGCGTATTGCCTTTCTTCTATAGTTTTGCTGTTAGTTTGGTTGTAGTCCGAGTCGACGTTTTCCAGTTTTGGGAGTATGGGGTGCAAATTTTGTATAGTCTGCGTCTGAAATGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214181" ref_strand="+" ref_description="SGN-E214181 [cLEC-77-I5]">
      <seq>aagttttgcaatagtcgctggaattggaccttcaagcatattgttgccgagtgagatccccattaatgtttttgactcccatagttgatctggtaccatcccagagaattggtttttcgatagctcaagagtaataagctgaagctccccaagataagaaggcagtttacctgagagattgtttccagacaacaccaagtctgtgaggcttgaacagttcgcgaaagtactttggatgtcaccagtgaagttgttatccgacaacaccagcacgctcaatgatttggcaccacatatctctgaagacaactcaccagatagactgttagcactgacatcaagaacagatagcaaagggagatacagtggtgggagaggtccacttaggaagttctttgacaccattattgactctacttgcgtccagttggaaatccacataggcagggggcctgataagccgtttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="83287" stop="84356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83587" g_stop="84056" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E214181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83587" e_stop="84056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTGCAATAGTCGCTGGAATTGGACCTTCAAGCATATTGTTGCCGAGTGAGATCCCCATTAATGTTTTTGACTCCCATAGTTGATCTGGTACCATCCCAGAGAATTGGTTTTTCGATAGCTCAAGAGTAATAAGCTGAAGCTCCCCAAGATAAGAAGGCAGTTTACCTGAGAGATTGTTTCCAGACAACACCAAGTCTGTGAGGCTTGAACAGTTCGCGAAAGTACTTTGGATGTCACCAGTGAAGTTGTTATCCGACAACACCAGCACGCTCAATGATTTGGCACCACATATCTCTGAAGACAACTCACCAGATAGACTGTTAGCACTGACATCAAGAACAGATAGCAAAGGGAGATACAGTGGTGGGAGAGGTCCACTTAGGAAGTTCTTTGACACCATTATTGACTCTACTTGCGTCCAGTTGGAAATCCACATAGGCAGGGGGCCTGATAAGCCGTTTGAAT</genome_strand>
        <mrna_strand>AAGTTTTGCAATAGTCGCTGGAATTGGACCTTCAAGCATATTGTTGCCGAGTGAGATCCCCATTAATGTTTTTGACTCCCATAGTTGATCTGGTACCATCCCAGAGAATTGGTTTTTCGATAGCTCAAGAGTAATAAGCTGAAGCTCCCCAAGATAAGAAGGCAGTTTACCTGAGAGATTGTTTCCAGACAACACCAAGTCTGTGAGGCTTGAACAGTTCGCGAAAGTACTTTGGATGTCACCAGTGAAGTTGTTATCCGACAACACCAGCACGCTCAATGATTTGGCACCACATATCTCTGAAGACAACTCACCAGATAGACTGTTAGCACTGACATCAAGAACAGATAGCAAAGGGAGATACAGTGGTGGGAGAGGTCCACTTAGGAAGTTCTTTGACACCATTATTGACTCTACTTGCGTCCAGTTGGAAATCCACATAGGCAGGGGGCCTGATAAGCCGTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325111" ref_strand="+" ref_description="SGN-E325111 [cTOC-13-G17]">
      <seq>aaggtccttgttagatgaatgtgccaaagcctttggttcgtgatccttatgcttatggaaaccacagccggggaggtcaaaacggggatgatggagcttcaagaagcaataacaaaagtttcaagaaccatagattcctcagtgtttcatccattgttgcaatctctgctgcagctgtgatcgcggttggagtaatgataataaccttactcaatgcttctgttcgaaggaggatcacgttcgttgacaacgccttggagagtatgtgctcaagttcttctaaatcagggaccctagccactggaaaacttgtgttattggacaccaaatcttccccggattggactaatagcagtcttgaatcaatcctagacaaggcatctcaaatcggtgaaggtgtctttgggactgtttacaaagccccattgggaggggaaggaagaatagttttaaacctgcaagaagcttgtaacatcaaaaatcctccaatatcctgaggacttcgatagagaagttagagttttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="86481" stop="87603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86781" g_stop="87303" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E325111" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86781" e_stop="87303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCCTTGTAAGATGAATGTGCCAAAGCCTTTGGTTCTTGATCCTTATGCTTATGGAAACCAGAGCCGGGGAGGTCAAAACGGGGATGATGGAGCTTCAAGAAGCAATAACAAAAGTTTCAAGAACCATAGATTCCTCAGTGTTTCATCCATTGTTGCAATCTCTGCTGCAGCTGTGATCGCGGTTGGAGTAATGATAATAACCTTACTCAATGCTTCTGTTCGAAGGAGGATCACGTTCGTTGACAACGCCTTGGAGAGTATGTGCTCAAGTTCTTCTAAATCAGGGACCCTAGCCACTGGAAAACTTGTGTTATTGGACACCAAATCTTCCCCGGATTGGACTAATAGCAGTCTTGAATCAATCCTAGACAAGGCATCTCAAATCGGTGAAGGTGTCTTTGGGACTGTTTACAAAGCCCCATTGGGAGGGGAAGGAAGAATAG---T-AGCTGTCAAGAAGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTTAGAGTTTTAGC</genome_strand>
        <mrna_strand>AAGGTCCTTGTTAGATGAATGTGCCAAAGCCTTTGGTTCGTGATCCTTATGCTTATGGAAACCACAGCCGGGGAGGTCAAAACGGGGATGATGGAGCTTCAAGAAGCAATAACAAAAGTTTCAAGAACCATAGATTCCTCAGTGTTTCATCCATTGTTGCAATCTCTGCTGCAGCTGTGATCGCGGTTGGAGTAATGATAATAACCTTACTCAATGCTTCTGTTCGAAGGAGGATCACGTTCGTTGACAACGCCTTGGAGAGTATGTGCTCAAGTTCTTCTAAATCAGGGACCCTAGCCACTGGAAAACTTGTGTTATTGGACACCAAATCTTCCCCGGATTGGACTAATAGCAGTCTTGAATCAATCCTAGACAAGGCATCTCAAATCGGTGAAGGTGTCTTTGGGACTGTTTACAAAGCCCCATTGGGAGGGGAAGGAAGAATAGTTTTAAACCTGCAAGAAGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTTAGAGTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347721" ref_strand="+" ref_description="SGN-E347721 [cTOF-26-M21]">
      <seq>gatactcaatgatcatgtgagagttttgcttgagcaaggcaatgtgttggagtgtgttgatccaactatgaatacttatcctgaagaggaagttttgcctgttctgaagttggcattggtgtgcacttctcaaataccatcaagtaggccttcaatggctgaagtggttcaaatcttgcaggtcatcaaaacacctgttcctcaaagaatggaagtatactaaaacttgttacaaacttgatgaatttccctttctctttgactttctatcatatcctattgttgttatcttaacctcctaatctgatgtttttggactagatagtgatagagagagttttgtacttctctgtcatttgatgaaatatatgagaggttggttcannnaanaaaaaaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="87499" stop="88482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87799" g_stop="88173" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-E347721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87799" e_stop="88173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</genome_strand>
        <mrna_strand>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553141" ref_strand="+" ref_description="SGN-E553141 [cTSB-1-M24]">
      <seq>ggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaactttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacagagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtgtggaaatggaagattaaaaatctctcaattaccctcattaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="89708" stop="4924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89408" g_stop="89307" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89306" i_stop="89199" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89198" g_stop="88850" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="451" r_length="349" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88849" i_stop="88219" i_length="631">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88218" g_stop="88197" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="473" r_length="22" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E553141" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89408" e_stop="89307"/>
          <exon e_start="89198" e_stop="88850"/>
          <exon e_start="88218" e_stop="88197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAATGCTCTGAGTAAAGAAGAGTGTTTTATATCTCATATGTTTTAAGCTTGCTTGGTCAAGTTTTTAAAATCCGTTTATTTTAGCAAGTTCTCTCTCGAAAATTACTTCCGCGGAGAAGTTATTTATGTTGGAATAATCAAATTTAAAATAACCGTTCGATCAGAAATTTTGAAGTGAAAAGAGAAGCTTGTTCTATTTATTTTTTTGTGTGTATTACCACGTTATAACTGTATTCAAAATTGTGATGTCTTGGCAGTAGTGTGTATATATATATATCAATCACATGGAAAACATACTAACTTATACATATTATAATAGTCAATGAATGATTATGACACCCAAATCTCAAAGTTTTGTTCTGCTAACAGCCAAGAGAATATAAAATCTACGTTCTTGGTGATTTCTGTCAAAGGCTTTAGGCTCAAACAATAAGGGGTGGAGCTGGGTGGTTCATTGGGATTTTATATTAATATATGATTAGTATTATTGTTATGCATAGTAGGTATTGAATTCACTTGGTTTATTCGATGTGTGTACTTCTATATATTTTGAATCCCGCAAGTGAAAGTTTGACTCTGCCATTACAAACAACCACACACACAAGTATATACTTCCAAAACATAAATGAAGTGAGAATGCATAAAAGAAGAACAAAC</genome_strand>
        <mrna_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696207" ref_strand="+" ref_description="SGN-E696207 [LH_Ea08I13](-)">
      <seq>gattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaacttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttctttctttaatttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacaaagaaggaatagggatatgtgtatcgatgaccttattgttttttgatcgattgtttaagatggaagattaaaaatctctcaattaccctcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="91000" stop="88551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90700" g_stop="90654" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90653" i_stop="90539" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90538" g_stop="90490" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="96" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90489" i_stop="90055" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90054" g_stop="89983" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="168" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89982" i_stop="89898" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89897" g_stop="89796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="270" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89795" i_stop="89716" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89715" g_stop="89648" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="338" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89647" i_stop="89460" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89459" g_stop="89307" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="491" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89306" i_stop="89199" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89198" g_stop="88850" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="846" r_length="355" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E696207" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90700" e_stop="90654"/>
          <exon e_start="90538" e_stop="90490"/>
          <exon e_start="90054" e_stop="89983"/>
          <exon e_start="89897" e_stop="89796"/>
          <exon e_start="89715" e_stop="89648"/>
          <exon e_start="89459" e_stop="89307"/>
          <exon e_start="89198" e_stop="88850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTG--------TCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAAC-TTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTCTTTCTTTAATTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAAAGAAGGAATAGGGATATGTGTATCGATGACCTTATTGTTTTTTGATCGATTGT-TTAAGATGGAAGATTAAAAATCTCTCAATTACCCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692367" ref_strand="+" ref_description="SGN-E692367 [LH_Ea08I13]">
      <seq>tattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaacttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttctttctttaatttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacaaagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtctggaaatggaagattaaaaatctctcaattaccctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="90999" stop="88551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90700" g_stop="90654" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90653" i_stop="90539" i_length="115">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90538" g_stop="90490" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="96" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90489" i_stop="90055" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90054" g_stop="89983" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="168" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89982" i_stop="89898" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89897" g_stop="89796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="270" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89795" i_stop="89716" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89715" g_stop="89648" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="338" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89647" i_stop="89460" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89459" g_stop="89307" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="491" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89306" i_stop="89199" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89198" g_stop="88850" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="847" r_length="356" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E692367" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90700" e_stop="90654"/>
          <exon e_start="90538" e_stop="90490"/>
          <exon e_start="90054" e_stop="89983"/>
          <exon e_start="89897" e_stop="89796"/>
          <exon e_start="89715" e_stop="89648"/>
          <exon e_start="89459" e_stop="89307"/>
          <exon e_start="89198" e_stop="88850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTG--------TCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>TATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAAC-TTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTCTTTCTTTAATTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAAAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTCTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553967" ref_strand="+" ref_description="SGN-E553967 [cTSC-2-M24]">
      <seq>ggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaactttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacagagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtgtggaaatggaagattaaaaatctctcaattaccctcattcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="89708" stop="88551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89408" g_stop="89307" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89306" i_stop="89199" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89198" g_stop="88850" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="451" r_length="349" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E553967" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89408" e_stop="89307"/>
          <exon e_start="89198" e_stop="88850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238812" ref_strand="+" ref_description="SGN-E238812 [cLEL-9-N13](-)">
      <seq>ggcacgagctacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaactttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccccagagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtgtggaaatggaagattaaaaatctctcaattaccctccaaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="89480" stop="88556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89182" g_stop="88850" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="350"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E238812" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89182" e_stop="88850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GGCACGAG-CTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCCCAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTC-CAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727526" ref_strand="+" ref_description="SGN-E727526 [LA14DH02]">
      <seq>agacagtggaactgatagagaccttcttgaattaccaggagaatataaaacgttgtgtctgcataatctatgatccttctagatccaaccaaggtgtcttatctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattaatgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcagattactgcaaccagattaatggagttgcgggacaaagcctcactagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgcctttttttcaactatactgatgtgagagggaaagacaatgacctttatctctgttacgtgtctttaggttttgcttttacattcttctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="91104" stop="88706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90787" g_stop="90654" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="172" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90653" i_stop="90539" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90538" g_stop="90490" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="221" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90489" i_stop="90055" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90054" g_stop="89983" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="293" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89982" i_stop="89898" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89897" g_stop="89796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="395" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89795" i_stop="89716" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89715" g_stop="89648" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="463" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89647" i_stop="89460" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89459" g_stop="89307" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="616" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89306" i_stop="89199" i_length="108">
            <donor d_prob="0.899" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89198" g_stop="89006" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="808" r_length="192" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E727526" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90787" e_stop="90654"/>
          <exon e_start="90538" e_stop="90490"/>
          <exon e_start="90054" e_stop="89983"/>
          <exon e_start="89897" e_stop="89796"/>
          <exon e_start="89715" e_stop="89648"/>
          <exon e_start="89459" e_stop="89307"/>
          <exon e_start="89198" e_stop="89006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGAT</genome_strand>
        <mrna_strand>GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTATCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAATGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAGATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCACTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCC-TTTTTTTCAACTATACTGATGTGAGAGGGAAAGACAATGACCTTTATCTCTGTTACGTGTCTTTAGGTTTTGCTTTTACATTCTTCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243251" ref_strand="+" ref_description="SGN-E243251 [cLEE-2-F18]">
      <seq>tttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcaaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="90840" stop="88834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90667" g_stop="90654" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90653" i_stop="90539" i_length="115">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90538" g_stop="90490" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="63" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90489" i_stop="90055" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90054" g_stop="89983" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="135" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89982" i_stop="89898" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89897" g_stop="89796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="237" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89795" i_stop="89716" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89715" g_stop="89648" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="305" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89647" i_stop="89460" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89459" g_stop="89307" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="458" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89306" i_stop="89199" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89198" g_stop="89134" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="523" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-E243251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90667" e_stop="90654"/>
          <exon e_start="90538" e_stop="90490"/>
          <exon e_start="90054" e_stop="89983"/>
          <exon e_start="89897" e_stop="89796"/>
          <exon e_start="89715" e_stop="89648"/>
          <exon e_start="89459" e_stop="89307"/>
          <exon e_start="89198" e_stop="89134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTT</genome_strand>
        <mrna_strand>TTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>123</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7539" PGL_stop="5224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7529" e_stop="6707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7529" e_stop="6707" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7529" stop="6770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7528" stop="6752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7528" stop="6967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7443" stop="6707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7404" stop="6823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAGATATGCTTCAGGATAATTTAATGCTATATAGTATTTTTCTTTTAA</gDNA_template>
            <first_frame> H  I  I  F  F  W  F  F  A  F  *  F  S  L  C  A  S  L  D  L  S  K  V  L  S  L  F  F  L  S  F  Q  C  K  L  V  F  L  M  F  H  Y  N  L  *  H  I  *  *  L  Y  L  V  R  *  N  C  L  I  L  N  L  C  N  K  Y  R  S  *  V  Y  L  D  L  D  E  *  E  Q  M  F  W  F  C  N  G  Y  L  Y  I  G  Q  I  F  L  T  L  N  Y  S  Y  Q  E  N  G  Y  *  L  S  G  R  A  E  D  P  *  L  L  C  *  M  *  G  V  S  L  F  F  Y  L  G  T  N  I  K  D  A  D  I  C  Q  I  T  H  R  P  D  H  D  T  R  C  G  N  L  *  H  H  *  *  C  E  R  Q  N  L  *  K  N  R  D  K  S  R  T  S  E  V  N  I  W  W  Q  A  T  G  K  W  Y  C  E  R  L  *  H  Q  K  R  V  H  S  S  S  C  S  S  L  A  W  C  S  Y  I  L  N  F  L  T  L  *  F  L  Y  F  M  F  K  A  F  K  S  T  Q  K  *  A  D  E  *  V  T  W  M  Y  I  C  F  I  I  V  F  T  T  T  C  L  Q  T  R  D  M  L  Q  D  N  L  M  L  Y  S  I  F  L  L  </first_frame>
            <second_frame>  T  L  Y  F  S  G  S  L  P  F  N  L  V  S  A  P  L  W  I  Y  R  R  Y  S  H  F  S  F  *  A  S  N  V  N  *  Y  S  *  C  F  I  I  T  C  N  T  Y  S  N  Y  T  W  F  D  E  I  V  *  S  *  I  Y  A  T  N  I  A  R  K  S  T  W  I  L  M  S  K  N  K  C  F  G  F  V  M  D  I  C  I  L  V  K  F  F  L  H  *  T  I  P  T  R  R  M  A  I  S  L  V  V  E  R  R  I  L  D  Y  Y  V  E  C  E  V  F  H  C  S  F  I  *  V  Q  I  *  R  M  Q  I  F  V  K  S  L  T  G  Q  T  M  T  L  D  V  E  T  S  D  T  I  D  S  V  K  D  K  I  Y  E  K  T  G  I  K  A  E  H  Q  R  L  I  F  G  G  K  Q  L  E  N  G  T  V  K  D  Y  D  I  K  R  E  S  T  L  H  L  V  L  R  L  L  G  A  A  T  S  *  I  F  L  H  Y  D  F  C  T  L  C  L  K  L  L  S  Q  L  R  N  E  Q  M  N  K  L  L  G  C  I  Y  A  S  S  L  C  L  L  L  L  V  F  K  Q  E  I  C  F  R  I  I  *  C  Y  I  V  F  F  F  * </second_frame>
            <third_frame>   H  Y  I  F  L  V  L  C  L  L  I  *  S  L  R  L  F  G  F  I  E  G  T  L  T  F  L  F  E  L  P  M  *  I  S  I  L  D  V  S  L  *  L  V  T  H  I  V  I  I  L  G  S  M  K  L  F  D  L  K  F  M  Q  Q  I  S  L  V  S  L  L  G  S  *  *  V  R  T  N  V  L  V  L  *  W  I  F  V  Y  W  S  N  F  S  Y  I  E  L  F  L  P  G  E  W  L  L  A  *  W  *  S  G  G  S  L  I  I  M  L  N  V  R  C  F  I  V  L  L  F  R  Y  K  Y  K  G  C  R  Y  L  S  N  H  S  Q  A  R  P  *  H  *  M  W  K  P  L  T  P  L  I  V  *  K  T  K  S  M  K  K  Q  G  *  K  Q  N  I  R  G  *  Y  L  V  A  S  N  W  K  M  V  L  *  K  I  M  T  S  K  E  S  P  L  F  I  L  F  F  A  C  L  V  Q  L  H  L  E  F  S  Y  T  M  I  F  V  L  Y  V  *  S  F  *  V  N  S  E  M  S  R  *  I  S  Y  L  D  V  Y  M  L  H  H  C  V  Y  Y  Y  L  S  S  N  K  R  Y  A  S  G  *  F  N  A  I  *  Y  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7126" stop="6887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMQIFVKSLTGQTMTLDVETSDTIDSVKDKIYEKTGIKAEHQRLIFGGKQLENGTVKDYDIKRESTLHLVLRLLGAATS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7539" e_stop="7464"/>
            <exon e_start="7138" e_stop="6798"/>
            <exon e_start="5241" e_stop="5224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7539" e_stop="7464" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7463" i_stop="7139" i_length="325"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7138" e_stop="6798" e_length="341"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6797" i_stop="5242" i_length="1556"/>
          </intron>
          <exon e_serial="3" e_score="0.944">
            <gDNA_exon_boundary e_start="5241" e_stop="5224" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7539" stop="7464"/>
              <exon start="7138" stop="6798"/>
              <exon start="5241" stop="5224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATCTTATACACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAG : GTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTAT : AAAAAAAAAAAAAAAGAA</gDNA_template>
            <first_frame> A  S  Y  T  H  Y  I  F  L  V  L  C  L  L  I  *  S  L  R  L  F  G  F  I  E   : G  T  N  I  K  D  A  D  I  C  Q  I  T  H  R  P  D  H  D  T  R  C  G  N  L  *  H  H  *  *  C  E  R  Q  N  L  *  K  N  R  D  K  S  R  T  S  E  V  N  I  W  W  Q  A  T  G  K  W  Y  C  E  R  L  *  H  Q  K  R  V  H  S  S  S  C  S  S  L  A  W  C  S  Y  I  L  N  F  L  T  L  *  F  L  Y  F  M  F  K  A  F  K  S  T  Q  K  *  A  D  E  *  V  T  W  M  Y  :  K  K  K  K  K  E </first_frame>
            <second_frame>  H  L  I  H  I  I  F  F  W  F  F  A  F  *  F  S  L  C  A  S  L  D  L  S  K  :  V  Q  I  *  R  M  Q  I  F  V  K  S  L  T  G  Q  T  M  T  L  D  V  E  T  S  D  T  I  D  S  V  K  D  K  I  Y  E  K  T  G  I  K  A  E  H  Q  R  L  I  F  G  G  K  Q  L  E  N  G  T  V  K  D  Y  D  I  K  R  E  S  T  L  H  L  V  L  R  L  L  G  A  A  T  S  *  I  F  L  H  Y  D  F  C  T  L  C  L  K  L  L  S  Q  L  R  N  E  Q  M  N  K  L  L  G  C  I :   K  K  K  K  K   </second_frame>
            <third_frame>   I  L  Y  T  L  Y  F  S  G  S  L  P  F  N  L  V  S  A  P  L  W  I  Y  R  R :   Y  K  Y  K  G  C  R  Y  L  S  N  H  S  Q  A  R  P  *  H  *  M  W  K  P  L  T  P  L  I  V  *  K  T  K  S  M  K  K  Q  G  *  K  Q  N  I  R  G  *  Y  L  V  A  S  N  W  K  M  V  L  *  K  I  M  T  S  K  E  S  P  L  F  I  L  F  F  A  C  L  V  Q  L  H  L  E  F  S  Y  T  M  I  F  V  L  Y  V  *  S  F  *  V  N  S  E  M  S  R  *  I  S  Y  L  D  V   : *  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7126" stop="6887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMQIFVKSLTGQTMTLDVETSDTIDSVKDKIYEKTGIKAEHQRLIFGGKQLENGTVKDYDIKRESTLHLVLRLLGAATS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16230" PGL_stop="14131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16212" e_stop="16096"/>
            <exon e_start="15991" e_stop="15814"/>
            <exon e_start="14896" e_stop="14604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16212" e_stop="16096" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="15814" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14896" e_stop="14604" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16212" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16211" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16211" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16210" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16210" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16210" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16209" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16206" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16199" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16199" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16198" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16196" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16187" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16181" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16146" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16111" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16105" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15944" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15892" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15842" stop="15814"/>
              <exon start="14896" stop="14618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG : GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG : TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTGGTTGTCTATATGTGA</gDNA_template>
            <first_frame> A  K  A  P  T  E  T  L  S  T  V  R  S  N  P  N  S  S  L  I  Q  Q  *  V  T  T  I  N  N  N  P  L  L  V  C  H  H  H  K  :  D  I  R  Q  K  V  T  Q  K  M  H  T  H  H  Q  G  T  H  S  R  V  T  L  N  K  V  T  H  L  K  G  T  L  H  S  M  H  L  S  M  V  L  H  L  L  I  N  N  N  S  N  L  V  L  V  S  W  K  D   : V  W  L  L  C  A  V  A  V  S  W  M  H  A  F  D  A  V  N  D  L  C  H  V  L  V  A  K  V  Y  *  T  N  S  I  I  V  *  T  F  S  F  C  V  C  L  W  C  P  V  L  S  L  I  N  N  L  I  L  N  M  T  M  H  L  V  M  V  G  E  F  K  C  L  F  A  N  L  Y  I  I  V  Q  C  K  R  F  Y  F  F  K  I  L  V  V  Y  M  * </first_frame>
            <second_frame>  Q  K  H  Q  Q  K  L  S  L  Q  L  D  P  T  Q  I  L  H  *  F  N  N  E  L  L  Q  S  T  T  T  P  C  W  C  A  T  T  T  R :   I  S  A  R  R  L  P  K  R  C  I  P  T  T  R  V  P  T  A  G  L  P  S  T  R  L  P  T  S  R  V  P  S  T  V  C  T  S  V  W  C  S  T  S  S  S  T  T  T  A  I  W  Y  W  F  H  G  R  M  :  F  G  C  S  V  L  L  L  S  L  G  C  M  L  L  M  L  *  M  I  C  A  M  C  W  W  Q  K  F  I  K  P  I  L  S  *  S  R  L  S  L  F  V  F  V  F  G  V  L  Y  C  P  *  *  I  I  *  Y  *  I  *  R  C  T  L  L  W  W  E  N  S  S  V  Y  L  P  I  Y  T  L  L  C  N  A  R  D  S  I  F  L  K  S  W  L  S  I  C   </second_frame>
            <third_frame>   K  S  T  N  R  N  S  L  Y  S  *  I  Q  P  K  F  F  I  N  S  T  M  S  Y  Y  N  Q  Q  Q  P  P  V  G  V  P  P  P  Q   : G  Y  P  P  E  G  Y  P  K  D  A  Y  P  P  P  G  Y  P  Q  Q  G  Y  P  Q  Q  G  Y  P  P  Q  G  Y  P  P  Q  Y  A  P  Q  Y  G  A  P  P  P  H  Q  Q  Q  Q  Q  S  G  T  G  F  M  E  G  C :   L  A  A  L  C  C  C  C  L  L  D  A  C  F  *  C  C  K  *  S  V  P  C  V  G  G  K  S  L  L  N  Q  F  Y  H  S  L  D  F  L  F  L  C  L  S  L  V  S  C  T  V  L  D  K  *  F  D  I  K  Y  D  D  A  P  C  Y  G  G  R  I  Q  V  S  I  C  Q  F  I  H  Y  C  A  M  Q  E  I  L  F  F  *  N  L  G  C  L  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16143" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTINNNPLLVCHHHKDIRQKVTQKMHTHHQGTHSRVTLNKVTHLKGTLHSMHLSMVLHLLINNNSNLVLVSWKDVWLLCAVAVSWMHAFDAVNDLCHVLVAKVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16177" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQPKFFINSTMSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPQQGYPQQGYPPQGYPPQYAPQYGAPPPHQQQQQSGTGFMEGCLAALCCCCLLDACF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16154" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNELLQSTTTPCWCATTTRISARRLPKRCIPTTRVPTAGLPSTRLPTSRVPSTVCTSVWCSTSSSTTTAIWYWFHGRMFGCSVLLLSLGCMLLML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16230" e_stop="16096"/>
            <exon e_start="15991" e_stop="15814"/>
            <exon e_start="14896" e_stop="14625"/>
            <exon e_start="14171" e_stop="14131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="0.561"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16230" e_stop="16096" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="15814" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14896" e_stop="14625" e_length="272"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="14624" i_stop="14172" i_length="453"/>
          </intron>
          <exon e_serial="4" e_score="0.561">
            <gDNA_exon_boundary e_start="14171" e_stop="14131" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16230" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
              <exon start="14171" stop="14131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16212" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16211" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16210" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16210" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16209" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16206" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16199" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16199" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16198" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16181" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16146" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16111" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16105" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15944" stop="15814"/>
              <exon start="14896" stop="14689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15892" stop="15814"/>
              <exon start="14896" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTCTTTGTGTCTAAGCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG : GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG : TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA : GTTATAAAATATAACGACAAGCAAAACTCAAAAGACCACCC</gDNA_template>
            <first_frame> I  F  L  C  V  *  A  K  A  P  T  E  T  L  S  T  V  R  S  N  P  N  S  S  L  I  Q  Q  *  V  T  T  I  N  N  N  P  L  L  V  C  H  H  H  K  :  D  I  R  Q  K  V  T  Q  K  M  H  T  H  H  Q  G  T  H  S  R  V  T  L  N  K  V  T  H  L  K  G  T  L  H  S  M  H  L  S  M  V  L  H  L  L  I  N  N  N  S  N  L  V  L  V  S  W  K  D   : V  W  L  L  C  A  V  A  V  S  W  M  H  A  F  D  A  V  N  D  L  C  H  V  L  V  A  K  V  Y  *  T  N  S  I  I  V  *  T  F  S  F  C  V  C  L  W  C  P  V  L  S  L  I  N  N  L  I  L  N  M  T  M  H  L  V  M  V  G  E  F  K  C  L  F  A  N  L  Y  I  I  V  Q  C  K  R  F  Y  F  F  K  :  V  I  K  Y  N  D  K  Q  N  S  K  D  H   </first_frame>
            <second_frame>  S  F  F  V  S  K  Q  K  H  Q  Q  K  L  S  L  Q  L  D  P  T  Q  I  L  H  *  F  N  N  E  L  L  Q  S  T  T  T  P  C  W  C  A  T  T  T  R :   I  S  A  R  R  L  P  K  R  C  I  P  T  T  R  V  P  T  A  G  L  P  S  T  R  L  P  T  S  R  V  P  S  T  V  C  T  S  V  W  C  S  T  S  S  S  T  T  T  A  I  W  Y  W  F  H  G  R  M  :  F  G  C  S  V  L  L  L  S  L  G  C  M  L  L  M  L  *  M  I  C  A  M  C  W  W  Q  K  F  I  K  P  I  L  S  *  S  R  L  S  L  F  V  F  V  F  G  V  L  Y  C  P  *  *  I  I  *  Y  *  I  *  R  C  T  L  L  W  W  E  N  S  S  V  Y  L  P  I  Y  T  L  L  C  N  A  R  D  S  I  F  L  K :   L  *  N  I  T  T  S  K  T  Q  K  T  T  </second_frame>
            <third_frame>   L  S  L  C  L  S  K  S  T  N  R  N  S  L  Y  S  *  I  Q  P  K  F  F  I  N  S  T  M  S  Y  Y  N  Q  Q  Q  P  P  V  G  V  P  P  P  Q   : G  Y  P  P  E  G  Y  P  K  D  A  Y  P  P  P  G  Y  P  Q  Q  G  Y  P  Q  Q  G  Y  P  P  Q  G  Y  P  P  Q  Y  A  P  Q  Y  G  A  P  P  P  H  Q  Q  Q  Q  Q  S  G  T  G  F  M  E  G  C :   L  A  A  L  C  C  C  C  L  L  D  A  C  F  *  C  C  K  *  S  V  P  C  V  G  G  K  S  L  L  N  Q  F  Y  H  S  L  D  F  L  F  L  C  L  S  L  V  S  C  T  V  L  D  K  *  F  D  I  K  Y  D  D  A  P  C  Y  G  G  R  I  Q  V  S  I  C  Q  F  I  H  Y  C  A  M  Q  E  I  L  F  F  *   : S  Y  K  I  *  R  Q  A  K  L  K  R  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16143" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTINNNPLLVCHHHKDIRQKVTQKMHTHHQGTHSRVTLNKVTHLKGTLHSMHLSMVLHLLINNNSNLVLVSWKDVWLLCAVAVSWMHAFDAVNDLCHVLVAKVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16177" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQPKFFINSTMSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPQQGYPQQGYPPQGYPPQYAPQYGAPPPHQQQQQSGTGFMEGCLAALCCCCLLDACF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16154" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNELLQSTTTPCWCATTTRISARRLPKRCIPTTRVPTAGLPSTRLPTSRVPSTVCTSVWCSTSSSTTTAIWYWFHGRMFGCSVLLLSLGCMLLML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14783" stop="14625"/>
                    <exon start="14171" stop="14133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFSFCVCLWCPVLSLINNLILNMTMHLVMVGEFKCLFANLYIIVQCKRFYFFKVIKYNDKQNSKDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16201" e_stop="16096"/>
            <exon e_start="15991" e_stop="14625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16201" e_stop="16096" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="14625" e_length="1367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16201" stop="16096"/>
              <exon start="15991" stop="15392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16200" stop="16096"/>
              <exon start="15991" stop="15255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16200" stop="16096"/>
              <exon start="15991" stop="15397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16200" stop="16096"/>
              <exon start="15991" stop="15718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15397" stop="14686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15354" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG : GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</gDNA_template>
            <first_frame> N  R  N  S  L  Y  S  *  I  Q  P  K  F  F  I  N  S  T  M  S  Y  Y  N  Q  Q  Q  P  P  V  G  V  P  P  P  Q   : G  Y  P  P  E  G  Y  P  K  D  A  Y  P  P  P  G  Y  P  Q  Q  G  Y  P  Q  Q  G  Y  P  P  Q  G  Y  P  P  Q  Y  A  P  Q  Y  G  A  P  P  P  H  Q  Q  Q  Q  Q  S  G  T  G  F  M  E  G  W  Y  E  P  *  R  L  N  F  Y  V  H  M  L  *  F  S  Y  S  N  L  Y  D  F  V  *  E  R  S  V  L  I  L  V  F  C  R  A  V  E  E  I  V  Y  L  S  C  L  L  L  C  V  C  F  L  L  I  W  C  V  L  S  K  H  D  F  S  N  Y  Y  W  S  V  *  C  L  L  C  E  H  L  Y  L  I  T  M  V  L  D  E  F  W  T  R  T  R  R  G  P  Y  H  L  Y  V  *  L  N  I  N  A  S  R  R  D  N  *  N  A  *  M  I  L  Y  V  Q  T  *  S  R  P  C  H  T  F  D  F  I  S  D  C  *  N  R  A  P  I  I  L  Q  T  G  R  G  C  M  D  *  T  *  L  V  L  L  C  L  *  L  *  V  F  H  C  C  C  C  N  K  T  I  M  T  S  Y  Q  R  N  L  H  C  H  V  N  C  F  F  V  V  I  D  Y  G  S  I  L  V  D  A  P  F  H  C  K  I  S  S  *  L  I  F  Q  N  N  H  I  I  V  I  L  I  T  R  L  S  Y  R  S  A  S  E  P  I  R  Q  W  T  W  S  W  L  P  *  I  F  I  E  Y  S  G  G  L  S  H  F  N  S  F  V  I  F  C  F  R  R  S  F  F  L  V  A  S  P  H  F  I  *  A  C  C  I  C  Y  F  R  W  G  T  N  H  W  L  L  Y  F  C  F  A  V  W  L  L  C  A  V  A  V  S  W  M  H  A  F  D  A  V  N  D  L  C  H  V  L  V  A  K  V  Y  *  T  N  S  I  I  V  *  T  F  S  F  C  V  C  L  W  C  P  V  L  S  L  I  N  N  L  I  L  N  M  T  M  H  L  V  M  V  G  E  F  K  C  L  F  A  N  L  Y  I  I  V  Q  C  K  R  F  Y  F  F  K </first_frame>
            <second_frame>  T  E  T  L  S  T  V  R  S  N  P  N  S  S  L  I  Q  Q  *  V  T  T  I  N  N  N  P  L  L  V  C  H  H  H  K  :  D  I  R  Q  K  V  T  Q  K  M  H  T  H  H  Q  G  T  H  S  R  V  T  L  N  K  V  T  H  L  K  G  T  L  H  S  M  H  L  S  M  V  L  H  L  L  I  N  N  N  S  N  L  V  L  V  S  W  K  D  G  M  N  L  K  D  S  I  F  M  F  I  C  Y  D  S  V  T  V  I  C  M  I  L  F  E  R  D  L  Y  *  Y  W  F  F  V  E  R  L  R  R  L  F  I  C  L  V  C  Y  Y  V  C  V  S  C  *  F  G  V  S  C  Q  N  M  I  S  R  I  I  I  G  L  F  D  V  Y  F  V  S  T  C  I  *  *  L  W  F  W  T  S  S  G  R  E  L  E  G  V  L  I  I  C  M  S  S  *  T  L  T  R  A  G  E  T  I  R  M  P  E  *  F  S  M  C  K  H  S  P  G  L  A  T  P  L  I  L  S  L  T  A  E  I  A  P  L  S  Y  F  R  L  E  G  G  A  W  T  R  H  N  L  C  C  F  V  Y  S  Y  R  F  S  T  V  A  A  A  I  R  Q  *  *  P  L  I  K  E  I  Y  T  V  T  L  I  V  S  S  L  *  *  T  M  G  V  S  L  L  M  L  H  S  T  V  R  *  V  V  N  *  S  F  K  T  I  T  *  L  S  Y  *  S  H  V  *  V  I  A  V  P  V  N  Q  L  D  N  G  R  G  L  G  Y  P  K  F  S  *  N  I  V  V  V  F  H  I  S  T  A  L  *  F  S  V  L  G  V  P  S  F  L  *  P  L  L  I  L  F  E  L  A  V  F  V  I  S  G  G  G  L  I  I  G  C  Y  I  F  V  L  Q  F  G  C  S  V  L  L  L  S  L  G  C  M  L  L  M  L  *  M  I  C  A  M  C  W  W  Q  K  F  I  K  P  I  L  S  *  S  R  L  S  L  F  V  F  V  F  G  V  L  Y  C  P  *  *  I  I  *  Y  *  I  *  R  C  T  L  L  W  W  E  N  S  S  V  Y  L  P  I  Y  T  L  L  C  N  A  R  D  S  I  F  L   </second_frame>
            <third_frame>   Q  K  L  S  L  Q  L  D  P  T  Q  I  L  H  *  F  N  N  E  L  L  Q  S  T  T  T  P  C  W  C  A  T  T  T  R :   I  S  A  R  R  L  P  K  R  C  I  P  T  T  R  V  P  T  A  G  L  P  S  T  R  L  P  T  S  R  V  P  S  T  V  C  T  S  V  W  C  S  T  S  S  S  T  T  T  A  I  W  Y  W  F  H  G  R  M  V  *  T  L  K  T  Q  F  L  C  S  Y  V  M  I  Q  L  Q  *  F  V  *  F  C  L  R  E  I  C  I  D  I  G  F  L  *  S  G  *  G  D  C  L  S  V  L  S  V  T  M  C  V  F  L  V  D  L  V  C  L  V  K  T  *  F  L  E  L  L  L  V  C  L  M  F  T  L  *  A  L  V  F  N  N  Y  G  S  G  R  V  L  D  A  N  *  K  G  S  L  S  F  V  C  L  V  E  H  *  R  E  Q  E  R  Q  L  E  C  L  N  D  S  L  C  A  N  I  V  Q  A  L  P  H  L  *  F  Y  L  *  L  L  K  S  R  P  Y  H  T  S  D  W  K  G  V  H  G  L  D  I  T  C  V  A  L  S  I  A  I  G  F  P  L  L  L  L  Q  *  D  N  N  D  L  L  S  K  K  S  T  L  S  R  *  L  F  L  R  C  N  R  L  W  E  Y  P  C  *  C  S  I  P  L  *  D  K  *  L  T  D  L  S  K  Q  S  H  N  C  H  I  N  H  T  F  K  L  S  Q  C  Q  *  T  N  *  T  M  D  V  V  L  A  T  L  N  F  H  R  I  *  W  W  S  F  T  F  Q  Q  L  C  D  F  L  F  *  A  F  L  L  S  C  S  L  S  S  F  Y  L  S  L  L  Y  L  L  F  P  V  G  D  *  S  L  V  V  I  F  L  F  C  S  L  A  A  L  C  C  C  C  L  L  D  A  C  F  *  C  C  K  *  S  V  P  C  V  G  G  K  S  L  L  N  Q  F  Y  H  S  L  D  F  L  F  L  C  L  S  L  V  S  C  T  V  L  D  K  *  F  D  I  K  Y  D  D  A  P  C  Y  G  G  R  I  Q  V  S  I  C  Q  F  I  H  Y  C  A  M  Q  E  I  L  F  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16143" stop="16096"/>
                    <exon start="15991" stop="15722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTINNNPLLVCHHHKDIRQKVTQKMHTHHQGTHSRVTLNKVTHLKGTLHSMHLSMVLHLLINNNSNLVLVSWKDGMNLKDSIFMFICYDSVTVICMILFERDLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16177" stop="16096"/>
                    <exon start="15991" stop="15801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQPKFFINSTMSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPQQGYPQQGYPPQGYPPQYAPQYGAPPPHQQQQQSGTGFMEGWYEP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16154" stop="16096"/>
                    <exon start="15991" stop="15808"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNELLQSTTTPCWCATTTRISARRLPKRCIPTTRVPTAGLPSTRLPTSRVPSTVCTSVWCSTSSSTTTAIWYWFHGRMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21776" PGL_stop="20796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21776" e_stop="21743"/>
            <exon e_start="21381" e_stop="20796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.121" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21776" e_stop="21743" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.121">
            <gDNA_intron_boundary i_start="21742" i_stop="21382" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="21381" e_stop="20796" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21776" stop="21743"/>
              <exon start="21381" stop="20796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21776" stop="21743"/>
              <exon start="21381" stop="20858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21775" stop="21743"/>
              <exon start="21381" stop="21023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAG : ACGGTAGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCATTACTATGTACAGTTACACCTTGAGATTGAACTTTGTTTCTGGTTATATACAATCTCTCTCATGTACCATTTTGC</gDNA_template>
            <first_frame> R  W  F  T  C  *  F  P  Q  W  K   : D  G  S  F  N  R  W  S  F  R  L  L  F  C  L  C  V  A  S  R  W  A  Y  I  C  H  W  E  S  R  *  D  M  S  N  L  G  L  E  K  L  I  L  V  Y  S  H  S  E  G  K  H  R  C  C  S  I  Y  P  F  L  I  R  W  T  V  P  C  C  G  *  T  C  R  F  C  P  Y  L  Q  Y  Q  V  R  L  Q  E  T  S  G  N  *  S  F  W  *  D  I  R  G  I  S  E  P  R  R  R  I  S  L  H  W  Y  L  G  S  N  I  W  K  L  A  R  I  Q  Q  K  A  *  L  *  I  S  *  F  V  R  V  I  F  N  P  R  V  L  Q  F  I  H  I  E  S  Q  Y  F  A  Q  I  R  P  R  L  F  Y  I  S  S  *  S  W  H  Y  Y  V  Q  L  H  L  E  I  E  L  C  F  W  L  Y  T  I  S  L  M  Y  H  F   </first_frame>
            <second_frame>  D  G  L  L  V  D  S  R  N  G  K  :  T  V  A  S  I  V  G  H  L  D  Y  S  F  A  C  A  W  H  P  D  G  R  T  F  A  T  G  N  Q  D  K  T  C  R  I  W  D  L  R  N  L  S  S  S  T  A  I  L  K  G  N  I  G  A  A  R  S  I  R  F  S  S  D  G  Q  F  L  V  V  A  E  P  A  D  F  V  H  I  Y  N  T  K  S  D  Y  K  K  R  Q  E  I  D  L  F  G  E  I  S  G  V  S  L  S  P  D  D  E  S  L  Y  I  G  I  W  D  R  T  Y  G  S  L  L  E  Y  N  R  R  H  S  C  R  Y  L  D  S  F  V  *  S  S  T  Q  G  F  Y  S  S  F  T  L  S  P  N  I  L  H  K  F  V  P  D  Y  F  I  S  V  L  D  L  G  I  T  M  Y  S  Y  T  L  R  L  N  F  V  S  G  Y  I  Q  S  L  S  C  T  I  L  </second_frame>
            <third_frame>   M  V  Y  L  L  I  P  A  M  E  R :   R  *  L  Q  S  L  V  I  *  T  T  L  L  L  V  R  G  I  Q  M  G  V  H  L  P  L  G  I  K  I  R  H  V  E  F  G  T  *  E  T  Y  P  R  L  Q  P  F  *  R  E  T  S  V  L  L  D  L  S  V  S  H  P  M  D  S  S  L  L  W  L  N  L  Q  I  L  S  I  S  T  I  P  S  Q  T  T  R  N  V  R  K  L  I  F  L  V  R  Y  Q  G  Y  L  *  A  Q  T  T  N  L  F  T  L  V  S  G  I  E  H  M  E  A  C  *  N  T  T  E  G  I  V  V  D  I  L  I  R  S  C  N  L  Q  P  K  G  S  T  V  H  S  H  *  V  P  I  F  C  T  N  S  S  P  I  I  L  Y  Q  F  L  I  L  A  L  L  C  T  V  T  P  *  D  *  T  L  F  L  V  I  Y  N  L  S  H  V  P  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21775" stop="21743"/>
                    <exon start="21381" stop="20968"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGLLVDSRNGKTVASIVGHLDYSFACAWHPDGRTFATGNQDKTCRIWDLRNLSSSTAILKGNIGAARSIRFSSDGQFLVVAEPADFVHIYNTKSDYKKRQEIDLFGEISGVSLSPDDESLYIGIWDRTYGSLLEYNRRHSCRYLDSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23400" PGL_stop="22293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23400" e_stop="22293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="23400" e_stop="22293" e_length="1108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23400" stop="22697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22844" stop="22293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22844" stop="22498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGTTTAACTTTCTGCATACTGTTCACTAAGCTCTCAAACCATCTTGAATTCCTCTCTTTCCAAATAGCCCACCATATAACACTTCTTTGCTTTTTTTGATTTCCTATCATTAGTTACTGAGTAGTTTTGGTTGTCCGTGAAGTATAATATACTTGCTTTTTCATACAAGAGAACTGGCAGGTTGTGGAGAAGTTCCAAACTGGTCATTGTCATTATTCTCCTCCTCATCATCAACATTCTCATGTATTGGGTGTTAGTGGGATAGAATGGTTTCATGAATTTCTAGTGTAAGTTCTTTCTTTAATCAAATGAAATTCTAATATGAGGCTTTAGATGGACTGTAGTTTTCTGATTTAAATTGAGGCTGGAAGTGGTTATTTAATAATTCTTTCTTGTACGACCTTGTATTATGACATCCCAACAAGGGGCTTTTAGTATCTGAGTGACCTCAATGGGTTTTATACATTCAGGTTGAGTTTGGTGGTAGATTAGATAGGCTAGATGAAGGCCAAGCGTTTGAAGATAAATCCCATCATTCTCATTTGTTTCATCTTAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGTTGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGTTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGTTGTTGTTGTAGTAGTTTTTGTACTTCATATAAGTAGTTACAACACTTTTGGATCTATATTTCCTCTTATTTGAAGTTGAGATCAATCATCAACGAGCTGCCTCTCTCTGGACTTCATTTCTCTTTTAAGATTTATAAGCCAACATCATATGTTGATTCAATCAACCAGGTATTCATATCATAAATAGAAAGCTTTTTTTTTTTTT</gDNA_template>
            <first_frame> F  S  L  T  F  C  I  L  F  T  K  L  S  N  H  L  E  F  L  S  F  Q  I  A  H  H  I  T  L  L  C  F  F  *  F  P  I  I  S  Y  *  V  V  L  V  V  R  E  V  *  Y  T  C  F  F  I  Q  E  N  W  Q  V  V  E  K  F  Q  T  G  H  C  H  Y  S  P  P  H  H  Q  H  S  H  V  L  G  V  S  G  I  E  W  F  H  E  F  L  V  *  V  L  S  L  I  K  *  N  S  N  M  R  L  *  M  D  C  S  F  L  I  *  I  E  A  G  S  G  Y  L  I  I  L  S  C  T  T  L  Y  Y  D  I  P  T  R  G  F  *  Y  L  S  D  L  N  G  F  Y  T  F  R  L  S  L  V  V  D  *  I  G  *  M  K  A  K  R  L  K  I  N  P  I  I  L  I  C  F  I  L  E  D  Q  F  M  G  G  *  I  F  E  I  W  Q  C  H  R  D  L  Q  *  V  Q  L  L  W  L  M  V  Q  L  L  I  *  *  I  A  N  M  I  A  F  F  A  L  T  F  W  N  T  P  E  I  L  F  Y  A  Q  F  H  V  H  I  L  N  L  Y  A  A  H  G  C  I  C  *  S  T  I  *  L  R  N  L  F  L  A  S  N  Y  F  V  V  L  Q  W  V  I  E  V  F  S  F  A  *  S  Q  S  S  S  T  H  I  V  V  C  C  C  C  S  S  F  C  T  S  Y  K  *  L  Q  H  F  W  I  Y  I  S  S  Y  L  K  L  R  S  I  I  N  E  L  P  L  S  G  L  H  F  S  F  K  I  Y  K  P  T  S  Y  V  D  S  I  N  Q  V  F  I  S  *  I  E  S  F  F  F  F  </first_frame>
            <second_frame>  S  V  *  L  S  A  Y  C  S  L  S  S  Q  T  I  L  N  S  S  L  S  K  *  P  T  I  *  H  F  F  A  F  F  D  F  L  S  L  V  T  E  *  F  W  L  S  V  K  Y  N  I  L  A  F  S  Y  K  R  T  G  R  L  W  R  S  S  K  L  V  I  V  I  I  L  L  L  I  I  N  I  L  M  Y  W  V  L  V  G  *  N  G  F  M  N  F  *  C  K  F  F  L  *  S  N  E  I  L  I  *  G  F  R  W  T  V  V  F  *  F  K  L  R  L  E  V  V  I  *  *  F  F  L  V  R  P  C  I  M  T  S  Q  Q  G  A  F  S  I  *  V  T  S  M  G  F  I  H  S  G  *  V  W  W  *  I  R  *  A  R  *  R  P  S  V  *  R  *  I  P  S  F  S  F  V  S  S  *  R  T  N  L  W  G  V  E  Y  L  R  F  G  S  A  I  E  I  C  N  E  Y  N  C  C  G  *  W  C  N  F  L  Y  S  R  L  P  T  *  L  P  F  L  L  *  H  S  G  I  P  L  R  Y  S  F  M  L  N  F  M  F  I  F  L  T  C  M  L  L  M  V  V  F  V  D  L  L  F  N  F  G  T  C  F  *  R  A  I  I  L  S  C  F  N  G  L  L  K  F  F  H  L  L  E  V  S  H  H  Q  R  T  *  W  Y  V  V  V  V  V  V  F  V  L  H  I  S  S  Y  N  T  F  G  S  I  F  P  L  I  *  S  *  D  Q  S  S  T  S  C  L  S  L  D  F  I  S  L  L  R  F  I  S  Q  H  H  M  L  I  Q  S  T  R  Y  S  Y  H  K  *  K  A  F  F  F  F </second_frame>
            <third_frame>   Q  F  N  F  L  H  T  V  H  *  A  L  K  P  S  *  I  P  L  F  P  N  S  P  P  Y  N  T  S  L  L  F  L  I  S  Y  H  *  L  L  S  S  F  G  C  P  *  S  I  I  Y  L  L  F  H  T  R  E  L  A  G  C  G  E  V  P  N  W  S  L  S  L  F  S  S  S  S  S  T  F  S  C  I  G  C  *  W  D  R  M  V  S  *  I  S  S  V  S  S  F  F  N  Q  M  K  F  *  Y  E  A  L  D  G  L  *  F  S  D  L  N  *  G  W  K  W  L  F  N  N  S  F  L  Y  D  L  V  L  *  H  P  N  K  G  L  L  V  S  E  *  P  Q  W  V  L  Y  I  Q  V  E  F  G  G  R  L  D  R  L  D  E  G  Q  A  F  E  D  K  S  H  H  S  H  L  F  H  L  R  G  P  I  Y  G  G  L  N  I  *  D  L  A  V  P  *  R  F  A  M  S  T  I  A  V  A  D  G  A  T  S  Y  I  V  D  C  Q  H  D  C  L  F  C  S  D  I  L  E  Y  P  *  D  T  L  L  C  S  I  S  C  S  Y  S  *  L  V  C  C  S  W  L  Y  L  L  I  Y  Y  L  T  S  E  L  V  S  S  E  Q  L  F  C  R  A  S  M  G  Y  *  S  F  F  I  C  L  K  S  V  I  I  N  A  H  S  G  M  L  L  L  *  *  F  L  Y  F  I  *  V  V  T  T  L  L  D  L  Y  F  L  L  F  E  V  E  I  N  H  Q  R  A  A  S  L  W  T  S  F  L  F  *  D  L  *  A  N  I  I  C  *  F  N  Q  P  G  I  H  I  I  N  R  K  L  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0017K18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27304" PGL_stop="31293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27304" e_stop="27339"/>
            <exon e_start="27480" e_stop="27599"/>
            <exon e_start="27716" e_stop="27783"/>
            <exon e_start="29478" e_stop="29586"/>
            <exon e_start="29694" e_stop="29762"/>
            <exon e_start="30219" e_stop="30276"/>
            <exon e_start="30439" e_stop="30674"/>
            <exon e_start="30757" e_stop="30808"/>
            <exon e_start="30904" e_stop="31293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27304" e_stop="27339" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27340" i_stop="27479" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27480" e_stop="27599" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27716" e_stop="27783" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29478" e_stop="29586" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29694" e_stop="29762" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30219" e_stop="30276" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.875">
            <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30439" e_stop="30674" e_length="236"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30757" e_stop="30808" e_length="52"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="30904" e_stop="31293" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27304" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27304" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27305" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27305" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27315" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27320" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27320" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27321" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27323" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27325" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27326" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27326" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27326" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27328" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27329" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27331" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27331" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27332" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27332" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27335" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27336" stop="27339"/>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280833" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27486" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27486" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27499" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27499" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27501" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27511" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27512" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27749" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29485" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29518" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29737" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30234" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30266" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30592" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30618" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30654" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283473" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30670" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30794" stop="30808"/>
              <exon start="30904" stop="31293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30807" stop="30808"/>
              <exon start="30904" stop="31239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30996" stop="31290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTCAATCTCTTTCTCTGTCCAACCGTAGCCATG : CCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG : GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC : ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG : ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG : GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA : CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG : GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG : GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCAACA</gDNA_template>
            <first_frame> P  L  N  L  F  L  C  P  T  V  A  M  :  P  Q  G  D  Y  I  E  L  H  R  K  R  F  G  R  R  P  D  H  F  E  R  K  R  K  K  D  A  R  E  V  H  K  R  S  Q  I  A  Q  K  :  A  L  G  I  K  G  K  M  F  A  K  K  R  Y  A  E  K  A  Q  M  K  K  T :   L  A  M  H  E  E  S  S  S  R  R  K  V  D  D  D  V  H  E  G  A  V  P  A  Y  L  M  D  R  E  T  T  T  R  A  K  :  I  L  S  N  T  I  K  Q  K  R  K  E  K  A  G  K  W  E  V  P  L  P  K  :  V  R  P  V  A  E  D  E  M  F  R  V  I  R  S  G  K  R  K   : T  K  Q  W  K  R  M  V  T  K  A  T  F  V  G  A  G  F  T  R  K  P  P  K  Y  E  R  F  I  R  P  S  G  L  R  F  T  K  A  H  V  T  H  P  E  L  K  C  T  F  N  L  E  I  I  G  V  K  K  N  P  N  G  P  M  Y  T  S  L  G  V  I  T  K  G  T  I  I  E  :  V  N  V  S  E  L  G  L  V  T  P  A  G  K  V  V  W   : G  K  Y  A  Q  V  T  N  N  P  E  N  D  G  C  I  N  A  V  L  L  V  *  Y  F  L  T  E  K  K  L  Y  P  F  C  L  *  I  E  C  I  I  L  C  I  A  S  V  H  C  L  M  L  V  V  T  E  L  *  N  R  R  G  E  M  K  *  *  F  V  G  T  C  N  C  T  D  D  I  S  L  V  M  L  L  A  S  M  F  I  E  F  L  E  V  E  R  S  K  *  I  H  L  P  G  K  I  K  L  F  I  R  N  V  P  K  P  F  Y  C  Y  N  H  *  I  L  K  L  I  N  </first_frame>
            <second_frame>  L  S  I  S  F  S  V  Q  P  *  P  C :   L  R  E  I  T  *  S  C  T  G  R  D  L  G  V  A  L  I  T  L  S  V  N  V  R  R  M  L  V  K  F  T  S  D  P  K  L  P  K  R :   L  W  V  S  R  V  R  C  L  L  R  S  V  M  L  R  R  P  K  *  R  K   : H  W  L  C  M  K  S  H  H  P  G  A  R  L  M  M  M  C  M  R  V  L  S  L  H  I  *  W  I  V  R  L  P  Q  E  L  R :   F  L  A  T  Q  *  S  K  R  G  K  R  K  L  E  N  G  R  C  L  C  P  R :   L  G  L  W  L  R  M  R  C  S  E  *  *  D  L  A  K  G  R  :  P  S  S  G  R  E  W  L  R  K  P  P  L  S  E  Q  G  L  P  G  N  L  Q  S  M  S  G  S  S  A  R  L  D  Y  G  L  L  K  P  T  *  H  I  L  N  L  N  V  R  S  I  L  R  S  L  G  *  R  R  I  L  M  V  Q  C  T  L  L  *  V  L  *  P  R  E  P  S  L  R :   L  M  S  A  N  L  V  L  S  L  L  L  G  K  L  Y  G  :  V  N  M  L  K  *  R  I  I  L  K  M  M  V  A  S  M  Q  F  S  *  C  S  T  F  *  Q  R  R  N  C  T  L  F  V  C  E  S  S  A  *  F  C  V  S  L  R  Y  T  A  *  C  W  L  *  Q  S  C  R  I  G  E  A  K  *  S  S  D  L  L  E  L  A  T  V  P  M  I  L  V  L  L  C  C  W  L  P  C  L  L  N  S  L  R  W  N  V  A  S  R  F  I  Y  Q  E  K  L  S  Y  S  S  E  M  S  Q  N  L  F  I  A  I  I  I  K  S  L  S  *  S  T </second_frame>
            <third_frame>   S  Q  S  L  S  L  S  N  R  S  H   : A  S  G  R  L  H  R  V  A  Q  E  E  I  W  A  S  P  *  S  L  *  A  *  T  *  E  G  C  S  *  S  S  Q  A  I  P  N  C  P  K   : G  F  G  Y  Q  G  *  D  V  C  *  E  A  L  C  *  E  G  P  N  E  E  N  :  I  G  Y  A  *  R  V  I  I  P  A  Q  G  *  *  *  C  A  *  G  C  C  P  C  I  S  D  G  S  *  D  Y  H  K  S  *   : D  S  *  Q  H  N  K  A  K  E  E  R  E  S  W  K  M  G  G  A  S  A  Q   : G  *  A  C  G  *  G  *  D  V  Q  S  D  K  I  W  Q  K  E  D :   Q  A  V  E  E  N  G  Y  E  S  H  L  C  R  S  R  V  Y  Q  E  T  S  K  V  *  A  V  H  P  P  V  W  I  T  V  Y  *  S  P  R  D  T  S  *  T  *  M  Y  V  Q  S  *  D  H  W  G  E  E  E  S  *  W  S  N  V  H  F  S  R  C  Y  N  Q  G  N  H  H  *   : G  *  C  Q  R  T  W  S  C  H  S  C  W  E  S  C  M  G :   *  I  C  S  S  D  E  *  S  *  K  *  W  L  H  Q  C  S  S  P  S  V  V  L  F  N  R  E  E  T  V  P  F  L  F  V  N  R  V  H  N  F  V  Y  R  F  G  T  L  L  D  A  G  C  D  R  V  V  E  *  E  R  R  N  E  V  V  I  C  W  N  L  Q  L  Y  R  *  Y  *  S  C  Y  A  V  G  F  H  V  Y  *  I  P  *  G  G  T  *  Q  V  D  S  F  T  R  K  N  *  V  I  H  Q  K  C  P  K  T  F  L  L  L  *  S  L  N  P  *  A  D  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27304" stop="27339"/>
                    <exon start="27480" stop="27599"/>
                    <exon start="27716" stop="27783"/>
                    <exon start="29478" stop="29586"/>
                    <exon start="29694" stop="29762"/>
                    <exon start="30219" stop="30276"/>
                    <exon start="30439" stop="30674"/>
                    <exon start="30757" stop="30808"/>
                    <exon start="30904" stop="30971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLNLFLCPTVAMPQGDYIELHRKRFGRRPDHFERKRKKDAREVHKRSQIAQKALGIKGKMFAKKRYAEKAQMKKTLAMHEESSSRRKVDDDVHEGAVPAYLMDRETTTRAKILSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGAGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27374" e_stop="27599"/>
            <exon e_start="27716" e_stop="27783"/>
            <exon e_start="29478" e_stop="29586"/>
            <exon e_start="29694" e_stop="29762"/>
            <exon e_start="30219" e_stop="30276"/>
            <exon e_start="30439" e_stop="30674"/>
            <exon e_start="30757" e_stop="30808"/>
            <exon e_start="30904" e_stop="31293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27374" e_stop="27599" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27716" e_stop="27783" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29478" e_stop="29586" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29694" e_stop="29762" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30219" e_stop="30276" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.875">
            <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30439" e_stop="30674" e_length="236"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30757" e_stop="30808" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="30904" e_stop="31293" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27374" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27374" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27479" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27480" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280833" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27486" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27486" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27499" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27499" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27501" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27511" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27512" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27749" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29485" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29518" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29737" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30234" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30266" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30592" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30618" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30654" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283473" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30670" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30794" stop="30808"/>
              <exon start="30904" stop="31293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30807" stop="30808"/>
              <exon start="30904" stop="31239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30996" stop="31290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG : GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC : ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG : ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG : GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA : CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG : GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG : GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCAACA</gDNA_template>
            <first_frame> H  E  S  Y  V  F  P  S  F  Y  D  Y  L  K  H  Y  Y  I  L  M  I  F  K  C  F  S  L  *  C  E  N  W  Q  T  T  A  S  G  R  L  H  R  V  A  Q  E  E  I  W  A  S  P  *  S  L  *  A  *  T  *  E  G  C  S  *  S  S  Q  A  I  P  N  C  P  K   : G  F  G  Y  Q  G  *  D  V  C  *  E  A  L  C  *  E  G  P  N  E  E  N  :  I  G  Y  A  *  R  V  I  I  P  A  Q  G  *  *  *  C  A  *  G  C  C  P  C  I  S  D  G  S  *  D  Y  H  K  S  *   : D  S  *  Q  H  N  K  A  K  E  E  R  E  S  W  K  M  G  G  A  S  A  Q   : G  *  A  C  G  *  G  *  D  V  Q  S  D  K  I  W  Q  K  E  D :   Q  A  V  E  E  N  G  Y  E  S  H  L  C  R  S  R  V  Y  Q  E  T  S  K  V  *  A  V  H  P  P  V  W  I  T  V  Y  *  S  P  R  D  T  S  *  T  *  M  Y  V  Q  S  *  D  H  W  G  E  E  E  S  *  W  S  N  V  H  F  S  R  C  Y  N  Q  G  N  H  H  *   : G  *  C  Q  R  T  W  S  C  H  S  C  W  E  S  C  M  G :   *  I  C  S  S  D  E  *  S  *  K  *  W  L  H  Q  C  S  S  P  S  V  V  L  F  N  R  E  E  T  V  P  F  L  F  V  N  R  V  H  N  F  V  Y  R  F  G  T  L  L  D  A  G  C  D  R  V  V  E  *  E  R  R  N  E  V  V  I  C  W  N  L  Q  L  Y  R  *  Y  *  S  C  Y  A  V  G  F  H  V  Y  *  I  P  *  G  G  T  *  Q  V  D  S  F  T  R  K  N  *  V  I  H  Q  K  C  P  K  T  F  L  L  L  *  S  L  N  P  *  A  D  Q   </first_frame>
            <second_frame>  M  N  L  M  F  F  Q  V  F  T  I  I  L  S  I  I  I  Y  *  *  F  L  N  V  F  L  C  D  V  K  I  G  K  Q  Q  P  Q  G  D  Y  I  E  L  H  R  K  R  F  G  R  R  P  D  H  F  E  R  K  R  K  K  D  A  R  E  V  H  K  R  S  Q  I  A  Q  K  :  A  L  G  I  K  G  K  M  F  A  K  K  R  Y  A  E  K  A  Q  M  K  K  T :   L  A  M  H  E  E  S  S  S  R  R  K  V  D  D  D  V  H  E  G  A  V  P  A  Y  L  M  D  R  E  T  T  T  R  A  K  :  I  L  S  N  T  I  K  Q  K  R  K  E  K  A  G  K  W  E  V  P  L  P  K  :  V  R  P  V  A  E  D  E  M  F  R  V  I  R  S  G  K  R  K   : T  K  Q  W  K  R  M  V  T  K  A  T  F  V  G  A  G  F  T  R  K  P  P  K  Y  E  R  F  I  R  P  S  G  L  R  F  T  K  A  H  V  T  H  P  E  L  K  C  T  F  N  L  E  I  I  G  V  K  K  N  P  N  G  P  M  Y  T  S  L  G  V  I  T  K  G  T  I  I  E  :  V  N  V  S  E  L  G  L  V  T  P  A  G  K  V  V  W   : G  K  Y  A  Q  V  T  N  N  P  E  N  D  G  C  I  N  A  V  L  L  V  *  Y  F  L  T  E  K  K  L  Y  P  F  C  L  *  I  E  C  I  I  L  C  I  A  S  V  H  C  L  M  L  V  V  T  E  L  *  N  R  R  G  E  M  K  *  *  F  V  G  T  C  N  C  T  D  D  I  S  L  V  M  L  L  A  S  M  F  I  E  F  L  E  V  E  R  S  K  *  I  H  L  P  G  K  I  K  L  F  I  R  N  V  P  K  P  F  Y  C  Y  N  H  *  I  L  K  L  I  N  </second_frame>
            <third_frame>   *  I  L  C  F  S  K  F  L  R  L  S  *  A  L  L  Y  T  D  D  F  *  M  F  F  F  V  M  *  K  L  A  N  N  S  L  R  E  I  T  *  S  C  T  G  R  D  L  G  V  A  L  I  T  L  S  V  N  V  R  R  M  L  V  K  F  T  S  D  P  K  L  P  K  R :   L  W  V  S  R  V  R  C  L  L  R  S  V  M  L  R  R  P  K  *  R  K   : H  W  L  C  M  K  S  H  H  P  G  A  R  L  M  M  M  C  M  R  V  L  S  L  H  I  *  W  I  V  R  L  P  Q  E  L  R :   F  L  A  T  Q  *  S  K  R  G  K  R  K  L  E  N  G  R  C  L  C  P  R :   L  G  L  W  L  R  M  R  C  S  E  *  *  D  L  A  K  G  R  :  P  S  S  G  R  E  W  L  R  K  P  P  L  S  E  Q  G  L  P  G  N  L  Q  S  M  S  G  S  S  A  R  L  D  Y  G  L  L  K  P  T  *  H  I  L  N  L  N  V  R  S  I  L  R  S  L  G  *  R  R  I  L  M  V  Q  C  T  L  L  *  V  L  *  P  R  E  P  S  L  R :   L  M  S  A  N  L  V  L  S  L  L  L  G  K  L  Y  G  :  V  N  M  L  K  *  R  I  I  L  K  M  M  V  A  S  M  Q  F  S  *  C  S  T  F  *  Q  R  R  N  C  T  L  F  V  C  E  S  S  A  *  F  C  V  S  L  R  Y  T  A  *  C  W  L  *  Q  S  C  R  I  G  E  A  K  *  S  S  D  L  L  E  L  A  T  V  P  M  I  L  V  L  L  C  C  W  L  P  C  L  L  N  S  L  R  W  N  V  A  S  R  F  I  Y  Q  E  K  L  S  Y  S  S  E  M  S  Q  N  L  F  I  A  I  I  I  K  S  L  S  *  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27435" stop="27599"/>
                    <exon start="27716" stop="27783"/>
                    <exon start="29478" stop="29586"/>
                    <exon start="29694" stop="29762"/>
                    <exon start="30219" stop="30276"/>
                    <exon start="30439" stop="30674"/>
                    <exon start="30757" stop="30808"/>
                    <exon start="30904" stop="30971"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNVFLCDVKIGKQQPQGDYIELHRKRFGRRPDHFERKRKKDAREVHKRSQIAQKALGIKGKMFAKKRYAEKAQMKKTLAMHEESSSRRKVDDDVHEGAVPAYLMDRETTTRAKILSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGAGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="30210" e_stop="30276"/>
            <exon e_start="30439" e_stop="30674"/>
            <exon e_start="30757" e_stop="30808"/>
            <exon e_start="30904" e_stop="31293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30210" e_stop="30276" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.875">
            <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30439" e_stop="30674" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30757" e_stop="30808" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="30904" e_stop="31293" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30210" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30234" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30266" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="30960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30592" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30618" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30654" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283473" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30670" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30794" stop="30808"/>
              <exon start="30904" stop="31293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30807" stop="30808"/>
              <exon start="30904" stop="31239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30996" stop="31290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA : CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG : GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG : GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCAACA</gDNA_template>
            <first_frame> H  L  Q  V  R  P  V  A  E  D  E  M  F  R  V  I  R  S  G  K  R  K   : T  K  Q  W  K  R  M  V  T  K  A  T  F  V  G  A  G  F  T  R  K  P  P  K  Y  E  R  F  I  R  P  S  G  L  R  F  T  K  A  H  V  T  H  P  E  L  K  C  T  F  N  L  E  I  I  G  V  K  K  N  P  N  G  P  M  Y  T  S  L  G  V  I  T  K  G  T  I  I  E  :  V  N  V  S  E  L  G  L  V  T  P  A  G  K  V  V  W   : G  K  Y  A  Q  V  T  N  N  P  E  N  D  G  C  I  N  A  V  L  L  V  *  Y  F  L  T  E  K  K  L  Y  P  F  C  L  *  I  E  C  I  I  L  C  I  A  S  V  H  C  L  M  L  V  V  T  E  L  *  N  R  R  G  E  M  K  *  *  F  V  G  T  C  N  C  T  D  D  I  S  L  V  M  L  L  A  S  M  F  I  E  F  L  E  V  E  R  S  K  *  I  H  L  P  G  K  I  K  L  F  I  R  N  V  P  K  P  F  Y  C  Y  N  H  *  I  L  K  L  I  N  </first_frame>
            <second_frame>  T  Y  R  L  G  L  W  L  R  M  R  C  S  E  *  *  D  L  A  K  G  R  :  P  S  S  G  R  E  W  L  R  K  P  P  L  S  E  Q  G  L  P  G  N  L  Q  S  M  S  G  S  S  A  R  L  D  Y  G  L  L  K  P  T  *  H  I  L  N  L  N  V  R  S  I  L  R  S  L  G  *  R  R  I  L  M  V  Q  C  T  L  L  *  V  L  *  P  R  E  P  S  L  R :   L  M  S  A  N  L  V  L  S  L  L  L  G  K  L  Y  G  :  V  N  M  L  K  *  R  I  I  L  K  M  M  V  A  S  M  Q  F  S  *  C  S  T  F  *  Q  R  R  N  C  T  L  F  V  C  E  S  S  A  *  F  C  V  S  L  R  Y  T  A  *  C  W  L  *  Q  S  C  R  I  G  E  A  K  *  S  S  D  L  L  E  L  A  T  V  P  M  I  L  V  L  L  C  C  W  L  P  C  L  L  N  S  L  R  W  N  V  A  S  R  F  I  Y  Q  E  K  L  S  Y  S  S  E  M  S  Q  N  L  F  I  A  I  I  I  K  S  L  S  *  S  T </second_frame>
            <third_frame>   P  T  G  *  A  C  G  *  G  *  D  V  Q  S  D  K  I  W  Q  K  E  D :   Q  A  V  E  E  N  G  Y  E  S  H  L  C  R  S  R  V  Y  Q  E  T  S  K  V  *  A  V  H  P  P  V  W  I  T  V  Y  *  S  P  R  D  T  S  *  T  *  M  Y  V  Q  S  *  D  H  W  G  E  E  E  S  *  W  S  N  V  H  F  S  R  C  Y  N  Q  G  N  H  H  *   : G  *  C  Q  R  T  W  S  C  H  S  C  W  E  S  C  M  G :   *  I  C  S  S  D  E  *  S  *  K  *  W  L  H  Q  C  S  S  P  S  V  V  L  F  N  R  E  E  T  V  P  F  L  F  V  N  R  V  H  N  F  V  Y  R  F  G  T  L  L  D  A  G  C  D  R  V  V  E  *  E  R  R  N  E  V  V  I  C  W  N  L  Q  L  Y  R  *  Y  *  S  C  Y  A  V  G  F  H  V  Y  *  I  P  *  G  G  T  *  Q  V  D  S  F  T  R  K  N  *  V  I  H  Q  K  C  P  K  T  F  L  L  L  *  S  L  N  P  *  A  D  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30210" stop="30276"/>
                    <exon start="30439" stop="30674"/>
                    <exon start="30757" stop="30808"/>
                    <exon start="30904" stop="30971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLQVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGAGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="30755" e_stop="30808"/>
            <exon e_start="30904" e_stop="31293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30755" e_stop="30808" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="30904" e_stop="31293" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30755" stop="30808"/>
              <exon start="30904" stop="31252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30794" stop="30808"/>
              <exon start="30904" stop="31293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30807" stop="30808"/>
              <exon start="30904" stop="31239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30996" stop="31290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG : GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTGATCAACA</gDNA_template>
            <first_frame> R  L  M  S  A  N  L  V  L  S  L  L  L  G  K  L  Y  G  :  V  N  M  L  K  *  R  I  I  L  K  M  M  V  A  S  M  Q  F  S  *  C  S  T  F  *  Q  R  R  N  C  T  L  F  V  C  E  S  S  A  *  F  C  V  S  L  R  Y  T  A  *  C  W  L  *  Q  S  C  R  I  G  E  A  K  *  S  S  D  L  L  E  L  A  T  V  P  M  I  L  V  L  L  C  C  W  L  P  C  L  L  N  S  L  R  W  N  V  A  S  R  F  I  Y  Q  E  K  L  S  Y  S  S  E  M  S  Q  N  L  F  I  A  I  I  I  K  S  L  S  *  S  T </first_frame>
            <second_frame>  G  *  C  Q  R  T  W  S  C  H  S  C  W  E  S  C  M  G :   *  I  C  S  S  D  E  *  S  *  K  *  W  L  H  Q  C  S  S  P  S  V  V  L  F  N  R  E  E  T  V  P  F  L  F  V  N  R  V  H  N  F  V  Y  R  F  G  T  L  L  D  A  G  C  D  R  V  V  E  *  E  R  R  N  E  V  V  I  C  W  N  L  Q  L  Y  R  *  Y  *  S  C  Y  A  V  G  F  H  V  Y  *  I  P  *  G  G  T  *  Q  V  D  S  F  T  R  K  N  *  V  I  H  Q  K  C  P  K  T  F  L  L  L  *  S  L  N  P  *  A  D  Q   </second_frame>
            <third_frame>   V  N  V  S  E  L  G  L  V  T  P  A  G  K  V  V  W   : G  K  Y  A  Q  V  T  N  N  P  E  N  D  G  C  I  N  A  V  L  L  V  *  Y  F  L  T  E  K  K  L  Y  P  F  C  L  *  I  E  C  I  I  L  C  I  A  S  V  H  C  L  M  L  V  V  T  E  L  *  N  R  R  G  E  M  K  *  *  F  V  G  T  C  N  C  T  D  D  I  S  L  V  M  L  L  A  S  M  F  I  E  F  L  E  V  E  R  S  K  *  I  H  L  P  G  K  I  K  L  F  I  R  N  V  P  K  P  F  Y  C  Y  N  H  *  I  L  K  L  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0017K18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51136" PGL_stop="48905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51136" e_stop="51027"/>
            <exon e_start="50393" e_stop="50296"/>
            <exon e_start="50203" e_stop="49956"/>
            <exon e_start="49819" e_stop="49423"/>
            <exon e_start="49345" e_stop="48985"/>
            <exon e_start="48911" e_stop="48905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.982" e_score="0.800"/>
          <exon-intron don_prob="0.916" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.984" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.398" e_score="0.997"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="51136" e_stop="51027" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51026" i_stop="50394" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50393" e_stop="50296" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.986">
            <gDNA_intron_boundary i_start="50295" i_stop="50204" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50203" e_stop="49956" e_length="248"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49955" i_stop="49820" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="49819" e_stop="49423" e_length="397"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.984">
            <gDNA_intron_boundary i_start="49422" i_stop="49346" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="49345" e_stop="48985" e_length="361"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.398">
            <gDNA_intron_boundary i_start="48984" i_stop="48912" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="48911" e_stop="48905" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51136" stop="51027"/>
              <exon start="50393" stop="50296"/>
              <exon start="50203" stop="49956"/>
              <exon start="49819" stop="49430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49734" stop="49423"/>
              <exon start="49345" stop="48985"/>
              <exon start="48911" stop="48905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGATTTCTTGCCTCGTTGCTCGGAGTAGGATGTGAGTGTGAGGGATATGGTGTGCGAATAGTAGGACATTCCCTTGGAGGAGCGATTGCTGCAGTATTGGGAATGAAG : CTACGCAAACGGTACCCAGATTTACATGTATACACATATGGTGCTCTCCCATGTGTGGGTCTGGTGGTAGCAGATGCTTGTTCTGAATTCATTACCAG : CATTGTAAACAATGATGAATTTTCAGCGCGCCTTTCAGTAGCATCAATTATGAGACTTCAAGCAGCTGCACTTAAGGCATTGTCAGAAGATGGCACTATTGATATTACAACAATTCTTAAACTTGCTCAGCACTTTACTTCATTGACCGTCTGTCAGAAAAGCATGAACGACGGAGAATCGTCAGTGAATTCTTTGACAGCAATGTCAAGTTGTACAAACCAAATCAACCATGGCCAACTTGAAAATG : GATTGGCAAAGCGTGAAGCAGGATCCTCTGTTTTGCATGACATAGATACCGATTTTAGGTGTGATGATGAAATCGTTTCAACTGAATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTACCTTGGAG : ATGTCAGACTGCACTTGAAAACATACTCAAGACTGGACAACTTAAAACTCCAGATGATGCATCTGAAATTGTGTGATTCCTACACAAGCAGTGGGCTTTAGGCACCAAAAATTCAGTTACCAAAACATGACATATACGTACATAAAAGAGACAACCACATCTGATCAAGGCCATGTAAGATGTTATTAATTATGAGAGTACAAGAAACAAAATACCCCAAGTAGAGTGTTAAAAAAGTTATGTATTTATTGTTACTATTGATTAAAATTTTCTTAATAGTTTGTTGCTCATCTCTTACTAATTATTATGCACATACTTTATCAGTGATGTATGCCCTCTGTTAGTTTTAATATTATTATAT : GCAAAAA</gDNA_template>
            <first_frame> V  D  F  L  P  R  C  S  E  *  D  V  S  V  R  D  M  V  C  E  *  *  D  I  P  L  E  E  R  L  L  Q  Y  W  E  *  S :   Y  A  N  G  T  Q  I  Y  M  Y  T  H  M  V  L  S  H  V  W  V  W  W  *  Q  M  L  V  L  N  S  L  P   : A  L  *  T  M  M  N  F  Q  R  A  F  Q  *  H  Q  L  *  D  F  K  Q  L  H  L  R  H  C  Q  K  M  A  L  L  I  L  Q  Q  F  L  N  L  L  S  T  L  L  H  *  P  S  V  R  K  A  *  T  T  E  N  R  Q  *  I  L  *  Q  Q  C  Q  V  V  Q  T  K  S  T  M  A  N  L  K  M  :  D  W  Q  S  V  K  Q  D  P  L  F  C  M  T  *  I  P  I  L  G  V  M  M  K  S  F  Q  L  N  H  Q  I  I  S  A  V  L  S  I  A  P  L  L  I  Q  V  H  L  V  I  L  *  P  N  L  W  R  L  F  H  L  L  K  I  N  H  H  *  V  F  Q  S  C  I  Y  L  V  L  L  F  I  L  C  H  R  R  M  V  F  I  N  H  C  G  S  S  G  K  V  G  R  E  D  A  G  S  G  R  M  *  R  K  E  K  H  S  K  I  *  *  Y  H  H  T  C  S  W  T  I  Y  L  G   : D  V  R  L  H  L  K  T  Y  S  R  L  D  N  L  K  L  Q  M  M  H  L  K  L  C  D  S  Y  T  S  S  G  L  *  A  P  K  I  Q  L  P  K  H  D  I  Y  V  H  K  R  D  N  H  I  *  S  R  P  C  K  M  L  L  I  M  R  V  Q  E  T  K  Y  P  K  *  S  V  K  K  V  M  Y  L  L  L  L  L  I  K  I  F  L  I  V  C  C  S  S  L  T  N  Y  Y  A  H  T  L  S  V  M  Y  A  L  C  *  F  *  Y  Y  Y  M :   Q  K </first_frame>
            <second_frame>  W  I  S  C  L  V  A  R  S  R  M  *  V  *  G  I  W  C  A  N  S  R  T  F  P  W  R  S  D  C  C  S  I  G  N  E   : A  T  Q  T  V  P  R  F  T  C  I  H  I  W  C  S  P  M  C  G  S  G  G  S  R  C  L  F  *  I  H  Y  Q  :  H  C  K  Q  *  *  I  F  S  A  P  F  S  S  I  N  Y  E  T  S  S  S  C  T  *  G  I  V  R  R  W  H  Y  *  Y  Y  N  N  S  *  T  C  S  A  L  Y  F  I  D  R  L  S  E  K  H  E  R  R  R  I  V  S  E  F  F  D  S  N  V  K  L  Y  K  P  N  Q  P  W  P  T  *  K  W :   I  G  K  A  *  S  R  I  L  C  F  A  *  H  R  Y  R  F  *  V  *  *  *  N  R  F  N  *  I  I  K  S  F  Q  Q  S  F  Q  L  L  H  F  *  F  K  S  I  *  *  S  F  N  R  I  Y  G  G  C  S  I  F  *  K  *  I  I  I  E  Y  S  R  V  V  F  T  W  S  C  Y  S  Y  C  A  T  E  G  W  S  S  *  T  I  V  E  A  L  E  K  L  G  E  K  M  Q  V  Q  G  V  C  S  E  K  R  S  I  Q  R  Y  N  S  I  T  I  H  V  P  G  P  S  T  L  E  :  M  S  D  C  T  *  K  H  T  Q  D  W  T  T  *  N  S  R  *  C  I  *  N  C  V  I  P  T  Q  A  V  G  F  R  H  Q  K  F  S  Y  Q  N  M  T  Y  T  Y  I  K  E  T  T  T  S  D  Q  G  H  V  R  C  Y  *  L  *  E  Y  K  K  Q  N  T  P  S  R  V  L  K  K  L  C  I  Y  C  Y  Y  *  L  K  F  S  *  *  F  V  A  H  L  L  L  I  I  M  H  I  L  Y  Q  *  C  M  P  S  V  S  F  N  I  I  I   : C  K   </second_frame>
            <third_frame>   G  F  L  A  S  L  L  G  V  G  C  E  C  E  G  Y  G  V  R  I  V  G  H  S  L  G  G  A  I  A  A  V  L  G  M  K  :  L  R  K  R  Y  P  D  L  H  V  Y  T  Y  G  A  L  P  C  V  G  L  V  V  A  D  A  C  S  E  F  I  T  S :   I  V  N  N  D  E  F  S  A  R  L  S  V  A  S  I  M  R  L  Q  A  A  A  L  K  A  L  S  E  D  G  T  I  D  I  T  T  I  L  K  L  A  Q  H  F  T  S  L  T  V  C  Q  K  S  M  N  D  G  E  S  S  V  N  S  L  T  A  M  S  S  C  T  N  Q  I  N  H  G  Q  L  E  N   : G  L  A  K  R  E  A  G  S  S  V  L  H  D  I  D  T  D  F  R  C  D  D  E  I  V  S  T  E  S  S  N  H  F  S  S  P  F  N  C  S  T  S  D  S  S  P  F  S  D  P  L  T  E  F  M  E  A  V  P  S  S  E  N  K  S  S  L  S  I  P  E  L  Y  L  P  G  L  V  I  H  I  V  P  Q  K  D  G  L  H  K  P  L  W  K  L  W  K  S  W  E  R  R  C  R  F  R  A  Y  V  A  K  R  E  A  F  K  D  I  I  V  S  P  Y  M  F  L  D  H  L  P  W  R :   C  Q  T  A  L  E  N  I  L  K  T  G  Q  L  K  T  P  D  D  A  S  E  I  V  *  F  L  H  K  Q  W  A  L  G  T  K  N  S  V  T  K  T  *  H  I  R  T  *  K  R  Q  P  H  L  I  K  A  M  *  D  V  I  N  Y  E  S  T  R  N  K  I  P  Q  V  E  C  *  K  S  Y  V  F  I  V  T  I  D  *  N  F  L  N  S  L  L  L  I  S  Y  *  L  L  C  T  Y  F  I  S  D  V  C  P  L  L  V  L  I  L  L  Y  :  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51134" stop="51027"/>
                    <exon start="50393" stop="50296"/>
                    <exon start="50203" stop="49956"/>
                    <exon start="49819" stop="49423"/>
                    <exon start="49345" stop="49270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFLASLLGVGCECEGYGVRIVGHSLGGAIAAVLGMKLRKRYPDLHVYTYGALPCVGLVVADACSEFITSIVNNDEFSARLSVASIMRLQAAALKALSEDGTIDITTILKLAQHFTSLTVCQKSMNDGESSVNSLTAMSSCTNQINHGQLENGLAKREAGSSVLHDIDTDFRCDDEIVSTESSNHFSSPFNCSTSDSSPFSDPLTEFMEAVPSSENKSSLSIPELYLPGLVIHIVPQKDGLHKPLWKLWKSWERRCRFRAYVAKREAFKDIIVSPYMFLDHLPWRCQTALENILKTGQLKTPDDASEIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="57763" PGL_stop="52129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57763" e_stop="57687"/>
            <exon e_start="56536" e_stop="56415"/>
            <exon e_start="56341" e_stop="56250"/>
            <exon e_start="55183" e_stop="55078"/>
            <exon e_start="53186" e_stop="53032"/>
            <exon e_start="52219" e_stop="52129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57763" e_stop="57687" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.678">
            <gDNA_intron_boundary i_start="57686" i_stop="56537" i_length="1150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56536" e_stop="56415" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56414" i_stop="56342" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56341" e_stop="56250" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56249" i_stop="55184" i_length="1066"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55183" e_stop="55078" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.934">
            <gDNA_intron_boundary i_start="55077" i_stop="53187" i_length="1891"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53186" e_stop="53032" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.923">
            <gDNA_intron_boundary i_start="53031" i_stop="52220" i_length="812"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="52219" e_stop="52129" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57763" stop="57687"/>
              <exon start="56536" stop="56415"/>
              <exon start="56341" stop="56250"/>
              <exon start="55183" stop="55078"/>
              <exon start="53186" stop="53032"/>
              <exon start="52219" stop="52129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57763" stop="57687"/>
              <exon start="56536" stop="56415"/>
              <exon start="56341" stop="56250"/>
              <exon start="55183" stop="55078"/>
              <exon start="53186" stop="53057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAG : GACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACG : GGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAG : GCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAA : GGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTGAAGAAGAATTAGATAGCCTGCTAAA : TGGCAATCATTGTGATCCATACCTTCATCAAAGAGTGGTTTCGTCCACTCCACACTATGCACACTCCGGAGTAGTTGAGGCCGCACGTGAT</gDNA_template>
            <first_frame> L  F  C  G  T  V  T  W  *  S  C  H  L  P  G  I  W  N  R  S  F  R  A  L  G  R :   T  S  F  I  A  E  F  F  F  L  L  *  I  L  *  R  V  K  G  C  T  H  *  K  D  A  Q  G  C  F  L  S  S  I  C  *  S  S  L  H   : G  S  I  T  *  Y  R  K  K  S  C  T  F  F  L  F  M  A  L  *  A  R  H  S  C  S  L  A  L  E  Q  :  A  T  F  T  R  R  *  Q  L  V  A  R  S  C  S  S  L  L  E  T  C  S  F  V  S  T  Y  A  Q  K  R  A  C  *  S   : R  E  V  *  S  S  I  L  Y  C  G  F  A  *  C  E  I  C  C  N  C  C  E  G  N  *  D  P  R  R  P  H  N  *  W  F  R  Q  G  M  L  P  Y  *  R  R  I  R  *  P  A  K  :  W  Q  S  L  *  S  I  P  S  S  K  S  G  F  V  H  S  T  L  C  T  L  R  S  S  *  G  R  T  *  </first_frame>
            <second_frame>  C  S  V  A  Q  L  L  G  D  L  V  T  Y  R  A  S  G  T  G  H  L  E  L  L  A   : G  L  A  L  L  Q  N  S  S  S  F  S  K  S  Y  E  E  S  R  V  V  P  I  E  R  M  R  K  A  A  F  Y  H  P  F  A  E  A  A  Y  T  :  G  L  L  L  D  I  G  R  N  P  V  L  F  S  C  S  W  L  Y  R  Q  G  I  L  A  P  W  L  W  N  R :   R  P  L  L  E  G  D  N  W  W  R  G  H  A  A  A  F  L  K  H  V  H  L  S  A  H  M  L  R  K  G  R  V  N  Q  :  G  K  C  K  A  A  Y  F  I  V  V  L  H  N  V  K  S  V  V  I  A  V  R  G  T  E  T  P  E  D  L  I  T  D  G  L  G  R  E  C  C  L  T  E  E  E  L  D  S  L  L  N :   G  N  H  C  D  P  Y  L  H  Q  R  V  V  S  S  T  P  H  Y  A  H  S  G  V  V  E  A  A  R  D </second_frame>
            <third_frame>   V  L  W  H  S  Y  L  V  I  L  S  L  T  G  H  L  E  Q  V  I  *  S  S  W  Q  :  D  *  L  Y  C  R  I  L  L  P  S  L  N  P  M  K  S  Q  G  L  Y  P  L  K  G  C  A  R  L  L  S  I  I  H  L  L  K  Q  P  T  R :   V  Y  Y  L  I  *  E  E  I  L  Y  F  F  L  V  H  G  S  I  G  K  A  F  L  L  P  G  F  G  T   : G  D  L  Y  *  K  V  T  T  G  G  E  V  M  Q  Q  P  S  *  N  M  F  I  C  Q  H  I  C  S  E  K  G  V  L  I  K :   G  S  V  K  Q  H  T  L  L  W  F  C  I  M  *  N  L  L  *  L  L  *  G  E  L  R  P  P  K  T  S  *  L  M  V  *  A  G  N  A  A  L  L  K  K  N  *  I  A  C  *   : M  A  I  I  V  I  H  T  F  I  K  E  W  F  R  P  L  H  T  M  H  T  P  E  *  L  R  P  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57762" stop="57687"/>
                    <exon start="56536" stop="56415"/>
                    <exon start="56341" stop="56250"/>
                    <exon start="55183" stop="55078"/>
                    <exon start="53186" stop="53032"/>
                    <exon start="52219" stop="52129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVAQLLGDLVTYRASGTGHLELLAGLALLQNSSSFSKSYEESRVVPIERMRKAAFYHPFAEAAYTGLLLDIGRNPVLFSCSWLYRQGILAPWLWNRRPLLEGDNWWRGHAAAFLKHVHLSAHMLRKGRVNQGKCKAAYFIVVLHNVKSVVIAVRGTETPEDLITDGLGRECCLTEEELDSLLNGNHCDPYLHQRVVSSTPHYAHSGVVEAARD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="60893" PGL_stop="61127"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60893" e_stop="60907"/>
            <exon e_start="60966" e_stop="61127"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.193" acc_prob="0.000" e_score="0.533"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.533">
            <gDNA_exon_boundary e_start="60893" e_stop="60907" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.193" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60908" i_stop="60965" i_length="58"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="60966" e_stop="61127" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60893" stop="60907"/>
              <exon start="60966" stop="61127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216641" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACTTATACTTTT : ATGATAAAAGGAAAAAAGAAAGGCTTATTTCCAAAACAAAGAGAGAGTAAGAGCTACCAGTTACATCATTCACCTTTTATTATTGGCATTAGTCCAAAGCTAAGAGAAAGGATTTCGAACTGGAAAACATTATACTATGAATCTAAAAAATGACTTCAAAAT</gDNA_template>
            <first_frame> I  T  Y  T  F  :  M  I  K  G  K  K  K  G  L  F  P  K  Q  R  E  S  K  S  Y  Q  L  H  H  S  P  F  I  I  G  I  S  P  K  L  R  E  R  I  S  N  W  K  T  L  Y  Y  E  S  K  K  *  L  Q  N </first_frame>
            <second_frame>  S  L  I  L  L :   *  *  K  E  K  R  K  A  Y  F  Q  N  K  E  R  V  R  A  T  S  Y  I  I  H  L  L  L  L  A  L  V  Q  S  *  E  K  G  F  R  T  G  K  H  Y  T  M  N  L  K  N  D  F  K   </second_frame>
            <third_frame>   H  L  Y  F   : Y  D  K  R  K  K  E  R  L  I  S  K  T  K  R  E  *  E  L  P  V  T  S  F  T  F  Y  Y  W  H  *  S  K  A  K  R  K  D  F  E  L  E  N  I  I  L  *  I  *  K  M  T  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0017K18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="67416" PGL_stop="66622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67416" e_stop="66622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="67416" e_stop="66622" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67416" stop="66676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67357" stop="66622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67357" stop="66662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67357" stop="66663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</gDNA_template>
            <first_frame> R  F  D  K  G  A  T  S  R  T  Q  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  P  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  F  D  L  P  I  W  S  S  R  I  H  H  H  *  *  R  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  P  P  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  *  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  G  K  E  D  G  C  C  L  P  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  E  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  *  G  C  H  L  T  N  S  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  A  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  S  T  E  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  L  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  R  K  R  G  W  L  L  F  A  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67415" stop="66624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIEEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="73502" PGL_stop="74036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73502" e_stop="74036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="73502" e_stop="74036" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73502" stop="74036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGTATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGGGCCACCACAACATCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTCTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATCGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAACATCGCACATAAAACAGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCATGAATAAGGACGGATATATATTTTGAACAAATAGGAATTTGTTTGTTTGGAGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  N  I  S  T  K  S  R  W  R  R  I  L  S  P  L  Y  F  N  F  H  F  S  N  L  L  H  Q  L  H  D  Q  F  V  L  F  H  Y  S  G  L  G  H  H  N  I  S  K  T  P  F  V  I  V  V  S  H  N  C  L  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  R  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  H  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  M  N  K  D  G  Y  I  F  *  T  N  R  N  L  F  V  W  S  Y  L  G  K  S  </first_frame>
            <second_frame>  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  I  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  W  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  R  F  V  *  G  Y  L  N  P  *  I  R  T  D  I  Y  F  E  Q  I  G  I  C  L  F  G  A  I  L  G  N  L </second_frame>
            <third_frame>   A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  V  F  Q  L  S  F  Q  Q  S  V  A  S  A  A  *  S  I  R  S  V  P  L  Q  W  A  G  P  P  Q  H  Q  *  D  A  L  R  H  C  C  L  P  *  L  S  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  S  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  T  S  H  I  K  Q  I  N  T  Q  V  V  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  L  N  K  *  E  F  V  C  L  E  L  S  W  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73545" stop="73802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGGLASAILVPNPGGGASCLRCISTFISAICCISCMINSFCSTTVGWATTTSVRRPSSLLSPITVFPLSEFDRGKESVGPFDLVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73535" stop="73753"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISNISTKSRWRRILSPLYFNFHFSNLLHQLHDQFVLFHYSGLGHHNISKTPFVIVVSHNCLSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="74340" PGL_stop="74725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74340" e_stop="74725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="74340" e_stop="74725" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74340" stop="74725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGCCGGGGCCACTGTTATCTGCTCCCCGATCACGGGCGAGGTATTTTCCGCTCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGCTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCCTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> Q  K  W  R  L  V  D  Y  F  F  F  I  I  L  L  S  H  F  T  A  G  A  T  V  I  C  S  P  I  T  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  A  S  V  Q  Q  H  S  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  R  Q  I  F  I  Q  C  C  D  R  S  F  V  D  R  R  G  H  V  Y  F  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  R  N  G  G  L  *  T  I  S  S  S  S  S  S  S  V  T  S  R  P  G  P  L  L  S  A  P  R  S  R  A  R  Y  F  P  L  F  G  S  L  W  V  A  N  S  S  S  S  A  A  L  L  S  N  N  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  P  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  N  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  L  L  H  H  P  P  Q  S  L  H  G  R  G  H  C  Y  L  L  P  D  H  G  R  G  I  F  R  S  L  G  R  Y  G  S  P  I  P  R  R  A  P  R  F  C  P  T  T  Q  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  L  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  T  P  D  L  H  P  M  L  *  P  Q  L  C  R  S  P  W  S  R  L  L  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74342" stop="74659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFLLHHPPQSLHGRGHCYLLPDHGRGIFRSLGRYGSPIPRRAPRFCPTTQQSRYLSSPLSPFLRVSPNEASSTLSLGFRFPSQPPSFSLSVTPDLHPML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74359" stop="74673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISSSSSSSVTSRPGPLLSAPRSRARYFPLFGSLWVANSSSSAALLSNNTAVSISIFASLAFPSCISKRSKFNPFLRLSVSISTSFFLFICDARSSSNVVTAAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74340" stop="74588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKWRLVDYFFFIILLSHFTAGATVICSPITGEVFSALWVAMGRQFLVERRASVQQHSSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="79796" PGL_stop="77954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79796" e_stop="77954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="79796" e_stop="77954" e_length="1843"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79796" stop="79318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79342" stop="78767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79342" stop="78941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79341" stop="78676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79341" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78735" stop="77980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78671" stop="77979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78650" stop="77954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78614" stop="77979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78553" stop="78191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78549" stop="77970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78549" stop="77971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78548" stop="77971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78544" stop="78092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACATTGGGGATTTGATTTTAAGGTTGGAATTTTGTTGAAATTTGAGAGAGAAAAATCTGGAAGAGTGTTGGGAGTTAGAAATTTGGTTGGACGATTGAGCGAAAAATTGAAGAGAGGGAAAGAGTCGCGCAACTCAGGAGACTGAAGTCACGATCCTGTTCCCTTTGCTCGTCGGGTCGTTTTCAATACAGCTTTGAGCTCATTTGGTGGTGGAAGCTCGTTACCTCACTCGTCGTTGCCGTTTGCTGCATAAAAAGGGGTGAGAATCGACCCTTATTTTGTTTATGACTCGTTTTTTTCGCTCGATTGTTGCTTGTATGTGGTTGGCTGACATTTGGTTGTGACTCGAAGTCTGTCATTGCGTATTGCCTTTCTTCTATAGTTTTGCTGTTAGTTTGGTTGTAGTCCGAGTCGACGTTTTCCAGTTTTGGGAGTATGGGGTGCAAATTTTGTATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAGTCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCAGATGACAAATTCATTAATATGTGTACATGCATTGCTTGCCCCTGTTATTTATCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTTGAAGTCATTTATCCCCCTCTAACTCATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTTGTATGTTTAGACTAGGACAGGTACG</gDNA_template>
            <first_frame> K  H  W  G  F  D  F  K  V  G  I  L  L  K  F  E  R  E  K  S  G  R  V  L  G  V  R  N  L  V  G  R  L  S  E  K  L  K  R  G  K  E  S  R  N  S  G  D  *  S  H  D  P  V  P  F  A  R  R  V  V  F  N  T  A  L  S  S  F  G  G  G  S  S  L  P  H  S  S  L  P  F  A  A  *  K  G  V  R  I  D  P  Y  F  V  Y  D  S  F  F  S  L  D  C  C  L  Y  V  V  G  *  H  L  V  V  T  R  S  L  S  L  R  I  A  F  L  L  *  F  C  C  *  F  G  C  S  P  S  R  R  F  P  V  L  G  V  W  G  A  N  F  V  *  S  A  S  E  M  S  S  I  N  S  C  I  S  P  F  D  R  N  R  L  L  K  F  S  S  S  F  Q  L  S  M  L  F  R  S  R  S  R  Y  L  *  L  C  C  C  C  C  S  R  F  S  F  H  G  C  *  R  S  L  F  N  F  S  K  C  D  V  F  L  C  V  C  *  N  A  N  E  V  L  S  H  L  P  I  V  C  D  S  R  I  Y  F  G  M  F  *  G  *  V  L  V  H  F  F  P  A  K  G  M  V  V  H  G  G  V  L  R  *  K  I  S  *  T  H  S  P  S  I  C  F  S  L  C  I  P  H  V  C  F  V  F  M  C  D  T  V  I  W  K  *  V  F  F  V  F  S  I  I  M  S  C  Q  L  D  M  L  Y  Q  *  S  M  A  C  L  L  C  I  Y  *  T  A  V  V  H  P  H  A  D  D  K  F  I  N  M  C  T  C  I  A  C  P  C  Y  L  S  Y  L  L  *  D  F  I  S  *  Y  H  S  E  L  F  L  K  S  F  I  P  L  *  L  I  S  P  S  S  S  S  F  I  F  V  L  F  K  T  L  S  I  S  L  S  L  *  V  L  I  F  C  M  F  Y  C  M  *  N  P  P  R  V  L  M  D  F  I  P  S  H  Y  T  S  S  S  S  H  K  G  S  E  C  L  L  R  V  I  E  P  S  Q  R  C  T  G  R  K  N  S  R  K  C  T  A  G  D  *  F  W  F  T  R  T  W  K  I  A  G  N  Y  S  G  I  Y  *  E  A  V  Y  Q  P  Y  T  Q  F  I  P  *  Y  T  Y  Q  K  M  Y  R  R  P  S  S  K  P  G  L  M  A  V  K  *  A  A  E  K  N  F  S  T  L  E  S  *  K  T  G  *  Y  T  A  C  I  H  *  Y  T  E  T  L  Y  L  K  *  V  *  K  Y  E  W  Q  Q  A  C  E  N  S  N  F  M  K  I  E  G  A  Q  G  R  S  I  R  R  F  F  Y  Y  Y  L  F  I  K  L  Y  L  F  W  V  *  A  L  V  I  F  T  F  R  I  F  I  L  V  C  L  D  *  D  R  Y  </first_frame>
            <second_frame>  N  I  G  D  L  I  L  R  L  E  F  C  *  N  L  R  E  K  N  L  E  E  C  W  E  L  E  I  W  L  D  D  *  A  K  N  *  R  E  G  K  S  R  A  T  Q  E  T  E  V  T  I  L  F  P  L  L  V  G  S  F  S  I  Q  L  *  A  H  L  V  V  E  A  R  Y  L  T  R  R  C  R  L  L  H  K  K  G  *  E  S  T  L  I  L  F  M  T  R  F  F  R  S  I  V  A  C  M  W  L  A  D  I  W  L  *  L  E  V  C  H  C  V  L  P  F  F  Y  S  F  A  V  S  L  V  V  V  R  V  D  V  F  Q  F  W  E  Y  G  V  Q  I  L  Y  S  L  R  L  K  C  L  R  *  T  V  A  F  L  P  L  I  V  I  V  F  S  S  F  P  R  L  F  N  L  A  C  C  F  D  R  E  V  A  T  F  D  C  V  V  V  V  V  L  A  F  R  F  M  A  A  E  G  V  C  S  T  F  P  N  V  M  Y  S  C  V  F  V  E  M  R  M  R  F  F  L  I  S  Q  *  F  V  I  V  E  F  I  S  E  C  F  K  V  E  F  *  F  I  F  F  Q  L  K  A  W  L  F  M  A  V  F  S  V  R  K  F  H  E  R  T  V  L  P  Y  A  S  L  F  A  F  H  M  Y  V  L  C  L  C  V  I  R  *  F  G  N  K  Y  F  S  Y  L  A  S  S  C  L  A  N  W  I  C  C  T  N  E  V  W  H  V  Y  F  A  F  T  K  Q  Q  *  C  I  L  M  Q  M  T  N  S  L  I  C  V  H  A  L  L  A  P  V  I  Y  P  T  C  C  E  I  L  F  L  N  I  I  R  N  Y  F  *  S  H  L  S  P  S  N  S  F  L  Q  V  V  H  L  L  S  S  S  C  S  R  H  F  L  L  V  Y  R  F  K  C  *  S  F  V  C  F  I  A  C  E  T  L  L  E  S  S  W  T  L  F  H  L  T  T  L  P  H  R  A  I  K  A  Q  N  V  F  F  E  S  *  N  P  L  K  G  V  Q  V  G  R  T  A  E  N  A  L  L  E  I  D  S  G  S  P  E  L  G  K  L  L  E  I  T  V  A  Y  I  E  K  L  Y  T  N  H  I  H  S  L  Y  R  D  I  H  I  K  R  C  T  G  G  L  V  R  N  L  G  *  W  Q  *  S  K  L  L  K  R  I  F  Q  L  S  K  V  E  K  Q  A  D  I  Q  P  V  Y  T  D  I  Q  K  R  Y  T  L  N  R  C  K  N  M  N  G  S  R  R  A  K  I  R  T  S  *  R  S  K  V  L  K  E  G  V  L  E  D  F  F  I  I  I  Y  L  *  S  C  I  Y  F  G  Y  K  P  L  S  F  L  L  S  V  Y  L  F  L  Y  V  *  T  R  T  G  T </second_frame>
            <third_frame>   T  L  G  I  *  F  *  G  W  N  F  V  E  I  *  E  R  K  I  W  K  S  V  G  S  *  K  F  G  W  T  I  E  R  K  I  E  E  R  E  R  V  A  Q  L  R  R  L  K  S  R  S  C  S  L  C  S  S  G  R  F  Q  Y  S  F  E  L  I  W  W  W  K  L  V  T  S  L  V  V  A  V  C  C  I  K  R  G  E  N  R  P  L  F  C  L  *  L  V  F  F  A  R  L  L  L  V  C  G  W  L  T  F  G  C  D  S  K  S  V  I  A  Y  C  L  S  S  I  V  L  L  L  V  W  L  *  S  E  S  T  F  S  S  F  G  S  M  G  C  K  F  C  I  V  C  V  *  N  V  F  D  K  Q  L  H  F  S  L  *  S  *  S  S  S  Q  V  F  L  V  F  S  T  *  H  V  V  S  I  A  K  S  L  P  L  I  V  L  L  L  L  F  S  L  F  V  S  W  L  L  K  E  S  V  Q  L  F  Q  M  *  C  I  L  V  C  L  L  K  C  E  *  G  S  F  S  S  P  N  S  L  *  *  S  N  L  F  R  N  V  L  R  L  S  F  S  S  F  F  S  S  *  R  H  G  C  S  W  R  C  S  P  L  E  N  F  M  N  A  Q  S  F  H  M  L  L  S  L  H  S  T  C  M  F  C  V  Y  V  *  Y  G  N  L  E  I  S  I  F  R  I  *  H  H  H  V  L  P  I  G  Y  A  V  P  M  K  Y  G  M  F  T  L  H  L  L  N  S  S  S  A  S  S  C  R  *  Q  I  H  *  Y  V  Y  M  H  C  L  P  L  L  F  I  L  L  V  V  R  F  Y  F  L  I  S  F  G  I  I  F  E  V  I  Y  P  P  L  T  H  F  S  K  *  F  I  F  Y  L  R  L  V  Q  D  T  F  Y  *  F  I  A  L  S  A  N  L  L  Y  V  L  L  H  V  K  P  S  S  S  P  H  G  L  Y  S  I  S  L  H  F  L  I  E  P  *  R  L  R  M  S  S  S  S  H  R  T  L  S  K  V  Y  R  S  E  E  Q  Q  K  M  H  C  W  R  L  I  L  V  H  Q  N  L  E  N  C  W  K  L  Q  W  H  I  L  R  S  C  I  P  T  I  Y  T  V  Y  T  V  I  Y  I  S  K  D  V  Q  E  A  *  F  E  T  W  V  D  G  S  K  V  S  C  *  K  E  F  F  N  S  R  K  L  K  N  R  L  I  Y  S  L  Y  T  L  I  Y  R  N  V  I  P  *  I  G  V  K  I  *  M  A  A  G  V  R  K  F  E  L  H  E  D  R  R  C  S  R  K  E  Y  *  K  I  F  L  L  L  F  I  Y  K  V  V  F  I  L  G  I  S  P  C  H  F  Y  F  P  Y  I  Y  S  C  M  F  R  L  G  Q  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79312" stop="79085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVAFLPLIVIVFSSFPRLFNLACCFDREVATFDCVVVVVLAFRFMAAEGVCSTFPNVMYSCVFVEMRMRFFLISQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78486" stop="78274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRMSSSSHRTLSKVYRSEEQQKMHCWRLILVHQNLENCWKLQWHILRSCIPTIYTVYTVIYISKDVQEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79716" stop="79507"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFGWTIERKIEERERVAQLRRLKSRSCSLCSSGRFQYSFELIWWWKLVTSLVVAVCCIKRGENRPLFCL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78457" stop="78257"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPLKGVQVGRTAENALLEIDSGSPELGKLLEITVAYIEKLYTNHIHSLYRDIHIKRCTGGLVRNLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="83587" PGL_stop="84056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83587" e_stop="84056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83587" e_stop="84056" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83587" stop="84056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTTGCAATAGTCGCTGGAATTGGACCTTCAAGCATATTGTTGCCGAGTGAGATCCCCATTAATGTTTTTGACTCCCATAGTTGATCTGGTACCATCCCAGAGAATTGGTTTTTCGATAGCTCAAGAGTAATAAGCTGAAGCTCCCCAAGATAAGAAGGCAGTTTACCTGAGAGATTGTTTCCAGACAACACCAAGTCTGTGAGGCTTGAACAGTTCGCGAAAGTACTTTGGATGTCACCAGTGAAGTTGTTATCCGACAACACCAGCACGCTCAATGATTTGGCACCACATATCTCTGAAGACAACTCACCAGATAGACTGTTAGCACTGACATCAAGAACAGATAGCAAAGGGAGATACAGTGGTGGGAGAGGTCCACTTAGGAAGTTCTTTGACACCATTATTGACTCTACTTGCGTCCAGTTGGAAATCCACATAGGCAGGGGGCCTGATAAGCCGTTTGAAT</gDNA_template>
            <first_frame> K  F  C  N  S  R  W  N  W  T  F  K  H  I  V  A  E  *  D  P  H  *  C  F  *  L  P  *  L  I  W  Y  H  P  R  E  L  V  F  R  *  L  K  S  N  K  L  K  L  P  K  I  R  R  Q  F  T  *  E  I  V  S  R  Q  H  Q  V  C  E  A  *  T  V  R  E  S  T  L  D  V  T  S  E  V  V  I  R  Q  H  Q  H  A  Q  *  F  G  T  T  Y  L  *  R  Q  L  T  R  *  T  V  S  T  D  I  K  N  R  *  Q  R  E  I  Q  W  W  E  R  S  T  *  E  V  L  *  H  H  Y  *  L  Y  L  R  P  V  G  N  P  H  R  Q  G  A  *  *  A  V  *   </first_frame>
            <second_frame>  S  F  A  I  V  A  G  I  G  P  S  S  I  L  L  P  S  E  I  P  I  N  V  F  D  S  H  S  *  S  G  T  I  P  E  N  W  F  F  D  S  S  R  V  I  S  *  S  S  P  R  *  E  G  S  L  P  E  R  L  F  P  D  N  T  K  S  V  R  L  E  Q  F  A  K  V  L  W  M  S  P  V  K  L  L  S  D  N  T  S  T  L  N  D  L  A  P  H  I  S  E  D  N  S  P  D  R  L  L  A  L  T  S  R  T  D  S  K  G  R  Y  S  G  G  R  G  P  L  R  K  F  F  D  T  I  I  D  S  T  C  V  Q  L  E  I  H  I  G  R  G  P  D  K  P  F  E  </second_frame>
            <third_frame>   V  L  Q  *  S  L  E  L  D  L  Q  A  Y  C  C  R  V  R  S  P  L  M  F  L  T  P  I  V  D  L  V  P  S  Q  R  I  G  F  S  I  A  Q  E  *  *  A  E  A  P  Q  D  K  K  A  V  Y  L  R  D  C  F  Q  T  T  P  S  L  *  G  L  N  S  S  R  K  Y  F  G  C  H  Q  *  S  C  Y  P  T  T  P  A  R  S  M  I  W  H  H  I  S  L  K  T  T  H  Q  I  D  C  *  H  *  H  Q  E  Q  I  A  K  G  D  T  V  V  G  E  V  H  L  G  S  S  L  T  P  L  L  T  L  L  A  S  S  W  K  S  T  *  A  G  G  L  I  S  R  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83744" stop="84055"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSLPERLFPDNTKSVRLEQFAKVLWMSPVKLLSDNTSTLNDLAPHISEDNSPDRLLALTSRTDSKGRYSGGRGPLRKFFDTIIDSTCVQLEIHIGRGPDKPFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="86781" PGL_stop="87303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86781" e_stop="87303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="86781" e_stop="87303" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86781" stop="87303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGTCCTTGTAAGATGAATGTGCCAAAGCCTTTGGTTCTTGATCCTTATGCTTATGGAAACCAGAGCCGGGGAGGTCAAAACGGGGATGATGGAGCTTCAAGAAGCAATAACAAAAGTTTCAAGAACCATAGATTCCTCAGTGTTTCATCCATTGTTGCAATCTCTGCTGCAGCTGTGATCGCGGTTGGAGTAATGATAATAACCTTACTCAATGCTTCTGTTCGAAGGAGGATCACGTTCGTTGACAACGCCTTGGAGAGTATGTGCTCAAGTTCTTCTAAATCAGGGACCCTAGCCACTGGAAAACTTGTGTTATTGGACACCAAATCTTCCCCGGATTGGACTAATAGCAGTCTTGAATCAATCCTAGACAAGGCATCTCAAATCGGTGAAGGTGTCTTTGGGACTGTTTACAAAGCCCCATTGGGAGGGGAAGGAAGAATAGTAGCTGTCAAGAAGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTTAGAGTTTTAGC</gDNA_template>
            <first_frame> K  V  L  V  R  *  M  C  Q  S  L  W  F  L  I  L  M  L  M  E  T  R  A  G  E  V  K  T  G  M  M  E  L  Q  E  A  I  T  K  V  S  R  T  I  D  S  S  V  F  H  P  L  L  Q  S  L  L  Q  L  *  S  R  L  E  *  *  *  *  P  Y  S  M  L  L  F  E  G  G  S  R  S  L  T  T  P  W  R  V  C  A  Q  V  L  L  N  Q  G  P  *  P  L  E  N  L  C  Y  W  T  P  N  L  P  R  I  G  L  I  A  V  L  N  Q  S  *  T  R  H  L  K  S  V  K  V  S  L  G  L  F  T  K  P  H  W  E  G  K  E  E  *  *  L  S  R  S  L  *  H  Q  K  S  S  N  I  L  R  T  S  I  E  K  L  E  F  *  </first_frame>
            <second_frame>  R  S  L  *  D  E  C  A  K  A  F  G  S  *  S  L  C  L  W  K  P  E  P  G  R  S  K  R  G  *  W  S  F  K  K  Q  *  Q  K  F  Q  E  P  *  I  P  Q  C  F  I  H  C  C  N  L  C  C  S  C  D  R  G  W  S  N  D  N  N  L  T  Q  C  F  C  S  K  E  D  H  V  R  *  Q  R  L  G  E  Y  V  L  K  F  F  *  I  R  D  P  S  H  W  K  T  C  V  I  G  H  Q  I  F  P  G  L  D  *  *  Q  S  *  I  N  P  R  Q  G  I  S  N  R  *  R  C  L  W  D  C  L  Q  S  P  I  G  R  G  R  K  N  S  S  C  Q  E  A  C  N  I  K  N  P  P  I  S  *  G  L  R  *  R  S  *  S  F  S </second_frame>
            <third_frame>   G  P  C  K  M  N  V  P  K  P  L  V  L  D  P  Y  A  Y  G  N  Q  S  R  G  G  Q  N  G  D  D  G  A  S  R  S  N  N  K  S  F  K  N  H  R  F  L  S  V  S  S  I  V  A  I  S  A  A  A  V  I  A  V  G  V  M  I  I  T  L  L  N  A  S  V  R  R  R  I  T  F  V  D  N  A  L  E  S  M  C  S  S  S  S  K  S  G  T  L  A  T  G  K  L  V  L  L  D  T  K  S  S  P  D  W  T  N  S  S  L  E  S  I  L  D  K  A  S  Q  I  G  E  G  V  F  G  T  V  Y  K  A  P  L  G  G  E  G  R  I  V  A  V  K  K  L  V  T  S  K  I  L  Q  Y  P  E  D  F  D  R  E  V  R  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86783" stop="87301"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPCKMNVPKPLVLDPYAYGNQSRGGQNGDDGASRSNNKSFKNHRFLSVSSIVAISAAAVIAVGVMIITLLNASVRRRITFVDNALESMCSSSSKSGTLATGKLVLLDTKSSPDWTNSSLESILDKASQIGEGVFGTVYKAPLGGEGRIVAVKKLVTSKILQYPEDFDREVRVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="87799" PGL_stop="88173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87799" e_stop="88173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87799" e_stop="88173" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87799" stop="88173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</gDNA_template>
            <first_frame> D  T  Q  *  S  C  E  S  F  A  *  A  R  Q  C  V  G  V  C  *  S  N  Y  E  Y  L  S  *  R  G  S  F  A  C  S  E  V  G  I  G  V  H  F  S  N  T  I  K  *  A  F  N  G  *  S  G  S  N  L  A  G  H  Q  N  T  C  S  S  K  N  G  S  I  L  K  L  V  T  N  L  M  N  F  P  F  S  L  T  F  Y  H  I  L  L  L  L  S  *  P  P  N  L  M  F  L  D  *  I  V  I  E  R  V  L  Y  F  S  V  I  *  *  N  I  *  E </first_frame>
            <second_frame>  I  L  N  D  H  V  R  V  L  L  E  Q  G  N  V  L  E  C  V  D  P  T  M  N  T  Y  P  E  E  E  V  L  P  V  L  K  L  A  L  V  C  T  S  Q  I  P  S  S  R  P  S  M  A  E  V  V  Q  I  L  Q  V  I  K  T  P  V  P  Q  R  M  E  V  Y  *  N  L  L  Q  T  *  *  I  S  L  S  L  *  L  S  I  I  S  Y  C  C  Y  L  N  L  L  I  *  C  F  W  T  R  *  *  *  R  E  F  C  T  S  L  S  F  D  E  I  Y  E   </second_frame>
            <third_frame>   Y  S  M  I  M  *  E  F  C  L  S  K  A  M  C  W  S  V  L  I  Q  L  *  I  L  I  L  K  R  K  F  C  L  F  *  S  W  H  W  C  A  L  L  K  Y  H  Q  V  G  L  Q  W  L  K  W  F  K  S  C  R  S  S  K  H  L  F  L  K  E  W  K  Y  T  K  T  C  Y  K  L  D  E  F  P  F  L  F  D  F  L  S  Y  P  I  V  V  I  L  T  S  *  S  D  V  F  G  L  D  S  D  R  E  S  F  V  L  L  C  H  L  M  K  Y  M  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87800" stop="88021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNDHVRVLLEQGNVLECVDPTMNTYPEEEVLPVLKLALVCTSQIPSSRPSMAEVVQILQVIKTPVPQRMEVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87906" stop="88100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWHWCALLKYHQVGLQWLKWFKSCRSSKHLFLKEWKYTKTCYKLDEFPFLFDFLSYPIVVILTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="90787" PGL_stop="88197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90787" e_stop="90654"/>
            <exon e_start="90538" e_stop="90490"/>
            <exon e_start="90054" e_stop="89983"/>
            <exon e_start="89897" e_stop="89796"/>
            <exon e_start="89715" e_stop="89648"/>
            <exon e_start="89459" e_stop="89307"/>
            <exon e_start="89198" e_stop="88850"/>
            <exon e_start="88218" e_stop="88197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.938" acc_prob="0.780" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="90787" e_stop="90654" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90653" i_stop="90539" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90538" e_stop="90490" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="0.780">
            <gDNA_intron_boundary i_start="90489" i_stop="90055" i_length="435"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90054" e_stop="89983" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.869">
            <gDNA_intron_boundary i_start="89982" i_stop="89898" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89897" e_stop="89796" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="89795" i_stop="89716" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89715" e_stop="89648" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89647" i_stop="89460" i_length="188"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89459" e_stop="89307" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89306" i_stop="89199" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="89198" e_stop="88850" e_length="349"/>
          </exon>
          <intron i_serial="7" don_prob="0.914" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88849" i_stop="88219" i_length="631"/>
          </intron>
          <exon e_serial="8" e_score="0.636">
            <gDNA_exon_boundary e_start="88218" e_stop="88197" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90787" stop="90654"/>
              <exon start="90538" stop="90490"/>
              <exon start="90054" stop="89983"/>
              <exon start="89897" stop="89796"/>
              <exon start="89715" stop="89648"/>
              <exon start="89459" stop="89307"/>
              <exon start="89198" stop="89006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90700" stop="90654"/>
              <exon start="90538" stop="90490"/>
              <exon start="90054" stop="89983"/>
              <exon start="89897" stop="89796"/>
              <exon start="89715" stop="89648"/>
              <exon start="89459" stop="89307"/>
              <exon start="89198" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90700" stop="90654"/>
              <exon start="90538" stop="90490"/>
              <exon start="90054" stop="89983"/>
              <exon start="89897" stop="89796"/>
              <exon start="89715" stop="89648"/>
              <exon start="89459" stop="89307"/>
              <exon start="89198" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90667" stop="90654"/>
              <exon start="90538" stop="90490"/>
              <exon start="90054" stop="89983"/>
              <exon start="89897" stop="89796"/>
              <exon start="89715" stop="89648"/>
              <exon start="89459" stop="89307"/>
              <exon start="89198" stop="89134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89408" stop="89307"/>
              <exon start="89198" stop="88850"/>
              <exon start="88218" stop="88197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89408" stop="89307"/>
              <exon start="89198" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89182" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA : GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA : ATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG : TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG : TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG : GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG : AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT : AATGCATAAAAGAAGAACAAAC</gDNA_template>
            <first_frame> E  N  I  K  R  C  V  C  I  I  Y  D  P  S  R  S  N  Q  G  V  L  A  L  K  A  L  K  L  S  D  S  F  M  E  L  Y  K  S  N  N  F  T  G  E  K :   L  R  E  K  N  L  S  W  V  D  I  F  E  E  I  P  :  I  K  V  S  N  S  A  L  I  S  A  F  M  T  E  L  E  P  D  T  P  V  T  Q  :  C  D  Y  E  R  L  Q  L  S  T  N  P  Y  L  E  R  N  V  E  F  L  I  E  C  M  D  D  L  S  M  E  Q  Q  K  :  F  Q  F  Y  Y  R  N  L  S  R  Q  Q  A  Q  Q  Q  A  W  L  Q  K  R  R :   T  E  N  M  A  R  K  A  A  G  E  E  L  L  P  E  E  D  P  S  N  P  V  F  K  P  L  P  E  P  S  R  L  D  S  F  L  I  T  N  Q  I  S  N  Y  C  N  Q  I  N  G :   V  A  G  Q  S  L  S  R  L  H  L  M  K  A  L  H  E  N  *  A  S  F  A  L  A  I  C  T  L  D  F  C  A  F  F  F  N  F  T  D  V  R  G  K  E  N  D  L  Y  L  C  *  V  S  L  V  F  A  F  T  F  F  Y  D  W  Q  S  S  V  A  Y  L  E  S  Y  M  *  R  F  T  S  S  P  Q  R  R  N  R  D  L  C  I  D  D  L  I  V  F  *  S  I  V  W  K  W  K  I  K  N  L  S  I  T  L  I  N  :  N  A  *  K  K  N  K  </first_frame>
            <second_frame>  R  I  *  N  V  V  S  A  *  S  M  I  L  L  D  P  T  K  V  S  *  L  *  K  P  *  S  F  L  I  L  S  W  N  S  T  R  V  T  T  L  L  E  R   : S  *  E  K  R  I  F  H  G  L  T  S  L  K  R  Y  Q :   *  K  F  Q  I  L  H  S  L  V  P  L  *  L  N  W  N  P  I  H  L  *  L  S :   V  I  M  N  A  Y  N  Y  Q  P  I  H  I  W  R  G  M  W  N  F  *  L  N  A  W  M  T  C  R  W  S  S  K  S :   S  N  S  I  T  G  I  F  L  V  N  K  L  S  S  K  L  G  F  R  R  G   : G  L  R  T  W  H  V  K  L  Q  E  K  S  Y  C  Q  K  R  I  P  L  I  L  S  L  S  H  S  Q  S  P  H  G  W  I  A  F  S  *  L  I  K  F  Q  I  T  A  T  R  L  M   : E  L  R  D  K  A  S  V  D  Y  I  *  *  R  L  C  T  R  T  E  Q  V  L  R  W  Q  F  V  P  *  I  F  V  P  F  F  S  T  L  L  M  *  E  G  K  R  M  T  F  I  S  V  R  C  L  *  F  L  L  L  H  S  S  M  I  G  N  Q  V  *  P  T  L  N  H  I  C  E  D  L  H  L  V  H  R  E  G  I  G  I  Y  V  S  M  T  L  L  F  F  D  R  L  C  G  N  G  R  L  K  I  S  Q  L  P  S  L  I :   M  H  K  R  R  T  N </second_frame>
            <third_frame>   E  Y  K  T  L  C  L  H  N  L  *  S  F  *  I  Q  P  R  C  L  S  F  E  S  L  E  A  F  *  F  F  H  G  T  L  Q  E  *  Q  L  Y  W  R  E  :  A  E  R  K  E  S  F  M  G  *  H  L  *  R  D  T   : N  K  S  F  K  F  C  T  H  *  C  L  Y  D  *  I  G  T  R  Y  T  C  N  S   : V  *  L  *  T  L  T  I  I  N  Q  S  I  F  G  E  E  C  G  I  F  D  *  M  H  G  *  L  V  D  G  A  A  K   : V  P  I  L  L  P  E  S  F  S  S  T  S  S  A  A  S  L  A  S  E  E  E  :  D  *  E  H  G  T  *  S  C  R  R  R  A  T  A  R  R  G  S  L  *  S  C  L  *  A  T  P  R  A  L  T  V  G  *  L  S  H  N  *  S  N  F  K  L  L  Q  P  D  *  W  :  S  C  G  T  K  P  Q  *  T  T  S  D  E  G  F  A  R  E  L  S  K  F  C  V  G  N  L  Y  L  R  F  L  C  L  F  F  Q  L  Y  *  C  E  R  E  R  E  *  P  L  S  L  L  G  V  F  S  F  C  F  Y  I  L  L  *  L  A  I  K  C  S  L  P  *  I  I  Y  V  K  I  Y  I  *  S  T  E  K  E  *  G  S  M  Y  R  *  P  Y  C  F  L  I  D  C  V  E  M  E  D  *  K  S  L  N  Y  P  H  *   : *  C  I  K  E  E  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90787" stop="90654"/>
                    <exon start="90538" stop="90490"/>
                    <exon start="90054" stop="89983"/>
                    <exon start="89897" stop="89796"/>
                    <exon start="89715" stop="89648"/>
                    <exon start="89459" stop="89307"/>
                    <exon start="89198" stop="89141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENIKRCVCIIYDPSRSNQGVLALKALKLSDSFMELYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYERLQLSTNPYLERNVEFLIECMDDLSMEQQKFQFYYRNLSRQQAQQQAWLQKRRTENMARKAAGEELLPEEDPSNPVFKPLPEPSRLDSFLITNQISNYCNQINGVAGQSLSRLHLMKALHEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 204 chains have been computed
$ 
$ memory statistics:
$ 1241256 bytes spliced alignments in total
$ 123 spliced alignments have been stored
$ 10091 bytes was the average size of a spliced alignment
$ 26256 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1641 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 222 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:41:17
-->
