<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:41:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345337" ref_strand="-" ref_description="SGN-U345337        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 1e-32, score=143)">
      <seq>cttatgttcatgttgatctagaaaagagagacaagcttgatgccaaggctgtgaagtgttacttcataggctatggttctgatttgtttggttacaggttttgggatgacaagaacagaaagatcctgagacattgtgatgtgatatttgatgagtctgtcctgtacaaggacagagagcagaagtttctagagattaccaagcaagtgagagttgaggttgagttggagaagagtaacccccagatatgtcaaagcagattctataataccttcattgatgatttcagcaggaaggtatgagtttacttcttgaagcataagtcagatgtgtttgcaactttcaagaagtggaaagctgaagttgagaatcaaaccggtttgaaagtcaaatgcctaaggtcttacaatggaggagaggatgacaaatcagagttcaaggcatcttgtgcagctgagggaatcaaattgatgagaacagttccttgtaaggcaaggcagaatggaattgctgagtggatgaacagaacattgaatgagcgtgcaaggagtatgaggatacactatgggctgcccaaaacattttgggcggtgttgtgagcacacctgcatacttgatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017L21.1" temp_strand="+" temp_description="C09SLm0017L21.1  AC233068.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0017L21 upload_account_name:spain (1 - 127674)">
        <position start="85479" stop="91202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85779" g_stop="86032" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86033" i_stop="90534" i_length="4502">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90535" g_stop="90902" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="622" r_length="367" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017L21.1" gen_strand="+" ref_id="SGN-U345337" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345337" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85779" e_stop="86032"/>
          <exon e_start="90535" e_stop="90902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGTTCAGGTTGATCCAGACAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGCTATGGTTCTTATTTGTTTGGTTACACGTTTTGGAATGTCAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTATCCTGTACAAGGACAGACAGAAGAAGGTTCTAAAGATTACAAAGCAAGTGGGAGTTGAAGTTGAGTTGGAGAAGAGTAA-CCCCAGAGATGTCGAAGCAGATTCTCAACCAAATCCTACTAAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTGTTAAGGAGATCATCCAGATCCATCAGGGAACCAGATAGATATTCACCTCCATTACACTATTTATTGCTGACTGATGAGGGGGAACCAGAGTCTTTTAATGAGGCCCTACAGTGGAGGATTTGATCAAGTGGGAGCAAGCCATGGATGATGAGATGAGGTCACTTTAGAAGGATGACACATGGGTGTTGACTGAGTAACATAGAGAGAAGAGAGCTTTGCTCAACAAGTGGGTGTTCAGAATAAAGACTGAACCAAATGGCAAAAGAAGGTTCAAGGCTCGTTTAGTGGTTAAAGAATATTCACAAAGGAAAGGTATTGATTATGCAAAAATATTTTCTCCTGTTGTGAAGTTAACCTTTATTCGAATTCTGTTGAGTATTGTTGCATCAGATAATTTGCATCTAGAGCAAGTGGATGTAAAAATAGCGTTTTTACATGGAGATCTGGATAAAGAGATCTATATGCAGCAATCGGAAGGATTTGTGGTTCCAGGCAAGGAACACATGGTGTGCAAGCTCACCAGGAGCTTTATGGACTAAAGCAAGCACCAAGGCAGTGGTACAAGAAATTTGACTCCTTCATGAGCAAGAGTGGATTCTGCAAAGCTGAAAAGGATCCTTGTTGTTACTTCAAGAAATACACTGATTCATATGTCTTTCTACTCTATAATGTGGATGATATGTTGATTGCAGGATCTAGTATGAGGGAGATTAACAATCTGAAGACAAGGTTGTCTGCAACATTTGAGACGAAAGATTTGGGTCCAGCGAAGCAGATTTTAGGGATGAAGATTTCTCGGGATAGATCTGTTGGCACTTTAAATCTATCTCAGAAGTTGTACATTGAGAAGGTGCTGAGCAGATTCAGGGTTAATGATGCAAAACCCAGGACTACTCTATTGGCAAATCATTTTAAATTGTCAAAGGAGCAGTCACCCAAGAATGTCGAGGAGCGTGATCACATGGCACTTGTTCCATATGCTTCAGCAGTTGGTAGTTTGATGTATGCTATGGTCTCTACTAAACCTGATATAGCACATGCAGTGGGAGTTGCTAACAGGTACATGGCGAACCCTGGAAAAGAGCATTGGGAAGATGTGAAGTGGCTTCTGAGATATCTGAGAGGTACATCCAGTACTTCACTTTTTTTTGGCAACGGCAAGGATTTACACCATAGGTGGAACAGAAGTGAGTTGGATTTCCAGGCTTCAGAAGTGTGTTTCTCTTTCATCTACTGAAGCTGAGTATGTGGCAATAGCTGAAGCTGGGAAAGAGATGATATGGCTGGCAGATTATCTTGAGGAATTGGGCAAGAAGCAGAGCGAGAAGATTTTTTACTCAGATAGCCAGAGTGCCATACAGTTGGTGAAAAATATAGTCTATCATTTGAAGACAACGCACATCAGAAGGTGATACCATTTCACTCGCAAGGCAATGGAGGATGGTGATATGTTCTTGGAGAAGATAGAGGGTGCAAAGAACCCGGCAAACATGTTGACAAAATGTGTTGATGTTGGGAAACTGAGGTTATGTAAAACCTCGGTTGGTCTTCTGTAGTTGTTGCTACAGATGTTGCGGTGCGGTAAAGATGTTGATGATGAAGAGATTTTTTTTCAGAATGTATTTTTTGGATGACTGAGTCAGTCTCCAAGTGGGAGAATTGTTAGGTAGTGAATCCTGATTAATTTTAGGTTTTCCTATTTATTCTCTATTTTAGGTTTTCCTATTTATTCTCTATTTTAGGTTTTCCTATTTATTCTCTGTAACCAAAAATACTTTGATTTAATTAATATAAATATACCTCACCGCCATGGAAGTTTACTCACGGGGTGTTCCCACGAAATATTAGGTTTTCTCTTTCTCTCTCTAGATCTCTCATCTCTTTCTCTTGAAAGTTCTTGTGTTCTTCATTCATCAAGTGTGTGTGCGTGAATTCGATCCTAAATACTATATCACTTTTAGATATCTATCAAAGATGCAATGTACCCATATTTGAACCTACTGGATATGCGGAAGCTGAAAGAGACAAGAAATGGATTGTCAAAATGCAGGAGGAGCTAACCATGATCAAGAAAATGACACATGGAAGCTGGTAGAAAGGCCTCTAGACAGAAAGGTTATTGGCGTTAAATGGGTTTACAAAACTAAGCTAAATGCAGATGGTTCGGTGAACAAACACAAAGCTAGGCGTATGGTGAAGGTTCATTCTCAGATTTTTGGTGTGGATTTATCTGAAACATTTGCACCAATCGCAAGACATGACATTATCAGGTTTCTGTTGGCAGTTGCAGCACAAAAGAGTTGGAAAATCGACAAACTGGATGTTGAATCAGCCTTTTGAATGGTTTCTTGCAAGAAGAAATCTATGTTGAGCAACCTGAAAAAATTAGTAGTAGAAGGACAGGAAGATAAAGTCTACTAGCTAAAAAAGGACCTTTATGGATTAAAACAAGATCCAAGGGCTTGGTACAGTAGAATCAATGATCATGACTCTTTACATAAAGCATGTTAACTCTGACATTATTATAATTTCTTTGTATGTTGATAATATTTTAGTAACATGGAGTGATTTTGTGCTCATAGAAGAGTTGGAAATCATGCGTCTTTGAAATGAAGAATCTCGAATGACTTACTTTCTTGGAAGGGAGGTTACACAAATCCAAGATCAAATATTCATTTGTAAGATTATGTAAAAGAAATTATGAGGAAATTTAGAACGGATGACTGCAAAAGTATGAGTACGCCTATGAATCAAAAGAAGAAGCTAATGAAGGACGTATTAATATAAATATACCTCACCGCCGTGGAAGTCTACTCACGGGGTGTTACCATGAAATATTGGGTTTTGTCTTTCTCTCTCTAGATCTCTCATCTCTTTCTCTTGAAAGTTCTTGTGTTCTTCATTCATCTAGTGTGTGTGCGTGAATTCGAGCCTAACAACTGGTATCAGAGCTAGGAGATTCAACACGATCATAGAAGATGGATAGTTCGAAGCTTGGAATCGAGAAGTTTGATTGATCCGATTTCAATTTCAGGATGATGCAGATCGAAGATTATCTATACCATAAAGATCTTCACGAACCGTTGACCGGGGTGAAGCCGGAATCCATGATGGAGGAGAAGTGGAAACTCAAGGATCGCCAGGCTCTAGGGTTGATCCGATTGACTTTGTCAAGAAACATGGTGTTCAACATCGTGAAGGAGAAGACTACGTCCGGTCTGTTGAAGGCACTGTCAAACATGTATGAAAAAACATCGGCTATGAACAAGGTATATTTGATGCGTGGATTGTTCAATTTACAGATGTCTGAAACTGGATCCGTTTCTAATCATATAAACGAGTTCAATATGATTGTGAGTAAACTCAATTCTGTGGATATTAAATTTGAAGATGAGATTAAGGTGTTGATTTTGATGTCATCTCTTCCCGAGCCTTGGGATACTGTTGTTGCTGCGATTAGCAGTTCCCGTGGATCTGAGAAACTAAAGTTTGATAAAATCTGTGATGTTGTTCTTAGCGAAAGTATTCGCAAATGAGAAGTGGGAGATTCATCGGGCGGTGCTCTCAGCGTTGATTGAAGGGAGAGAAGTAAGACTAAAGGCCAAAATCAACATGGTCGATAAAAATCAAGGAATCGAGGAAAATCACTGAATAGATCAAATGTGACTTGTTGGAACTGTGGAGAAAAAGGGCACTTTCAGACGAATTGTACAAAGCCAAAGAAGAAACAGAATTAGAAATTTAGAGATGACAATGATTCTATAAATTCAGCAGAGGACATTGGGGATGCTCTAATCCTTACTGTGAACAGCCGGTTGAATCATGGATTTTGGATTCTGGTGCATCTTTCCATTCGTCTCCAAGCAAGGAGTTGTTCCAAAACTTCAAATCTGGAAATTTTGGAAAAGTATATCTTGCTGACAATAAAGCCTTAGAGATTGAATGAAACAGGGATGTTTGCATAAAGACCACATCGGGAAAGCAGTGGACATTGGAGGATGTCAGATATATTCCTGGGATCAAGAAAAATATGATCTGTGTTGGTCAGTTGGATAGCAAGGGATATGCAGCAGAGTTTGGGAAAGGTTCGTGGAAGATCGTGAAAGGTGATATGGTAGTAGCTCGTGGCACCAAATTTGGAACCTTGTACACCACTGCAGGGTGTATAAACATGGCCGCTGTTGTTGAAGATGTTTCCGGTTCATGTTTGTGGCACAACAGACTTGGGCGCATGAGTACTAAAGGAATGAAGATGCTGGTTGCAAAAGGAGCATTAGAGGGTCTGAAGTCTGTTGATATGGGTCTTTGCGAGAGCTGTGTTATAGGCAAACAGAAAAGAGTAAGCTTCACAAAGACTCCTAGAGAGCCAAAGAAAGTGCGGTTAGAAATGGTCCATACAGATGTTTGGGAACCATCTCCAGTATCATCACTTGGAGGATCCAGATTCTATGTTACCTTCATTGATGATTTCAGCAGGAAGGTATGTGTTTAGTTCTTGAAGCATAAGTCAGATGTATTTGCAAGTTTCAAGAAGTGGAAAGCTGAAGTTGAGAATCAGACCTGTTTGAAAGTCAATTGCCTAAGGTCTGACAATAGAAGAGAGTATGACAAATCAGAGTTCAAGGCATTCTGTGCAGCTGAGGGAATCAGATTGATGAGAACAGTTCCTGGTAAGGCAAGGCAGAATGGAATTGCTGAAAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGAATACACTGTGGGCTGCCCAAAACACTTTGGGTGGATGCTGTGAGCACAGCTGCATACTTGATCAAC</genome_strand>
        <mrna_strand>CTTATGTTCATGTTGATCTAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGCTATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGATGTGATATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGTTTCTAGAGATTACCAAGCAAGTGAGAGTTGAGGTTGAGTTGGAGAAGAGTAACCCCCAGATATGTCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATTCTATAATACCTTCATTGATGATTTCAGCAGGAAGGTATGAGTTTACTTCTTGAAGCATAAGTCAGATGTGTTTGCAACTTTCAAGAAGTGGAAAGCTGAAGTTGAGAATCAAACCGGTTTGAAAGTCAAATGCCTAAGGTCTTACAATGGAGGAGAGGATGACAAATCAGAGTTCAAGGCATCTTGTGCAGCTGAGGGAATCAAATTGATGAGAACAGTTCCTTGTAAGGCAAGGCAGAATGGAATTGCTGAGTGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTATGGGCTGCCCAAAACATTTTGGGCGG-TGTTGTGAGCACACCTGCATACTTGATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318277" ref_strand="+" ref_description="SGN-U318277        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G04020.1 | Symbol: ATBRCA1 | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein, contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain | chr1:1036559-1040223 FORWARD | Aliases: F21M11.4, F21M11_4, ATBRCA1 (evalue: 4e-53, score=205) genbank/nr: gi|42571335|ref|NP_973758.1| zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana] (evalue: 3e-51, score=205)">
      <seq>atcattgatgcatgtcctgggaatagcaatgtatgaaagatccacttattttagtatgttcacatttatttgcttacttgtatggtatttgtactttagcctactttaatgcccttttattttgagaaagcctttgaagtaaaataaatttttacttctttttgcttggaattgttagctgaaaatggtgcgtttcagacattattaatccatcgtattggttttttgacattttgcagtacatgttggtgaaatttgatgatatgtgtggtgcaactgcgtgcaagttctggagaccaaatgtcacacatgttgttgcaacaactgatgtaaagggtgcatgcaccagaacaatgaaatttctcatggcgattttgagtggaaaatggatcccaactatggactgggtaaaagcttgtgttgcagcaaatggtccagtaaatgaagaactttatgaaataagtctagacaattatggccgttctgggggccccaaagctggaaggttgatggcctcaactaatgggccaaagctttttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctgttagatctagtcgagaaggctggaggcagtgtcattcacagtgaggagcagttggtgaaacagaatcatgctgcacaggaaactcagccatcttctctagtcgtatataactgtgatctatcgcaaggttgctttgaagaaaaaatcagaattttgctgcaaagactagcagaagctgaggatctagccgagcaaatcggttctcagactgttcagcatacttggattctggaatctattgctgcatgtaaattggtacctttctgctaatgagtgatcgcaacaagttttttgtgcaactgaaatacttccacttatggcagaagaacaaaagtagttgtacattttctgcacctggaaaatatagttgaaaatcttaaatgctaaaattttgtgtataaatgtgaaagagatattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017L21.1" temp_strand="-" temp_description="C09SLm0017L21.1  AC233068.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0017L21 upload_account_name:spain (1 - 127674)">
        <position start="107801" stop="105723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107452" g_stop="107122" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="405" r_length="332" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107121" i_stop="106786" i_length="336">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106785" g_stop="106667" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106666" i_stop="106511" i_length="156">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.893" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106510" g_stop="106032" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="1006" r_length="482" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1014" polyA_stop="1032"/>
      <MATCH_line gen_id="C09SLm0017L21.1" gen_strand="-" ref_id="SGN-U318277" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107452" e_stop="107122"/>
          <exon e_start="106785" e_stop="106667"/>
          <exon e_start="106510" e_stop="106032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTATGGTATTTGTACTTTAGCCTACATTAATGCCCTTTTA-TTTGAGAAAGCTTTTGAAGTAAAACAAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCAAAAATGGTGCATTTCGGACATTATTAATCCATTGTATT-GTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGATATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCCTAACTATGGACTGTAAGCACTGTTTCCTGTTTATATAAAATTGTTTGTGGGATAGGTTTTTCATTTGGTTCTCCATGGAATGTGGGTGAACGTTCAATCGCCATTAAATCAAGAAATGCAATAAAGTAGAATGTGTGGGGATATAAGAGTAAGTTGTTTTGGTGTTGAGGTAAGAGAAGGAAATACCTGAATACATGTGTGACTTCTCCAGAGCCACTTTGAATGCGTGGACTTTTTTTGGAAATAGTTTGCTTGGCCTGGGTCAACAGTTAATTAGTTGTCTAATAAAGAAGGATTTTTTTTTTATTTTAATTCCATTCTCCTACCATGGAACTTGTTTATTTGCAGGGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGAGGGCCTCAACTAATGTAAGTATCTGATTGTTGCAGAGCTAGAGAAACTAGTTTATTATATTCCTTGTGGATAAGCTTGACGGTTAAAGATTTTTTTTTCTGGTTTTCAACTGAGGTAGCACATATTAAAAGCTGTAGTATCCAGTAAACAATTATTCCTTCATGTTACAGGCGCCAAAGCTTTTTGATGGTTTCAAGTTTTATTTGGTTGGAGATTTTATGCCAGCTTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTATCATTCAGAGTGAAGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACTCAGCCATCTTCTCTAGTCGTATACAACTGTGATCTCTCGCAGGGTTGCACGTTTGAAGAAGAAAGCAGTATTTTGCAGCAAAGATTAGCTGAAGCTGAGGATCTAGCCAAGCAAATCTGTTTTCATACCGTTCAGCATACTTGGATTCTTGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCTGCAAGTTTTTTGTGCAACTGAAATACTTCCATTTGTGGTAGAAGAGCAAAAGTA---GTACATTTTCTGCACCTGAGAAATATAGTTG-AAAT-TTAGATGCT-AAATTTTGTGTATAAACGTGAGAG</genome_strand>
        <mrna_strand>TTACTTGTATGGTATTTGTACTTTAGCCTACTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAA-TAAATTTTTACTTCTTTTTGCTTGGAATTGTTAGCTGAAAATGGTGCGTTTCAGACATTATTAATCCATCGTATTGGTTTTTTGACATTTTGCAGTACATGTTGGTGAAATTTGATGATATGTGTGGTGCAACTGCGTGCAAGTTCTGGAGACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAATTTCTCATGGCGATTTTGAGTGGAAAATGGATCCCAACTATGGACT................................................................................................................................................................................................................................................................................................................................................GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAAT............................................................................................................................................................GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCAGTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTG--C-TTTGAAGAAAAAATCAGAATTTTGCTGCAAAGACTAGCAGAAGCTGAGGATCTAGCCGAGCAAATCGGTTCTCAGACTGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTAATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTATGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGAAAATATAGTTGAAAATCTTAAATGCTAAAATTTTGTGTATAAATGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336455" ref_strand="+" ref_description="SGN-U336455        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G04020.1 | Symbol: ATBRCA1 | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein, contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain | chr1:1036559-1040223 FORWARD | Aliases: F21M11.4, F21M11_4, ATBRCA1 (evalue: 4e-47, score=185) genbank/nr: gi|42571335|ref|NP_973758.1| zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana] (evalue: 3e-45, score=185)">
      <seq>ggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggcaagatcatcagatggaccaaaagaatgggttctttgtgggtctgctctatcctcagaagataagtacatgttggtgaaatttgatgatatgtgtggtgcaactgcgtgcaagttctggagaccaaatgtcacacatgttgttgcaacaactgatgtaaagggtgcatgcaccagaacaatgaaatttctcatggcgattttgagtggaaaatggatcccaactatggactgggtaaaagcttgtgttgcagcaaatggtccagtaaatgaagaacattatgaaataagtctagtcaattatggccgttctgggggccccaaagctggaaggttaatggcctcagctaatgggccaaagctttttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctgttagatctagtcgagaaggctggaggcacagtcattcagagtgaggagcagttggtgaaacagaatcatgctgcacagggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017L21.1" temp_strand="-" temp_description="C09SLm0017L21.1  AC233068.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0017L21 upload_account_name:spain (1 - 127674)">
        <position start="113317" stop="106055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113017" g_stop="112991" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112990" i_stop="107860" i_length="5131">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107859" g_stop="107769" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="118" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107768" i_stop="107288" i_length="481">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107287" g_stop="107122" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="284" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107121" i_stop="106786" i_length="336">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106785" g_stop="106667" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="403" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106666" i_stop="106511" i_length="156">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.893" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106510" g_stop="106355" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="559" r_length="156" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017L21.1" gen_strand="-" ref_id="SGN-U336455" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113017" e_stop="112991"/>
          <exon e_start="107859" e_stop="107769"/>
          <exon e_start="107287" e_stop="107122"/>
          <exon e_start="106785" e_stop="106667"/>
          <exon e_start="106510" e_stop="106355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCATCCAAAGGCTTCTCCCCTTTAAGAAGAGTATATTAAGGCACTTGCTATTTTGTTTTCTATCAGCTCTTAAATTTTTGGTAGTTGTTGAGAATGATGAAAACATCATTATGTCAATTTTAAAATCTGTCTACTACTAATTCAATCTACCCACTTGCCTTAAACTCCTTGGTTTAAGTTTTGTCAATTTTGAAAATGGTGTAGCTTCCTAGTACCATCAATATTTTATACTGGTTTTCGTTTTCTAGATATAAATAATGTACACTACTACTTTGACTTCAAATAATAACATTATTATTTATAAAAAGAAGAATTAATTCTAGTTAACTAGATGTTAGGCCTTGCTCAAAAAAAACCACAAGATGTTAGGCATTTGTTTGCAATACATTACTTTGGAGGTTGTTGTAAAAAACTTTTTTTAAAAGAGAAAATAGTCAATTGCCTCACAACCTATTAGCCAATACCAACTTCACACCTATGATTCATGGGTACCTCTTGAACCATTTTAAAGTGAAATTGATTCCACCCTTAAATGTCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACGCGTGTATTTCATTAGTTAATTTTTTTTTCCTCCTTCATCTTCCTTTCTTCTTCAATCATTATTTCAGCCTTAATCACTATAAAACACCATTTGTTTTACCTCAAAAAATTCATGTGTCTAACAAATCAGAATCAAATCTAATGCACTACTTTATTAAATAAAAAATTATTGCCATCTTCTCTGAGCCATCACTTGTGAAGTTCCAAATAGAGTTTCTTCGGCTCTACAAACTTCAATGACTCCCCCCCCCCCCCCCCAACTCTCACAGACATCTTTTTGTAGTCAAAATGAACTTGTAACGTCAATTTAAAAAACCCCTCATTCTTAGTCTCTCCAAAATATTCATGAACATGTTATAATATGAGTTTGGTTTTGATTCTTAGTGGGTTCTTCAAAAAATGTGGATGATAGTGAGTTATGACTACCTAGTACCTTCTGCATGTAGCAGTTGTTTCCATTTCAGTTCCTTCTAATAAGTTCAAAAACAACAACCTATTTGCTTTTTCTCTTTGTTATTGTTACTCTTCAGTCAATGGCTTAGAAAGAGGAAAATTAATGGGTATGCCTTTTAAAAATGGATTTGATTTATTAGATGTGTTCTAAACAAGTCTATTCAAGAATTATGTTCATAAATGCATCAATTGCTGGTAATTTCTATGCCCGACATTCATGGATGAAGCTTCAACAATGATAATGGTGGAGGAGATATAGTTGTTTAGGTAAATAACGAGAAAGAGAAAGAACAAGAAAAAGAGAAGGAGAAAAATTCTAAAAAAAAAAAGGAAACATATTCTCTTTAAGAGAGTGCAATGCATTCTCTGTGCCAACTCAACAGTTGAGGGTTTATTTATTCCATTTAAAGTAGTCCAAGGGGTAATAGGACCCTGTGAAGTATATATGTGTTGGTCATTAGCTAATAGGTTGTGGGACAGGGCATGCATTTGACTGGTTTTTCTTTATTAATATGAAGATGTGACGAGTTTAATTTCAGCGTTCTAAAATATTTTTGGTAAACATAGATAGTTTTTCTTTTTATCTTTTTATATAAATTTTGTACCTTTTCTATATCATCTTCAATATTGTTTTAACAATAACATACCCGGTGGAATCTCACTAGTGGGTTTGGGGATGGTAGAGTGTACGCAAACCTTAACAGTACATCTTGGAGATAGAGATGTTGTTTTAGACTGCCCCTTGACTTGAGTCCAACATATCTTGTACAAAGAGGAATAATATTATTTTGAATGAAAAATATCACTACAATTTTTTTGGGCCTAAACGATGATTCAAGGTTGTGGTTGGCGTAGGAACTAGGCGGAGCGGTAGTGGAGCTCAGGTTGTAATGCAAGTGCACAGTGAGTGTAATATCTCCTCAGACACGCTCTTTCTACAAGCAAGCAAAGAGCTAGTATGGGTTTGGAATGGAATATCATATGTATTGTTGAATCCAACTTGAAGCTCTTTTGAACAAGCGAGGAATGAATGACCTGTCACGACCCAAAAAGGGATGTGATGGTACTCGTCTTATCCCACCAAGATAAGTCAGCCTAAAATCCAACCATTACGATAAATTGTGGAAATAAAATGATAATAAAAGTCCAAAATTATAAAATAATGCGGAAATTCATAATCAACTTCAATATAACTCAAAACCTGGTTGTCACGTACACAAGCCTCTAATGTATTACACTAGATAAAAAGAAAACATAAGTCTCAAATGATGTTGCATAAGTCTCAATTCACAACGACACAATTGTGACACATAAAAAATGAATTAATATGCCTTTCAAAATCATCCTCAACACATCACACCAAAAATTAATCATATTGCCTTTTATTACCCTTTTTTTATACATTATAATTATTCAATATGGACAAATCAACCTATCACCAAGTCTCATTACTCCCAAACACATACTATAAGGAAATACACGATTTCATACACTTAACAAGTGTTTAGAAATCCACTAGCCTCAAATAATTGAGCTAATACTTTGAGACTTGAGTCGTCCCCTTTCATAAAGCTTCAAAGAGCTTCTAATCTATCAAATCTATAATCATCATAAGAATATGAATGTATGACACCCATATTACTATATTTAGTTTCAAATTGAAAATCGGGTCAAAAAGTCATTCCGAGCCACCAAATTTGAATTTAAAAATTTCTTTTAGATTATGTTTACCCATGATAAACAAACTCGCATGCAAAGTTTCAGCTAAAACAGATCATTATTCGACCCCAAACTAAGATTTTATTCTAAGAAGCCTAGACATATGTTTTCTTATTTAGCAGTTATACACGTTTTTATCCTAAAAATCTATTCATAATTGCATAAAAATTTAACGAAAAGGATGAGAAAAACATTACCTTGACGCTTTGGGATGAAAATCCCAATTTTTCTCCTCTCTTTTTCTCCCTTTTTTTTTTCGTCTGAGTAATTTTTTTTCCTCTGTTGGGTAACTAACCTGAAAAGATAACATGTTCATAAAGTATCTCAAACCATTGTCAACCTCATCATTTCAATATCCTCAAAATACATCATCGAGTCATCACCTTACTCATCCCCTTCAAAATGCTGAACATTCTAAATCTAACCACGCATTCCTTTCATAGCCTTAAACTAAGATTGAAGTGATAGACTTATGAAAAGGATGCGTGGTTAGATCCGGAATGTTCAACAATTGGAAGGGGCGTTGAGTAAGGTCATGACTCAATGATGTATTTTGAGGATATTGGAATGATGAGGTTGACAATGGTTTGAAATACTTTATGAACATGTTATCTTTTCAGATTAACTACCCAACAAAGGAAAAAAAAGAAAGGGAGAAAAAGAGGGGGAAATAGGGGAGAAAATTAGGATTTTCATAAAGCGTTAAGGTAATGCTTCTCGTCCTTTCCATTAAATTTTTATGTGATTATAAACAAATTTTTAGGTTAAAAACGTGTATAACTTATGCTAAATTAAGAAAATATAGGTCTTAGAGTTCTTAAAACAAAATTTTGGTTTGGGGGTCGAATAAGGATCCATTTTAAGCTGAAATTTCGCATGCGAATTTGTTTATCATGGGTAAACATAATCTGAAAATTAATTTCTAAGTCAAATTTGGTGGTTCAGAATGACTTTTTGACCCGATTTTCAAGCTAAAACAAAATATATTACCATGAGTGTCATTTTATTCATATTCTTATGATGATTATATAGTTGATAGATTGGAAGCACTTTGAAGCCTATGCCCTATGAAGGGTAAGACTCAAGTCCCGAAGTAATTGCTCAATTGTTCGAGGCAAGTAGATTTCTAAACCCTTGTTAAGTGTATAAAATCGCGTATTTCCTTGTAGTATGTGTTTGGAGTAATGAGACTTGGTGATGGGTTGACTAGTCCATATTGAATAATCCTAATGTATGAAAAAGGGGTAATAAAAGGCAACGCGATTAATTTTTGGTGTGTGATGTGTTGAGAATGATTTCAAAAGGCTTATTGATTCATTTTGATGTTGTATCACGTTTGTGTGTGGATGATGCATTGTTATGAAAATGGTCATCTCCTTATTATTTGTGTGAGCATGTCATTTGCATTGGTTGTGTTATGTGAACTGAGGAAGAATAAGAAATTAAAGAGGACGTACCATTTCAAGGGACGAGTCGCGTGCCAAGATGGATAATATGATTCGAGAGGTGTGTCTCACGCTACATCACATTCTTATATCGAGGGACGTGTCGCACCTTGCGACGGATTTAACTGTTGAGGATCGTGCTGCGATGGATGCATGGACAGATATGTCCCCCATGGGTCTCGAACCGACGTTAGGTTAGACATGCATCACTATACTTGACATTGCATTTTTATTGTATTGCATATCTATTATCATTTGTGAACTTGTGAGTGCCTTTTGTGGAACTTGTTATTGATGAACTTGACTCCGTGTGCTGCTGATTTGTTATTATTAGTGTTGTTGAATTATAGGCTATTGAAATTGTGAACTATTTGTTACGCGAAGCCGTAAAAAGGAACTGCTCGAGTTGCTGGTATAATTAGGTTTCACTATGCTCTTGATAAGTAAGTGTATCTCATCCTCTTGTCATGTGGAAAAGAGGCTTGTTAAGGTATTAGTATGTCTAATAGGAGTATCTTCACATACATATGCACACTAGAAGAGATGTGCATCTGTTTAGGTTTTAACAGTGTATTTAAATACTTAAATTGAGTAGTCCATTATGATTTATCCACTAGTGAACTGTTTTGTTATCTCTTTCCTCTTAGACCTTGAATGAAGTAATATCCTTGTCAAGAAGTTAGCTAGCATATCTATTGGAACATATGGATATCAAGCTCTGTTAAATGAAGGAAGCCACATAATATTGGGGTTTATTAGTTGAAGAGCTTCATATTAATTCATGAAATACACAACAAAACTTGCTTGTATACTATAACACATCACTTTTTTTTTATGTAAATCGAAGGACAATTGTGATATGTGGAGTCATTAGAATATGAGGGTAATTGTCCTGAATTGTCCTCATCTATAAGCAACTCCATAACTCTCTTCCTTTTTGACCATTGTGCATGCAGAACCATCGACCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAGGTTGGTTTATCTTTCTGCAGTGACTATATCATCTGCTAGTTCTATCATATGTCCCTTGTATCTATTTTAAGACTGTTTGATCAGTCTTAAAATCATGTATGCAGTTACAAGTCACATGGAGAACTGCCATTAGCATGTTTCCAGTCAAACCCTTTGTTTATTTGATTATTTCAGCTCTCTGGTATACCAGAGGAGTCAACTTATCATGGTCTGCGATGGTTTAACTCTACGTTTGTCAACATTAAGTTGATGGCTTAGTCCTGGTTGATCATTGATGCATGTCCTGGAATAGCAATGTATGAAAGATCCACTTATTTTACTTGTATGGTATTTGTACTTTAGCCTACATTAATGCCCTTTTATTTGAGAAAGCTTTTGAAGTAAAACAAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCAAAAATGGTGCATTTCGGACATTATTAATCCATTGTATTGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGATATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCCTAACTATGGACTGTAAGCACTGTTTCCTGTTTATATAAAATTGTTTGTGGGATAGGTTTTTCATTTGGTTCTCCATGGAATGTGGGTGAACGTTCAATCGCCATTAAATCAAGAAATGCAATAAAGTAGAATGTGTGGGGATATAAGAGTAAGTTGTTTTGGTGTTGAGGTAAGAGAAGGAAATACCTGAATACATGTGTGACTTCTCCAGAGCCACTTTGAATGCGTGGACTTTTTTTGGAAATAGTTTGCTTGGCCTGGGTCAACAGTTAATTAGTTGTCTAATAAAGAAGGATTTTTTTTTTATTTTAATTCCATTCTCCTACCATGGAACTTGTTTATTTGCAGGGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGAGGGCCTCAACTAATGTAAGTATCTGATTGTTGCAGAGCTAGAGAAACTAGTTTATTATATTCCTTGTGGATAAGCTTGACGGTTAAAGATTTTTTTTTCTGGTTTTCAACTGAGGTAGCACATATTAAAAGCTGTAGTATCCAGTAAACAATTATTCCTTCATGTTACAGGCGCCAAAGCTTTTTGATGGTTTCAAGTTTTATTTGGTTGGAGATTTTATGCCAGCTTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTATCATTCAGAGTGAAGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACT</genome_strand>
        <mrna_strand>GGAAATGCATCCAAAGGCTTCTCCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGTTGGTGAAATTTGATGATATGTGTGGTGCAACTGCGTGCAAGTTCTGGAGACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAATTTCTCATGGCGATTTTGAGTGGAAAATGGATCCCAACTATGGACT................................................................................................................................................................................................................................................................................................................................................GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACATTATGAAATAAGTCTAGTCAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTAATGGCCTCAGCTAAT............................................................................................................................................................GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACAGTCATTCAGAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332633" ref_strand="+" ref_description="SGN-U332633        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttaatttttggtgtgtgatgtgttgagaatgatttcaaaaggcttattgattcattttgatgttgtatcacgtttgtgtgtggatgatgcattgttatgaaaatggtcatctccttattatttgtgtgagcatgtcatttgcattggttgtgttatgtgaactgaggaagaataagaaattaaagaggacgtaccatttcaagggacgagtcgcgtgccaagatggataatatgattcgagaggtgtgtctcacgctacatcacattcttatatcgagggacgtgtcgcaccttgcgacggatttaactgttgaggatcgtgctgcgatggatgcatggacagatatgtcccccatgggtctcgaaccgacgttaggttagacatgcatcactatacttgacattgcatttttattgtattgcatatctattatcatttgtgaacttgtgagtgccttttgtggaacttgttattgatgaacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017L21.1" temp_strand="-" temp_description="C09SLm0017L21.1  AC233068.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0017L21 upload_account_name:spain (1 - 127674)">
        <position start="109297" stop="108211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108997" g_stop="108511" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017L21.1" gen_strand="-" ref_id="SGN-U332633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108997" e_stop="108511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTTTGGTGTGTGATGTGTTGAGAATGATTTCAAAAGGCTTATTGATTCATTTTGATGTTGTATCACGTTTGTGTGTGGATGATGCATTGTTATGAAAATGGTCATCTCCTTATTATTTGTGTGAGCATGTCATTTGCATTGGTTGTGTTATGTGAACTGAGGAAGAATAAGAAATTAAAGAGGACGTACCATTTCAAGGGACGAGTCGCGTGCCAAGATGGATAATATGATTCGAGAGGTGTGTCTCACGCTACATCACATTCTTATATCGAGGGACGTGTCGCACCTTGCGACGGATTTAACTGTTGAGGATCGTGCTGCGATGGATGCATGGACAGATATGTCCCCCATGGGTCTCGAACCGACGTTAGGTTAGACATGCATCACTATACTTGACATTGCATTTTTATTGTATTGCATATCTATTATCATTTGTGAACTTGTGAGTGCCTTTTGTGGAACTTGTTATTGATGAACTTGAC</genome_strand>
        <mrna_strand>TTAATTTTTGGTGTGTGATGTGTTGAGAATGATTTCAAAAGGCTTATTGATTCATTTTGATGTTGTATCACGTTTGTGTGTGGATGATGCATTGTTATGAAAATGGTCATCTCCTTATTATTTGTGTGAGCATGTCATTTGCATTGGTTGTGTTATGTGAACTGAGGAAGAATAAGAAATTAAAGAGGACGTACCATTTCAAGGGACGAGTCGCGTGCCAAGATGGATAATATGATTCGAGAGGTGTGTCTCACGCTACATCACATTCTTATATCGAGGGACGTGTCGCACCTTGCGACGGATTTAACTGTTGAGGATCGTGCTGCGATGGATGCATGGACAGATATGTCCCCCATGGGTCTCGAACCGACGTTAGGTTAGACATGCATCACTATACTTGACATTGCATTTTTATTGTATTGCATATCTATTATCATTTGTGAACTTGTGAGTGCCTTTTGTGGAACTTGTTATTGATGAACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344806" ref_strand="+" ref_description="SGN-U344806        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttaattctagttatctagatgttaggccttgctcaaaaaaaacggcaagatgttaggcatttgtttgcaatacattactttggaggttgttgtaaaaaactttttttaaaagagaaaatagtcaattgcctcacaacctattagccaataccaacttcacacctatgattcatgggtacctcttgaaccattttaaagtgaaattgattccacccttaaatgtcataatcagtcatgtgttttatggtgaaatacacacgcttgacgcgtgtatttcattagttaatttttttttcctccttcatcttcctttcttcttcaatcattatttcagccttaatcactataaaacaccatttgttttacctcaaaaaattcatgtgtctaacaaatcagaatcaaatctaatgcactactttattaaataaaaaattattgccatcttctctgagccatcacttgtgaagttccaaatagagtttcttcggctctacaaacttcaatgactccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017L21-mr9UK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017L21.1" temp_strand="-" temp_description="C09SLm0017L21.1  AC233068.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0017L21 upload_account_name:spain (1 - 127674)">
        <position start="112998" stop="111882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112698" g_stop="112182" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017L21.1" gen_strand="-" ref_id="SGN-U344806" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112698" e_stop="112182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTAGTTAACTAGATGTTAGGCCTTGCTCAAAAAAAACCACAAGATGTTAGGCATTTGTTTGCAATACATTACTTTGGAGGTTGTTGTAAAAAACTTTTTTTAAAAGAGAAAATAGTCAATTGCCTCACAACCTATTAGCCAATACCAACTTCACACCTATGATTCATGGGTACCTCTTGAACCATTTTAAAGTGAAATTGATTCCACCCTTAAATGTCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACGCGTGTATTTCATTAGTTAATTTTTTTTTCCTCCTTCATCTTCCTTTCTTCTTCAATCATTATTTCAGCCTTAATCACTATAAAACACCATTTGTTTTACCTCAAAAAATTCATGTGTCTAACAAATCAGAATCAAATCTAATGCACTACTTTATTAAATAAAAAATTATTGCCATCTTCTCTGAGCCATCACTTGTGAAGTTCCAAATAGAGTTTCTTCGGCTCTACAAACTTCAATGACTCCCCCCCCC</genome_strand>
        <mrna_strand>TTAATTCTAGTTATCTAGATGTTAGGCCTTGCTCAAAAAAAACGGCAAGATGTTAGGCATTTGTTTGCAATACATTACTTTGGAGGTTGTTGTAAAAAACTTTTTTTAAAAGAGAAAATAGTCAATTGCCTCACAACCTATTAGCCAATACCAACTTCACACCTATGATTCATGGGTACCTCTTGAACCATTTTAAAGTGAAATTGATTCCACCCTTAAATGTCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACGCGTGTATTTCATTAGTTAATTTTTTTTTCCTCCTTCATCTTCCTTTCTTCTTCAATCATTATTTCAGCCTTAATCACTATAAAACACCATTTGTTTTACCTCAAAAAATTCATGTGTCTAACAAATCAGAATCAAATCTAATGCACTACTTTATTAAATAAAAAATTATTGCCATCTTCTCTGAGCCATCACTTGTGAAGTTCCAAATAGAGTTTCTTCGGCTCTACAAACTTCAATGACTCCCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="85779" PGL_stop="90902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85779" e_stop="86032"/>
            <exon e_start="90535" e_stop="90902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="85779" e_stop="86032" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86033" i_stop="90534" i_length="4502"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="90535" e_stop="90902" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85779" stop="86032"/>
              <exon start="90535" stop="90902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345337" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATGTTCAGGTTGATCCAGACAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGCTATGGTTCTTATTTGTTTGGTTACACGTTTTGGAATGTCAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTATCCTGTACAAGGACAGACAGAAGAAGGTTCTAAAGATTACAAAGCAAGTGGGAGTTGAAGTTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAA : CCAGATTCTATGTTACCTTCATTGATGATTTCAGCAGGAAGGTATGTGTTTAGTTCTTGAAGCATAAGTCAGATGTATTTGCAAGTTTCAAGAAGTGGAAAGCTGAAGTTGAGAATCAGACCTGTTTGAAAGTCAATTGCCTAAGGTCTGACAATAGAAGAGAGTATGACAAATCAGAGTTCAAGGCATTCTGTGCAGCTGAGGGAATCAGATTGATGAGAACAGTTCCTGGTAAGGCAAGGCAGAATGGAATTGCTGAAAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGAATACACTGTGGGCTGCCCAAAACACTTTGGGTGGATGCTGTGAGCACAGCTGCATACTTGATCAAC</gDNA_template>
            <first_frame> L  M  F  R  L  I  Q  T  R  E  T  S  L  M  P  R  L  *  S  V  T  S  *  A  M  V  L  I  C  L  V  T  R  F  G  M  S  R  T  E  R  S  *  D  I  V  T  *  H  L  M  S  L  S  C  T  R  T  D  R  R  R  F  *  R  L  Q  S  K  W  E  L  K  L  S  W  R  R  V  T  P  E  M  S  N :   Q  I  L  C  Y  L  H  *  *  F  Q  Q  E  G  M  C  L  V  L  E  A  *  V  R  C  I  C  K  F  Q  E  V  E  S  *  S  *  E  S  D  L  F  E  S  Q  L  P  K  V  *  Q  *  K  R  V  *  Q  I  R  V  Q  G  I  L  C  S  *  G  N  Q  I  D  E  N  S  S  W  *  G  K  A  E  W  N  C  *  K  D  E  Q  N  I  E  *  A  C  K  E  Y  E  N  T  L  W  A  A  Q  N  T  L  G  G  C  C  E  H  S  C  I  L  D  Q  </first_frame>
            <second_frame>  L  C  S  G  *  S  R  Q  E  R  Q  A  *  C  Q  G  C  E  V  L  L  H  R  L  W  F  L  F  V  W  L  H  V  L  E  C  Q  E  Q  K  D  P  E  T  L  *  R  D  I  *  *  V  Y  P  V  Q  G  Q  T  E  E  G  S  K  D  Y  K  A  S  G  S  *  S  *  V  G  E  E  *  P  Q  R  C  R   : T  R  F  Y  V  T  F  I  D  D  F  S  R  K  V  C  V  *  F  L  K  H  K  S  D  V  F  A  S  F  K  K  W  K  A  E  V  E  N  Q  T  C  L  K  V  N  C  L  R  S  D  N  R  R  E  Y  D  K  S  E  F  K  A  F  C  A  A  E  G  I  R  L  M  R  T  V  P  G  K  A  R  Q  N  G  I  A  E  R  M  N  R  T  L  N  E  R  A  R  S  M  R  I  H  C  G  L  P  K  T  L  W  V  D  A  V  S  T  A  A  Y  L  I  N </second_frame>
            <third_frame>   Y  V  Q  V  D  P  D  K  R  D  K  L  D  A  K  A  V  K  C  Y  F  I  G  Y  G  S  Y  L  F  G  Y  T  F  W  N  V  K  N  R  K  I  L  R  H  C  D  V  T  F  D  E  S  I  L  Y  K  D  R  Q  K  K  V  L  K  I  T  K  Q  V  G  V  E  V  E  L  E  K  S  N  P  R  D  V  E  :  P  D  S  M  L  P  S  L  M  I  S  A  G  R  Y  V  F  S  S  *  S  I  S  Q  M  Y  L  Q  V  S  R  S  G  K  L  K  L  R  I  R  P  V  *  K  S  I  A  *  G  L  T  I  E  E  S  M  T  N  Q  S  S  R  H  S  V  Q  L  R  E  S  D  *  *  E  Q  F  L  V  R  Q  G  R  M  E  L  L  K  G  *  T  E  H  *  M  S  V  Q  G  V  *  E  Y  T  V  G  C  P  K  H  F  G  W  M  L  *  A  Q  L  H  T  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017L21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90588" stop="90902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKHKSDVFASFKKWKAEVENQTCLKVNCLRSDNRREYDKSEFKAFCAAEGIRLMRTVPGKARQNGIAERMNRTLNERARSMRIHCGLPKTLWVDAVSTAAYLIN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017L21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85781" stop="86032"/>
                    <exon start="90535" stop="90594"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVQVDPDKRDKLDAKAVKCYFIGYGSYLFGYTFWNVKNRKILRHCDVTFDESILYKDRQKKVLKITKQVGVEVELEKSNPRDVEPDSMLPSLMISAGRYVFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="113017" PGL_stop="106032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113017" e_stop="112991"/>
            <exon e_start="107859" e_stop="107769"/>
            <exon e_start="107287" e_stop="107122"/>
            <exon e_start="106785" e_stop="106667"/>
            <exon e_start="106510" e_stop="106355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.962" e_score="0.978"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.997" acc_prob="0.893" e_score="0.958"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113017" e_stop="112991" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="112990" i_stop="107860" i_length="5131"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="107859" e_stop="107769" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.962">
            <gDNA_intron_boundary i_start="107768" i_stop="107288" i_length="481"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="107287" e_stop="107122" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107121" i_stop="106786" i_length="336"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="106785" e_stop="106667" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.893">
            <gDNA_intron_boundary i_start="106666" i_stop="106511" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="0.949">
            <gDNA_exon_boundary e_start="106510" e_stop="106355" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113017" stop="112991"/>
              <exon start="107859" stop="107769"/>
              <exon start="107287" stop="107122"/>
              <exon start="106785" stop="106667"/>
              <exon start="106510" stop="106355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAATGCATCCAAAGGCTTCTCCCCT : AACCATCGACCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG : TATATGTTGGTGAAATTTGCTGATATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCCTAACTATGGACT : GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGAGGGCCTCAACTAAT : GCGCCAAAGCTTTTTGATGGTTTCAAGTTTTATTTGGTTGGAGATTTTATGCCAGCTTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTATCATTCAGAGTGAAGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACT</gDNA_template>
            <first_frame> G  N  A  S  K  G  F  S  P  :  N  H  R  P  I  D  F  L  G  K  I  I  R  W  T  K  R  M  G  S  L  W  V  C  S  I  L  R  R  *   : V  Y  V  G  E  I  C  *  Y  V  W  C  N  C  V  Q  V  L  E  T  K  C  H  T  C  C  C  N  N  *  C  K  G  C  M  H  Q  N  N  E  S  S  H  G  D  F  E  W  K  M  D  P  N  Y  G  L :   G  K  S  L  C  C  S  K  W  S  S  K  *  R  T  L  *  N  K  S  R  Q  L  W  P  F  W  G  P  Q  S  W  K  V  E  G  L  N  *   : C  A  K  A  F  *  W  F  Q  V  L  F  G  W  R  F  Y  A  S  L  Q  K  *  P  V  R  S  S  R  E  G  W  R  H  Y  H  S  E  *  R  A  V  G  E  T  E  S  C  C  T  G  N  </first_frame>
            <second_frame>  E  M  H  P  K  A  S  P  L :   T  I  D  Q  L  T  F  W  A  R  S  S  D  G  P  K  E  W  V  L  C  G  S  A  L  S  S  E  D  K  :  Y  M  L  V  K  F  A  D  M  C  G  A  T  V  C  K  F  W  K  P  N  V  T  H  V  V  A  T  T  D  V  K  G  A  C  T  R  T  M  K  V  L  M  A  I  L  S  G  K  W  I  L  T  M  D   : W  V  K  A  C  V  A  A  N  G  P  V  N  E  E  L  Y  E  I  S  L  D  N  Y  G  R  S  G  G  P  K  A  G  R  L  R  A  S  T  N  :  A  P  K  L  F  D  G  F  K  F  Y  L  V  G  D  F  M  P  A  Y  K  S  D  L  L  D  L  V  E  K  A  G  G  T  I  I  Q  S  E  E  Q  L  V  K  Q  N  H  A  A  Q  G  T </second_frame>
            <third_frame>   K  C  I  Q  R  L  L  P   : *  P  S  T  N  *  L  F  G  Q  D  H  Q  M  D  Q  K  N  G  F  F  V  G  L  L  Y  P  Q  K  I  S :   I  C  W  *  N  L  L  I  C  V  V  Q  L  C  A  S  S  G  N  Q  M  S  H  M  L  L  Q  Q  L  M  *  R  V  H  A  P  E  Q  *  K  F  S  W  R  F  *  V  E  N  G  S  *  L  W  T  :  G  *  K  L  V  L  Q  Q  M  V  Q  *  M  K  N  F  M  K  *  V  *  T  I  M  A  V  L  G  A  P  K  L  E  G  *  G  P  Q  L  M :   R  Q  S  F  L  M  V  S  S  F  I  W  L  E  I  L  C  Q  L  T  K  V  T  C  *  I  *  S  R  R  L  E  A  L  S  F  R  V  K  S  S  W  *  N  R  I  M  L  H  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113016" stop="112991"/>
                    <exon start="107859" stop="107769"/>
                    <exon start="107287" stop="107122"/>
                    <exon start="106785" stop="106667"/>
                    <exon start="106510" stop="106355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMHPKASPLTIDQLTFWARSSDGPKEWVLCGSALSSEDKYMLVKFADMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWILTMDWVKACVAANGPVNEELYEISLDNYGRSGGPKAGRLRASTNAPKLFDGFKFYLVGDFMPAYKSDLLDLVEKAGGTIIQSEEQLVKQNHAAQGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="107452" e_stop="107122"/>
            <exon e_start="106785" e_stop="106667"/>
            <exon e_start="106510" e_stop="106032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.934"/>
          <exon-intron don_prob="0.997" acc_prob="0.893" e_score="0.992"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="107452" e_stop="107122" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107121" i_stop="106786" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="106785" e_stop="106667" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.893">
            <gDNA_intron_boundary i_start="106666" i_stop="106511" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.891">
            <gDNA_exon_boundary e_start="106510" e_stop="106032" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107452" stop="107122"/>
              <exon start="106785" stop="106667"/>
              <exon start="106510" stop="106032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACTTGTATGGTATTTGTACTTTAGCCTACATTAATGCCCTTTTATTTGAGAAAGCTTTTGAAGTAAAACAAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCAAAAATGGTGCATTTCGGACATTATTAATCCATTGTATTGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGATATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCCTAACTATGGACT : GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGAGGGCCTCAACTAAT : GCGCCAAAGCTTTTTGATGGTTTCAAGTTTTATTTGGTTGGAGATTTTATGCCAGCTTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTATCATTCAGAGTGAAGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACTCAGCCATCTTCTCTAGTCGTATACAACTGTGATCTCTCGCAGGGTTGCACGTTTGAAGAAGAAAGCAGTATTTTGCAGCAAAGATTAGCTGAAGCTGAGGATCTAGCCAAGCAAATCTGTTTTCATACCGTTCAGCATACTTGGATTCTTGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCTGCAAGTTTTTTGTGCAACTGAAATACTTCCATTTGTGGTAGAAGAGCAAAAGTAGTACATTTTCTGCACCTGAGAAATATAGTTGAAATTTAGATGCTAAATTTTGTGTATAAACGTGAGAG</gDNA_template>
            <first_frame> L  L  V  W  Y  L  Y  F  S  L  H  *  C  P  F  I  *  E  S  F  *  S  K  T  K  L  *  L  L  F  V  W  N  C  *  P  K  M  V  H  F  G  H  Y  *  S  I  V  L  F  F  D  I  L  Q  Y  M  L  V  K  F  A  D  M  C  G  A  T  V  C  K  F  W  K  P  N  V  T  H  V  V  A  T  T  D  V  K  G  A  C  T  R  T  M  K  V  L  M  A  I  L  S  G  K  W  I  L  T  M  D   : W  V  K  A  C  V  A  A  N  G  P  V  N  E  E  L  Y  E  I  S  L  D  N  Y  G  R  S  G  G  P  K  A  G  R  L  R  A  S  T  N  :  A  P  K  L  F  D  G  F  K  F  Y  L  V  G  D  F  M  P  A  Y  K  S  D  L  L  D  L  V  E  K  A  G  G  T  I  I  Q  S  E  E  Q  L  V  K  Q  N  H  A  A  Q  G  T  Q  P  S  S  L  V  V  Y  N  C  D  L  S  Q  G  C  T  F  E  E  E  S  S  I  L  Q  Q  R  L  A  E  A  E  D  L  A  K  Q  I  C  F  H  T  V  Q  H  T  W  I  L  E  S  I  A  A  C  K  L  V  P  F  C  *  *  V  I  A  A  S  F  L  C  N  *  N  T  S  I  C  G  R  R  A  K  V  V  H  F  L  H  L  R  N  I  V  E  I  *  M  L  N  F  V  Y  K  R  E   </first_frame>
            <second_frame>  Y  L  Y  G  I  C  T  L  A  Y  I  N  A  L  L  F  E  K  A  F  E  V  K  Q  N  C  N  F  F  L  F  G  I  V  S  Q  K  W  C  I  S  D  I  I  N  P  L  Y  C  F  L  T  F  C  S  I  C  W  *  N  L  L  I  C  V  V  Q  L  C  A  S  S  G  N  Q  M  S  H  M  L  L  Q  Q  L  M  *  R  V  H  A  P  E  Q  *  K  F  S  W  R  F  *  V  E  N  G  S  *  L  W  T  :  G  *  K  L  V  L  Q  Q  M  V  Q  *  M  K  N  F  M  K  *  V  *  T  I  M  A  V  L  G  A  P  K  L  E  G  *  G  P  Q  L  M :   R  Q  S  F  L  M  V  S  S  F  I  W  L  E  I  L  C  Q  L  T  K  V  T  C  *  I  *  S  R  R  L  E  A  L  S  F  R  V  K  S  S  W  *  N  R  I  M  L  H  R  E  L  S  H  L  L  *  S  Y  T  T  V  I  S  R  R  V  A  R  L  K  K  K  A  V  F  C  S  K  D  *  L  K  L  R  I  *  P  S  K  S  V  F  I  P  F  S  I  L  G  F  L  N  L  L  L  H  V  N  W  Y  L  S  A  D  E  *  S  L  Q  V  F  C  A  T  E  I  L  P  F  V  V  E  E  Q  K  *  Y  I  F  C  T  *  E  I  *  L  K  F  R  C  *  I  L  C  I  N  V  R  </second_frame>
            <third_frame>   T  C  M  V  F  V  L  *  P  T  L  M  P  F  Y  L  R  K  L  L  K  *  N  K  I  V  T  S  F  C  L  E  L  L  A  K  N  G  A  F  R  T  L  L  I  H  C  I  V  F  *  H  F  A  V  Y  V  G  E  I  C  *  Y  V  W  C  N  C  V  Q  V  L  E  T  K  C  H  T  C  C  C  N  N  *  C  K  G  C  M  H  Q  N  N  E  S  S  H  G  D  F  E  W  K  M  D  P  N  Y  G  L :   G  K  S  L  C  C  S  K  W  S  S  K  *  R  T  L  *  N  K  S  R  Q  L  W  P  F  W  G  P  Q  S  W  K  V  E  G  L  N  *   : C  A  K  A  F  *  W  F  Q  V  L  F  G  W  R  F  Y  A  S  L  Q  K  *  P  V  R  S  S  R  E  G  W  R  H  Y  H  S  E  *  R  A  V  G  E  T  E  S  C  C  T  G  N  S  A  I  F  S  S  R  I  Q  L  *  S  L  A  G  L  H  V  *  R  R  K  Q  Y  F  A  A  K  I  S  *  S  *  G  S  S  Q  A  N  L  F  S  Y  R  S  A  Y  L  D  S  *  I  Y  C  C  M  *  I  G  T  F  L  L  M  S  D  R  C  K  F  F  V  Q  L  K  Y  F  H  L  W  *  K  S  K  S  S  T  F  S  A  P  E  K  Y  S  *  N  L  D  A  K  F  C  V  *  T  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107317" stop="107122"/>
                    <exon start="106785" stop="106667"/>
                    <exon start="106510" stop="106166"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIVLFFDILQYMLVKFADMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWILTMDWVKACVAANGPVNEELYEISLDNYGRSGGPKAGRLRASTNAPKLFDGFKFYLVGDFMPAYKSDLLDLVEKAGGTIIQSEEQLVKQNHAAQGTQPSSLVVYNCDLSQGCTFEEESSILQQRLAEAEDLAKQICFHTVQHTWILESIAACKLVPFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="108997" e_stop="108511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108997" e_stop="108511" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108997" stop="108511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATTTTTGGTGTGTGATGTGTTGAGAATGATTTCAAAAGGCTTATTGATTCATTTTGATGTTGTATCACGTTTGTGTGTGGATGATGCATTGTTATGAAAATGGTCATCTCCTTATTATTTGTGTGAGCATGTCATTTGCATTGGTTGTGTTATGTGAACTGAGGAAGAATAAGAAATTAAAGAGGACGTACCATTTCAAGGGACGAGTCGCGTGCCAAGATGGATAATATGATTCGAGAGGTGTGTCTCACGCTACATCACATTCTTATATCGAGGGACGTGTCGCACCTTGCGACGGATTTAACTGTTGAGGATCGTGCTGCGATGGATGCATGGACAGATATGTCCCCCATGGGTCTCGAACCGACGTTAGGTTAGACATGCATCACTATACTTGACATTGCATTTTTATTGTATTGCATATCTATTATCATTTGTGAACTTGTGAGTGCCTTTTGTGGAACTTGTTATTGATGAACTTGAC</gDNA_template>
            <first_frame> L  I  F  G  V  *  C  V  E  N  D  F  K  R  L  I  D  S  F  *  C  C  I  T  F  V  C  G  *  C  I  V  M  K  M  V  I  S  L  L  F  V  *  A  C  H  L  H  W  L  C  Y  V  N  *  G  R  I  R  N  *  R  G  R  T  I  S  R  D  E  S  R  A  K  M  D  N  M  I  R  E  V  C  L  T  L  H  H  I  L  I  S  R  D  V  S  H  L  A  T  D  L  T  V  E  D  R  A  A  M  D  A  W  T  D  M  S  P  M  G  L  E  P  T  L  G  *  T  C  I  T  I  L  D  I  A  F  L  L  Y  C  I  S  I  I  I  C  E  L  V  S  A  F  C  G  T  C  Y  *  *  T  *  </first_frame>
            <second_frame>  *  F  L  V  C  D  V  L  R  M  I  S  K  G  L  L  I  H  F  D  V  V  S  R  L  C  V  D  D  A  L  L  *  K  W  S  S  P  Y  Y  L  C  E  H  V  I  C  I  G  C  V  M  *  T  E  E  E  *  E  I  K  E  D  V  P  F  Q  G  T  S  R  V  P  R  W  I  I  *  F  E  R  C  V  S  R  Y  I  T  F  L  Y  R  G  T  C  R  T  L  R  R  I  *  L  L  R  I  V  L  R  W  M  H  G  Q  I  C  P  P  W  V  S  N  R  R  *  V  R  H  A  S  L  Y  L  T  L  H  F  Y  C  I  A  Y  L  L  S  F  V  N  L  *  V  P  F  V  E  L  V  I  D  E  L  D </second_frame>
            <third_frame>   N  F  W  C  V  M  C  *  E  *  F  Q  K  A  Y  *  F  I  L  M  L  Y  H  V  C  V  W  M  M  H  C  Y  E  N  G  H  L  L  I  I  C  V  S  M  S  F  A  L  V  V  L  C  E  L  R  K  N  K  K  L  K  R  T  Y  H  F  K  G  R  V  A  C  Q  D  G  *  Y  D  S  R  G  V  S  H  A  T  S  H  S  Y  I  E  G  R  V  A  P  C  D  G  F  N  C  *  G  S  C  C  D  G  C  M  D  R  Y  V  P  H  G  S  R  T  D  V  R  L  D  M  H  H  Y  T  *  H  C  I  F  I  V  L  H  I  Y  Y  H  L  *  T  C  E  C  L  L  W  N  L  L  L  M  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108814" stop="108617"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRTISRDESRAKMDNMIREVCLTLHHILISRDVSHLATDLTVEDRAAMDAWTDMSPMGLEPTLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="112698" e_stop="112182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="112698" e_stop="112182" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112698" stop="112182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATTCTAGTTAACTAGATGTTAGGCCTTGCTCAAAAAAAACCACAAGATGTTAGGCATTTGTTTGCAATACATTACTTTGGAGGTTGTTGTAAAAAACTTTTTTTAAAAGAGAAAATAGTCAATTGCCTCACAACCTATTAGCCAATACCAACTTCACACCTATGATTCATGGGTACCTCTTGAACCATTTTAAAGTGAAATTGATTCCACCCTTAAATGTCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACGCGTGTATTTCATTAGTTAATTTTTTTTTCCTCCTTCATCTTCCTTTCTTCTTCAATCATTATTTCAGCCTTAATCACTATAAAACACCATTTGTTTTACCTCAAAAAATTCATGTGTCTAACAAATCAGAATCAAATCTAATGCACTACTTTATTAAATAAAAAATTATTGCCATCTTCTCTGAGCCATCACTTGTGAAGTTCCAAATAGAGTTTCTTCGGCTCTACAAACTTCAATGACTCCCCCCCCC</gDNA_template>
            <first_frame> L  I  L  V  N  *  M  L  G  L  A  Q  K  K  P  Q  D  V  R  H  L  F  A  I  H  Y  F  G  G  C  C  K  K  L  F  L  K  E  K  I  V  N  C  L  T  T  Y  *  P  I  P  T  S  H  L  *  F  M  G  T  S  *  T  I  L  K  *  N  *  F  H  P  *  M  S  *  S  V  M  C  F  M  V  K  Y  T  R  L  T  R  V  F  H  *  L  I  F  F  S  S  F  I  F  L  S  S  S  I  I  I  S  A  L  I  T  I  K  H  H  L  F  Y  L  K  K  F  M  C  L  T  N  Q  N  Q  I  *  C  T  T  L  L  N  K  K  L  L  P  S  S  L  S  H  H  L  *  S  S  K  *  S  F  F  G  S  T  N  F  N  D  S  P  P  </first_frame>
            <second_frame>  *  F  *  L  T  R  C  *  A  L  L  K  K  N  H  K  M  L  G  I  C  L  Q  Y  I  T  L  E  V  V  V  K  N  F  F  *  K  R  K  *  S  I  A  S  Q  P  I  S  Q  Y  Q  L  H  T  Y  D  S  W  V  P  L  E  P  F  *  S  E  I  D  S  T  L  K  C  H  N  Q  S  C  V  L  W  *  N  T  H  A  *  R  V  Y  F  I  S  *  F  F  F  P  P  S  S  S  F  L  L  Q  S  L  F  Q  P  *  S  L  *  N  T  I  C  F  T  S  K  N  S  C  V  *  Q  I  R  I  K  S  N  A  L  L  Y  *  I  K  N  Y  C  H  L  L  *  A  I  T  C  E  V  P  N  R  V  S  S  A  L  Q  T  S  M  T  P  P  P </second_frame>
            <third_frame>   N  S  S  *  L  D  V  R  P  C  S  K  K  T  T  R  C  *  A  F  V  C  N  T  L  L  W  R  L  L  *  K  T  F  F  K  R  E  N  S  Q  L  P  H  N  L  L  A  N  T  N  F  T  P  M  I  H  G  Y  L  L  N  H  F  K  V  K  L  I  P  P  L  N  V  I  I  S  H  V  F  Y  G  E  I  H  T  L  D  A  C  I  S  L  V  N  F  F  F  L  L  H  L  P  F  F  F  N  H  Y  F  S  L  N  H  Y  K  T  P  F  V  L  P  Q  K  I  H  V  S  N  K  S  E  S  N  L  M  H  Y  F  I  K  *  K  I  I  A  I  F  S  E  P  S  L  V  K  F  Q  I  E  F  L  R  L  Y  K  L  Q  *  L  P  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112603" stop="112271"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFFKRENSQLPHNLLANTNFTPMIHGYLLNHFKVKLIPPLNVIISHVFYGEIHTLDACISLVNFFFLLHLPFFFNHYFSLNHYKTPFVLPQKIHVSNKSESNLMHYFIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 10664 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2132 bytes was the average size of a spliced alignment
$ 7192 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3596 bytes was the average size of a predicted gene location
$ 10 megabytes was the average size of the backtrace matrix
$ 55 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:44:02
-->
