<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-29 14:47:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312424" ref_strand="+" ref_description="SGN-U312424        Tomato 200607 #1 [208 ESTs aligned] arabidopsis/peptide: | Symbol: None | 12S seed storage protein (CRA1), nearly identical to SP:P15455 (Plant Mol Biol 11:805-820 (1988)); contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 | chr5:17773491-17775502 REVERSE | Aliases: None(evalue: 3e-86, score=316) genbank/nr: gi|5381325|gb|AAD42944.1| 11S globulin precursor [Sesamum indicum](evalue: 9e-157, score=556)">
      <seq>ggcgattggcggccaatcggccgaattcccatggggatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaatccaagatgttaattctctctgtgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157006" g_stop="156339" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="717" r_length="668" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="1179" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="154932" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1180" r_stop="1743" r_length="564" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1744" polyA_stop="1792"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-U312424" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1694</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157006" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="154932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAAAAAATCCAAGATGTTAATTCTCTCTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333551" ref_strand="+" ref_description="SGN-U333551        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 12S seed storage protein (CRB), identical to 12S seed storage protein, gi:808937 (SP:P15456) (Plant Mol Biol 11:805-820 (1988)); contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 | chr1:985755-988145 FORWARD | Aliases: F21M11.19, F21M11_19(evalue: 1e-28, score=124) genbank/nr: gi|5381325|gb|AAD42944.1| 11S globulin precursor [Sesamum indicum](evalue: 6e-57, score=224)">
      <seq>ctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagaatgttattctctctgtgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156959" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156659" g_stop="156339" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155854" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="525" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155853" i_stop="155274" i_length="580">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155273" g_stop="154932" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="867" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-U333551" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156659" e_stop="156339"/>
          <exon e_start="156057" e_stop="155854"/>
          <exon e_start="155273" e_stop="154932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</genome_strand>
        <mrna_strand>CTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGAATGTTATTCTCTCTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333550" ref_strand="+" ref_description="SGN-U333550        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 12S seed storage protein (CRA1), nearly identical to SP:P15455 (Plant Mol Biol 11:805-820 (1988)); contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 | chr5:17773491-17775502 REVERSE | Aliases: None(evalue: 7e-36, score=116) genbank/nr: gi|5381325|gb|AAD42944.1| 11S globulin precursor [Sesamum indicum](evalue: 4e-70, score=193)">
      <seq>ccgatgagagagagagagaatcaattagtaataaacaataaaaactccatagccatggaggtctctactaaggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157281" stop="155544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156409" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="587" r_length="569" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156408" i_stop="156040" i_length="369">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156039" g_stop="155844" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="783" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-U333550" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156409"/>
          <exon e_start="156039" e_stop="155844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCATAGCCATGGAGGTCTCTACTAAGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA.................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341062" ref_strand="+" ref_description="SGN-U341062        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cggtttttaagaaatagaaaacaaaatggacataagtctgctgaaaagaaacgcattctttaaactacctaatttttgtcctctttttgcactaaactatagcgtaaaatttaagccagtgaatttatattattacaccaatgactataactactagtctactactactagtactatttatatatcttatatctcagccttttgttatatttctccccttattcataactgaatttgcattgtttcaaattcaatcaccatgtattgcttaaacttgcgtagagtactccttccaactcaaaaaatgtggaagtttttttccaccaaattacaaatcaatttccacaaagtactcaatagatccaaagtcattaagaaagccaagaatccaaatcctttatgcatcaagaaactagccccgtctcttgtctttcgagttcaattcaaaactaaacgttcaaacaataagttcaaatacaagtcgaaattcagacctactctgaaatttcacaagaaatcagcaccagtatatatagatcaacttttcattgagaatatatctgattctgtggtgaagaacaactttggccaaactagtatgattacgacaaagaagaaggagcataaacaagtttgcataacggaaaccgaacaaggtgagataatccatgaaggggaaagtagtagtagtagtagtagtgtaacgaatgatgagatgtgggaatcgttgacattggcatctccacaattgcattgtattaatgaaagagcagaagagttcatagctaaatttcgtgcagacatgctgcgtcaagagaatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="+" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="159866" stop="161291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160166" g_stop="160991" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="+" ref_id="SGN-U341062" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160166" e_stop="160991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</genome_strand>
        <mrna_strand>CGGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="157006" PGL_stop="154932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="157006" e_stop="156339"/>
            <exon e_start="156057" e_stop="155596"/>
            <exon e_start="155495" e_stop="154932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="157006" e_stop="156339" e_length="668"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="156057" e_stop="155596" e_length="462"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="155495" e_stop="154932" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG : GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG : AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</gDNA_template>
            <first_frame> I  S  S  L  Y  F  L  Y  Y  I  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V  R  K  S  *  *  P  S  P  L  T  I  S  T  I  G  P  T  S  L  I  R  T  S  G :   H  S  T  W  P  V  E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E  *  A  *  L  G  L  M  K  K  K  R  N  S  K  G  D  H  N  E  D  S  D  G  G  Q  K  *  L  E  M  A  W  K  K  T  F  A  Q  *  K  S  A  P  T  W  I  L  K  D  E  L  I  S  T  Q  G  K  L  A  K  L  S  M  L  I  A  K  I  F  P  S  L  E  T  W  T  *  V  P  L  K  E  P  Y  I  R :   T  H  *  *  A  L  T  G  Q  *  M  D  T  A  *  S  T  C  K  E  E  M  H  K  C  R  *  *  T  T  P  G  N  K  *  *  M  T  G  *  I  K  E  K  C  L  *  S  L  S  T  M  P  Q  Q  *  K  Q  G  K  M  D  L  N  S  R  C  L  G  Q  A  V  N  Q  *  T  A  N  L  Q  V  T  H  Q  *  L  E  Q  C  Q  L  R  S  S  Q  T  R  T  R  Y  R  Q  M  K  H  N  V  *  K  *  T  E  E  E  K  A  S  C  Y  L  P  R  E  G  H  S  K  M  A  L  M  C  N  N  P  T  L  A  I  A  *  *  Y  K  F  L  V  F  V  F  R  Q  R  *  S  K  S  D  L  Y  L  G  A  N  N  V  T  N  K  A  P  A  F  L  Y  L  N  L  I  Q  D  V  N  S  L  C  A   </first_frame>
            <second_frame>  S  H  L  C  I  F  Y  I  I  *  S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  G  R  A  S  S  R  L  H  *  R  S  Q  P  S  V  Q  P  A  *  S  E  L  Q   : G  I  L  L  G  R  W  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R  N  E  H  D  *  G  *  *  R  R  R  G  I  R  R  A  I  T  T  R  T  A  M  V  G  R  S  N  W  K  W  L  G  R  K  H  L  H  N  E  N  P  H  Q  H  G  Y  S  K  T  S  *  Y  L  L  K  A  S  W  Q  N  *  A  C  *  *  P  K  F  S  H  P  *  R  H  G  H  E  C  L  *  R  N  P  I  S   : E  R  T  D  E  P  S  L  V  S  E  W  T  Q  R  D  L  R  A  K  R  R  C  T  S  A  G  S  R  P  H  R  A  T  S  D  E  *  Q  G  K  S  R  R  N  V  C  S  P  S  V  L  C  L  N  S  E  S  R  A  K  W  I  *  I  R  G  V  *  D  K  Q  S  T  N  E  Q  P  T  C  R  L  H  I  S  D  *  S  N  A  N  *  G  P  H  K  R  V  P  D  I  A  K  *  S  T  T  F  E  N  E  Q  R  R  R  K  L  P  A  I  S  P  E  K  V  I  L  K  W  L  *  C  V  I  I  P  P  W  L  S  P  S  S  T  S  F  *  S  L  F  L  G  K  D  E  A  R  A  T  C  I  *  E  Q  I  M  *  R  I  K  L  L  P  F  C  T  *  I  S  S  K  M  L  I  L  S  V  Q  </second_frame>
            <third_frame>   L  I  F  V  F  F  I  L  Y  N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E  E  E  L  V  A  V  S  I  N  D  L  N  H  R  S  N  Q  L  D  Q  N  F  R  :  A  F  Y  L  A  G  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  M  S  M  I  R  A  D  E  E  E  E  E  F  E  G  R  S  Q  R  G  Q  R  W  W  A  E  V  T  G  N  G  L  E  E  N  I  C  T  M  K  I  R  T  N  M  D  T  Q  R  R  A  D  I  Y  S  R  Q  A  G  K  I  K  H  V  N  S  Q  N  F  P  I  L  R  D  M  D  M  S  A  S  K  G  T  L  Y  P  :  N  A  L  M  S  P  H  W  S  V  N  G  H  S  V  I  Y  V  Q  R  G  D  A  Q  V  Q  V  V  D  H  T  G  Q  Q  V  M  N  D  R  V  N  Q  G  E  M  F  V  V  P  Q  Y  Y  A  S  T  V  K  A  G  Q  N  G  F  E  F  A  V  F  R  T  S  S  Q  P  M  N  S  Q  L  A  G  Y  T  S  V  I  R  A  M  P  I  E  V  L  T  N  A  Y  Q  I  S  P  N  E  A  Q  R  L  K  M  N  R  G  G  E  S  F  L  L  S  P  Q  R  R  S  F  *  N  G  F  N  V  *  *  S  H  L  G  Y  R  L  V  V  Q  V  S  S  L  C  F  *  A  K  M  K  Q  E  R  L  V  F  R  S  K  *  C  N  E  *  S  S  C  L  F  V  P  K  S  H  P  R  C  *  F  S  L  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="157004" stop="156339"/>
                    <exon start="156057" stop="155596"/>
                    <exon start="155495" stop="155115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1506</number_coding_nucleotides>
                  <number_encoded_amino_acids>502</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFVFFILYNQLVINNKNSLAMAVSTRVLLALLFSAFLLSAANAYRQYPFQQGQHGQRSIPLTQAQQCRLQRLTGSQPSQRIESEGGYTEVWDENEEQFQCVGVAPMRNVIRQNSLSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEELVAVSINDLNHRSNQLDQNFRAFYLAGGVQETSGRQIGVGKQSTQKFQNIFRAFNTELMAEAFNIPVEIVRRMQEEQNERGLIVNVREGMSMIRADEEEEEFEGRSQRGQRWWAEVTGNGLEENICTMKIRTNMDTQRRADIYSRQAGKIKHVNSQNFPILRDMDMSASKGTLYPNALMSPHWSVNGHSVIYVQRGDAQVQVVDHTGQQVMNDRVNQGEMFVVPQYYASTVKAGQNGFEFAVFRTSSQPMNSQLAGYTSVIRAMPIEVLTNAYQISPNEAQRLKMNRGGESFLLSPQRRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="156659" e_stop="156339"/>
            <exon e_start="156057" e_stop="155854"/>
            <exon e_start="155273" e_stop="154932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="156659" e_stop="156339" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="156057" e_stop="155854" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="155853" i_stop="155274" i_length="580"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="155273" e_stop="154932" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156659" stop="156339"/>
              <exon start="156057" stop="155854"/>
              <exon start="155273" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG : GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGA : ATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</gDNA_template>
            <first_frame> L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E  E  E  L  V  A  V  S  I  N  D  L  N  H  R  S  N  Q  L  D  Q  N  F  R  :  A  F  Y  L  A  G  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  :  M  N  S  Q  L  A  G  Y  T  S  V  I  R  A  M  P  I  E  V  L  T  N  A  Y  Q  I  S  P  N  E  A  Q  R  L  K  M  N  R  G  G  E  S  F  L  L  S  P  Q  R  R  S  F  *  N  G  F  N  V  *  *  S  H  L  G  Y  R  L  V  V  Q  V  S  S  L  C  F  *  A  K  M  K  Q  E  R  L  V  F  R  S  K  *  C  N  E  *  S  S  C  L  F  V  P  K  S  H  P  R  C  *  F  S  L  C  K </first_frame>
            <second_frame>  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V  R  K  S  *  *  P  S  P  L  T  I  S  T  I  G  P  T  S  L  I  R  T  S  G :   H  S  T  W  P  V  E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E :   *  T  A  N  L  Q  V  T  H  Q  *  L  E  Q  C  Q  L  R  S  S  Q  T  R  T  R  Y  R  Q  M  K  H  N  V  *  K  *  T  E  E  E  K  A  S  C  Y  L  P  R  E  G  H  S  K  M  A  L  M  C  N  N  P  T  L  A  I  A  *  *  Y  K  F  L  V  F  V  F  R  Q  R  *  S  K  S  D  L  Y  L  G  A  N  N  V  T  N  K  A  P  A  F  L  Y  L  N  L  I  Q  D  V  N  S  L  C  A   </second_frame>
            <third_frame>   L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  G  R  A  S  S  R  L  H  *  R  S  Q  P  S  V  Q  P  A  *  S  E  L  Q   : G  I  L  L  G  R  W  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R   : N  E  Q  P  T  C  R  L  H  I  S  D  *  S  N  A  N  *  G  P  H  K  R  V  P  D  I  A  K  *  S  T  T  F  E  N  E  Q  R  R  R  K  L  P  A  I  S  P  E  K  V  I  L  K  W  L  *  C  V  I  I  P  P  W  L  S  P  S  S  T  S  F  *  S  L  F  L  G  K  D  E  A  R  A  T  C  I  *  E  Q  I  M  *  R  I  K  L  L  P  F  C  T  *  I  S  S  K  M  L  I  L  S  V  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="156659" stop="156339"/>
                    <exon start="156057" stop="155854"/>
                    <exon start="155273" stop="155115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEELVAVSINDLNHRSNQLDQNFRAFYLAGGVQETSGRQIGVGKQSTQKFQNIFRAFNTELMAEAFNIPVEIVRRMQEEQNERGLIVNVREGMNSQLAGYTSVIRAMPIEVLTNAYQISPNEAQRLKMNRGGESFLLSPQRRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="156977" e_stop="156409"/>
            <exon e_start="156039" e_stop="155844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="156977" e_stop="156409" e_length="569"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="156408" i_stop="156040" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="156039" e_stop="155844" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156409"/>
              <exon start="156039" stop="155844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA : GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</gDNA_template>
            <first_frame> N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E :   E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E  *  A  * </first_frame>
            <second_frame>  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V   : R  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R  N  E  H   </second_frame>
            <third_frame>   S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  :  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  M  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="156977" stop="156409"/>
                    <exon start="156039" stop="156003"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQLVINNKNSLAMAVSTRVLLALLFSAFLLSAANAYRQYPFQQGQHGQRSIPLTQAQQCRLQRLTGSQPSQRIESEGGYTEVWDENEEQFQCVGVAPMRNVIRQNSLSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEYKKLVEGKLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="160166" PGL_stop="160991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160166" e_stop="160991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="160166" e_stop="160991" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160166" stop="160991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</gDNA_template>
            <first_frame> L  F  L  R  N  R  K  Q  N  G  H  K  S  A  E  K  K  R  I  L  *  T  T  *  F  L  S  S  F  C  T  K  L  *  R  K  I  *  A  S  E  F  I  L  L  H  Q  *  L  *  L  L  V  Y  Y  Y  *  Y  Y  L  Y  I  L  Y  L  S  L  L  L  Y  F  S  P  Y  S  *  L  N  L  H  C  F  K  F  N  H  H  V  L  L  K  L  A  *  S  T  P  S  N  S  K  N  V  E  V  F  F  H  Q  I  T  N  Q  F  P  Q  S  T  Q  *  I  Q  S  H  *  E  S  Q  E  S  K  S  F  M  H  Q  E  T  S  P  V  S  C  L  S  S  S  I  Q  N  *  T  F  K  Q  *  V  Q  I  Q  V  E  I  Q  T  Y  S  E  I  S  Q  E  I  S  T  S  I  Y  R  S  T  F  H  *  E  Y  I  *  F  C  G  E  E  Q  L  W  P  N  *  Y  D  Y  D  K  E  E  G  A  *  T  S  L  H  N  G  N  R  T  R  *  D  N  P  *  R  G  K  *  *  *  *  *  *  C  N  E  *  *  D  V  G  I  V  D  I  G  I  S  T  I  A  L  Y  *  *  K  S  R  R  V  H  S  *  I  S  C  R  H  A  A  S  R  E  Y  V  </first_frame>
            <second_frame>  C  F  *  E  I  E  N  K  M  D  I  S  L  L  K  R  N  A  F  F  K  L  P  N  F  C  P  L  F  A  L  N  Y  S  V  K  F  K  P  V  N  L  Y  Y  Y  T  N  D  Y  N  Y  *  S  T  T  T  S  T  I  Y  I  S  Y  I  S  A  F  C  Y  I  S  P  L  I  H  N  *  I  C  I  V  S  N  S  I  T  M  Y  C  L  N  L  R  R  V  L  L  P  T  Q  K  M  W  K  F  F  S  T  K  L  Q  I  N  F  H  K  V  L  N  R  S  K  V  I  K  K  A  K  N  P  N  P  L  C  I  K  K  L  A  P  S  L  V  F  R  V  Q  F  K  T  K  R  S  N  N  K  F  K  Y  K  S  K  F  R  P  T  L  K  F  H  K  K  S  A  P  V  Y  I  D  Q  L  F  I  E  N  I  S  D  S  V  V  K  N  N  F  G  Q  T  S  M  I  T  T  K  K  K  E  H  K  Q  V  C  I  T  E  T  E  Q  G  E  I  I  H  E  G  E  S  S  S  S  S  S  S  V  T  N  D  E  M  W  E  S  L  T  L  A  S  P  Q  L  H  C  I  N  E  R  A  E  E  F  I  A  K  F  R  A  D  M  L  R  Q  E  N  M  L </second_frame>
            <third_frame>   V  F  K  K  *  K  T  K  W  T  *  V  C  *  K  E  T  H  S  L  N  Y  L  I  F  V  L  F  L  H  *  T  I  A  *  N  L  S  Q  *  I  Y  I  I  T  P  M  T  I  T  T  S  L  L  L  L  V  L  F  I  Y  L  I  S  Q  P  F  V  I  F  L  P  L  F  I  T  E  F  A  L  F  Q  I  Q  S  P  C  I  A  *  T  C  V  E  Y  S  F  Q  L  K  K  C  G  S  F  F  P  P  N  Y  K  S  I  S  T  K  Y  S  I  D  P  K  S  L  R  K  P  R  I  Q  I  L  Y  A  S  R  N  *  P  R  L  L  S  F  E  F  N  S  K  L  N  V  Q  T  I  S  S  N  T  S  R  N  S  D  L  L  *  N  F  T  R  N  Q  H  Q  Y  I  *  I  N  F  S  L  R  I  Y  L  I  L  W  *  R  T  T  L  A  K  L  V  *  L  R  Q  R  R  R  S  I  N  K  F  A  *  R  K  P  N  K  V  R  *  S  M  K  G  K  V  V  V  V  V  V  V  *  R  M  M  R  C  G  N  R  *  H  W  H  L  H  N  C  I  V  L  M  K  E  Q  K  S  S  *  L  N  F  V  Q  T  C  C  V  K  R  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160398" stop="160991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIVSNSITMYCLNLRRVLLPTQKMWKFFSTKLQINFHKVLNRSKVIKKAKNPNPLCIKKLAPSLVFRVQFKTKRSNNKFKYKSKFRPTLKFHKKSAPVYIDQLFIENISDSVVKNNFGQTSMITTKKKEHKQVCITETEQGEIIHEGESSSSSSSVTNDEMWESLTLASPQLHCINERAEEFIAKFRADMLRQENML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 6832 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 1708 bytes was the average size of a spliced alignment
$ 7040 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3520 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-29 14:47:32
-->
